Citrus Sinensis ID: 037108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHHHcccccccEEEEccccccccHHHHHHHHcccccccccEEEEEccccccccccccHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEccccccccccEEEEcccccccccccccccccEEEEEccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccccHHcccccccHHHHHccccEEEEcccccccHHHHHHHHHcccEEEEccccccccHHHHHHHcHcccccccEEEEEEcccccccccHHHHHHHHHHccccccccEEEEEccccccccccccccccHHHEEEEEHHcccccccccccccccccHcEEEEccccccEEccHHHcHHHHHEEccccHHHHHcccccccHcEEEEccccHHcccccccccccEEEEcc
Coil and Loop (DISEMBL)
mgnliklhhlnnpstdsleempqgigKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWnnstsnirepetdtcvldllkphqslkklkingyggtkFAIYTLSITGDSLFSRYARmgkwiphgsgksdeGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILslptlrkltvNGCKEVVGRAinlsssssvvlwd
Flexible Loop (DISEMBL)
mgnliklhhlnnpstdsleEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAkeaqlngkrnlKDLLLEWNNstsnirepetDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSIlslptlrklTVNGCKEVVgrainlsssssvvlwd
Low Complexity Region (SEG)
MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD
Disordered region (IsUnstruct)
************************IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINL**********
Disordered Region (DISOPRED)
MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSN*RE*ETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD
Disordered Region (DISEMBL)
MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLS*********
Disordered Region (DISPRO)
*GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q7XBQ9	970	Disease resistance protei	N/A	no	0.468	0.115	0.464	2e-15
Q7XA42	979	Putative disease resistan	N/A	no	0.456	0.111	0.421	1e-14
Q9LRR5	1424	Putative disease resistan	yes	no	0.514	0.086	0.413	1e-14
Q9LRR4	1054	Putative disease resistan	no	no	0.589	0.133	0.322	1e-13
Q7XA39	988	Putative disease resistan	N/A	no	0.464	0.112	0.421	4e-13
Q7XA40	992	Putative disease resistan	N/A	no	0.447	0.107	0.414	7e-12

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 15  TDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAA 74
           + SL  MP  IG LT L+T+ +FVVG + G  L +L +L +L G++ IS LE VK    A
Sbjct: 606 SQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDA 664

Query: 75  KEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128
           KEA L+ K NL  L + WNN   +I E E +  VL+ LKPH +L  LKI G+ G
Sbjct: 665 KEANLSAKGNLHSLSMSWNNFGPHIYESE-EVKVLEALKPHSNLTSLKIYGFRG 717

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 5/114 (4%)

Query: 17  SLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE 76
           SL   P  IG LT L+++  FV+G   G  L +LK+L +L G++ I++L+ VK+ + AKE
Sbjct: 607 SLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKE 665

Query: 77  AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK 130
           A L+ K NL  L L W+    +      D+ VL+ LKPH +LK L+ING+GG +
Sbjct: 666 ANLSAKANLHSLCLSWDLDGKH----RYDSEVLEALKPHSNLKYLEINGFGGIR 715

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 10/133 (7%)

Query: 18  LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
           L EMP GI KL SL+ +  FV+G   G+GL +LK L HL+GT+ IS L+NV   S AK+A
Sbjct: 655 LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDA 714

Query: 78  QLNGKRNLKDLLLEWNNSTSNIREPETD--TC----VLDLLKPHQSLKKLKINGYGGTKF 131
            L  K  L  L+L+W    S       +   C    VL +L+PH  LK   I  Y G  F
Sbjct: 715 GLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAF 774

Query: 132 AIYTLSITGDSLF 144
             +     GDS F
Sbjct: 775 PKW----LGDSSF 783

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 11/152 (7%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
           + NLI L +L+   T  L +MP+  G+L SL+T+  F V    GS + +L  L  L G +
Sbjct: 645 ISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKL 703

Query: 61  CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTS------NIREPETDTCVLDLLKP 114
            I  L+ V +++ A EA LN K++L+++   W   +S      N    + +  V + L+P
Sbjct: 704 KIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRP 763

Query: 115 HQSLKKLKINGYGGTKFAIYTLSITGDSLFSR 146
           H+ ++KL I  Y G +F  +      D  FSR
Sbjct: 764 HRHIEKLAIERYKGRRFPDW----LSDPSFSR 791

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 18  LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
           L   P  IG LT L+T+  F+VG++ G  L +LK+L +L G++ I+ LE VK  + A EA
Sbjct: 609 LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EA 666

Query: 78  QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF 131
            L+ K NL+ L + W+N   N R    +  VL+ LKPH +LK L+I  +GG +F
Sbjct: 667 NLSAKANLQSLSMSWDNDGPN-RYESKEVKVLEALKPHPNLKYLEIIAFGGFRF 719

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 18  LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
           L  MP  IG LT L+T+  FVVG   G  L +L++L +L+G + I+ LE VK    AKEA
Sbjct: 617 LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEA 675

Query: 78  QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128
            L+ K NL  L + W+      R    +  VL+ LKPH +LK L+I  + G
Sbjct: 676 NLSAKANLHSLSMSWDRPN---RYESEEVKVLEALKPHPNLKYLEIIDFCG 723

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
356554923	1399	PREDICTED: putative disease resistance R	0.941	0.160	0.336	2e-29
400131587	1388	FB_MR5 [Malus x robusta]	0.907	0.156	0.360	2e-29
359487182	2283	PREDICTED: putative disease resistance p	0.941	0.098	0.329	9e-29
147862409	1466	hypothetical protein VITISV_042289 [Viti	0.941	0.153	0.329	1e-28
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.907	0.152	0.322	5e-26
297742679	1760	unnamed protein product [Vitis vinifera]	0.615	0.083	0.430	6e-26
225450001	1389	PREDICTED: putative disease resistance p	0.920	0.158	0.329	1e-25
297736321	967	unnamed protein product [Vitis vinifera]	0.916	0.226	0.320	1e-25
147819724	1481	hypothetical protein VITISV_007111 [Viti	0.916	0.147	0.320	1e-25
225450019	1394	PREDICTED: putative disease resistance p	0.916	0.157	0.320	2e-25

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 139/285 (48%), Gaps = 60/285 (21%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
           M +LI L HL+   + SL  MP GIGKLT L+T+  FVVG+   SG+ +L  L +++G +
Sbjct: 651 MSDLINLRHLDITRSHSLTRMPHGIGKLTHLQTLSNFVVGS---SGIGELMKLSNIRGVL 707

Query: 61  CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKK 120
            +SRLE+V +   A EA +N K  +  L L+W +  +N    E    VL +L+PH++L K
Sbjct: 708 SVSRLEHVTDTREASEAMINKKVGIDVLKLKWTSCMNNQSHTERAKEVLQMLQPHKNLAK 767

Query: 121 LKINGYGGTKF---------------------------------AIYTLSITG------- 140
           L I  YGGT F                                 A+  L I G       
Sbjct: 768 LTIKCYGGTSFPKWIGDPSYKSLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVCCI 827

Query: 141 DSLFS--------------RYARMGKW---IPHGSGKSDEGLADLRELFLVSCSKLQRTL 183
           D  F                +  M KW       + + ++  + L++LF+V C KL   L
Sbjct: 828 DGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKCPKLLGKL 887

Query: 184 LEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAIN 228
            E LPSL+ +++++CEQLLV+I SLP L KL + GCK +V    N
Sbjct: 888 PENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCAN 932

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 147/291 (50%), Gaps = 74/291 (25%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIG---SGLRQLKSLIHLQ 57
           M NL+ L HLNN +   LE+MP  +G+L +L+++ KFVV    G   SG+R+L+ L+HL+
Sbjct: 646 MSNLVNLRHLNNSNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLR 705

Query: 58  GTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQS 117
           GT+CISRLENV ++  A+ A LN K  L  L+LEW++S S+ R  ET++ VLD+L+PH  
Sbjct: 706 GTLCISRLENVTDVEDAQRANLNCKERLDSLVLEWSHS-SDTR--ETESAVLDMLQPHTK 762

Query: 118 LKKLKINGYGGTKFAIYTLSITGDSLFSRYA--------------RMGKWIPHGSGKSDE 163
           LK+L I  Y G +F+    S  G  LFS                  +GK +PH       
Sbjct: 763 LKELTIKSYAGKEFS----SWVGVPLFSNMVLVRLEECNNCLSLPPLGK-LPHLKELYIR 817

Query: 164 GLADLREL---FLVSCSKLQRTLLEYL-----------------------PSLETLVIR- 196
           G+  +  +   F   CS L   LLE L                       P L+TL++R 
Sbjct: 818 GMNAVESVGAEFYGECS-LPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRK 876

Query: 197 ---------------------KCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
                                KCE+LLVSI +   LR+L ++GCK VV  A
Sbjct: 877 CSKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTA 927

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487182|ref|XP_003633528.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 57/282 (20%)

Query: 1    MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
            +GNL+ L HL+   T  L EMP  IG LT+L+T+ KF+VG+    G+R+L++L++LQG +
Sbjct: 1608 IGNLLNLRHLDITDTSQLLEMPSQIGSLTNLQTLSKFIVGSGSSLGIRELRNLLYLQGKL 1667

Query: 61   CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKK 120
             IS L NV  +  AK+A L  K+N+K+L +EW+N   N R    +  VL+ L+PH++LKK
Sbjct: 1668 SISGLHNVVNVQDAKDANLADKQNIKELTMEWSNDFRNARNETEEMHVLESLQPHRNLKK 1727

Query: 121  LKINGYGG----------------------------------------------TKFAIY 134
            L +  YGG                                              +K  I 
Sbjct: 1728 LMVAFYGGSQLPCWIKEPSCPMMTHLILKNCKMCTSLPSLGRLPLLKDLHIEGLSKIMII 1787

Query: 135  TLSITGDSL-------FSRYARMGKWIPHGSGKSDEG---LADLRELFLVSCSKLQRTLL 184
            +L   G+S+       F ++  M KW        DE       LREL +  C KL +  L
Sbjct: 1788 SLEFYGESVKPFPSLEFLKFENMPKWKTWSFPDVDEEPELFPCLRELTIRKCPKLDKG-L 1846

Query: 185  EYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
              LPSL TL I +C  L V      +LRKL    C +++ R+
Sbjct: 1847 PNLPSLVTLDIFECPNLAVPFSRFASLRKLNAEECDKMILRS 1888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862409|emb|CAN81911.1| hypothetical protein VITISV_042289 [Vitis vinifera]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 57/282 (20%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
           +GNL+ L HL+   T  L EMP  IG LT+L+T+ KF+VG+    G+R+L++L++LQG +
Sbjct: 654 IGNLLNLRHLDITDTSQLLEMPSQIGSLTNLQTLSKFIVGSGSSLGIRELRNLLYLQGKL 713

Query: 61  CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKK 120
            IS L NV  +  AK+A L  K+N+K+L +EW+N   N R    +  VL+ L+PH++LKK
Sbjct: 714 SISGLHNVVNVQDAKDANLADKQNIKELTMEWSNDFRNARNETEEMHVLESLQPHRNLKK 773

Query: 121 LKINGYGG----------------------------------------------TKFAIY 134
           L +  YGG                                              +K  I 
Sbjct: 774 LMVAFYGGSQLPCWIKEPSCPMMTHLILKNCKMCTSLPSLGRLPLLKDLHIEGLSKIMII 833

Query: 135 TLSITGDSL-------FSRYARMGKWIPHGSGKSDEG---LADLRELFLVSCSKLQRTLL 184
           +L   G+S+       F ++  M KW        DE       LREL +  C KL +  L
Sbjct: 834 SLEFYGESVKPFPSLEFLKFENMPKWKTWSFPDVDEEXELFPCLRELTIRKCPKLDKG-L 892

Query: 185 EYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
             LPSL TL I +C  L V      +LRKL    C +++ R+
Sbjct: 893 PNLPSLVTLDIFECPNLAVPFSRFASLRKLNAEECDKMILRS 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 65/282 (23%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGN-EIGSGLRQLKSLIHLQGT 59
            G L  L HLN   ++ LE MP  IG L+SL+T+  FVVG  +    +R+L  L+HL+GT
Sbjct: 646 FGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGT 705

Query: 60  VCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLK 119
           +CIS+LENV +   A+++ L GK++L ++++EW+++ +  ++ ET   VL++L+P+  LK
Sbjct: 706 LCISKLENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLK 765

Query: 120 KLKINGYGGTKFAIYTLSITGDSLFS-----RYAR---------MGKWIPHGSGKSDEGL 165
           +L +  YGGTKF  +     GD  FS     R+           +G+ +P       +G+
Sbjct: 766 ELTVKCYGGTKFPTW----IGDPSFSNLVLLRFENCDNCNSLPPVGQ-LPFLKDLLIKGM 820

Query: 166 ADL----RELFLVSCSK-----------------------------------------LQ 180
           A +    RE +  SCS+                                         L 
Sbjct: 821 AGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVNEAFACLHKLSIIRCHNLV 880

Query: 181 RTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEV 222
           R L ++LPSL+ LVI  C  ++VS+ +LP L  L + GCK V
Sbjct: 881 RKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRV 922

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742679|emb|CBI35132.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
           MGNLI L HL+   T  L+EMP  +G LT+L+T+ KF+VG    SG+ +LK+L HL+G +
Sbjct: 525 MGNLINLRHLDITGTIRLQEMPPRMGNLTNLQTLSKFIVGKGSRSGIEELKNLCHLRGEI 584

Query: 61  CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKK 120
           CIS L NV  I AA +A L  K N+++L++ W +    +     +  VL+ L+PH++LKK
Sbjct: 585 CISGLHNVGNIRAAIDANLKNKTNIEELMMAWRSDFDGLPNERNEMDVLEFLQPHKNLKK 644

Query: 121 LKINGYGGTKFAIYTLSITGDSLFSRYARMG 151
           L +  YGG KF     S  GD+ FS   R+ 
Sbjct: 645 LTVEFYGGAKFP----SWIGDASFSTLVRLN 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450001|ref|XP_002272075.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 59/279 (21%)

Query: 1   MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
           +GNLI L HLN     +L+EMPQ IGKL +L+T+  F+VG     G+++LK L HL+G +
Sbjct: 660 IGNLINLRHLNVERCLNLDEMPQQIGKLKNLQTLSNFIVGKSRYLGIKELKHLSHLRGKI 719

Query: 61  CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKK 120
            ISRLENV  I  A +A L  K N+++L++ W++   N+R  +T+  VL  L+PH SLKK
Sbjct: 720 FISRLENVVNIQDAIDANLRTKLNVEELIMSWSSWFDNLRNEDTEMEVLLSLQPHTSLKK 779

Query: 121 LKINGYGGTKFA----------IYTLSITG------------------------------ 140
           L I  YGG +F           +  LSI G                              
Sbjct: 780 LDIEAYGGRQFPNWICDPSYSKLVELSIWGCMRCTDLPSVGQLPFLKKLVIERMDRVKSV 839

Query: 141 ----DSLFSRYAR------------MGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL 184
               +   S YA+            M KW       S E  + L +L +  C +L + L 
Sbjct: 840 GLEFEGQVSPYAKPFQCLEYLSFREMKKW--KKWSWSRESFSRLVQLQIKDCPRLSKKLP 897

Query: 185 EYLPSLETLVIRKCEQLLVSILS-LPTLRKLTVNGCKEV 222
            +L SL  L I  C + +V + + LP+L++L +  C E+
Sbjct: 898 THLTSLVRLEINNCPETMVPLPTHLPSLKELNICYCLEM 936

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736321|emb|CBI24959.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 65/284 (22%)

Query: 3   NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCI 62
           NL  L HL+  +T+ LEEM   I KL SL+ + KF+VG + G  +++L+++ HLQG +CI
Sbjct: 567 NLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCI 625

Query: 63  SRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLK 122
           S LENV  +  A++A LN K+ L++L +EW+    +         VLD L+PH +L KLK
Sbjct: 626 SNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHFNLNKLK 685

Query: 123 INGYGGTKFAIYTLSITGDSLFSRYARMG-------------KWIPHGSGKSDEGLADL- 168
           I  YGG +F  +     GD  FS+   +               W+P       EGL ++ 
Sbjct: 686 IEYYGGPEFPRW----IGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVK 741

Query: 169 ---RELF-------------------------------------------LVSCSKLQRT 182
              RE +                                           +V+C KL + 
Sbjct: 742 IVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLIKK 801

Query: 183 LLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
           L  YLPSL  L I +C  L+  +  LP+L KL V  C E V R+
Sbjct: 802 LPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRS 845

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera]

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 65/284 (22%)

Query: 3   NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCI 62
           NL  L HL+  +T+ LEEM   I KL SL+ + KF+VG + G  +++L+++ HLQG +CI
Sbjct: 663 NLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCI 721

Query: 63  SRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLK 122
           S LENV  +  A++A LN K+ L++L +EW+    +         VLD L+PH +L KLK
Sbjct: 722 SNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHFNLNKLK 781

Query: 123 INGYGGTKFAIYTLSITGDSLFSRYARMG-------------KWIPHGSGKSDEGLADL- 168
           I  YGG +F  +     GD  FS+   +               W+P       EGL ++ 
Sbjct: 782 IEYYGGPEFPRW----IGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVK 837

Query: 169 ---RELF-------------------------------------------LVSCSKLQRT 182
              RE +                                           +V+C KL + 
Sbjct: 838 IVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLIKK 897

Query: 183 LLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
           L  YLPSL  L I +C  L+  +  LP+L KL V  C E V R+
Sbjct: 898 LPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRS 941

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca]

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 132/284 (46%), Gaps = 65/284 (22%)

Query: 3   NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCI 62
           NL  L HL+  +T+ LEEM   I KL SL+ + KF+VG + G  +++L+++ HLQG +CI
Sbjct: 663 NLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGGLCI 721

Query: 63  SRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLK 122
           S LENV  +  A++A LN K+ L++L +EW+    +         VLD L+PH +L KLK
Sbjct: 722 SNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHFNLNKLK 781

Query: 123 INGYGGTKFAIYTLSITGDSLFSRYARMG-------------KWIPHGSGKSDEGLADL- 168
           I  YGG +F  +     GD  FS+   +               W+P       EGL ++ 
Sbjct: 782 IEYYGGPEFPRW----IGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVK 837

Query: 169 ---RELF-------------------------------------------LVSCSKLQRT 182
              RE +                                           +V+C KL + 
Sbjct: 838 IVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLIKK 897

Query: 183 LLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRA 226
           L  YLPSL  L I +C  L+  +  LP+L KL V  C E V R+
Sbjct: 898 LPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRS 941

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.581	0.097	0.4	1e-18
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.589	0.133	0.342	3.4e-18
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.874	0.115	0.283	5.5e-05

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 60/150 (40%), Positives = 77/150 (51%)

Query:     1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
             +  LI L  L+   T  L EMP GI KL SL+ +  FV+G   G+GL +LK L HL+GT+
Sbjct:   639 IAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTL 697

Query:    61 CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDT--C----VLDLLKP 114
              IS L+NV   S AK+A L  K  L  L+L+W    S       +   C    VL +L+P
Sbjct:   698 RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757

Query:   115 HQSLKKLKINGYGGTKFAIYTLSITGDSLF 144
             H  LK   I  Y G  F  +     GDS F
Sbjct:   758 HPHLKTFCIESYQGGAFPKWL----GDSSF 783

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 52/152 (34%), Positives = 84/152 (55%)

Query:     1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
             + NLI L +L+   T  L +MP+  G+L SL+T+  F V    GS + +L  L  L G +
Sbjct:   645 ISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKL 703

Query:    61 CISRLENVKEISAAKEAQLNGKRNLKDLLLEW---NNSTSNIREP---ETDTCVLDLLKP 114
              I  L+ V +++ A EA LN K++L+++   W   ++S+ N   P   + +  V + L+P
Sbjct:   704 KIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRP 763

Query:   115 HQSLKKLKINGYGGTKFAIYTLSITGDSLFSR 146
             H+ ++KL I  Y G +F  + LS   D  FSR
Sbjct:   764 HRHIEKLAIERYKGRRFPDW-LS---DPSFSR 791

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 135 (52.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
 Identities = 66/233 (28%), Positives = 107/233 (45%)

Query:     1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEI-GSGLRQLKSLIHLQGT 59
             + NL+ L HL   + D +      IGK+TSL+ +  F+V N + G  + QLKS+  L   
Sbjct:   790 INNLLSLRHL--VAYDEVCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLV-Q 846

Query:    60 VCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPET--DTCVLDLLKPHQS 117
             + +S+LENV+    A  A+L  K++L+ L L W ++ +     E+  D    D+    + 
Sbjct:   847 LSVSQLENVRTQEEACGAKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYGSDMNIETEG 906

Query:   118 LKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHG------SGKSDE-------- 163
              ++L +    G +   +  +I+ + L S     G    HG      SG +          
Sbjct:   907 -EELSVGDANGAQSLQHHSNISSE-LASSEVLEGLEPHHGLKYLRISGYNGSTSPTWLPS 964

Query:   164 GLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTV 216
              L  L+ L L  C K Q   LE L  L  LV+ K      + LS+P+L +L +
Sbjct:   965 SLTCLQTLHLEKCGKWQILPLERLGLLVKLVLIKMRN--ATELSIPSLEELVL 1015

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031014001 SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (1121 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.41
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.09
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.28
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.18
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.91
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.76
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.2
PRK15386	426	type III secretion protein GogB; Provisional	97.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.96
PRK15386	426	type III secretion protein GogB; Provisional	96.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.45
PLN03150	623	hypothetical protein; Provisional	96.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.2
PLN03150	623	hypothetical protein; Provisional	96.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.78
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.66
KOG4341	483	consensus F-box protein containing LRR [General fu	95.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.51
smart00370	26	LRR Leucine-rich repeats, outliers.	94.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	87.18
KOG4341	483	consensus F-box protein containing LRR [General fu	85.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.94
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	82.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	82.65

>PLN03210 Resistant to P

Probab=99.46  E-value=3e-13  Score=127.66  Aligned_cols=79  Identities=29%  Similarity=0.392  Sum_probs=56.6

Q ss_pred             CCCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccccc-----------------------cccCCCCcccE
Q 037108          159 GKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQLL-----------------------VSILSLPTLRK  213 (239)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l~-----------------------~~~~~l~~L~~  213 (239)
                      |..++.+++|+.|++.+|++++ .+|.  .+++|+.|++++|..+.                       .++..+++|+.
T Consensus       795 P~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~  873 (1153)
T PLN03210        795 PSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF  873 (1153)
T ss_pred             ChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCE
Confidence            4456678888888888887776 7765  46778888887776542                       12345778899


Q ss_pred             EEecccCccccccccccCccceEee
Q 037108          214 LTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       214 L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      |++.+|+++...+....++++|+..
T Consensus       874 L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        874 LDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             EECCCCCCcCccCcccccccCCCee
Confidence            9999999988877766666666543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=1.4e-13  Score=128.50  Aligned_cols=111  Identities=20%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +.+.+|++|++++|...+.+|..++++++|++|++..+.. .+.....++++++|+ .|++.+..-    ....+..+.+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~-~L~L~~n~l----~~~~p~~l~~  210 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLE-FLTLASNQL----VGQIPRELGQ  210 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCC-eeeccCCCC----cCcCChHHcC
Confidence            3567788888888854446787788888888887754322 112233455666666 666543321    1122344556


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      +++|+.|+++++....         .++..+..+++|+.|++.++.
T Consensus       211 l~~L~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        211 MKSLKWIYLGYNNLSG---------EIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             cCCccEEECcCCccCC---------cCChhHhcCCCCCEEECcCce
Confidence            6667777666443211         122233444566666665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.41  E-value=4.2e-13  Score=125.33  Aligned_cols=218  Identities=19%  Similarity=0.104  Sum_probs=128.3

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+||+|++++|...+.+|.  +.+.+|++|++..+.. .+.....++++++|+ .|++.+..    .....+..+.++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~~~~l  187 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML-SGEIPNDIGSFSSLK-VLDLGGNV----LVGKIPNSLTNL  187 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc-cccCChHHhcCCCCC-EEECccCc----ccccCChhhhhC
Confidence            688999999999965556774  6799999998865432 233445678888888 88875433    222334556778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-Cccchhhhcc--------Ccce---e-eeecc
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSIT--------GDSL---F-SRYAR  149 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~--------~~~~---~-L~l~~  149 (239)
                      ++|+.|+++.+...         ...++.+..+.+|+.|++.++... ..|..+..+.        ++.-   . -.+..
T Consensus       188 ~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        188 TSLEFLTLASNQLV---------GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             cCCCeeeccCCCCc---------CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence            89999999865422         124556667789999999887644 3554442211        1000   0 01112


Q ss_pred             CCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEE
Q 037108          150 MGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKL  214 (239)
Q Consensus       150 ~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L  214 (239)
                      +++++.+.         .|..++.+++|++|++++| .+.+.+|.   .+++|+.|++.++.-   ++..+..+++|+.|
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            22222211         1233445666666766655 34445543   456677777766542   22345567777777


Q ss_pred             EecccCccccccccccCccceEee
Q 037108          215 TVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       215 ~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      ++.+|.-....+..+..+++|+.+
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L  361 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVL  361 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEE
Confidence            777776544455555555554443

>PLN03210 Resistant to P

Probab=99.24  E-value=5.3e-11  Score=112.67  Aligned_cols=212  Identities=20%  Similarity=0.159  Sum_probs=115.3

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      ..+|+.|+++++ .+..+|.++..+++|++|++..+..  -..+..+..+++|+ .|.+.++....    ..+..+..++
T Consensus       610 ~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip~ls~l~~Le-~L~L~~c~~L~----~lp~si~~L~  681 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKN--LKEIPDLSMATNLE-TLKLSDCSSLV----ELPSSIQYLN  681 (1153)
T ss_pred             ccCCcEEECcCc-cccccccccccCCCCCEEECCCCCC--cCcCCccccCCccc-EEEecCCCCcc----ccchhhhccC
Confidence            356777777776 4677777777777777776643321  12233455566666 66665544322    2234455666


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc---------------------CCCCccchhhhccCcc
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY---------------------GGTKFAIYTLSITGDS  142 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~~~~p~~~l~l~~~~  142 (239)
                      +|+.|.++.+.....         ++... .+.+|+.|.+.+|                     ....+|..+ .+..- 
T Consensus       682 ~L~~L~L~~c~~L~~---------Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L-  749 (1153)
T PLN03210        682 KLEDLDMSRCENLEI---------LPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENL-  749 (1153)
T ss_pred             CCCEEeCCCCCCcCc---------cCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccc-
Confidence            777777765432111         11111 2344555555544                     322233211 00000 


Q ss_pred             eeeeeccCCCceeeCC-----CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccccccc--cCCCCccc
Q 037108          143 LFSRYARMGKWIPHGS-----GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLVS--ILSLPTLR  212 (239)
Q Consensus       143 ~~L~l~~~~~l~~~~~-----~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~~--~~~l~~L~  212 (239)
                      ..|.+..+.....|..     +.....+++|+.|++++|+.+. .+|.   .+++|+.|++.+|.+++..  ...+++|+
T Consensus       750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~  828 (1153)
T PLN03210        750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE  828 (1153)
T ss_pred             ccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence            0011111111011100     0112235799999999998775 7875   6899999999999987431  11578999


Q ss_pred             EEEecccCccccccccccCccceE
Q 037108          213 KLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       213 ~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      +|++++|.++...+....+++.|.
T Consensus       829 ~L~Ls~c~~L~~~p~~~~nL~~L~  852 (1153)
T PLN03210        829 SLDLSGCSRLRTFPDISTNISDLN  852 (1153)
T ss_pred             EEECCCCCccccccccccccCEeE
Confidence            999999988876665544444443

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.09  E-value=7.5e-11  Score=107.50  Aligned_cols=67  Identities=25%  Similarity=0.262  Sum_probs=42.3

Q ss_pred             CCcCCcccEEeeccCccccccccC------------CCCcccEE-Eeccccccccc--c-CCCCcccEEEecccCccccc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE------------YLPSLETL-VIRKCEQLLVS--I-LSLPTLRKLTVNGCKEVVGR  225 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~------------~l~~L~~L-~l~~c~~l~~~--~-~~l~~L~~L~i~~c~~l~~~  225 (239)
                      ...+|+|+.|.+..|+.++..+|.            .|++++.+ .+.+.+.+++.  . -.+++|+++.+..||++...
T Consensus       766 ~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~  845 (889)
T KOG4658|consen  766 LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL  845 (889)
T ss_pred             hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC
Confidence            345789999999999887744442            34555555 35444444331  1 13456788888888888766


Q ss_pred             ccc
Q 037108          226 AIN  228 (239)
Q Consensus       226 ~~~  228 (239)
                      |..
T Consensus       846 P~~  848 (889)
T KOG4658|consen  846 PLL  848 (889)
T ss_pred             ccc
Confidence            654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.97  E-value=4.7e-11  Score=102.21  Aligned_cols=216  Identities=21%  Similarity=0.244  Sum_probs=129.9

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      +|+-|-+||++++ .+..+|+++.+|.+||+|++...    +-..-+|.+|+.+. +|.+..+.+...-....+..+..+
T Consensus       148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N----PL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN----PLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC----hhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhh
Confidence            5677889999999 58999999999999999987431    11222344444444 444444444333344555667777


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc----cchh----hhccCc------ceeeeec
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF----AIYT----LSITGD------SLFSRYA  148 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----p~~~----l~l~~~------~~~L~l~  148 (239)
                      .||+.++++.++..          .+++.+-...+|+.|.++++....+    ..|-    ++++-.      .+.-.+.
T Consensus       222 ~NL~dvDlS~N~Lp----------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLP----------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             hhhhhccccccCCC----------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence            88888888755421          2344444556677777766543322    1221    010000      0000111


Q ss_pred             cCCC-------ceeeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEe
Q 037108          149 RMGK-------WIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTV  216 (239)
Q Consensus       149 ~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i  216 (239)
                      .+..       +..-..|..+|.+.+|+.++..+. +|+ .+|+   ..++|+.|++....  -+++.+.-++-|+.|++
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence            1111       111113667788888998888854 786 8886   56889999886544  34567778899999999


Q ss_pred             cccCccccccccccCccceE
Q 037108          217 NGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       217 ~~c~~l~~~~~~~~~l~~L~  236 (239)
                      +..|+|.+.|..-..-++|+
T Consensus       370 reNpnLVMPPKP~da~~~le  389 (1255)
T KOG0444|consen  370 RENPNLVMPPKPNDARKKLE  389 (1255)
T ss_pred             cCCcCccCCCCcchhhhcce
Confidence            99999987766543334443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=5.4e-10  Score=102.02  Aligned_cols=111  Identities=23%  Similarity=0.223  Sum_probs=72.6

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      .++.||.||+++|..+.++|++||+|.+|++|++..+.-.  ..+..+++|..|. .|...........    +.....+
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~-~Lnl~~~~~l~~~----~~i~~~L  641 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLI-YLNLEVTGRLESI----PGILLEL  641 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhh-eeccccccccccc----cchhhhc
Confidence            4889999999999889999999999999999988654421  2234455555555 5555443332222    2334457


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      ++|+.|.+....       .......+..+..+.+|+.+.++...
T Consensus       642 ~~Lr~L~l~~s~-------~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  642 QSLRVLRLPRSA-------LSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccccEEEeeccc-------cccchhhHHhhhcccchhhheeecch
Confidence            889999887543       12233445556667777777775543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.62  E-value=9e-10  Score=94.56  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      +++++.|.+..+ .+.++|++++.+++|++|......-  ...-.+|..|+.|| ++.+....   -.....+..+-++.
T Consensus        31 Mt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR-sv~~R~N~---LKnsGiP~diF~l~  103 (1255)
T KOG0444|consen   31 MTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR-SVIVRDNN---LKNSGIPTDIFRLK  103 (1255)
T ss_pred             hhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH-HHhhhccc---cccCCCCchhcccc
Confidence            455666666666 4667777777777777775422111  11122344444444 33332111   11222344556666


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT  135 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~  135 (239)
                      .|..|+++.+.          ..+++..+...++.-.|.+++++..++|..+
T Consensus       104 dLt~lDLShNq----------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~l  145 (1255)
T KOG0444|consen  104 DLTILDLSHNQ----------LREVPTNLEYAKNSIVLNLSYNNIETIPNSL  145 (1255)
T ss_pred             cceeeecchhh----------hhhcchhhhhhcCcEEEEcccCccccCCchH
Confidence            77777777432          3456666767778888888888887777543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.43  E-value=8.8e-08  Score=78.46  Aligned_cols=208  Identities=19%  Similarity=0.134  Sum_probs=97.2

Q ss_pred             CcccCcEEeCCCCCCCc-------ccCccCCCCccCCccCceEeccCCCCChhhhcccc---cccceEEEEeccCCCChh
Q 037108            3 NLIKLHHLNNPSTDSLE-------EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLI---HLQGTVCISRLENVKEIS   72 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~-------~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~---~L~~~L~~~~~~~~~~~~   72 (239)
                      +.++|++|+++++. +.       .++..++++.+|+.|++..+.... .....+..+.   +|+ .+.+.+..-.....
T Consensus        49 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~-~L~ls~~~~~~~~~  125 (319)
T cd00116          49 PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-DGCGVLESLLRSSSLQ-ELKLNNNGLGDRGL  125 (319)
T ss_pred             hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-hHHHHHHHHhccCccc-EEEeeCCccchHHH
Confidence            34557777777763 33       234556677777777764433211 1122233332   266 66665443211111


Q ss_pred             HHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcce--eeee
Q 037108           73 AAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSL--FSRY  147 (239)
Q Consensus        73 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~--~L~l  147 (239)
                      ......+..+ ++|+.|++..+....     .....+...+....+|+.|++.++....  .+.....+.....  .+.+
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L  200 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEG-----ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL  200 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCc-----hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence            2222334444 677777777554211     1122333344445577777777654321  0000000000000  0111


Q ss_pred             ccCCCceeeC---CCCCCCcCCcccEEeeccCccccc----cccC----CCCcccEEEeccccc-------cccccCCCC
Q 037108          148 ARMGKWIPHG---SGKSDEGLADLRELFLVSCSKLQR----TLLE----YLPSLETLVIRKCEQ-------LLVSILSLP  209 (239)
Q Consensus       148 ~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~L~~----~~p~----~l~~L~~L~l~~c~~-------l~~~~~~l~  209 (239)
                      .++. +....   .......+++|++|++++| .+.+    .+..    ..+.|++|.+.+|.-       +...++.++
T Consensus       201 ~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~  278 (319)
T cd00116         201 NNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE  278 (319)
T ss_pred             cCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence            1110 00000   0012335678888888876 3432    1111    236888888887752       123455667


Q ss_pred             cccEEEecccC
Q 037108          210 TLRKLTVNGCK  220 (239)
Q Consensus       210 ~L~~L~i~~c~  220 (239)
                      +|+++++++++
T Consensus       279 ~L~~l~l~~N~  289 (319)
T cd00116         279 SLLELDLRGNK  289 (319)
T ss_pred             CccEEECCCCC
Confidence            88888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.33  E-value=1.6e-08  Score=73.72  Aligned_cols=82  Identities=18%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccC-CCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNE-IGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~-~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      ++.+...|.++.+ .++.+|+.|..|++|++|+++...-. -+..+..+.+|++    +.+. +.    .-...+..++.
T Consensus        31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~----lnvg-mn----rl~~lprgfgs  100 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRI----LNVG-MN----RLNILPRGFGS  100 (264)
T ss_pred             chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhh----eecc-hh----hhhcCccccCC
Confidence            4456677888998 68999999999999999987653321 2233333333332    2221 11    12233455566


Q ss_pred             ccccccceeEEcC
Q 037108           82 KRNLKDLLLEWNN   94 (239)
Q Consensus        82 l~~L~~L~l~~~~   94 (239)
                      ++.|+.|++.+++
T Consensus       101 ~p~levldltynn  113 (264)
T KOG0617|consen  101 FPALEVLDLTYNN  113 (264)
T ss_pred             Cchhhhhhccccc
Confidence            6666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.28  E-value=4e-07  Score=74.59  Aligned_cols=209  Identities=19%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             CcccCcEEeCCCCCCC-----cccCccCCCCccCCccCceEeccCC-CCC----hhhhcccccccceEEEEeccCCCChh
Q 037108            3 NLIKLHHLNNPSTDSL-----EEMPQGIGKLTSLRTMCKFVVGNEI-GSG----LRQLKSLIHLQGTVCISRLENVKEIS   72 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~-----~~lP~~i~~L~~L~~L~~~~~~~~~-~~~----i~~L~~L~~L~~~L~~~~~~~~~~~~   72 (239)
                      .+.+|+.|++++|. +     ..++..+.+.++|++|++....... ...    ...++++++|+ .+++.+........
T Consensus        21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~   98 (319)
T cd00116          21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ-ELDLSDNALGPDGC   98 (319)
T ss_pred             HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee-EEEccCCCCChhHH
Confidence            35669999999994 5     4477778888888988765433211 111    23456666777 77776543221111


Q ss_pred             HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCC-CCcceEEEeccCCCCc-c-chhhhccCcce--eeee
Q 037108           73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPH-QSLKKLKINGYGGTKF-A-IYTLSITGDSL--FSRY  147 (239)
Q Consensus        73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-p-~~~l~l~~~~~--~L~l  147 (239)
                      ......... ++|+.|+++.+...     ......+...+... ++|+.+++.++..... + .+...+.+...  .+.+
T Consensus        99 ~~~~~l~~~-~~L~~L~ls~~~~~-----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l  172 (319)
T cd00116          99 GVLESLLRS-SSLQELKLNNNGLG-----DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL  172 (319)
T ss_pred             HHHHHHhcc-CcccEEEeeCCccc-----hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence            222222223 56999999865421     11222333445555 7999999998864421 1 11101110000  1222


Q ss_pred             ccCCCceeeC---CCCCCCcCCcccEEeeccCccccc----cc---cCCCCcccEEEecccccc----ccccC----CCC
Q 037108          148 ARMGKWIPHG---SGKSDEGLADLRELFLVSCSKLQR----TL---LEYLPSLETLVIRKCEQL----LVSIL----SLP  209 (239)
Q Consensus       148 ~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~L~~----~~---p~~l~~L~~L~l~~c~~l----~~~~~----~l~  209 (239)
                      .++ ++..-.   .+.....+++|++|++++|. +.+    .+   ...+++|++|++++|+--    .....    ..+
T Consensus       173 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         173 ANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI  250 (319)
T ss_pred             cCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence            211 011000   00112235699999999873 321    11   125789999999987621    11111    247


Q ss_pred             cccEEEecccCc
Q 037108          210 TLRKLTVNGCKE  221 (239)
Q Consensus       210 ~L~~L~i~~c~~  221 (239)
                      .|++|++.+|.-
T Consensus       251 ~L~~L~l~~n~i  262 (319)
T cd00116         251 SLLTLSLSCNDI  262 (319)
T ss_pred             CceEEEccCCCC
Confidence            899999999853

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.27  E-value=1.3e-08  Score=74.08  Aligned_cols=139  Identities=19%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      |.+|++|+.|++.++ .++++|.+|..|++|+.|+.....  -...+...+.++.|. .+++....-   .....+..+-
T Consensus        52 ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr--l~~lprgfgs~p~le-vldltynnl---~e~~lpgnff  124 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR--LNILPRGFGSFPALE-VLDLTYNNL---NENSLPGNFF  124 (264)
T ss_pred             HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh--hhcCccccCCCchhh-hhhcccccc---ccccCCcchh
Confidence            457899999999999 699999999999999999764221  112334556666555 444432211   1223344555


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      .+..|+.|+++.++          .+-++.....+.+|+.|.+..+....+|.                           
T Consensus       125 ~m~tlralyl~dnd----------fe~lp~dvg~lt~lqil~lrdndll~lpk---------------------------  167 (264)
T KOG0617|consen  125 YMTTLRALYLGDND----------FEILPPDVGKLTNLQILSLRDNDLLSLPK---------------------------  167 (264)
T ss_pred             HHHHHHHHHhcCCC----------cccCChhhhhhcceeEEeeccCchhhCcH---------------------------
Confidence            66778888887543          23345555666788888777665544443                           


Q ss_pred             CCCcCCcccEEeeccCccccccccC
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE  185 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~  185 (239)
                      .+|.+..|++|+|.+. .++ .+|.
T Consensus       168 eig~lt~lrelhiqgn-rl~-vlpp  190 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGN-RLT-VLPP  190 (264)
T ss_pred             HHHHHHHHHHHhcccc-eee-ecCh
Confidence            3456778888888865 676 6653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.18  E-value=6.6e-07  Score=76.67  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=16.9

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK   36 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~   36 (239)
                      +|.+|+.+++..| .++.+|...+...+|+.|++
T Consensus       100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen  100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDL  132 (873)
T ss_pred             cCCcceeeeeccc-hhhhcccccccccceeEEee
Confidence            4455555555555 35555554444444555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.12  E-value=1.5e-08  Score=82.77  Aligned_cols=57  Identities=28%  Similarity=0.322  Sum_probs=35.6

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEE
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCI   62 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~   62 (239)
                      .+|..|..|++.++ ...++|+.||++..++.|+.....  -..-+.+++.+..++ ++.+
T Consensus        65 ~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~-~l~~  121 (565)
T KOG0472|consen   65 KNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLV-KLDC  121 (565)
T ss_pred             hcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhh-hhhc
Confidence            35677788888888 578888888888888888653322  112334444444444 4443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.05  E-value=4.8e-08  Score=79.90  Aligned_cols=54  Identities=31%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             cCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      .++++..|++++. +++ .+|.   .+.+|++|++++..  .++..++++ .|+.|.+.+.|
T Consensus       250 ~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  250 HLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            4667777777765 676 6664   45667777776533  455566666 77777777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.99  E-value=7.7e-07  Score=79.73  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=27.5

Q ss_pred             CCCCcCCcccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC  198 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c  198 (239)
                      +.+.+|++|+.|++++. ++. .+|.    .++.|++|.+++.
T Consensus       377 p~l~~~~hLKVLhLsyN-rL~-~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYN-RLN-SFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             hhhccccceeeeeeccc-ccc-cCCHHHHhchHHhHHHhcccc
Confidence            34557999999999854 786 7875    5677777877763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=4.4e-06  Score=47.25  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             ccCcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108            5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF   37 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~   37 (239)
                      ++|++|++++| .++++|..+++|++|++|++.
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~   32 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLS   32 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEET
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEec
Confidence            57999999999 699999999999999999873

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.4e-07  Score=73.16  Aligned_cols=138  Identities=20%  Similarity=0.237  Sum_probs=79.1

Q ss_pred             hcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC
Q 037108           50 LKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT  129 (239)
Q Consensus        50 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  129 (239)
                      +.+=..|+ .+.++...+++...  ....+.+++.|..|.++|+....+     ....+...+  -++|+.|.++||...
T Consensus       230 iAkN~~L~-~lnlsm~sG~t~n~--~~ll~~scs~L~~LNlsWc~l~~~-----~Vtv~V~hi--se~l~~LNlsG~rrn  299 (419)
T KOG2120|consen  230 IAKNSNLV-RLNLSMCSGFTENA--LQLLLSSCSRLDELNLSWCFLFTE-----KVTVAVAHI--SETLTQLNLSGYRRN  299 (419)
T ss_pred             Hhccccce-eeccccccccchhH--HHHHHHhhhhHhhcCchHhhccch-----hhhHHHhhh--chhhhhhhhhhhHhh
Confidence            44444455 56665555543221  223356677888888888764321     111122222  247777788777432


Q ss_pred             CccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccc-c--CCCCcccEEEecccccccc---
Q 037108          130 KFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTL-L--EYLPSLETLVIRKCEQLLV---  203 (239)
Q Consensus       130 ~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~-p--~~l~~L~~L~l~~c~~l~~---  203 (239)
                      -.-+.+..                       -....|+|.+|++++|..++... .  ..|+.|++|.++.|-.+..   
T Consensus       300 l~~sh~~t-----------------------L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~  356 (419)
T KOG2120|consen  300 LQKSHLST-----------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL  356 (419)
T ss_pred             hhhhHHHH-----------------------HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe
Confidence            21111100                       11247788888888887766211 1  1588888888888886542   


Q ss_pred             -ccCCCCcccEEEecccC
Q 037108          204 -SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       204 -~~~~l~~L~~L~i~~c~  220 (239)
                       .+...|+|.+|++.+|-
T Consensus       357 ~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeccCcceEEEEecccc
Confidence             45677888888888874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.93  E-value=9.8e-06  Score=69.74  Aligned_cols=202  Identities=17%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             cEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcc-cccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            8 HHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKS-LIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         8 r~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~-L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      +.||+++| .+.++ +.++.+|.+|+.+++....   -+.|..++. ..|+. .|.+....    ........+..++.|
T Consensus        81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~-~L~L~~N~----I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLE-KLDLRHNL----ISSVTSEELSALPAL  151 (873)
T ss_pred             eeeecccc-ccccCcHHHHhcCCcceeeeeccch---hhhccccccccccee-EEeeeccc----cccccHHHHHhHhhh
Confidence            56888888 46655 4667888888877653211   112222211 11222 33332111    222233456666778


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHh-hcCCCCCCcceEEEeccCCCCccc-hhhhccCccee--eeec--cCCCceeeCCC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVL-DLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLF--SRYA--RMGKWIPHGSG  159 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~--L~l~--~~~~l~~~~~~  159 (239)
                      +.|+++.+....          +. .+.....++++|.+.++....+-. .+..+.   .+  +++.  .+..+.    +
T Consensus       152 rslDLSrN~is~----------i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNrittLp----~  214 (873)
T KOG4194|consen  152 RSLDLSRNLISE----------IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNRITTLP----Q  214 (873)
T ss_pred             hhhhhhhchhhc----------ccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCcccccC----H
Confidence            888887443111          11 111223588888888775433221 000000   00  1110  111111    1


Q ss_pred             CCCCcCCcccEEeeccCccccccc----cCCCCcccEEEeccc--ccccc-ccCCCCcccEEEecccCccccccccccCc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTL----LEYLPSLETLVIRKC--EQLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSS  232 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~----p~~l~~L~~L~l~~c--~~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l  232 (239)
                      ..+..+|+|+.|++... +++ .+    -..+|+|+.|++...  ..+.. .+..+.++++|++.-..--..-.+.+=.|
T Consensus       215 r~Fk~L~~L~~LdLnrN-~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRN-RIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             HHhhhcchhhhhhcccc-cee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            23345667777777543 332 11    125667777666532  23433 34556677777766543333334444444


Q ss_pred             cceEe
Q 037108          233 SSVVL  237 (239)
Q Consensus       233 ~~L~~  237 (239)
                      ++|+.
T Consensus       293 t~L~~  297 (873)
T KOG4194|consen  293 TSLEQ  297 (873)
T ss_pred             chhhh
Confidence            44443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.92  E-value=8.4e-07  Score=79.51  Aligned_cols=114  Identities=23%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeee-eccCC
Q 037108           73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSR-YARMG  151 (239)
Q Consensus        73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~-l~~~~  151 (239)
                      +.....+.++.+|+.|+++++.....         -...+..+..|+.|.++|+.-.++|..+....-    |+ +.-..
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~f---------pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~----L~tL~ahs  439 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSF---------PASKLRKLEELEELNLSGNKLTTLPDTVANLGR----LHTLRAHS  439 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccC---------CHHHHhchHHhHHHhcccchhhhhhHHHHhhhh----hHHHhhcC
Confidence            34445677889999999998753210         012345567899999999988788865422110    00 00111


Q ss_pred             CceeeCCCCCCCcCCcccEEeeccCcccc-ccccCCC--CcccEEEeccccccc
Q 037108          152 KWIPHGSGKSDEGLADLRELFLVSCSKLQ-RTLLEYL--PSLETLVIRKCEQLL  202 (239)
Q Consensus       152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~-~~~p~~l--~~L~~L~l~~c~~l~  202 (239)
                      |.-..  .+.+..++.|+.++++ |++|. +.+|...  |+|++|++++...+.
T Consensus       440 N~l~~--fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  440 NQLLS--FPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             Cceee--chhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            11111  2366778999999998 66776 2334422  799999999887653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.91  E-value=2.7e-05  Score=70.65  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      +|+.|++++| .++.+|..+.  .+|++|++....-..  ....+.  ..|+ .|.+.+.. +...    +..+  .++|
T Consensus       200 ~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~-~L~Ls~N~-L~~L----P~~l--~s~L  264 (754)
T PRK15370        200 QITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQ-EMELSINR-ITEL----PERL--PSAL  264 (754)
T ss_pred             CCcEEEecCC-CCCcCChhhc--cCCCEEECCCCcccc--CChhhh--cccc-EEECcCCc-cCcC----ChhH--hCCC
Confidence            5677777777 4677776554  467777654322110  001111  1233 44443221 1111    1111  1357


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCCc
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDEG  164 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~~  164 (239)
                      +.|+++.+...          .++..+  +.+|+.|+++++....+|..+. .+.    .|.+.+. .+..+  |  ...
T Consensus       265 ~~L~Ls~N~L~----------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~----~L~Ls~N-~Lt~L--P--~~l  323 (754)
T PRK15370        265 QSLDLFHNKIS----------CLPENL--PEELRYLSVYDNSIRTLPAHLPSGIT----HLNVQSN-SLTAL--P--ETL  323 (754)
T ss_pred             CEEECcCCccC----------cccccc--CCCCcEEECCCCccccCcccchhhHH----HHHhcCC-ccccC--C--ccc
Confidence            77777644321          122222  2478888888876655554321 000    1222111 11111  1  123


Q ss_pred             CCcccEEeeccCccccccccC-CCCcccEEEeccccc--cccccCCCCcccEEEecccCccccccc
Q 037108          165 LADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEVVGRAI  227 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l~~~~~  227 (239)
                      +++|+.|++.+| .++ .+|. ..++|+.|+++++.-  ++..+  .++|++|++++|. +...|.
T Consensus       324 ~~sL~~L~Ls~N-~Lt-~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~  384 (754)
T PRK15370        324 PPGLKTLEAGEN-ALT-SLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPE  384 (754)
T ss_pred             cccceeccccCC-ccc-cCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCH
Confidence            578999999987 576 6775 346999999988752  22222  3689999999974 444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.85  E-value=9.1e-06  Score=73.69  Aligned_cols=183  Identities=14%  Similarity=0.097  Sum_probs=98.2

Q ss_pred             ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      .+|++|++++| .++.+|..+.  .+|+.|++..+...  .....+.  +.|+ .|.+... .+.    ..+..+.  ++
T Consensus       220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~-~L~Ls~N-~L~----~LP~~l~--~s  284 (754)
T PRK15370        220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRIT--ELPERLP--SALQ-SLDLFHN-KIS----CLPENLP--EE  284 (754)
T ss_pred             cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccC--cCChhHh--CCCC-EEECcCC-ccC----ccccccC--CC
Confidence            47999999999 5889998764  46888876543221  1111121  2455 5555422 111    1122222  36


Q ss_pred             cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCC
Q 037108           85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      |+.|.++.+....          ++..+  +.+|+.|++.++....+|..+. .+.    .|.+.++ .+..+  |.  .
T Consensus       285 L~~L~Ls~N~Lt~----------LP~~l--p~sL~~L~Ls~N~Lt~LP~~l~~sL~----~L~Ls~N-~Lt~L--P~--~  343 (754)
T PRK15370        285 LRYLSVYDNSIRT----------LPAHL--PSGITHLNVQSNSLTALPETLPPGLK----TLEAGEN-ALTSL--PA--S  343 (754)
T ss_pred             CcEEECCCCcccc----------Ccccc--hhhHHHHHhcCCccccCCccccccce----eccccCC-ccccC--Ch--h
Confidence            8888887553211          11111  2356667777665544443220 000    1222221 11111  11  1


Q ss_pred             cCCcccEEeeccCccccccccC-CCCcccEEEeccccccccccCCC-CcccEEEecccCccccccc
Q 037108          164 GLADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLLVSILSL-PTLRKLTVNGCKEVVGRAI  227 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~~~~~~l-~~L~~L~i~~c~~l~~~~~  227 (239)
                      ..++|+.|++++| +++ .+|. ..++|+.|++++|. +......+ ++|+.|++++| ++..+|.
T Consensus       344 l~~sL~~L~Ls~N-~L~-~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP~  405 (754)
T PRK15370        344 LPPELQVLDVSKN-QIT-VLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLPE  405 (754)
T ss_pred             hcCcccEEECCCC-CCC-cCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCch
Confidence            2479999999987 676 6765 34699999999875 32222222 36889998885 4444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.80  E-value=0.00013  Score=66.30  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=18.9

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF   37 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~   37 (239)
                      -..|+++++ .++.+|+.+..  +|+.|++.
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~~--~L~~L~L~  230 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLPA--HITTLVIP  230 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchhc--CCCEEEcc
Confidence            456788887 57788877753  66666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.80  E-value=0.00011  Score=66.74  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceE
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFV   38 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~   38 (239)
                      +|+.|++.+| .++.+|..   +.+|++|++..
T Consensus       223 ~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~  251 (788)
T PRK15387        223 HITTLVIPDN-NLTSLPAL---PPELRTLEVSG  251 (788)
T ss_pred             CCCEEEccCC-cCCCCCCC---CCCCcEEEecC
Confidence            5788888887 57888853   46777776643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.76  E-value=7.7e-05  Score=45.37  Aligned_cols=53  Identities=30%  Similarity=0.404  Sum_probs=40.6

Q ss_pred             CcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEecccC
Q 037108          166 ADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c~  220 (239)
                      |+|++|++++| +++ .+|.    .+++|++|+++++.  .++ ..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            67899999987 776 6663    57899999998655  232 256788999999998874

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.58  E-value=5.3e-05  Score=56.46  Aligned_cols=14  Identities=29%  Similarity=0.406  Sum_probs=4.8

Q ss_pred             CCCcccEEEecccc
Q 037108          186 YLPSLETLVIRKCE  199 (239)
Q Consensus       186 ~l~~L~~L~l~~c~  199 (239)
                      .+|+|+.|.+.+.|
T Consensus       111 ~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  111 SLPKLRVLSLEGNP  124 (175)
T ss_dssp             G-TT--EEE-TT-G
T ss_pred             cCCCcceeeccCCc
Confidence            35555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.57  E-value=7.6e-06  Score=60.94  Aligned_cols=112  Identities=23%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CcccCcEEeCCCCCCCcccCccCC-CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIG-KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~-~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +..++|.|+++++ .+..+. .++ .+.+|++|++....   -..+..+..+++|+ .|.+.+.. +.+.....   ...
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~---I~~l~~l~~L~~L~-~L~L~~N~-I~~i~~~l---~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQ---ITKLEGLPGLPRLK-TLDLSNNR-ISSISEGL---DKN   86 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS-----S--TT----TT---EEE--SS----S-CHHH---HHH
T ss_pred             ccccccccccccc-cccccc-chhhhhcCCCEEECCCCC---CccccCccChhhhh-hcccCCCC-CCccccch---HHh
Confidence            4557899999999 577774 576 58889988763322   22344455556566 66654322 11121111   124


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA  132 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p  132 (239)
                      +++|+.|+++.+....        ..-+..+..+++|+.|++.+++....+
T Consensus        87 lp~L~~L~L~~N~I~~--------l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   87 LPNLQELYLSNNKISD--------LNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             -TT--EEE-TTS---S--------CCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             CCcCCEEECcCCcCCC--------hHHhHHHHcCCCcceeeccCCcccchh
Confidence            6789999987543211        111345556789999999988654433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=6.8e-05  Score=67.53  Aligned_cols=86  Identities=22%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH---hcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE---AQL   79 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~---~~l   79 (239)
                      ++++|+.||++++ +++.+ .+|++|++||+|.+..........+.+|=+|++|+ .|+++.-...... ....   +.-
T Consensus       171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~-~ii~qYlec~  246 (699)
T KOG3665|consen  171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDT-KIIEQYLECG  246 (699)
T ss_pred             ccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC-eeeccccccccch-HHHHHHHHhc
Confidence            6889999999999 58888 78999999999987766666667788888888888 8888754433222 1111   222


Q ss_pred             CcccccccceeEE
Q 037108           80 NGKRNLKDLLLEW   92 (239)
Q Consensus        80 ~~l~~L~~L~l~~   92 (239)
                      ..+++|+.|+.+.
T Consensus       247 ~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  247 MVLPELRFLDCSG  259 (699)
T ss_pred             ccCccccEEecCC
Confidence            3377888888773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.37  E-value=0.00038  Score=42.24  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             CCCCcCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE  199 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~  199 (239)
                      ..+..+++|++|+++++ +++ .++.    .+++|++|++++++
T Consensus        19 ~~f~~l~~L~~L~l~~N-~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   19 DSFSNLPNLETLDLSNN-NLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTTTGTTESEEEETSS-SES-EEETTTTTTSTTESEEEETSSS
T ss_pred             HHHcCCCCCCEeEccCC-ccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            44577999999999965 676 5553    68999999998864

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.34  E-value=6.7e-05  Score=35.56  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=18.8

Q ss_pred             cCcEEeCCCCCCCcccCccCCCC
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKL   28 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L   28 (239)
                      +||+||+++| .++++|+++++|
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT-
T ss_pred             CccEEECCCC-cCEeCChhhcCC
Confidence            6899999999 689999988765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.25  E-value=2e-05  Score=64.70  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--cccc-ccCCCCcccEEEecccCccccccccccCccce
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSSSSV  235 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L  235 (239)
                      +..+|+|+.|++++. ++++.-+.   ....+++|.+....  .+.+ .+.++..|+.|++++..--..-++.+..+.+|
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            456889999999865 67622222   35667777775533  2222 45677888888888865555555555554444


Q ss_pred             E
Q 037108          236 V  236 (239)
Q Consensus       236 ~  236 (239)
                      .
T Consensus       349 ~  349 (498)
T KOG4237|consen  349 S  349 (498)
T ss_pred             e
Confidence            3

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00012  Score=61.04  Aligned_cols=36  Identities=19%  Similarity=0.115  Sum_probs=24.6

Q ss_pred             CCcccCcEEeCCCCCCCcccCc--cCCCCccCCccCceE
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFV   38 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~   38 (239)
                      +++++||...++++ .+...|.  -+..+.+++.||++.
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~  155 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSR  155 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchh
Confidence            36778888888888 4665553  456677777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.20  E-value=0.00017  Score=58.34  Aligned_cols=187  Identities=24%  Similarity=0.221  Sum_probs=103.0

Q ss_pred             cCcEEeCCCCCCCcccCc----cCCCCccCCccCceEeccC--CCCChhh----------hcccccccceEEEEeccCCC
Q 037108            6 KLHHLNNPSTDSLEEMPQ----GIGKLTSLRTMCKFVVGNE--IGSGLRQ----------LKSLIHLQGTVCISRLENVK   69 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~----~i~~L~~L~~L~~~~~~~~--~~~~i~~----------L~~L~~L~~~L~~~~~~~~~   69 (239)
                      +|++|+||+|-.-..-++    =|...++|++|.+..+...  .+..+..          .+.=+.|| .+.+....--.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNrlen  171 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR-VFICGRNRLEN  171 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE-EEEeecccccc
Confidence            789999999853222222    2556788888877554421  1111111          12222233 33332211111


Q ss_pred             ChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeecc
Q 037108           70 EISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYAR  149 (239)
Q Consensus        70 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~  149 (239)
                      .........++..+.|+.+.+..+..     .......+.+.+...++|+.|++..+....--+-.           +  
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I-----~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-----------L--  233 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGI-----RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-----------L--  233 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccc-----cCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------H--
Confidence            12223334455556788888775532     12223345666777788888888765322111000           0  


Q ss_pred             CCCceeeCCCCCCCcCCcccEEeeccCcccc--cc------ccCCCCcccEEEeccccc-------cccccCCCCcccEE
Q 037108          150 MGKWIPHGSGKSDEGLADLRELFLVSCSKLQ--RT------LLEYLPSLETLVIRKCEQ-------LLVSILSLPTLRKL  214 (239)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~--~~------~p~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L  214 (239)
                               ......+++|+.+.+++| .++  |.      +...+|+|+.|.+.++.-       +...+...|.|+.|
T Consensus       234 ---------akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL  303 (382)
T KOG1909|consen  234 ---------AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL  303 (382)
T ss_pred             ---------HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence                     012234778999999999 444  22      234689999999988762       11234568899999


Q ss_pred             EecccCc
Q 037108          215 TVNGCKE  221 (239)
Q Consensus       215 ~i~~c~~  221 (239)
                      .+++|..
T Consensus       304 nLngN~l  310 (382)
T KOG1909|consen  304 NLNGNRL  310 (382)
T ss_pred             cCCcccc
Confidence            9998764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.20  E-value=0.0012  Score=55.59  Aligned_cols=14  Identities=14%  Similarity=0.325  Sum_probs=8.9

Q ss_pred             CCCcceEEEeccCC
Q 037108          115 HQSLKKLKINGYGG  128 (239)
Q Consensus       115 ~~~L~~L~l~~~~~  128 (239)
                      +.+|+.|.+.+|..
T Consensus        71 P~sLtsL~Lsnc~n   84 (426)
T PRK15386         71 PNELTEITIENCNN   84 (426)
T ss_pred             CCCCcEEEccCCCC
Confidence            34677777776543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00016  Score=60.26  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             CCcCCcccEEeeccCccccccc--c--------CCCCcccEEEecccc
Q 037108          162 DEGLADLRELFLVSCSKLQRTL--L--------EYLPSLETLVIRKCE  199 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~--p--------~~l~~L~~L~l~~c~  199 (239)
                      .+.||.|+.|.+++| .+. ++  |        ..||+|++|.+...+
T Consensus       267 ~~~l~~L~~Lnls~t-gi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSST-GIA-SIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccchhhhhcccc-Ccc-hhcCCCccchhhhcccccceeeecccCc
Confidence            345666666666554 222 11  1        146777777665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=5e-05  Score=60.38  Aligned_cols=128  Identities=17%  Similarity=0.179  Sum_probs=77.1

Q ss_pred             ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCcee--
Q 037108           78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIP--  155 (239)
Q Consensus        78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~--  155 (239)
                      .+..+++|+.|++.....         ...+...++.-.+|+.++++++.|..--..-         +-+..|..+..  
T Consensus       205 iLs~C~kLk~lSlEg~~L---------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---------ll~~scs~L~~LN  266 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRL---------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---------LLLSSCSRLDELN  266 (419)
T ss_pred             HHHHHHhhhhcccccccc---------CcHHHHHHhccccceeeccccccccchhHHH---------HHHHhhhhHhhcC
Confidence            345566777777663322         2334555566678888888877664421100         11222222221  


Q ss_pred             --eCCC--C-----CCCcCCcccEEeeccCccccc-----cccCCCCcccEEEecccccccc----ccCCCCcccEEEec
Q 037108          156 --HGSG--K-----SDEGLADLRELFLVSCSKLQR-----TLLEYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVN  217 (239)
Q Consensus       156 --~~~~--~-----~~~~~~~L~~L~l~~~~~L~~-----~~p~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~  217 (239)
                        |+..  +     -..--++|+.|++++|.+--+     .+....|+|..|++++|-.+..    .+-.|+.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence              2210  0     011246888999998864221     2234689999999999987754    56689999999999


Q ss_pred             ccCccc
Q 037108          218 GCKEVV  223 (239)
Q Consensus       218 ~c~~l~  223 (239)
                      .|-.+.
T Consensus       347 RCY~i~  352 (419)
T KOG2120|consen  347 RCYDII  352 (419)
T ss_pred             hhcCCC
Confidence            997665

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.72  E-value=0.0017  Score=54.72  Aligned_cols=61  Identities=23%  Similarity=0.453  Sum_probs=38.5

Q ss_pred             CcccEEeeccCccccccccCCC-CcccEEEeccccccccccCCCCcccEEEecc--cCcccccccccc
Q 037108          166 ADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCEQLLVSILSLPTLRKLTVNG--CKEVVGRAINLS  230 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~--c~~l~~~~~~~~  230 (239)
                      ++|++|.+++|.+++ .+|..+ ++|++|.+.+|..++. ++  ++|+.|.+..  |..+..+|..+.
T Consensus        72 ~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~s-LP--~sLe~L~L~~n~~~~L~~LPssLk  135 (426)
T PRK15386         72 NELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEISG-LP--ESVRSLEIKGSATDSIKNVPNGLT  135 (426)
T ss_pred             CCCcEEEccCCCCcc-cCCchhhhhhhheEccCcccccc-cc--cccceEEeCCCCCcccccCcchHh
Confidence            368888888888886 777533 4788888888876632 22  3566666653  333444444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.45  E-value=0.0036  Score=53.00  Aligned_cols=59  Identities=31%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             CCcCCcccEEeeccCccccc--cccCCCCcccEEEeccccc--cccccCCCCcccEEEecccCcc
Q 037108          162 DEGLADLRELFLVSCSKLQR--TLLEYLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~--~~p~~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l  222 (239)
                      ...+.++..+.+.+. +++.  .....++++++|++.++.-  +. .++.+.+++.+++++..-.
T Consensus       228 ~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         228 LSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             hhhcccccccccCCc-eeeeccchhccccccceeccccccccccc-cccccCccCEEeccCcccc
Confidence            345666666665533 4431  1223577788998877552  32 3677888999998875443

>PLN03150 hypothetical protein; Provisional

Probab=96.27  E-value=0.0037  Score=56.22  Aligned_cols=82  Identities=20%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      ++.|+|+++..-+.+|..|++|++|++|++..... .+.....++++++|+ .|++....    .....+..+.++++|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l-~g~iP~~~~~l~~L~-~LdLs~N~----lsg~iP~~l~~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITSLE-VLDLSYNS----FNGSIPESLGQLTSLR  493 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCC-EEECCCCC----CCCCCchHHhcCCCCC
Confidence            67788888865557888888888888887754322 223334566677666 66654332    2223344566677788


Q ss_pred             cceeEEcC
Q 037108           87 DLLLEWNN   94 (239)
Q Consensus        87 ~L~l~~~~   94 (239)
                      .|+++.+.
T Consensus       494 ~L~Ls~N~  501 (623)
T PLN03150        494 ILNLNGNS  501 (623)
T ss_pred             EEECcCCc
Confidence            87777554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.20  E-value=0.0082  Score=33.74  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=7.2

Q ss_pred             cCCCCcccEEEeccc
Q 037108          205 ILSLPTLRKLTVNGC  219 (239)
Q Consensus       205 ~~~l~~L~~L~i~~c  219 (239)
                      +..+++|++|+++++
T Consensus        20 l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   20 LSNLPNLETLNLSNN   34 (44)
T ss_dssp             GTTCTTSSEEEETSS
T ss_pred             HhCCCCCCEEEecCC
Confidence            444444444444444

...

>PLN03150 hypothetical protein; Provisional

Probab=96.19  E-value=0.004  Score=56.03  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEec
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRL   65 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~   65 (239)
                      |++|.+|++|++++|...+.+|..++++++|++|++..... .+.....++++++|+ .|.+...
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~-~L~Ls~N  500 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLR-ILNLNGN  500 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCC-EEECcCC
Confidence            35789999999999965568999999999999998865432 334456688888888 7877543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.99  E-value=0.0011  Score=53.09  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=64.3

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      -|..+|+++| .++++-+++.-+..++.|++..      ..+..+++|.+|. .|...++.+.. ..... ..=.++-|+
T Consensus       285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~------N~i~~v~nLa~L~-~L~~LDLS~N~-Ls~~~-Gwh~KLGNI  354 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQ------NRIRTVQNLAELP-QLQLLDLSGNL-LAECV-GWHLKLGNI  354 (490)
T ss_pred             hhhhcccccc-chhhhhhhhhhccceeEEeccc------cceeeehhhhhcc-cceEeecccch-hHhhh-hhHhhhcCE
Confidence            4677888888 4777777777777777776532      2233333333333 23222222211 11000 000123355


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL  165 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~  165 (239)
                      ++|.+..+           ..+.+..++.+-.|..|++.+++..+.                      ..+   ..+|.+
T Consensus       355 KtL~La~N-----------~iE~LSGL~KLYSLvnLDl~~N~Ie~l----------------------deV---~~IG~L  398 (490)
T KOG1259|consen  355 KTLKLAQN-----------KIETLSGLRKLYSLVNLDLSSNQIEEL----------------------DEV---NHIGNL  398 (490)
T ss_pred             eeeehhhh-----------hHhhhhhhHhhhhheeccccccchhhH----------------------HHh---cccccc
Confidence            66655522           122234444455666666666543221                      111   356789


Q ss_pred             CcccEEeeccCc
Q 037108          166 ADLRELFLVSCS  177 (239)
Q Consensus       166 ~~L~~L~l~~~~  177 (239)
                      |+|+.+.+.+.|
T Consensus       399 PCLE~l~L~~NP  410 (490)
T KOG1259|consen  399 PCLETLRLTGNP  410 (490)
T ss_pred             cHHHHHhhcCCC
Confidence            999998888765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.78  E-value=0.0061  Score=51.60  Aligned_cols=169  Identities=18%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCc-cCCccCceEeccCCCCCh-hhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLT-SLRTMCKFVVGNEIGSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~-~L~~L~~~~~~~~~~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      .+..++.|++.++ .+.++|+.++.+. +|+.|++.....   ..+ ..++.+++|+ .|.+....-    . ..+....
T Consensus       114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~-~L~l~~N~l----~-~l~~~~~  183 (394)
T COG4886         114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLK-NLDLSFNDL----S-DLPKLLS  183 (394)
T ss_pred             cccceeEEecCCc-ccccCccccccchhhcccccccccch---hhhhhhhhcccccc-ccccCCchh----h-hhhhhhh
Confidence            3467889999988 5899999898886 999998743322   122 3456666666 565543221    1 1122222


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      ..++|+.|+++.+..          ..+......+..|+.+.+.++.....+..+.....    +....+.+......+.
T Consensus       184 ~~~~L~~L~ls~N~i----------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~----l~~l~l~~n~~~~~~~  249 (394)
T COG4886         184 NLSNLNNLDLSGNKI----------SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN----LSGLELSNNKLEDLPE  249 (394)
T ss_pred             hhhhhhheeccCCcc----------ccCchhhhhhhhhhhhhhcCCcceecchhhhhccc----ccccccCCceeeeccc
Confidence            556788888774432          11121112233566777766643333322111000    0000111111111124


Q ss_pred             CCCcCCcccEEeeccCccccccccC--CCCcccEEEecc
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRK  197 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~  197 (239)
                      ..+.+++++.|++.++ .+. .++.  .+.+++.|++.+
T Consensus       250 ~~~~l~~l~~L~~s~n-~i~-~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         250 SIGNLSNLETLDLSNN-QIS-SISSLGSLTNLRELDLSG  286 (394)
T ss_pred             hhccccccceeccccc-ccc-ccccccccCccCEEeccC
Confidence            4566777888888755 554 5543  456777777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.66  E-value=0.0058  Score=26.78  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=11.6

Q ss_pred             ccCcEEeCCCCCCCcccC
Q 037108            5 IKLHHLNNPSTDSLEEMP   22 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP   22 (239)
                      ++|+.|++++|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            479999999995 88887

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.65  E-value=0.0013  Score=54.74  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             cCcEEeCCCCCCCcccC--ccCCCCccCCccCceEeccCCCCChhhhc-ccccccceEEEEeccCCCChhHHH-HhccCc
Q 037108            6 KLHHLNNPSTDSLEEMP--QGIGKLTSLRTMCKFVVGNEIGSGLRQLK-SLIHLQGTVCISRLENVKEISAAK-EAQLNG   81 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~~~~~i~~L~-~L~~L~~~L~~~~~~~~~~~~~~~-~~~l~~   81 (239)
                      .||.|.++||..++.=|  .--.+-.+.++|.++++..........+. ..+.++ .+....+.+   ..+.. ......
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~-~l~L~~c~~---iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR-HLNLHSCSS---ITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh-hhhhcccch---hHHHHHHHHHHh
Confidence            47788888885443322  22345566777777666544333333332 233333 333333222   22222 223446


Q ss_pred             ccccccceeEEcCCC
Q 037108           82 KRNLKDLLLEWNNST   96 (239)
Q Consensus        82 l~~L~~L~l~~~~~~   96 (239)
                      +++|+++.++|+...
T Consensus       215 C~kL~~lNlSwc~qi  229 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQI  229 (483)
T ss_pred             hhhHHHhhhccCchh
Confidence            788999999998643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.62  E-value=0.0015  Score=53.99  Aligned_cols=51  Identities=16%  Similarity=0.119  Sum_probs=32.6

Q ss_pred             CCCcccEEEecccc--cccc-ccCCCCcccEEEecccCccccccccccCccceE
Q 037108          186 YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       186 ~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      .+|+|+.|++++..  .++. ++.....+++|.+.+..--....+.+..+..|+
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~  325 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK  325 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence            57888889887755  2322 677888999999887543333344444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.59  E-value=0.0071  Score=54.83  Aligned_cols=91  Identities=18%  Similarity=0.146  Sum_probs=45.5

Q ss_pred             CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchH
Q 037108           27 KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDT  106 (239)
Q Consensus        27 ~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  106 (239)
                      ++.||..||+.+++-   ..+..+++|++|+ .|.+.+++-..   ......+..+++|+.|+++.......   .....
T Consensus       171 sFpNL~sLDIS~TnI---~nl~GIS~LknLq-~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~---~~ii~  240 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNI---SNLSGISRLKNLQ-VLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDD---TKIIE  240 (699)
T ss_pred             ccCccceeecCCCCc---cCcHHHhccccHH-HHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccc---hHHHH
Confidence            455555555543322   2223444455555 55554444211   11123455677788888875443211   11233


Q ss_pred             HHhhcCCCCCCcceEEEeccC
Q 037108          107 CVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus       107 ~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      ..++.-..+|+|+.|+.++..
T Consensus       241 qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  241 QYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHHHhcccCccccEEecCCcc
Confidence            444555556788888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.0025  Score=48.02  Aligned_cols=59  Identities=27%  Similarity=0.451  Sum_probs=35.5

Q ss_pred             cCCcccEEeeccCccccc----cccCCCCcccEEEecccccccc----ccCCCCcccEEEecccCcc
Q 037108          164 GLADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c~~l  222 (239)
                      .+++++.|.+.+|..+..    -+....|+|+.|+|++|+.+++    .+..+++|+.|.+.+.+..
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            355666666666655431    2222467777777777777654    3456677777777666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.90  E-value=0.019  Score=28.03  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             cccCcEEeCCCCCCCcccCccCC
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIG   26 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~   26 (239)
                      |++|++|++++| .++.+|.++.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            578999999999 6999998653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.90  E-value=0.019  Score=28.03  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             cccCcEEeCCCCCCCcccCccCC
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIG   26 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~   26 (239)
                      |++|++|++++| .++.+|.++.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            578999999999 6999998653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.72  E-value=0.014  Score=50.70  Aligned_cols=105  Identities=19%  Similarity=0.134  Sum_probs=49.4

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      +.|-++++ +++.+|++||-+..|..||...+.  ......+++.|+.|+ .+.+..     ......+.++..+ .|..
T Consensus       146 kvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne--i~slpsql~~l~slr-~l~vrR-----n~l~~lp~El~~L-pLi~  215 (722)
T KOG0532|consen  146 KVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE--IQSLPSQLGYLTSLR-DLNVRR-----NHLEDLPEELCSL-PLIR  215 (722)
T ss_pred             eeEEEecC-ccccCCcccccchhHHHhhhhhhh--hhhchHHhhhHHHHH-HHHHhh-----hhhhhCCHHHhCC-ceee
Confidence            33444444 467777777766666666543322  123344555555555 332211     1111222333333 2555


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA  132 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p  132 (239)
                      |+++.++.          ..++..+..+.+|+.|.+.++.....|
T Consensus       216 lDfScNki----------s~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  216 LDFSCNKI----------SYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             eecccCce----------eecchhhhhhhhheeeeeccCCCCCCh
Confidence            55553321          123444555666777777666543333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.69  E-value=0.012  Score=51.07  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=17.0

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK   36 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~   36 (239)
                      .|..+.+..+ .+..+|..|++|..|.+|++
T Consensus        99 ~Le~liLy~n-~~r~ip~~i~~L~~lt~l~l  128 (722)
T KOG0532|consen   99 SLESLILYHN-CIRTIPEAICNLEALTFLDL  128 (722)
T ss_pred             HHHHHHHHhc-cceecchhhhhhhHHHHhhh
Confidence            3444455444 25666666666666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.29  E-value=0.027  Score=44.16  Aligned_cols=11  Identities=27%  Similarity=0.277  Sum_probs=5.1

Q ss_pred             CCccCCccCce
Q 037108           27 KLTSLRTMCKF   37 (239)
Q Consensus        27 ~L~~L~~L~~~   37 (239)
                      .|.+|++|.++
T Consensus        63 ~Lp~LkkL~ls   73 (260)
T KOG2739|consen   63 KLPKLKKLELS   73 (260)
T ss_pred             Ccchhhhhccc
Confidence            34455555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.40  E-value=0.34  Score=36.94  Aligned_cols=14  Identities=36%  Similarity=0.679  Sum_probs=7.0

Q ss_pred             cCCCCcccEEEecc
Q 037108          205 ILSLPTLRKLTVNG  218 (239)
Q Consensus       205 ~~~l~~L~~L~i~~  218 (239)
                      +..+|+|+.|++++
T Consensus       136 l~klp~l~~LDF~k  149 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQK  149 (233)
T ss_pred             EEecCcceEeehhh
Confidence            34455555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.56  E-value=0.024  Score=42.83  Aligned_cols=56  Identities=14%  Similarity=0.060  Sum_probs=39.6

Q ss_pred             eeeccCCCceeeCCCCCCCcCCcccEEeeccCcccccccc----CCCCcccEEEecccccc
Q 037108          145 SRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQL  201 (239)
Q Consensus       145 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~l  201 (239)
                      +.+..|..+..|+...-.+.+++|+.|++++|++.+ .-.    ..+++|+.|.+.+.+..
T Consensus       130 l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  130 LSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             heeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHHHHhcCchhh
Confidence            455556666666532223468999999999999887 221    25899999999988753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.40  E-value=0.17  Score=41.57  Aligned_cols=207  Identities=15%  Similarity=0.035  Sum_probs=96.4

Q ss_pred             cccCcEEeCCCCCCCcc----cCccCCCCccCCccCceEeccCC--CCChh-------hhcccccccceEEEEeccCCCC
Q 037108            4 LIKLHHLNNPSTDSLEE----MPQGIGKLTSLRTMCKFVVGNEI--GSGLR-------QLKSLIHLQGTVCISRLENVKE   70 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~----lP~~i~~L~~L~~L~~~~~~~~~--~~~i~-------~L~~L~~L~~~L~~~~~~~~~~   70 (239)
                      ...+.+++++|+..-++    +-+.+.+.++|+.-+.....-..  ...+.       .|..-.+|+ .+++++.---..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~-~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ-KLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee-EeeccccccCcc
Confidence            45678888888853221    44445566666554432211000  00111       122222344 444443211111


Q ss_pred             hhHHHHhccCcccccccceeEEcCCCCCCC----CCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeee
Q 037108           71 ISAAKEAQLNGKRNLKDLLLEWNNSTSNIR----EPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSR  146 (239)
Q Consensus        71 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~  146 (239)
                      .......-+++...|++|++.-|.......    ......+.......++.|+.+....+.....+..-..       ..
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A-------~~  180 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA-------EA  180 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH-------HH
Confidence            222333445556778888776332211000    0000011223344456777777766654333321100       11


Q ss_pred             eccCCCceeeCC------CC-------CCCcCCcccEEeeccCcccc--cc------ccCCCCcccEEEeccccccc---
Q 037108          147 YARMGKWIPHGS------GK-------SDEGLADLRELFLVSCSKLQ--RT------LLEYLPSLETLVIRKCEQLL---  202 (239)
Q Consensus       147 l~~~~~l~~~~~------~~-------~~~~~~~L~~L~l~~~~~L~--~~------~p~~l~~L~~L~l~~c~~l~---  202 (239)
                      +..++.++.+..      +.       .+..+|+|+.|++.+.. ++  |.      +| .||.|+.|.+.+|--=.   
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALS-SWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhc-ccchheeecccccccccccH
Confidence            122233333221      11       23347888888888763 22  21      23 57888888888886211   


Q ss_pred             ----c-ccCCCCcccEEEecccC
Q 037108          203 ----V-SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       203 ----~-~~~~l~~L~~L~i~~c~  220 (239)
                          . .-...|+|+.+.+.+|.
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcch
Confidence                1 11347888888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.90  E-value=0.059  Score=43.50  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCCh-hhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+|.|+++.| .+..+-. +..|.+|+.||+....-....+. ..+++..    .|.+..  +   .-+ ....++++
T Consensus       306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK----tL~La~--N---~iE-~LSGL~KL  373 (490)
T KOG1259|consen  306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK----TLKLAQ--N---KIE-TLSGLRKL  373 (490)
T ss_pred             ccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEe----eeehhh--h---hHh-hhhhhHhh
Confidence            567899999999 5776664 77888888888754322111111 1233333    222210  0   000 01223344


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY  134 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~  134 (239)
                      =+|..|+++.+.        ....+-...++.++.|+.+.+.+++....|+.
T Consensus       374 YSLvnLDl~~N~--------Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  374 YSLVNLDLSSNQ--------IEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhheeccccccc--------hhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            455556655332        11223345667777788888877766555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.67  E-value=0.2  Score=42.83  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF   37 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~   37 (239)
                      +.+++|++|++.++ .++.+...+..+.+|++|++.
T Consensus        92 ~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   92 SKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLS  126 (414)
T ss_pred             ccccceeeeecccc-chhhcccchhhhhcchheecc
Confidence            46778888888888 577777667888888888764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=87.18  E-value=0.036  Score=49.84  Aligned_cols=50  Identities=32%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             ccEEeeccCccccccccC--CCCcccEEEecccc-----ccccccCCCCcccEEEecccC
Q 037108          168 LRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE-----QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       168 L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~-----~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      |..|.+++. .++ .+-.  .+.+|+.|++++.-     ++ +-+..+..|..|++.+.|
T Consensus       234 L~~L~lrnN-~l~-tL~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  234 LQLLNLRNN-ALT-TLRGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             heeeeeccc-HHH-hhhhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence            555555533 333 2221  45566666665321     11 123345566667766654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.10  E-value=0.066  Score=44.96  Aligned_cols=56  Identities=21%  Similarity=0.406  Sum_probs=23.6

Q ss_pred             CCcccEEeeccCccccc----cccCCCCcccEEEecccccccc-----ccCCCCcccEEEecccC
Q 037108          165 LADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQLLV-----SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l~~-----~~~~l~~L~~L~i~~c~  220 (239)
                      .|++++|.+.+|.+++.    .+..+.++|+++.+..|+.++.     ....+++|++++++.|+
T Consensus       163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            44444444444444331    1122344444444444444432     11234444444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.94  E-value=0.48  Score=40.89  Aligned_cols=37  Identities=35%  Similarity=0.573  Sum_probs=19.1

Q ss_pred             CCcccEEeeccCccccc----cccCCCCcccEEEecccccc
Q 037108          165 LADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQL  201 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l  201 (239)
                      +++|+.|.+.+|..++.    .+...+|.|++|++..|..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            45666666555554331    12234555666666666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.26  E-value=0.62  Score=22.57  Aligned_cols=16  Identities=38%  Similarity=0.945  Sum_probs=11.6

Q ss_pred             CCcccEEEecccCccc
Q 037108          208 LPTLRKLTVNGCKEVV  223 (239)
Q Consensus       208 l~~L~~L~i~~c~~l~  223 (239)
                      +++|++|++++|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            3667777787777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=82.72  E-value=0.55  Score=40.17  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceE
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFV   38 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~   38 (239)
                      ..+.+|++|+++++ .++++. ++..|+.|+.|++..
T Consensus       115 ~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             hhhhcchheecccc-cccccc-chhhccchhhheecc
Confidence            46889999999999 588887 488888888887643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.65  E-value=0.53  Score=38.16  Aligned_cols=40  Identities=33%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             hccCcccccccceeEEcCCCCCCCCCcchHHHhhcC-CCCCCcceEEEecc
Q 037108           77 AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLL-KPHQSLKKLKINGY  126 (239)
Q Consensus        77 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~  126 (239)
                      +.+.+++.|+.|.++.++....          ..++ .|..+|+.+.+.|.
T Consensus        91 ~ile~lP~l~~LNls~N~L~s~----------I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNSLSSD----------IKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             HHHhcCccceEeeccCCcCCCc----------cccCcccccceEEEEEcCC
Confidence            4566777888888775543211          2223 35568888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 44/271 (16%), Positives = 77/271 (28%), Gaps = 66/271 (24%)

Query: 21  MPQGIGK-------LTSLRTMCKFV-------VGN--EIGSGLRQLKSLIHLQGTVCISR 64
           +  G GK         S +  CK         + N     + L  L+ L++       SR
Sbjct: 158 VL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 65  LENVKEISAAKEAQLNGKRNLKDLLLEWNNSTS-----NIREPET--------------- 104
            ++   I        + +  L+ LL             N++  +                
Sbjct: 217 SDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 105 DTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMG-KWIPH----GS- 158
              V D L    +   + ++ +  T     T      SL  +Y     + +P      + 
Sbjct: 274 FKQVTDFLSA-ATTTHISLDHHSMT----LTPDEV-KSLLLKYLDCRPQDLPREVLTTNP 327

Query: 159 ------GKSDEGLADLRELFL-VSCSKLQRTLLEYLPSLETLVIRKCEQLL------VSI 205
                  +S        + +  V+C KL   +   L  LE    RK    L        I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 206 LSLPTLRKLTVNGCKEVVGRAINLSSSSSVV 236
                L  +  +  K  V   +N     S+V
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.42
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.33
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.3
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.3
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.3
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.14
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.03
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.02
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.01
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.22

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=2.6e-18  Score=140.37  Aligned_cols=221  Identities=19%  Similarity=0.211  Sum_probs=151.0

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      ..++++|+++++ .++.+|..++++++|++|++......  .....++++++|+ .|++.+..- .    ..+..+.+++
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~-~L~Ls~n~l-~----~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLE-TLTLARNPL-R----ALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCS-EEEEESCCC-C----CCCGGGGGCT
T ss_pred             ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCC-EEECCCCcc-c----cCcHHHhcCc
Confidence            467899999998 58899999999999999987654322  2334567777888 888865432 1    2244577788


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+..................+..+++|+.|++.++....+|.++..+..-. .|.+.+. .+.  ..+..++
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~-~L~L~~N-~l~--~l~~~l~  226 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK-SLKIRNS-PLS--ALGPAIH  226 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCC-EEEEESS-CCC--CCCGGGG
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCC-EEEccCC-CCC--cCchhhc
Confidence            99999999865433222221111112223447789999999887777776542221100 1233222 111  1234567


Q ss_pred             cCCcccEEeeccCccccccccC---CCCcccEEEecccccc---ccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      .+++|++|++++|... +.+|.   .+++|++|++++|...   +..+..+++|++|++++|+.+...|..+.++++|++
T Consensus       227 ~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          227 HLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             GCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             cCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            8999999999998655 47775   5789999999998754   335678999999999999999999999988888876


Q ss_pred             e
Q 037108          238 W  238 (239)
Q Consensus       238 ~  238 (239)
                      +
T Consensus       306 l  306 (328)
T 4fcg_A          306 I  306 (328)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.65  E-value=1.1e-15  Score=124.85  Aligned_cols=200  Identities=24%  Similarity=0.229  Sum_probs=140.4

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHH-----H
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAA-----K   75 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~-----~   75 (239)
                      ++++++|++|++++| .+..+|..++++++|++|++......  .....++++++|+ .|++.+..........     .
T Consensus       100 l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~-~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR-ELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC-EEEEEEETTCCCCCSCSEEEC-
T ss_pred             hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC-EEECCCCCCccccChhHhhccc
Confidence            356899999999999 57899999999999999988654432  3345688888888 8998775433221110     0


Q ss_pred             HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCcee
Q 037108           76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIP  155 (239)
Q Consensus        76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~  155 (239)
                      ...+.++++|+.|+++.+...          .++..+..+++|+.|++.++....+|..+..+..- ..|.+.++.....
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L-~~L~Ls~n~~~~~  244 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL-EELDLRGCTALRN  244 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC-CEEECTTCTTCCB
T ss_pred             hhhhccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC-CEEECcCCcchhh
Confidence            112345889999999987532          23345566789999999998877777644221100 0144444333222


Q ss_pred             eCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108          156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~  218 (239)
                      .  +..++.+++|++|++++|+... .+|.   .+++|++|++++|+.   ++..+..+++|+.+.+..
T Consensus       245 ~--p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          245 Y--PPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             C--CCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             h--HHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            2  4567889999999999997664 8875   689999999999885   445778889999888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.51  E-value=8.1e-15  Score=118.84  Aligned_cols=214  Identities=15%  Similarity=0.117  Sum_probs=114.1

Q ss_pred             ccCcEEeCCCCCCCc---ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            5 IKLHHLNNPSTDSLE---EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~---~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      .+++.|+++++. +.   .+|..++++++|++|++.......+.....++++++|+ .|++.+..-    ....+..+.+
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l----~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLYITHTNV----SGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS-EEEEEEECC----EEECCGGGGG
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCC-EEECcCCee----CCcCCHHHhC
Confidence            467778887774 44   57777888888888877643322333445566677777 677654331    1122334556


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-Cccchhhhcc---------Ccc-------ee
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSIT---------GDS-------LF  144 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~---------~~~-------~~  144 (239)
                      +++|+.|+++.+....         .++..+..+++|+.|++.++... .+|..+..+.         +..       .|
T Consensus       124 l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSG---------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             CCCCCEEeCCCCccCC---------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence            6677777766443110         12233344556666666655433 2333321111         000       00


Q ss_pred             -------eeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc---ccccccCCCCccc
Q 037108          145 -------SRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE---QLLVSILSLPTLR  212 (239)
Q Consensus       145 -------L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~---~l~~~~~~l~~L~  212 (239)
                             +.+.+. .+.. ..+..++.+++|++|+++++ .+.+.+|.  .+++|++|+++++.   .++..+..+++|+
T Consensus       195 ~~l~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          195 ANLNLAFVDLSRN-MLEG-DASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGCCCSEEECCSS-EEEE-CCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             hCCcccEEECcCC-cccC-cCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence                   111110 0110 01334566778888888766 45444443  56788888887765   2344566788888


Q ss_pred             EEEecccCccccccccccCccceEe
Q 037108          213 KLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       213 ~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      +|+++++.--...|.. ..+++|+.
T Consensus       272 ~L~Ls~N~l~~~ip~~-~~l~~L~~  295 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQG-GNLQRFDV  295 (313)
T ss_dssp             EEECCSSEEEEECCCS-TTGGGSCG
T ss_pred             EEECcCCcccccCCCC-ccccccCh
Confidence            8888877543333333 44444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.50  E-value=6.5e-14  Score=113.51  Aligned_cols=194  Identities=11%  Similarity=-0.003  Sum_probs=106.9

Q ss_pred             ccCCccCceEeccCCC-CChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHH
Q 037108           29 TSLRTMCKFVVGNEIG-SGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTC  107 (239)
Q Consensus        29 ~~L~~L~~~~~~~~~~-~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  107 (239)
                      .++++|++....-... .....++++++|+ .|++.+...   .....+..+.++++|+.|+++.+...         ..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~-~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLN-FLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVS---------GA  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCS-EEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCE---------EE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCC-eeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeC---------Cc
Confidence            4677777654432210 3446788888888 898874222   22233455778899999999977532         12


Q ss_pred             HhhcCCCCCCcceEEEeccCCC-CccchhhhccCcceeeeec-------------cCC-CceeeC---------CCCCCC
Q 037108          108 VLDLLKPHQSLKKLKINGYGGT-KFAIYTLSITGDSLFSRYA-------------RMG-KWIPHG---------SGKSDE  163 (239)
Q Consensus       108 ~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~~~~~~L~l~-------------~~~-~l~~~~---------~~~~~~  163 (239)
                      ++..+..+++|+.|+++++... ..|..+..+..-. .+.+.             .++ +++.+.         .+..++
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC-eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            3445566789999999987654 3555442221100 01111             111 221111         012223


Q ss_pred             cCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108          164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      .++ |++|+++++ .+++..|.   .+++|+.|+++++.-  ....+..+++|++|++++|.--...|..+..+++|+.+
T Consensus       196 ~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          196 NLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             GCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             CCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence            333 555555544 33333332   456777777766542  11235567888888888876544566666666655544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.49  E-value=5.2e-14  Score=127.10  Aligned_cols=79  Identities=13%  Similarity=0.013  Sum_probs=54.4

Q ss_pred             CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc---ccccccCCCCcccEEEecccCccccccccccCc
Q 037108          159 GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE---QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSS  232 (239)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l  232 (239)
                      +..++.+++|++|+++++ ++.|.+|.   .+++|+.|+++++.   .++..++.+++|+.|+++++.--..+|..++++
T Consensus       625 ~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             chhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            345566788888888866 66677775   56778888887765   344566777888888888776555666666666


Q ss_pred             cceEee
Q 037108          233 SSVVLW  238 (239)
Q Consensus       233 ~~L~~~  238 (239)
                      ++|+.+
T Consensus       704 ~~L~~L  709 (768)
T 3rgz_A          704 TMLTEI  709 (768)
T ss_dssp             CCCSEE
T ss_pred             CCCCEE
Confidence            665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=4.5e-13  Score=114.50  Aligned_cols=84  Identities=20%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             CCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            2 GNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      +++++|++|++++| .+..+ |..++++++|++|++....-. ......++++++|+ .|++....    .....+..+.
T Consensus        53 ~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~n~----i~~~~~~~~~  125 (477)
T 2id5_A           53 ASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT-KLDISENK----IVILLDYMFQ  125 (477)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC-EEECTTSC----CCEECTTTTT
T ss_pred             cCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC-EEECCCCc----cccCChhHcc
Confidence            56778888888887 46665 667788888888876432211 11111234455555 55543221    1111223344


Q ss_pred             cccccccceeEE
Q 037108           81 GKRNLKDLLLEW   92 (239)
Q Consensus        81 ~l~~L~~L~l~~   92 (239)
                      ++++|+.|.++.
T Consensus       126 ~l~~L~~L~l~~  137 (477)
T 2id5_A          126 DLYNLKSLEVGD  137 (477)
T ss_dssp             TCTTCCEEEECC
T ss_pred             ccccCCEEECCC
Confidence            455555555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.47  E-value=7.4e-14  Score=126.11  Aligned_cols=217  Identities=14%  Similarity=0.047  Sum_probs=129.3

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      +.+|++|++++|...+.+|..++++++|++|++..... .+.....++++++|+ .+.+....    .....+..+..++
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~  466 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLR-DLKLWLNM----LEGEIPQELMYVK  466 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCT
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-cCcccHHHhcCCCCC-EEECCCCc----ccCcCCHHHcCCC
Confidence            55677777777743336777788888888877654322 123334566666666 66664432    1222334456677


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-CccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      +|+.|+++.+...+         .++..+..+++|+.|++.++... .+|.|+..+..-. .+.+.++. +... .|..+
T Consensus       467 ~L~~L~L~~N~l~~---------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~-l~~~-~p~~l  534 (768)
T 3rgz_A          467 TLETLILDFNDLTG---------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNS-FSGN-IPAEL  534 (768)
T ss_dssp             TCCEEECCSSCCCS---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSC-CEEE-CCGGG
T ss_pred             CceEEEecCCcccC---------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCc-ccCc-CCHHH
Confidence            78888877554321         12344555678888888887655 4566653221100 12232221 1111 14456


Q ss_pred             CcCCcccEEeeccCccccccccC---------------------------------------------------------
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE---------------------------------------------------------  185 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~---------------------------------------------------------  185 (239)
                      +.+++|++|++++| .+.|.+|.                                                         
T Consensus       535 ~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (768)
T 3rgz_A          535 GDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC  613 (768)
T ss_dssp             GGCTTCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred             cCCCCCCEEECCCC-ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence            67888888888766 33334432                                                         


Q ss_pred             ----------------CCCcccEEEecccc---ccccccCCCCcccEEEecccCccccccccccCccceEeeC
Q 037108          186 ----------------YLPSLETLVIRKCE---QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD  239 (239)
Q Consensus       186 ----------------~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~  239 (239)
                                      .+++|+.|+++++.   .++..++.+++|+.|+++++.--..+|..+..+++|+..|
T Consensus       614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                            24567788887765   3445677889999999998876667777777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=3.4e-13  Score=115.26  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=41.0

Q ss_pred             CcccEEeeccCcccccccc----CCCCcccEEEeccccc--cc-cccCCCCcccEEEecccCccccccccccCccceEee
Q 037108          166 ADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      .+|++|+++++ +++ .+|    ..+++|++|+++++.-  +. ..+..+++|++|++.++.--...+..+..+++|+.+
T Consensus       224 ~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          224 LNLTSLSITHC-NLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             CCCSEEEEESS-CCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             ccccEEECcCC-ccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence            35555555554 343 343    2467777777776541  11 235667788888888775444445555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=1.7e-13  Score=120.44  Aligned_cols=220  Identities=18%  Similarity=0.183  Sum_probs=115.5

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +++++|++|++++| .++++|.+++++++|++|++...... ......+.++++|+ .+.+.+....   .......+..
T Consensus       275 ~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~~~---~~~~~~~~~~  348 (606)
T 3t6q_A          275 HCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLT-HLSIKGNTKR---LELGTGCLEN  348 (606)
T ss_dssp             TTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCS-EEECCSCSSC---CBCCSSTTTT
T ss_pred             ccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCC-EEECCCCCcc---cccchhhhhc
Confidence            56788999999988 58889988999999998876433211 11123455566666 6666443211   0111123556


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhc--------cCcce--e---eee
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSI--------TGDSL--F---SRY  147 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l--------~~~~~--~---L~l  147 (239)
                      +++|+.|+++.+....       .......+..+++|+.|++.++..... |..+..+        .+..-  .   -.+
T Consensus       349 l~~L~~L~l~~n~l~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          349 LENLRELDLSHDDIET-------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             CTTCCEEECCSSCCCE-------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             cCcCCEEECCCCcccc-------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence            6777777776443211       000122344455666666665543222 1111100        00000  0   001


Q ss_pred             ccCCCceeeC---------CCCCCCcCCcccEEeeccCccccc-ccc-----CCCCcccEEEeccccc--c-ccccCCCC
Q 037108          148 ARMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQR-TLL-----EYLPSLETLVIRKCEQ--L-LVSILSLP  209 (239)
Q Consensus       148 ~~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~-~~p-----~~l~~L~~L~l~~c~~--l-~~~~~~l~  209 (239)
                      ..+++++.+.         .+..++.+++|++|+++++. +.+ .++     ..+++|++|++++|.-  + +..+..++
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  500 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK  500 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence            2222332221         12335567777777777663 332 121     1467777777777652  1 23456777


Q ss_pred             cccEEEecccCccccccccccCccce
Q 037108          210 TLRKLTVNGCKEVVGRAINLSSSSSV  235 (239)
Q Consensus       210 ~L~~L~i~~c~~l~~~~~~~~~l~~L  235 (239)
                      +|++|++++|.--...+..+.++++|
T Consensus       501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          501 MMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCEEECCCCccCcCChhHhCccccc
Confidence            88888888776555556666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.43  E-value=5.6e-13  Score=106.39  Aligned_cols=198  Identities=14%  Similarity=0.075  Sum_probs=116.9

Q ss_pred             cccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            4 LIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ..+|++|+++++ .++.+| ..++++++|++|++....- .......++++++|+ .+++.+.....   ...+..+..+
T Consensus        31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~~l~---~~~~~~~~~l  104 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLE-QLDLSDNAQLR---SVDPATFHGL  104 (285)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSCTTCC---CCCTTTTTTC
T ss_pred             CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCcc-ceeCHhhcCCccCCC-EEeCCCCCCcc---ccCHHHhcCC
Confidence            467999999999 478887 4589999999998754321 111233466677777 77765443222   1223456677


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      ++|+.|+++.+.....         ....+..+++|+.|++.++....++.. +..+..- ..+.+.+. .+..+. +..
T Consensus       105 ~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n-~l~~~~-~~~  172 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQEL---------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGN-RISSVP-ERA  172 (285)
T ss_dssp             TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCCEEC-TTT
T ss_pred             cCCCEEECCCCcCCEE---------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCC-cccccC-HHH
Confidence            8899988875542211         123455677899999988766555432 2110000 01222221 111111 223


Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cc-cccCCCCcccEEEecccC
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~  220 (239)
                      ++.+++|++|+++++ .+.+..|.   .+++|+.|+++++.-  +. ..+..+++|++|++++++
T Consensus       173 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            566888888888876 45534343   467888888887642  22 246678888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.42  E-value=1.3e-12  Score=110.82  Aligned_cols=36  Identities=17%  Similarity=0.041  Sum_probs=19.8

Q ss_pred             CCcccCcEEeCCCCCCCcccC-ccCCCCccCCccCce
Q 037108            2 GNLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKF   37 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~   37 (239)
                      +++++|++|++++|.....+| ..++++++|++|++.
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            456666666666663222443 345666666666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.42  E-value=4.5e-13  Score=113.70  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .+|++|++++|. ++.+ |..++++++|++|++.............++++++|+ .|++.+..    .....+..+.+++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-ILKLDYNQ----FLQLETGAFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC-EEECTTCT----TCEECTTTTTTCT
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCC-EEeCCCCc----cCccChhhccCcc
Confidence            579999999994 7776 778999999999988654321111223456666666 66664322    2222334556667


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhc--CCCCCCcceEEEeccCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDL--LKPHQSLKKLKINGYGGT  129 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~  129 (239)
                      +|+.|+++.+...         ...+..  +..+++|+.|++.++...
T Consensus       104 ~L~~L~L~~n~l~---------~~~~~~~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A          104 NLEVLTLTQCNLD---------GAVLSGNFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             TCCEEECTTSCCB---------THHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred             cCCEEeCCCCCCC---------ccccCcccccCcccCCEEECCCCccC
Confidence            7777777644311         111222  444556666666655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.41  E-value=5.2e-13  Score=111.24  Aligned_cols=87  Identities=11%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++++|++|++++|. ++.+|+ .++++++|++|++....-. ......++++++|+ .+++.+..    .....+..+
T Consensus        89 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~  161 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT-TLSMSNNN----LERIEDDTF  161 (390)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTT
T ss_pred             ccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCc-EEECCCCc----cCccChhhc
Confidence            3578899999999994 777754 4799999999987543321 11111245666677 67765432    122223446


Q ss_pred             CcccccccceeEEcC
Q 037108           80 NGKRNLKDLLLEWNN   94 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~   94 (239)
                      ..+++|+.|+++.+.
T Consensus       162 ~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          162 QATTSLQNLQLSSNR  176 (390)
T ss_dssp             SSCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            677788888887554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=1.2e-12  Score=107.26  Aligned_cols=73  Identities=21%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             CCcCCcccEEeeccCccccccccC--CCCcccEEEecccccc---ccccCCCCcccEEEecccCccccccccccCccceE
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      +..+++|++|++++| ++. .++.  .+++|++|++++|.--   ...+..+++|++|++++|+--...+  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n-~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSN-QIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCC-ccC-CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            445667777777665 443 3332  5677777777776521   1245677888888888876333323  44444444


Q ss_pred             ee
Q 037108          237 LW  238 (239)
Q Consensus       237 ~~  238 (239)
                      .+
T Consensus       337 ~L  338 (347)
T 4fmz_A          337 SA  338 (347)
T ss_dssp             EE
T ss_pred             ee
Confidence            33

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.41  E-value=1.1e-12  Score=104.77  Aligned_cols=209  Identities=14%  Similarity=0.108  Sum_probs=126.0

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      +.++.++. .++.+|.++  .++|++|++....- .......++++++|+ .+.+.+..    .....+..+..+++|+.
T Consensus        14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~   84 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLT-ILWLHSNV----LARIDAAAFTGLALLEQ   84 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCTTCCE
T ss_pred             eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcC-CccCHHHcccCCCCC-EEECCCCc----cceeCHhhcCCccCCCE
Confidence            57888887 589999755  56888887643221 111223466677777 77775432    22233456778899999


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      |+++.+.....        -....+..+++|+.|++.++.....+ ..+..+..- ..+.+.+. .+... .+..++.++
T Consensus        85 L~l~~n~~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n-~l~~~-~~~~~~~l~  153 (285)
T 1ozn_A           85 LDLSDNAQLRS--------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDN-ALQAL-PDDTFRDLG  153 (285)
T ss_dssp             EECCSCTTCCC--------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             EeCCCCCCccc--------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCC-ccccc-CHhHhccCC
Confidence            99986641111        01334556789999999988765543 322111000 01222211 11111 023367789


Q ss_pred             cccEEeeccCccccccccC----CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108          167 DLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       167 ~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      +|++|+++++ +++ .+|.    .+++|++|+++++.-  + +..+..+++|++|+++++.--...+..+..+++|+.+
T Consensus       154 ~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          154 NLTHLFLHGN-RIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             TCCEEECCSS-CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             CccEEECCCC-ccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence            9999999987 665 4443    578999999998762  2 3467788999999999985444333445555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=1.7e-13  Score=121.32  Aligned_cols=62  Identities=8%  Similarity=0.024  Sum_probs=41.2

Q ss_pred             CCCCCcCCc-ccEEeeccCccccccccCC-----CCcccEEEeccccc---cccccC-------CCCcccEEEecccCcc
Q 037108          159 GKSDEGLAD-LRELFLVSCSKLQRTLLEY-----LPSLETLVIRKCEQ---LLVSIL-------SLPTLRKLTVNGCKEV  222 (239)
Q Consensus       159 ~~~~~~~~~-L~~L~l~~~~~L~~~~p~~-----l~~L~~L~l~~c~~---l~~~~~-------~l~~L~~L~i~~c~~l  222 (239)
                      |..++.+++ |++|+++++ .++ .+|..     +++|++|+++++.-   .+..++       .+++|++|++++|.--
T Consensus       369 p~~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~  446 (636)
T 4eco_A          369 PANFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS  446 (636)
T ss_dssp             CTTSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred             cHhhhhhcccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence            455667777 888888876 465 66652     34788888877653   223344       5668888888886533

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=7.5e-13  Score=107.83  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             CCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CC
Q 037108          112 LKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YL  187 (239)
Q Consensus       112 l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l  187 (239)
                      +..+++|+.|++.++....+|..+. .++    .+.+.+. .+.... +..++.+++|++|+++++ .+.+..+.   .+
T Consensus       167 ~~~l~~L~~L~l~~n~l~~l~~~~~~~L~----~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l  239 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITTIPQGLPPSLT----ELHLDGN-KITKVD-AASLKGLNNLAKLGLSFN-SISAVDNGSLANT  239 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSCCTTCS----EEECTTS-CCCEEC-TGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             ccCCCCcCEEECCCCccccCCccccccCC----EEECCCC-cCCccC-HHHhcCCCCCCEEECCCC-cCceeChhhccCC
Confidence            3345567777776665554543320 000    1222221 111111 234566788888888876 45422221   56


Q ss_pred             CcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          188 PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       188 ~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      ++|++|+++++.  .++..+..+++|++|++++|+
T Consensus       240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence            888888888775  344466778888999888875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=3e-13  Score=119.67  Aligned_cols=204  Identities=10%  Similarity=0.066  Sum_probs=127.7

Q ss_pred             CCCcccCcEEeCCCCCCCcc------------------cCccCC--CCccCCccCceEeccCCCCChhhhcccccccceE
Q 037108            1 MGNLIKLHHLNNPSTDSLEE------------------MPQGIG--KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV   60 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L   60 (239)
                      ++++++|++|++++|. ++.                  +|++++  ++++|++|++..+.. .+..+..++++++|+ .|
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~-~L  278 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQ-LI  278 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCC-EE
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCC-EE
Confidence            4678999999999995 677                  999999  999999998865542 233446677888888 77


Q ss_pred             EEEeccCCCChhH-HHHhccCc------ccccccceeEEcCCCCCCCCCcchHHHhh--cCCCCCCcceEEEeccCCC-C
Q 037108           61 CISRLENVKEISA-AKEAQLNG------KRNLKDLLLEWNNSTSNIREPETDTCVLD--LLKPHQSLKKLKINGYGGT-K  130 (239)
Q Consensus        61 ~~~~~~~~~~~~~-~~~~~l~~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~  130 (239)
                      ++.....   ... ..+..+..      +++|+.|+++.+...          .++.  .+..+++|+.|++.++... .
T Consensus       279 ~Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----------~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          279 NVACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----------TFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             ECTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----------SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             ECcCCCC---CccccchHHHHhhhccccCCCCCEEECCCCcCC----------ccCchhhhccCCCCCEEeCcCCcCccc
Confidence            7654331   222 33444444      388999998865422          2333  4556678888888877655 4


Q ss_pred             ccchhh--------hccCcce--e-eeeccCCC-ceeeC--------CCCCCCc--CCcccEEeeccCccccccccCCCC
Q 037108          131 FAIYTL--------SITGDSL--F-SRYARMGK-WIPHG--------SGKSDEG--LADLRELFLVSCSKLQRTLLEYLP  188 (239)
Q Consensus       131 ~p~~~l--------~l~~~~~--~-L~l~~~~~-l~~~~--------~~~~~~~--~~~L~~L~l~~~~~L~~~~p~~l~  188 (239)
                      +| .+.        .+.+..-  + -.+..+++ ++.+.        .|..++.  +++|++|+++++ .+.+.+|..++
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~  423 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFD  423 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSC
T ss_pred             hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cCCCcchhhhc
Confidence            55 221        1111100  0 01122223 33221        1333333  448999999987 56666665444


Q ss_pred             ----------cccEEEeccccc--ccc-ccCCCCcccEEEecccCcc
Q 037108          189 ----------SLETLVIRKCEQ--LLV-SILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       189 ----------~L~~L~l~~c~~--l~~-~~~~l~~L~~L~i~~c~~l  222 (239)
                                +|++|+++++.-  ++. .+..+++|++|++++|.--
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence                      899999988752  322 2345899999999997644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.39  E-value=7.7e-13  Score=114.82  Aligned_cols=64  Identities=23%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             CCcccEEeeccCcccccccc------CCCCcccEEEeccccc--cc---cccCCCCcccEEEecccCcccccccccc
Q 037108          165 LADLRELFLVSCSKLQRTLL------EYLPSLETLVIRKCEQ--LL---VSILSLPTLRKLTVNGCKEVVGRAINLS  230 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p------~~l~~L~~L~l~~c~~--l~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~  230 (239)
                      +++|++|+++++ ++.+.+|      ..+++|++|+++++.-  +.   ..+..+++|++|++++| ++...|..+.
T Consensus       333 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~  407 (549)
T 2z81_A          333 LKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQ  407 (549)
T ss_dssp             CTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCC
T ss_pred             CccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhc
Confidence            556666666655 3332322      1456666666665542  11   12455666666666665 3333443333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=2e-12  Score=109.51  Aligned_cols=82  Identities=15%  Similarity=0.104  Sum_probs=44.8

Q ss_pred             ccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|++++| .+..+| ..++++++|++|++....- .......+.++++|+ .|++.+..    ........+..++
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~  136 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLN-TLELFDNR----LTTIPNGAFVYLS  136 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCC-EEECCSSC----CSSCCTTTSCSCS
T ss_pred             CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCC-EEECCCCc----CCeeCHhHhhccc
Confidence            45777777777 366665 5677777777776643221 111223455566666 66654321    1112223455666


Q ss_pred             ccccceeEEc
Q 037108           84 NLKDLLLEWN   93 (239)
Q Consensus        84 ~L~~L~l~~~   93 (239)
                      +|+.|+++.+
T Consensus       137 ~L~~L~L~~N  146 (440)
T 3zyj_A          137 KLKELWLRNN  146 (440)
T ss_dssp             SCCEEECCSC
T ss_pred             cCceeeCCCC
Confidence            7777776644

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=1.9e-12  Score=110.05  Aligned_cols=194  Identities=13%  Similarity=0.050  Sum_probs=101.7

Q ss_pred             ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|++++|. ++.+ |..++++++|++|++....- .......+.++++|+ .|++.+..    ........+..++
T Consensus        75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~  147 (452)
T 3zyi_A           75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLN-TLELFDNW----LTVIPSGAFEYLS  147 (452)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CSBCCTTTSSSCT
T ss_pred             CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCcc-CCcChhhccCcccCC-EEECCCCc----CCccChhhhcccC
Confidence            468889998884 6666 56688888888887754321 111223455666666 66664432    1222233466677


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-ccc-hhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FAI-YTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~-~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.+++... ++. .+..+..- ..|.+.+. ++.   ..+.
T Consensus       148 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n-~l~---~~~~  213 (452)
T 3zyi_A          148 KLRELWLRNNPIESI---------PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMC-NIK---DMPN  213 (452)
T ss_dssp             TCCEEECCSCCCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTS-CCS---SCCC
T ss_pred             CCCEEECCCCCccee---------CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCC-ccc---cccc
Confidence            888888875532110         01234456677777777643322 221 11000000 01222111 011   1123


Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccC
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~  220 (239)
                      +..+++|++|+++++ .+++..|.   .+++|++|++.++.-  + ...+..+++|++|+++++.
T Consensus       214 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          214 LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            455677777777765 44423232   466777777766542  1 1245566777777777663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=1e-12  Score=115.51  Aligned_cols=227  Identities=11%  Similarity=0.066  Sum_probs=110.5

Q ss_pred             CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++.+|++|++++|. ++.+|+. ++++++|++|++..+.-. ......++++++|+ .|.+.+..    .....+..+
T Consensus        95 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~  167 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT-TLSMSNNN----LERIEDDTF  167 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTT
T ss_pred             hcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCC-EEEeeCCc----CCCCChhhh
Confidence            4678899999999984 7777654 689999999987544321 11112246667777 67765432    222233456


Q ss_pred             CcccccccceeEEcCCCCCCCCCcc-------hHHHhhcCCCCCCcceEEEeccCCCCccchh------hhccCcce--e
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPET-------DTCVLDLLKPHQSLKKLKINGYGGTKFAIYT------LSITGDSL--F  144 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~------l~l~~~~~--~  144 (239)
                      ..+++|+.|+++.+...........       ....+..+..+.+|+.|++.++....+|..+      +.+.+..-  .
T Consensus       168 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT  247 (597)
T ss_dssp             TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred             hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence            6777888888775542211000000       0000011122234445554444332222111      00000000  0


Q ss_pred             eeeccCCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCc
Q 037108          145 SRYARMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPT  210 (239)
Q Consensus       145 L~l~~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~  210 (239)
                      -.+..+++|..+.         .+..++.+++|++|+++++ .+. .+|.   .+|+|+.|++++|.  .++..+..+++
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~  325 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR  325 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCC-CCCcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence            0011122222211         0234455666777777654 454 3442   36677777776654  23334456677


Q ss_pred             ccEEEecccCccccccccccCccceE
Q 037108          211 LRKLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       211 L~~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      |+.|++++|.-.......+.+++.|.
T Consensus       326 L~~L~L~~N~l~~~~~~~~~~L~~L~  351 (597)
T 3oja_B          326 LENLYLDHNSIVTLKLSTHHTLKNLT  351 (597)
T ss_dssp             CSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred             CCEEECCCCCCCCcChhhcCCCCEEE
Confidence            77777777654333333444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=3.5e-12  Score=104.47  Aligned_cols=206  Identities=15%  Similarity=0.129  Sum_probs=115.9

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ++++++|++|++++| .+..+|. ++++++|++|++..+..  ...+..+.++++|+ .+.+.+..-.. ..     .+.
T Consensus       106 ~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~--~~~~~~~~~l~~L~-~L~l~~~~~~~-~~-----~~~  174 (347)
T 4fmz_A          106 LQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHN--LSDLSPLSNMTGLN-YLTVTESKVKD-VT-----PIA  174 (347)
T ss_dssp             GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTT--CCCCGGGTTCTTCC-EEECCSSCCCC-CG-----GGG
T ss_pred             HcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCC--cccccchhhCCCCc-EEEecCCCcCC-ch-----hhc
Confidence            357889999999999 5888887 88999999998754432  22344567777777 77765433211 11     155


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      .+++|+.|+++.+....           ...+..+++|+.+.+.++.....+. +.....- ..+.+.++ .+..   .+
T Consensus       175 ~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L-~~L~l~~n-~l~~---~~  237 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIED-----------ISPLASLTSLHYFTAYVNQITDITP-VANMTRL-NSLKIGNN-KITD---LS  237 (347)
T ss_dssp             GCTTCSEEECTTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTC-CEEECCSS-CCCC---CG
T ss_pred             cCCCCCEEEccCCcccc-----------cccccCCCccceeecccCCCCCCch-hhcCCcC-CEEEccCC-ccCC---Cc
Confidence            66778888877553211           0113345677777777665443332 1000000 01222211 0011   11


Q ss_pred             CCCcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEecccCccccccccccCccceE
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      ....+++|++|++++| .+. .++  ..+++|++|++++|.  .+ ..+..+++|++|++++|.--...+..+..+++|+
T Consensus       238 ~~~~l~~L~~L~l~~n-~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          238 PLANLSQLTWLEIGTN-QIS-DINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GGTTCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             chhcCCCCCEEECCCC-ccC-CChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            2456777788877766 444 333  256777777777764  22 2456677778888877755444444444444444


Q ss_pred             e
Q 037108          237 L  237 (239)
Q Consensus       237 ~  237 (239)
                      .
T Consensus       315 ~  315 (347)
T 4fmz_A          315 T  315 (347)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.37  E-value=2.9e-12  Score=112.53  Aligned_cols=230  Identities=15%  Similarity=0.044  Sum_probs=120.4

Q ss_pred             CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++++|++|++++|. ++.+ |..++++++|++|++.............++++++|+ .+++.+..- . .....+..+
T Consensus       297 l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l-~-~~~~~~~~~  372 (606)
T 3t6q_A          297 LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-ELDLSHDDI-E-TSDCCNLQL  372 (606)
T ss_dssp             CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC-EEECCSSCC-C-EEEESTTTT
T ss_pred             hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC-EEECCCCcc-c-cccCcchhc
Confidence            4578899999999994 6666 567889999999877554322112222355666666 666543221 0 000012345


Q ss_pred             CcccccccceeEEcCCCCCCCCC----------------cchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhccCcc
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREP----------------ETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSITGDS  142 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~  142 (239)
                      ..+++|+.|+++.+.........                .........+..+++|+.|++.++..... |.++..+..- 
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-  451 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-  451 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-
Confidence            56667777776644311000000                00000001123334555555555433222 2221100000 


Q ss_pred             eeeeeccCCCce-eeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEEE
Q 037108          143 LFSRYARMGKWI-PHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKLT  215 (239)
Q Consensus       143 ~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~  215 (239)
                      ..+.+.+..--. .+..+..++.+++|++|++++| ++++..|.   .+++|++|+++++.-   .+..+..+++| +|+
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence            012222211000 0111234667899999999988 56544443   578999999998763   23467788999 999


Q ss_pred             ecccCccccccccccCccceEe
Q 037108          216 VNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       216 i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      +++|.--...+..+..+++|+.
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSE
T ss_pred             CcCCcccccCHhhcccCCCCCE
Confidence            9998655555554444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.37  E-value=8.8e-13  Score=106.73  Aligned_cols=199  Identities=16%  Similarity=0.060  Sum_probs=111.6

Q ss_pred             CcccCcEEeCCCCCCCcccCccC--CCCccCCccCceEeccCCCCChhhhccc-----ccccceEEEEeccCCCChhHHH
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGI--GKLTSLRTMCKFVVGNEIGSGLRQLKSL-----IHLQGTVCISRLENVKEISAAK   75 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i--~~L~~L~~L~~~~~~~~~~~~i~~L~~L-----~~L~~~L~~~~~~~~~~~~~~~   75 (239)
                      ++.+|++|++++|...+.+|..+  +++++|++|++....-...  ...++.+     ++|+ .|++.+..    .....
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~-~L~L~~N~----l~~~~  165 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLK-VLSIAQAH----SLNFS  165 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCC-EEEEESCS----CCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCc-EEEeeCCC----Cccch
Confidence            57899999999995334789887  9999999998865443221  2344444     6777 78876543    22233


Q ss_pred             HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcC--CCCCCcceEEEeccCCCCccchhhhcc-Ccce--eeeeccC
Q 037108           76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLL--KPHQSLKKLKINGYGGTKFAIYTLSIT-GDSL--FSRYARM  150 (239)
Q Consensus        76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~~~l~l~-~~~~--~L~l~~~  150 (239)
                      +..+.++++|+.|+++.+..       ......+..+  ..+++|+.|++.++....++.....+. +...  .|.+.+.
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             HHHhccCCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            35677888999999985531       1122334444  667899999999887654332110000 0000  0111111


Q ss_pred             CCceeeCCCCCCCcCCcccEEeeccCccccccccCCC-CcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108          151 GKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       151 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c  219 (239)
                       .+...........+++|++|+++++ +++ .+|..+ ++|++|+++++.  .++ .+..+++|++|+++++
T Consensus       239 -~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~~~L~~L~Ls~N~l~~~p-~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          239 -SLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGN  306 (312)
T ss_dssp             -CCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCCSEEEEEECCSSCCCSCC-CTTTSCEEEEEECTTC
T ss_pred             -cCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhccCCceEEECCCCCCCCCh-hHhhCCCCCEEeccCC
Confidence             0111000012234566777777655 454 555433 466777666543  222 2455666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=107.72  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=66.8

Q ss_pred             CCCcccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH-hc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE-AQ   78 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~-~~   78 (239)
                      ++++++|++|++++| .++.++ ..++++++|++|++....-. ......++++++|+ .+++.+..    ...... ..
T Consensus        72 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~  144 (353)
T 2z80_A           72 LQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT-FLNLLGNP----YKTLGETSL  144 (353)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCS-EEECTTCC----CSSSCSSCS
T ss_pred             hccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCC-EEECCCCC----CcccCchhh
Confidence            357888999999988 477765 56888999998877543221 11222366677777 66664322    111111 24


Q ss_pred             cCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC
Q 037108           79 LNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT  129 (239)
Q Consensus        79 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  129 (239)
                      +..+++|+.|+++.+.....        .....+..+++|+.|++.++...
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTK--------IQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCC
T ss_pred             hccCCCCcEEECCCCccccc--------cCHHHccCCCCCCEEECCCCCcC
Confidence            56677888888876531110        01223445567777777766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=8.9e-13  Score=106.23  Aligned_cols=197  Identities=17%  Similarity=0.115  Sum_probs=107.7

Q ss_pred             CCcccCcEEeCCCCCCCccc---CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHH-Hh
Q 037108            2 GNLIKLHHLNNPSTDSLEEM---PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAK-EA   77 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~l---P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~-~~   77 (239)
                      +++++|++|++++| .++.+   |..+.++++|++|++......  .....+..+++|+ .+.+.+..    ..... ..
T Consensus        49 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~-~L~l~~n~----l~~~~~~~  120 (306)
T 2z66_A           49 DKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLE-HLDFQHSN----LKQMSEFS  120 (306)
T ss_dssp             TTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEEETCTTCC-EEECTTSE----EESSTTTT
T ss_pred             hccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc--cChhhcCCCCCCC-EEECCCCc----ccccccch
Confidence            57788999999888 46655   667778888888877433211  1112355566666 66553321    11111 13


Q ss_pred             ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCcee
Q 037108           78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIP  155 (239)
Q Consensus        78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~  155 (239)
                      .+..+++|+.|+++.+...         ......+..+++|+.|++.++....  .|.++..+..-. .+.+.+. .+..
T Consensus       121 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n-~l~~  189 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQC-QLEQ  189 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCE---------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTS-CCCE
T ss_pred             hhhhccCCCEEECCCCcCC---------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCC-CcCC
Confidence            4566778888887744321         1112334556788888887764332  333221110000 1222211 1111


Q ss_pred             eCCCCCCCcCCcccEEeeccCcccccccc----CCCCcccEEEecccccc---ccccCCCC-cccEEEecccC
Q 037108          156 HGSGKSDEGLADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQL---LVSILSLP-TLRKLTVNGCK  220 (239)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~l---~~~~~~l~-~L~~L~i~~c~  220 (239)
                      .. +..++.+++|++|+++++ .++ .++    ..+++|+.|+++++.--   +..+..++ +|++|++++++
T Consensus       190 ~~-~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          190 LS-PTAFNSLSSLQVLNMSHN-NFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EC-TTTTTTCTTCCEEECTTS-CCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cC-HHHhcCCCCCCEEECCCC-ccC-ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            11 344566788888888876 454 332    24678888888877532   12455664 78888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.1e-13  Score=112.80  Aligned_cols=202  Identities=16%  Similarity=0.117  Sum_probs=105.2

Q ss_pred             ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      .++++|+++++ .+...+..+.++++|++|++..+..........++++++|+ .|++.+..    ..+..+..+..+++
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~-~L~L~~~~----l~~~~~~~l~~~~~  143 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ-NLSLEGLR----LSDPIVNTLAKNSN  143 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS-EEECTTCB----CCHHHHHHHTTCTT
T ss_pred             ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC-EEeCcCcc----cCHHHHHHHhcCCC
Confidence            56777777777 36666666777777777766433211001122355666666 66654332    22333444556677


Q ss_pred             cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc-CCCC--ccchhhhccCcceeeeeccCC-CceeeCCCC
Q 037108           85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY-GGTK--FAIYTLSITGDSLFSRYARMG-KWIPHGSGK  160 (239)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~--~p~~~l~l~~~~~~L~l~~~~-~l~~~~~~~  160 (239)
                      |+.|+++.+..       .....+...+...++|+.|++.++ ....  ++..+..+...-..|.+.++. .+..-..+.
T Consensus       144 L~~L~L~~~~~-------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          144 LVRLNLSGCSG-------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             CSEEECTTCBS-------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             CCEEECCCCCC-------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            77777764421       111223333344567777777766 3221  222221110000012222221 110000011


Q ss_pred             CCCcCCcccEEeeccCcccccccc---CCCCcccEEEecccccccc----ccCCCCcccEEEeccc
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGC  219 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c  219 (239)
                      ..+.+++|++|++++|..+++..+   ..+++|++|++++|..+..    .+..+++|++|++.+|
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            223578888888888764543322   1568888888888865432    3567888888888888

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=5.9e-12  Score=97.89  Aligned_cols=188  Identities=15%  Similarity=0.076  Sum_probs=108.1

Q ss_pred             cCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            6 KLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      +|++|+++++ .++.+|. .++++++|++|++.............+.++++|+ .+++.+...+.   ......+.++++
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~-~L~l~~~n~l~---~i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT-HIEIRNTRNLT---YIDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC-EEEEEEETTCC---EECTTSEECCTT
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc-EEECCCCCCee---EcCHHHhCCCCC
Confidence            6889999888 4788876 6888889998877543211111222456666777 77776522222   122234566778


Q ss_pred             cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcc---eEEEecc-CCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLK---KLKINGY-GGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      |+.|+++.+....          ++ .+...++|+   .|++.++ ....+|.                          .
T Consensus       107 L~~L~l~~n~l~~----------lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~  149 (239)
T 2xwt_C          107 LKFLGIFNTGLKM----------FP-DLTKVYSTDIFFILEITDNPYMTSIPV--------------------------N  149 (239)
T ss_dssp             CCEEEEEEECCCS----------CC-CCTTCCBCCSEEEEEEESCTTCCEECT--------------------------T
T ss_pred             CCEEeCCCCCCcc----------cc-ccccccccccccEEECCCCcchhhcCc--------------------------c
Confidence            8888888765321          11 133344555   8888776 4333332                          2


Q ss_pred             CCCcCCccc-EEeeccCccccccccC---CCCcccEEEecccccccc----ccCCC-CcccEEEecccCccccccccccC
Q 037108          161 SDEGLADLR-ELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLV----SILSL-PTLRKLTVNGCKEVVGRAINLSS  231 (239)
Q Consensus       161 ~~~~~~~L~-~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~----~~~~l-~~L~~L~i~~c~~l~~~~~~~~~  231 (239)
                      .++.+++|+ +|+++++ +++ .+|.   ..++|++|++.+++.++.    .+..+ ++|++|++++++--...+..+.+
T Consensus       150 ~~~~l~~L~~~L~l~~n-~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~  227 (239)
T 2xwt_C          150 AFQGLCNETLTLKLYNN-GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH  227 (239)
T ss_dssp             TTTTTBSSEEEEECCSC-CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT
T ss_pred             cccchhcceeEEEcCCC-CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc
Confidence            234566777 7777655 454 5543   225677777776653322    34556 77777777764322222334556


Q ss_pred             ccceEe
Q 037108          232 SSSVVL  237 (239)
Q Consensus       232 l~~L~~  237 (239)
                      ++.|++
T Consensus       228 L~~L~l  233 (239)
T 2xwt_C          228 LKELIA  233 (239)
T ss_dssp             CSEEEC
T ss_pred             Cceeec
Confidence            666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=4.8e-12  Score=107.13  Aligned_cols=76  Identities=14%  Similarity=0.013  Sum_probs=43.7

Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccce
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSV  235 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L  235 (239)
                      +..+++|++|+++++ ++++..|.   .+++|++|++.++.-  + ...+..+++|++|+++++.--...+..+..+++|
T Consensus       203 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          203 LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            345667777777765 45423232   467777777776542  1 1245677888888888864333333344445555


Q ss_pred             Eee
Q 037108          236 VLW  238 (239)
Q Consensus       236 ~~~  238 (239)
                      +.+
T Consensus       282 ~~L  284 (440)
T 3zyj_A          282 ERI  284 (440)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.33  E-value=4.6e-12  Score=105.49  Aligned_cols=215  Identities=13%  Similarity=0.085  Sum_probs=109.5

Q ss_pred             CcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      ++++|++|++++| .+..+|. .++++++|++|++....- .......++++++|+ .|++.+..    ........+.+
T Consensus        67 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~~~  139 (390)
T 3o6n_A           67 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND----LSSLPRGIFHN  139 (390)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTT
T ss_pred             ccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCC-EEECCCCc----cCcCCHHHhcC
Confidence            4566777777777 3666653 667777777776643321 111223345556666 56654322    11111222456


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhcc-----CcceeeeeccCCCcee
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSIT-----GDSLFSRYARMGKWIP  155 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~-----~~~~~L~l~~~~~l~~  155 (239)
                      +++|+.|+++.+.....         ....+..+++|+.|++.++.....+ ..+..+.     +.. +-.+...++++.
T Consensus       140 l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~L~~  209 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEE  209 (390)
T ss_dssp             CTTCCEEECCSSCCCBC---------CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC-CSEEECCSSCSE
T ss_pred             CCCCcEEECCCCccCcc---------ChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc-ccccCCCCcceE
Confidence            67777777765432110         1223445667777777776544332 1111110     000 000011111111


Q ss_pred             eCC------CCCCCcCCcccEEeeccCcccccccc--CCCCcccEEEeccccc---cccccCCCCcccEEEecccCcccc
Q 037108          156 HGS------GKSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNGCKEVVG  224 (239)
Q Consensus       156 ~~~------~~~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~c~~l~~  224 (239)
                      +..      ..+...+++|++|+++++ .++ ..+  ..+++|++|+++++.-   .+..+..+++|++|++++|. +..
T Consensus       210 L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  286 (390)
T 3o6n_A          210 LDASHNSINVVRGPVNVELTILKLQHN-NLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVA  286 (390)
T ss_dssp             EECCSSCCCEEECCCCSSCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCE
T ss_pred             EECCCCeeeeccccccccccEEECCCC-CCc-ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Ccc
Confidence            110      001123567888888876 444 333  2578899999988752   12456788999999999864 444


Q ss_pred             ccccccCccceEe
Q 037108          225 RAINLSSSSSVVL  237 (239)
Q Consensus       225 ~~~~~~~l~~L~~  237 (239)
                      .+.....+++|+.
T Consensus       287 ~~~~~~~l~~L~~  299 (390)
T 3o6n_A          287 LNLYGQPIPTLKV  299 (390)
T ss_dssp             EECSSSCCTTCCE
T ss_pred             cCcccCCCCCCCE
Confidence            4444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.33  E-value=3.9e-13  Score=109.65  Aligned_cols=198  Identities=17%  Similarity=0.174  Sum_probs=122.4

Q ss_pred             cCcEEeCCCCCCCcccCccCCCC--ccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhH-HHHhccCcc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKL--TSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISA-AKEAQLNGK   82 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L--~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l   82 (239)
                      .++.++++++. +.  |..++++  +++++|++......  ..+..+.++++|+ .+++.+..    ... ..+..+..+
T Consensus        48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~-~L~L~~~~----l~~~~~~~~~~~~  117 (336)
T 2ast_B           48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQ-HMDLSNSV----IEVSTLHGILSQC  117 (336)
T ss_dssp             TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCC-EEECTTCE----ECHHHHHHHHTTB
T ss_pred             hheeecccccc-CC--HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCC-EEEccCCC----cCHHHHHHHHhhC
Confidence            47899999884 44  6667777  88888876433211  1122345667777 77765432    222 245567788


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC---ccchhhhccCcceeeeeccCCCceeeCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK---FAIYTLSITGDSLFSRYARMGKWIPHGSG  159 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~l~l~~~~~~L~l~~~~~l~~~~~~  159 (239)
                      ++|+.|+++.+..         ....+..+...++|+.|++.++....   ++..+..+.. -..|.+.++.++.....+
T Consensus       118 ~~L~~L~L~~~~l---------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          118 SKLQNLSLEGLRL---------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             CCCSEEECTTCBC---------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHH
T ss_pred             CCCCEEeCcCccc---------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHH
Confidence            9999999985431         23345566678999999999884322   2332211100 001344433333211001


Q ss_pred             CCCCcCC-cccEEeeccCc-ccc-cccc---CCCCcccEEEeccccccc----cccCCCCcccEEEecccCccc
Q 037108          160 KSDEGLA-DLRELFLVSCS-KLQ-RTLL---EYLPSLETLVIRKCEQLL----VSILSLPTLRKLTVNGCKEVV  223 (239)
Q Consensus       160 ~~~~~~~-~L~~L~l~~~~-~L~-~~~p---~~l~~L~~L~l~~c~~l~----~~~~~l~~L~~L~i~~c~~l~  223 (239)
                      ...+.++ +|++|++++|. .+. +.+|   ..+|+|++|++++|..+.    ..+..+++|++|++++|..+.
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            1234588 99999999985 343 2343   268999999999998543    256788999999999998554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.33  E-value=5e-12  Score=107.40  Aligned_cols=210  Identities=20%  Similarity=0.159  Sum_probs=133.9

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      .+.++.++. .++++|.++.  .++++|++....- .......++++++|+ .|++.+..    .....+..+.++++|+
T Consensus        56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~Ls~n~----i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNI-QMIQADTFRHLHHLE-VLQLGRNS----IRQIEVGAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred             CcEEEECCC-CcCccCCCCC--CCccEEECcCCcC-ceECHHHcCCCCCCC-EEECCCCc----cCCcChhhccCcccCC
Confidence            456777777 5899998776  6888887754321 112234567777777 77775432    2233345677889999


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKSDEGL  165 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~  165 (239)
                      .|+++.+.....         ....+..+++|+.|+++++....+|.. +..+.. -..|.+.++..+.... +..+..+
T Consensus       127 ~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~-~~~~~~l  195 (452)
T 3zyi_A          127 TLELFDNWLTVI---------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYIS-EGAFEGL  195 (452)
T ss_dssp             EEECCSSCCSBC---------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEEC-TTTTTTC
T ss_pred             EEECCCCcCCcc---------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccC-hhhccCC
Confidence            999986542211         122355678999999999876655542 111000 0024555554554443 3356789


Q ss_pred             CcccEEeeccCccccccccC--CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108          166 ADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      ++|++|+++++ +++ .+|.  .+++|++|+++++.-  + +..+..+++|++|++.++.--...+..+..+++|+.+
T Consensus       196 ~~L~~L~L~~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          196 FNLKYLNLGMC-NIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             TTCCEEECTTS-CCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCC-ccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            99999999987 665 5664  678999999998762  2 3467889999999999876544445555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.32  E-value=3.5e-12  Score=110.07  Aligned_cols=211  Identities=12%  Similarity=0.043  Sum_probs=108.9

Q ss_pred             ccCcEEeCCCCCCCc-ccCccC-----CCCccCCccCceEeccCCCCChhhhccc---ccccceEEEEeccCCCChhHHH
Q 037108            5 IKLHHLNNPSTDSLE-EMPQGI-----GKLTSLRTMCKFVVGNEIGSGLRQLKSL---IHLQGTVCISRLENVKEISAAK   75 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~-~lP~~i-----~~L~~L~~L~~~~~~~~~~~~i~~L~~L---~~L~~~L~~~~~~~~~~~~~~~   75 (239)
                      .+|++|++++|. +. .+|..+     +++++|+.+++......  .....+..+   ++++ .+.+.+..-.. .    
T Consensus       247 ~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~-~L~l~~n~l~~-~----  317 (520)
T 2z7x_B          247 TTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIK-NFTVSGTRMVH-M----  317 (520)
T ss_dssp             SSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCS-EEEEESSCCCC-C----
T ss_pred             CcccEEEeeccc-ccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCcee-EEEcCCCcccc-c----
Confidence            378888888884 44 889888     88888888876543321  010122222   3355 55554432111 0    


Q ss_pred             HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc---chhhhccCcceeeeeccCCC
Q 037108           76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA---IYTLSITGDSLFSRYARMGK  152 (239)
Q Consensus        76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~l~l~~~~~~L~l~~~~~  152 (239)
                       .....+++|+.|+++.+....         ..+..+..+++|+.|++.++....++   .++..+..- ..|.+.+.. 
T Consensus       318 -~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~-  385 (520)
T 2z7x_B          318 -LCPSKISPFLHLDFSNNLLTD---------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNS-  385 (520)
T ss_dssp             -CCCSSCCCCCEEECCSSCCCT---------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSC-
T ss_pred             -cchhhCCcccEEEeECCccCh---------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCc-
Confidence             011455667777766443211         12334455566777777666544322   222110000 001221110 


Q ss_pred             ceeeCCCCCCCcCCcccEEeeccCccccccccCCC-CcccEEEecccc--ccccccCCCCcccEEEecccCcccccccc-
Q 037108          153 WIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAIN-  228 (239)
Q Consensus       153 l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~-  228 (239)
                      +........+..+++|++|++++| ++.+.+|..+ ++|+.|+++++.  .++..+..+++|++|++++| ++...+.. 
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~  463 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGI  463 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCcccccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHH
Confidence            000000112455678888888876 4545666555 588888887764  34344557778888888876 34444443 


Q ss_pred             ccCccceEee
Q 037108          229 LSSSSSVVLW  238 (239)
Q Consensus       229 ~~~l~~L~~~  238 (239)
                      +..+++|+.+
T Consensus       464 ~~~l~~L~~L  473 (520)
T 2z7x_B          464 FDRLTSLQKI  473 (520)
T ss_dssp             TTTCTTCCEE
T ss_pred             hccCCcccEE
Confidence            5555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.32  E-value=2.8e-11  Score=103.16  Aligned_cols=57  Identities=23%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEe
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISR   64 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~   64 (239)
                      +++++|++|++++| .+..+|. ++++++|++|++..+.-   ..+..++++++|+ .|++..
T Consensus        87 ~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~l~~  143 (466)
T 1o6v_A           87 KNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQI---TDIDPLKNLTNLN-RLELSS  143 (466)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCCGGGTTCTTCS-EEEEEE
T ss_pred             hccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCC---CCChHHcCCCCCC-EEECCC
Confidence            45677777777777 4666665 77777777776643321   1222355555555 555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=106.34  Aligned_cols=16  Identities=13%  Similarity=0.341  Sum_probs=9.8

Q ss_pred             hhhcccccccceEEEEe
Q 037108           48 RQLKSLIHLQGTVCISR   64 (239)
Q Consensus        48 ~~L~~L~~L~~~L~~~~   64 (239)
                      ..++++++|+ .|++.+
T Consensus       109 ~~~~~l~~L~-~L~L~~  124 (520)
T 2z7x_B          109 KEFGNMSQLK-FLGLST  124 (520)
T ss_dssp             GGGGGCTTCC-EEEEEE
T ss_pred             hhhccCCcce-EEEecC
Confidence            4566666666 666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.32  E-value=1.6e-11  Score=104.65  Aligned_cols=81  Identities=21%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      ..+.+|++|++++| .++.+|+ ++++++|++|++..+..   ..+..++++++|+ .|++.+.. .....     .+..
T Consensus        65 ~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~-~L~L~~n~-l~~~~-----~~~~  132 (466)
T 1o6v_A           65 EYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQI---ADITPLANLTNLT-GLTLFNNQ-ITDID-----PLKN  132 (466)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCCCG-----GGTT
T ss_pred             hhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCcc---ccChhhcCCCCCC-EEECCCCC-CCCCh-----HHcC
Confidence            46789999999999 5888887 99999999998754322   2233377788888 78775532 22111     2667


Q ss_pred             ccccccceeEEcC
Q 037108           82 KRNLKDLLLEWNN   94 (239)
Q Consensus        82 l~~L~~L~l~~~~   94 (239)
                      +++|+.|+++.+.
T Consensus       133 l~~L~~L~l~~n~  145 (466)
T 1o6v_A          133 LTNLNRLELSSNT  145 (466)
T ss_dssp             CTTCSEEEEEEEE
T ss_pred             CCCCCEEECCCCc
Confidence            7888888888664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=6e-12  Score=110.57  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=116.4

Q ss_pred             CcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      ++++|++|++++| .+..+|+ .++++++|++|++..... .......++++++|+ .|.+.+..    ........+.+
T Consensus        73 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~~~  145 (597)
T 3oja_B           73 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND----LSSLPRGIFHN  145 (597)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTT
T ss_pred             cCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC-EEEeeCCC----CCCCCHHHhcc
Confidence            4677888888887 4666654 778888888887654332 222233456666666 66665432    11222233566


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhcc-----CcceeeeeccCCCcee
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSIT-----GDSLFSRYARMGKWIP  155 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~-----~~~~~L~l~~~~~l~~  155 (239)
                      +++|+.|+++.+.....         .+..+..+++|+.|++.++....++ ..+..+.     +.. +-.+...+++..
T Consensus       146 l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~L~~  215 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEE  215 (597)
T ss_dssp             CTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC-CSEEECCTTCSE
T ss_pred             CCCCCEEEeeCCcCCCC---------ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc-cccccCCchhhe
Confidence            77888888875542211         1233555678888888776544432 1111110     000 000011111211


Q ss_pred             eCCC------CCCCcCCcccEEeeccCcccccccc--CCCCcccEEEeccccc---cccccCCCCcccEEEecccCcccc
Q 037108          156 HGSG------KSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNGCKEVVG  224 (239)
Q Consensus       156 ~~~~------~~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~c~~l~~  224 (239)
                      +...      .....+++|+.|+++++ .+. ..+  ..+++|+.|+++++.-   .+..+..+++|++|++++|. +..
T Consensus       216 L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~  292 (597)
T 3oja_B          216 LDASHNSINVVRGPVNVELTILKLQHN-NLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVA  292 (597)
T ss_dssp             EECCSSCCCEEECSCCSCCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCE
T ss_pred             eeccCCcccccccccCCCCCEEECCCC-CCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCC
Confidence            1100      01123467888888876 454 222  2578899999988762   23467788999999999864 444


Q ss_pred             ccccccCccceEe
Q 037108          225 RAINLSSSSSVVL  237 (239)
Q Consensus       225 ~~~~~~~l~~L~~  237 (239)
                      .+.....+++|+.
T Consensus       293 l~~~~~~l~~L~~  305 (597)
T 3oja_B          293 LNLYGQPIPTLKV  305 (597)
T ss_dssp             EECSSSCCTTCCE
T ss_pred             CCcccccCCCCcE
Confidence            4444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.30  E-value=1.7e-12  Score=105.23  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             CcccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108            3 NLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS   63 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~   63 (239)
                      .+++|++|++++| .++.+| ..++++++|++|++....-.   .+..+..+++|+ .|++.
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~l~~L~-~L~Ls   88 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLR-TLDLN   88 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCE---EEEEETTCTTCC-EEECC
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCC---cchhhhhcCCCC-EEECc
Confidence            3568999999999 477776 57899999999987432211   112255566666 56554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.30  E-value=1.6e-11  Score=99.21  Aligned_cols=186  Identities=17%  Similarity=0.153  Sum_probs=119.6

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+|++|++++| .++.+| +++++++|++|++..+.-   ..+..+.++++|+ .|++.+.. +...     ..+..+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i---~~~~~~~~l~~L~-~L~L~~n~-l~~~-----~~~~~l  106 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQI---TDLAPLKNLTKIT-ELELSGNP-LKNV-----SAIAGL  106 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCCSCC-EEECCSCC-CSCC-----GGGTTC
T ss_pred             HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcC---CCChhHccCCCCC-EEEccCCc-CCCc-----hhhcCC
Confidence            4778999999999 588888 689999999998754332   2233377777777 77775443 2211     246778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+....           ...+..+++|+.|++.++.....+. +..+..- ..|.+.+. .+..   .+.+
T Consensus       107 ~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L-~~L~l~~n-~l~~---~~~l  169 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-----------VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNL-QYLSIGNA-QVSD---LTPL  169 (308)
T ss_dssp             TTCCEEECTTSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTC-CEEECCSS-CCCC---CGGG
T ss_pred             CCCCEEECCCCCCCC-----------chhhcCCCCCCEEECCCCccCcCcc-ccCCCCc-cEEEccCC-cCCC---Chhh
Confidence            889999988654221           1235667899999998886655543 1110000 01222221 1111   1225


Q ss_pred             CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      ..+++|++|+++++ +++ .++  ..+++|++|+++++.  .+. .+..+++|++|++++++
T Consensus       170 ~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          170 ANLSKLTTLKADDN-KIS-DISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TTCTTCCEEECCSS-CCC-CCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             cCCCCCCEEECCCC-ccC-cChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence            67889999999876 555 443  268899999998876  232 46788899999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.30  E-value=6.4e-12  Score=110.33  Aligned_cols=217  Identities=15%  Similarity=0.129  Sum_probs=116.6

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +.+.+|++|+++++ .+..+| .++++++|++|++..+..   ..+..+ .+++|+ .+.+.......      ...+..
T Consensus       282 ~~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l---~~lp~~-~l~~L~-~L~l~~n~~~~------~~~~~~  348 (606)
T 3vq2_A          282 HCLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQL---KQFPTL-DLPFLK-SLTLTMNKGSI------SFKKVA  348 (606)
T ss_dssp             GGGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCC---SSCCCC-CCSSCC-EEEEESCSSCE------ECCCCC
T ss_pred             ccCCCCCEEEecCc-cchhhh-hccccccCCEEEcccccC---cccccC-CCCccc-eeeccCCcCcc------chhhcc
Confidence            35677888888888 477788 788888888887655433   122233 566666 66665443211      113445


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhc--------cCcce-----eeeec
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSI--------TGDSL-----FSRYA  148 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l--------~~~~~-----~L~l~  148 (239)
                      +++|+.|+++.+....       .......+..+++|+.|++.++.....|..+..+        .+..-     +-.+.
T Consensus       349 l~~L~~L~ls~n~l~~-------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSF-------SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             CTTCCEEECCSSCEEE-------EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             CCCCCEEECcCCccCC-------CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence            5666666665332100       0000111222344444544444322222111000        00000     00111


Q ss_pred             cCCCceeeC---------CCCCCCcCCcccEEeeccCcccccc-ccC---CCCcccEEEecccccc---ccccCCCCccc
Q 037108          149 RMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRT-LLE---YLPSLETLVIRKCEQL---LVSILSLPTLR  212 (239)
Q Consensus       149 ~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~-~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~  212 (239)
                      .+++++.+.         .+..++.+++|++|++++| .+.+. +|.   .+++|++|++++|.--   +..+..+++|+
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence            222222211         1345677888999999877 45432 453   5688999999887521   23567889999


Q ss_pred             EEEecccCccccccccccCccceEeeC
Q 037108          213 KLTVNGCKEVVGRAINLSSSSSVVLWD  239 (239)
Q Consensus       213 ~L~i~~c~~l~~~~~~~~~l~~L~~~~  239 (239)
                      +|++++|.-....+..+..+++|+.+|
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEE
Confidence            999999865555577777766666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.30  E-value=1.5e-12  Score=104.99  Aligned_cols=215  Identities=18%  Similarity=0.125  Sum_probs=129.9

Q ss_pred             ccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCC-CCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            5 IKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEI-GSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~-~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      .+|++|+++++ .++.+|.+ ++++++|++|++....-.. +........+++|+ .|++.+..    .. ..+..+..+
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~-~L~Ls~n~----i~-~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK-YLDLSFNG----VI-TMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC-EEECCSCS----EE-EEEEEEETC
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC-EEECCCCc----cc-cChhhcCCC
Confidence            57999999999 58999977 6999999999875432110 01123444567777 77765432    11 123346678


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      ++|+.|+++.+....        ......+..+++|+.|++.++..... +..+..+..- ..+.+.+.. +.....+..
T Consensus       101 ~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~-l~~~~~~~~  170 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQ--------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNS-FQENFLPDI  170 (306)
T ss_dssp             TTCCEEECTTSEEES--------STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCE-EGGGEECSC
T ss_pred             CCCCEEECCCCcccc--------cccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCc-cccccchhH
Confidence            899999987543211        01123456678999999988764332 2222111000 012222210 111011456


Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cc-cccCCCCcccEEEecccCccccccccccCc-cc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCKEVVGRAINLSSS-SS  234 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l-~~  234 (239)
                      ++.+++|++|+++++ ++++..|.   .+++|++|+++++.-  +. ..+..+++|++|++++|.-....+..+..+ ++
T Consensus       171 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          171 FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             CTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             HhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence            678999999999987 56533343   578999999988762  22 256788999999999986555555555444 24


Q ss_pred             eEe
Q 037108          235 VVL  237 (239)
Q Consensus       235 L~~  237 (239)
                      |+.
T Consensus       250 L~~  252 (306)
T 2z66_A          250 LAF  252 (306)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=3.6e-12  Score=115.98  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=76.4

Q ss_pred             CCCcccCcEEeCCCCCCCcc------------------cCccCC--CCccCCccCceEeccCCCCChhhhcccccccceE
Q 037108            1 MGNLIKLHHLNNPSTDSLEE------------------MPQGIG--KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV   60 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L   60 (239)
                      +++|++|++|++++|. +..                  +|++++  +|++|++|++..+.. .+..+..++++++|+ .|
T Consensus       444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~-~L  520 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQ-SL  520 (876)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCC-EE
T ss_pred             HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCC-EE
Confidence            4678999999999995 666                  999999  999999998865432 233446688888888 77


Q ss_pred             EEEeccCCCChhH-HHHh-------ccCcccccccceeEEcCCCCCCCCCcchHHHhh--cCCCCCCcceEEEeccCCCC
Q 037108           61 CISRLENVKEISA-AKEA-------QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLD--LLKPHQSLKKLKINGYGGTK  130 (239)
Q Consensus        61 ~~~~~~~~~~~~~-~~~~-------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~  130 (239)
                      .+.+...+   .. ..+.       .+..+++|+.|+++.+...          .++.  .+..+++|+.|+++++....
T Consensus       521 ~Ls~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----------~ip~~~~l~~L~~L~~L~Ls~N~l~~  587 (876)
T 4ecn_A          521 NIACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----------EFPASASLQKMVKLGLLDCVHNKVRH  587 (876)
T ss_dssp             ECTTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----------BCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred             ECcCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCC----------ccCChhhhhcCCCCCEEECCCCCccc
Confidence            77543312   11 2233       2334458888888855422          2333  45556677777777765555


Q ss_pred             cc
Q 037108          131 FA  132 (239)
Q Consensus       131 ~p  132 (239)
                      +|
T Consensus       588 lp  589 (876)
T 4ecn_A          588 LE  589 (876)
T ss_dssp             CC
T ss_pred             ch
Confidence            55

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=3.8e-12  Score=103.75  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=43.9

Q ss_pred             CCCCcCCcccEEeeccCcccccccc---CCCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      ..+..+++|++|+++++ .+.+..+   ..+++|++|+++++.  .++..+..+++|++|++++++
T Consensus       211 ~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence            35667889999999876 5552322   257899999998765  444567788999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.29  E-value=3.2e-11  Score=105.13  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=14.6

Q ss_pred             cccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108          189 SLETLVIRKCE--QLLVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       189 ~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c  219 (239)
                      +|++|+++++.  .++..+..+++|++|+++++
T Consensus       451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred             cCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence            45555554442  12223334555666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.29  E-value=2.2e-12  Score=113.29  Aligned_cols=198  Identities=18%  Similarity=0.051  Sum_probs=113.2

Q ss_pred             CCcccCcEEeCCCCCCCccc---CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH-h
Q 037108            2 GNLIKLHHLNNPSTDSLEEM---PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE-A   77 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~l---P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~-~   77 (239)
                      +.+++|++|++++|. +..+   |..++++++|++|++..+....  ....+..+++|+ .+.+.+..    .....+ .
T Consensus       347 ~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~  418 (606)
T 3vq2_A          347 VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQ-HLDFQHST----LKRVTEFS  418 (606)
T ss_dssp             CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCC-EEECTTSE----EESTTTTT
T ss_pred             ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCC-eeECCCCc----cCCccChh
Confidence            568899999999984 6665   7788899999999775432111  113455566666 66654322    111112 3


Q ss_pred             ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCcee
Q 037108           78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIP  155 (239)
Q Consensus        78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~  155 (239)
                      .+..+++|+.|+++.+...         ...+..+..+++|+.|++.++....  .|..+..+..- ..|.+.++ .+..
T Consensus       419 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n-~l~~  487 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTK---------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-TFLDLSKC-QLEQ  487 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCE---------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTS-CCCE
T ss_pred             hhhccccCCEEECcCCCCC---------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-CEEECCCC-cCCc
Confidence            4667788888888754321         1123345566788888888765432  23322110000 01222222 1111


Q ss_pred             eCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCC-cccEEEecccC
Q 037108          156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLP-TLRKLTVNGCK  220 (239)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~-~L~~L~i~~c~  220 (239)
                      . .+..++.+++|++|+++++ ++.+..|.   .+++|+.|+++++.  .++..+..++ +|+++++.+++
T Consensus       488 ~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          488 I-SWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             E-CTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             c-ChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence            1 1344667888888888877 55544453   46778888887765  2333455666 58888887653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=4.4e-11  Score=94.66  Aligned_cols=192  Identities=15%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      +.++++++++ .++.+|..+.  .++++|++....- .......+.++++|+ .|.+.+..    ........+.++++|
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKL-SSLPSKAFHRLTKLR-LLYLNDNK----LQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-SCCCTTSSSSCTTCC-EEECCSSC----CSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCC-CeeCHHHhcCCCCCC-EEECCCCc----cCeeChhhhcCCCCC
Confidence            3456666666 3666665554  4556655433221 111112344555555 55553321    111112223455666


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCCCCc
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKSDEG  164 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~  164 (239)
                      +.|+++.+.....         ....+..+++|+.|++.++....++.. +..+..- ..|.+.+. .+.... +..++.
T Consensus        88 ~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n-~l~~~~-~~~~~~  155 (270)
T 2o6q_A           88 ETLWVTDNKLQAL---------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYN-ELQSLP-KGVFDK  155 (270)
T ss_dssp             CEEECCSSCCCCC---------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCCCCC-TTTTTT
T ss_pred             CEEECCCCcCCcC---------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCC-cCCccC-HhHccC
Confidence            6666664432110         011223445666666666544433321 1000000 00111111 011110 123566


Q ss_pred             CCcccEEeeccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108          165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~  220 (239)
                      +++|++|+++++ .++ .++.    .+++|++|+++++.  .+.. .+..+++|+.|++.+++
T Consensus       156 l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          156 LTSLKELRLYNN-QLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccceeEecCC-cCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            888899998876 555 4432    46788888888764  2222 35667888888888754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=4.1e-11  Score=94.84  Aligned_cols=174  Identities=18%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|+++++ .++.+|. .++++++|++|++....-. ......++++++|+ .|.+.+..    ........+..++
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE-TLWVTDNK----LQALPIGVFDQLV  109 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCC-EEECCSSC----CCCCCTTTTTTCS
T ss_pred             CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCC-EEECCCCc----CCcCCHhHccccc
Confidence            46899999999 4788875 6899999999987543221 11112245666777 77765432    1122224456778


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh-hhccCcceeeeeccCCCceeeCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT-LSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.++....+|... ..+..- ..+.+.+. .+... .+..+
T Consensus       110 ~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n-~l~~~-~~~~~  177 (270)
T 2o6q_A          110 NLAELRLDRNQLKSL---------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-KELRLYNN-QLKRV-PEGAF  177 (270)
T ss_dssp             SCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCSCC-CTTTT
T ss_pred             CCCEEECCCCccCee---------CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-ceeEecCC-cCcEe-ChhHh
Confidence            899999886543211         1223456789999999888766655421 110000 01222211 11111 12345


Q ss_pred             CcCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE  199 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~  199 (239)
                      ..+++|++|+++++ +++ .+|.    .+++|+.|++.+++
T Consensus       178 ~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          178 DKLTELKTLKLDNN-QLK-RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCcCEEECCCC-cCC-cCCHHHhccccCCCEEEecCCC
Confidence            67899999999987 676 5543    57899999998755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.27  E-value=2.7e-11  Score=96.03  Aligned_cols=171  Identities=18%  Similarity=0.160  Sum_probs=101.8

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+|+.|+++++ .++.+| +++++++|++|++.....   ..+..++++++|+ .|.+.+..    ........+..+
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~L~~n~----l~~~~~~~~~~l  108 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKL---HDISALKELTNLT-YLILTGNQ----LQSLPNGVFDKL  108 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCC---CCCGGGTTCTTCC-EEECTTSC----CCCCCTTTTTTC
T ss_pred             cccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCC---CCchhhcCCCCCC-EEECCCCc----cCccChhHhcCC
Confidence            4678999999998 477776 588999999998754332   2345677777777 77764432    222223346677


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+.....         ....+..+++|+.|++.++....+|.                          ..+
T Consensus       109 ~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~  153 (272)
T 3rfs_A          109 TNLKELVLVENQLQSL---------PDGVFDKLTNLTYLNLAHNQLQSLPK--------------------------GVF  153 (272)
T ss_dssp             TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTT
T ss_pred             cCCCEEECCCCcCCcc---------CHHHhccCCCCCEEECCCCccCccCH--------------------------HHh
Confidence            8889988885542211         11224556789999998875544432                          122


Q ss_pred             CcCCcccEEeeccCcccccccc---CCCCcccEEEeccccc--cc-cccCCCCcccEEEeccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGC  219 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c  219 (239)
                      +.+++|++|+++++ ++++..+   ..+++|++|+++++.-  +. ..+..+++|++|++.++
T Consensus       154 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          154 DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            44566666666655 4442222   1356666666665541  11 12455666666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.27  E-value=3.6e-11  Score=97.09  Aligned_cols=167  Identities=15%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +.+++|++|++++| .++.+|. ++++++|++|++....-   ..+..+.++++|+ .|.+.+.. +...     ..+..
T Consensus        60 ~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~l~~n~-l~~~-----~~l~~  127 (308)
T 1h6u_A           60 QYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPL---KNVSAIAGLQSIK-TLDLTSTQ-ITDV-----TPLAG  127 (308)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCC---SCCGGGTTCTTCC-EEECTTSC-CCCC-----GGGTT
T ss_pred             hccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcC---CCchhhcCCCCCC-EEECCCCC-CCCc-----hhhcC
Confidence            46889999999999 5899998 99999999998865432   2345677777777 77765432 2211     23677


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +++|+.|+++.+.....           ..+..+++|+.|++.++....++. +..+..- ..|.+.+. .+..   .+.
T Consensus       128 l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L-~~L~l~~n-~l~~---~~~  190 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNI-----------SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKL-TTLKADDN-KISD---ISP  190 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-----------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC-CEEECCSS-CCCC---CGG
T ss_pred             CCCCCEEECCCCccCcC-----------ccccCCCCccEEEccCCcCCCChh-hcCCCCC-CEEECCCC-ccCc---Chh
Confidence            88999999986643211           114556799999999886655543 1110000 01222211 1111   123


Q ss_pred             CCcCCcccEEeeccCcccccccc--CCCCcccEEEecccc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE  199 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~  199 (239)
                      +..+++|++|+++++ ++. .++  ..+++|+.|++++++
T Consensus       191 l~~l~~L~~L~L~~N-~l~-~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          191 LASLPNLIEVHLKNN-QIS-DVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GGGCTTCCEEECTTS-CCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred             hcCCCCCCEEEccCC-ccC-ccccccCCCCCCEEEccCCe
Confidence            567999999999987 565 333  268999999998876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=9.5e-12  Score=113.20  Aligned_cols=82  Identities=13%  Similarity=0.115  Sum_probs=50.1

Q ss_pred             CcccCcEEeCCCCCCCcccCc--cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      .+++|++|++++| .+..+|.  .++++++|++|++......   .+..++++++|+ .|.+.+..-    . ..+..+.
T Consensus       546 ~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~-~L~Ls~N~l----~-~lp~~l~  615 (876)
T 4ecn_A          546 TGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLT-DLKLDYNQI----E-EIPEDFC  615 (876)
T ss_dssp             TTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEES-EEECCSSCC----S-CCCTTSC
T ss_pred             ccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcce-EEECcCCcc----c-cchHHHh
Confidence            4558888888888 4678888  8888888888876443221   222556666666 565543221    1 2233455


Q ss_pred             cccc-cccceeEEcC
Q 037108           81 GKRN-LKDLLLEWNN   94 (239)
Q Consensus        81 ~l~~-L~~L~l~~~~   94 (239)
                      .+++ |+.|.++.+.
T Consensus       616 ~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          616 AFTDQVEGLGFSHNK  630 (876)
T ss_dssp             EECTTCCEEECCSSC
T ss_pred             hccccCCEEECcCCC
Confidence            5666 7777666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=3.4e-11  Score=97.97  Aligned_cols=217  Identities=15%  Similarity=0.070  Sum_probs=121.7

Q ss_pred             CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCC-C-------------------CChhhhcccccccce
Q 037108            1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEI-G-------------------SGLRQLKSLIHLQGT   59 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~-~-------------------~~i~~L~~L~~L~~~   59 (239)
                      ++++++|++|++++|. ++.+ |..++++++|++|++....-.. +                   .....++++++|+ .
T Consensus        72 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~  149 (330)
T 1xku_A           72 FKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI-V  149 (330)
T ss_dssp             TTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCC-E
T ss_pred             hccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCcccc-E
Confidence            4678899999999984 7776 7889999999999775432110 0                   0011233444444 4


Q ss_pred             EEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhc
Q 037108           60 VCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSI  138 (239)
Q Consensus        60 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l  138 (239)
                      +++....- . ........+.++++|+.|.++.+...          .++..+  .++|+.|++.++..... |..+..+
T Consensus       150 L~l~~n~l-~-~~~~~~~~~~~l~~L~~L~l~~n~l~----------~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          150 VELGTNPL-K-SSGIENGAFQGMKKLSYIRIADTNIT----------TIPQGL--PPSLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             EECCSSCC-C-GGGBCTTGGGGCTTCCEEECCSSCCC----------SCCSSC--CTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             EECCCCcC-C-ccCcChhhccCCCCcCEEECCCCccc----------cCCccc--cccCCEEECCCCcCCccCHHHhcCC
Confidence            44432111 0 01122234455666777766644321          111111  26899999988765444 2332111


Q ss_pred             cCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--cccc-cc------C
Q 037108          139 TGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SI------L  206 (239)
Q Consensus       139 ~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~------~  206 (239)
                      ..- ..|.+.+. .+.... +..++.+++|++|+++++ ++. .+|.   .+++|++|+++++.  .+.. .+      .
T Consensus       216 ~~L-~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~  290 (330)
T 1xku_A          216 NNL-AKLGLSFN-SISAVD-NGSLANTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  290 (330)
T ss_dssp             TTC-CEEECCSS-CCCEEC-TTTGGGSTTCCEEECCSS-CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             CCC-CEEECCCC-cCceeC-hhhccCCCCCCEEECCCC-cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence            000 01222221 111111 235677899999999987 676 7765   57899999998865  2221 11      1


Q ss_pred             CCCcccEEEecccCccc--cccccccCccceEee
Q 037108          207 SLPTLRKLTVNGCKEVV--GRAINLSSSSSVVLW  238 (239)
Q Consensus       207 ~l~~L~~L~i~~c~~l~--~~~~~~~~l~~L~~~  238 (239)
                      ..++++.+++.+.+-..  ..+..+..+++++.+
T Consensus       291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l  324 (330)
T 1xku_A          291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV  324 (330)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred             ccccccceEeecCcccccccCccccccccceeEE
Confidence            34789999999987532  445566666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.25  E-value=2.4e-11  Score=91.73  Aligned_cols=55  Identities=11%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS   63 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~   63 (239)
                      ++.+|++|+++++ .++.+| +++++++|++|++..+   ....+..+..+++|+ .+.+.
T Consensus        42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n---~~~~~~~l~~l~~L~-~L~l~   96 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI---HATNYNPISGLSNLE-RLRIM   96 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC---CCSCCGGGTTCTTCC-EEEEE
T ss_pred             hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC---CCCcchhhhcCCCCC-EEEeE
Confidence            3567778888777 467777 6777777777766433   122333444455555 45544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=1.3e-11  Score=99.84  Aligned_cols=175  Identities=16%  Similarity=0.046  Sum_probs=106.3

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCC-----ccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKL-----TSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE   76 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L-----~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~   76 (239)
                      +.+++|++|++++| .++.+|..++++     ++|++|++....- .......++++++|+ .+++.+..-.  .....+
T Consensus       118 ~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~l~--~~~~~~  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALS-TLDLSDNPEL--GERGLI  192 (312)
T ss_dssp             CCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCC-EEECCSCTTC--HHHHHH
T ss_pred             hcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCC-EEECCCCCcC--cchHHH
Confidence            67899999999999 578889888888     8999998754432 223335577777777 7777543311  111122


Q ss_pred             hcc--CcccccccceeEEcCCCCCCCCCcchHHHhhc-CCCCCCcceEEEeccCCCCcc--chh---hhccCcceeeeec
Q 037108           77 AQL--NGKRNLKDLLLEWNNSTSNIREPETDTCVLDL-LKPHQSLKKLKINGYGGTKFA--IYT---LSITGDSLFSRYA  148 (239)
Q Consensus        77 ~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p--~~~---l~l~~~~~~L~l~  148 (239)
                      ..+  ..+++|+.|+++.+...       ....+... ...+++|+.|+++++.....+  ..+   ..++    .|.+.
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~----~L~Ls  261 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGME-------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN----SLNLS  261 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCC-------CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC----EEECT
T ss_pred             HHHHhccCCCCCEEECCCCcCc-------chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC----EEECC
Confidence            233  77889999999855421       11122222 234579999999987654432  111   0000    12222


Q ss_pred             cCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108          149 RMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE  199 (239)
Q Consensus       149 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~  199 (239)
                      +. .+.  ..|...  +++|++|+++++ +++ .+|.  .+++|++|++++.+
T Consensus       262 ~N-~l~--~ip~~~--~~~L~~L~Ls~N-~l~-~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          262 FT-GLK--QVPKGL--PAKLSVLDLSYN-RLD-RNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             TS-CCS--SCCSSC--CSEEEEEECCSS-CCC-SCCCTTTSCEEEEEECTTCT
T ss_pred             CC-ccC--hhhhhc--cCCceEEECCCC-CCC-CChhHhhCCCCCEEeccCCC
Confidence            21 111  112222  389999999976 676 4464  67899999987754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.25  E-value=1.1e-11  Score=98.25  Aligned_cols=169  Identities=16%  Similarity=0.115  Sum_probs=107.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +++++|++|++++| .+..+| .++++++|++|++....-. ......++++++|+ .|++.+..    .....+..+..
T Consensus        60 ~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~  131 (272)
T 3rfs_A           60 QYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK-ELVLVENQ----LQSLPDGVFDK  131 (272)
T ss_dssp             GGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTT
T ss_pred             ccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC-EEECCCCc----CCccCHHHhcc
Confidence            56889999999999 477776 7999999999987543221 12222356677777 77765432    22223344677


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +++|+.|+++.+.....         ....+..+++|+.|++.++....+|.                          ..
T Consensus       132 l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------~~  176 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSL---------PKGVFDKLTNLTELDLSYNQLQSLPE--------------------------GV  176 (272)
T ss_dssp             CTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TT
T ss_pred             CCCCCEEECCCCccCcc---------CHHHhccCccCCEEECCCCCcCccCH--------------------------HH
Confidence            88999999986643211         11234567899999999886544332                          22


Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccccccccCCCCcccEEEecc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~  218 (239)
                      ++.+++|++|+++++ .+++..|.   .+++|++|++.+++-    .+.+|.|+.+.+..
T Consensus       177 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI  231 (272)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred             hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence            356788888888876 56533332   468888888877642    13344455444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.24  E-value=1.8e-11  Score=106.60  Aligned_cols=217  Identities=17%  Similarity=0.090  Sum_probs=113.9

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +.+.+|++|++++| .++.+|..++++ +|++|++..+...   .+.. ..+++|+ .+.+.+......      .....
T Consensus       279 ~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~---~l~~-~~l~~L~-~L~l~~n~~~~~------~~~~~  345 (570)
T 2z63_A          279 NCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFG---QFPT-LKLKSLK-RLTFTSNKGGNA------FSEVD  345 (570)
T ss_dssp             GGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCS---SCCB-CBCSSCC-EEEEESCBSCCB------CCCCB
T ss_pred             cCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCccc---ccCc-ccccccC-EEeCcCCccccc------ccccc
Confidence            35788999999998 478899999888 9999877544322   1111 3455566 666654332110      01144


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhh--------ccCcce-----eeeec
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLS--------ITGDSL-----FSRYA  148 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~--------l~~~~~-----~L~l~  148 (239)
                      +++|+.|+++.+....       .......+...++|+.|++.++.....|..+..        +.+..-     .-.+.
T Consensus       346 ~~~L~~L~l~~n~l~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSF-------KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CTTCCEEECCSSCCBE-------EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             CCCCCEEeCcCCccCc-------cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhh
Confidence            5667777666432110       000011222344555555555433222211100        000000     00111


Q ss_pred             cCCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccE
Q 037108          149 RMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRK  213 (239)
Q Consensus       149 ~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~  213 (239)
                      .+++++.+.         .+..++.+++|++|++++|.--.+.+|.   .+++|++|++++|.-  + +..+..+++|++
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            222222221         1334566788888888877422234554   567888888887752  2 235667888888


Q ss_pred             EEecccCccccccccccCccceEee
Q 037108          214 LTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       214 L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      |++++|.--...+..+..+++|+.+
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEE
Confidence            8888874333334445555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.23  E-value=1.7e-11  Score=97.27  Aligned_cols=193  Identities=15%  Similarity=0.054  Sum_probs=106.3

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .+|++|+++++ .++.+|. .++++++|++|++....-. ......++++++|+ .+++.+..    .....+..+.+++
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS-TLILTGNP----IQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCC-EEECTTCC----CCEECTTTTTTCT
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCC-EEECCCCc----cCccChhhhcCCc
Confidence            35899999999 5788875 7889999999977543211 11122356666666 66654322    2222234566778


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +|+.|.+..+.....         ....+..+++|+.|++.++....  +|.++..+..-. .+.+.+. .+.... +..
T Consensus       101 ~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N-~l~~~~-~~~  168 (276)
T 2z62_A          101 SLQKLVAVETNLASL---------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSN-KIQSIY-CTD  168 (276)
T ss_dssp             TCCEEECTTSCCCCS---------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSS-CCCEEC-GGG
T ss_pred             cccEEECCCCCcccc---------CchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCC-CCCcCC-HHH
Confidence            888888875432211         01124566788999888876544  455432111000 0111111 011110 112


Q ss_pred             CCcCCccc----EEeeccCccccccccC---CCCcccEEEecccc--cccc-ccCCCCcccEEEecc
Q 037108          162 DEGLADLR----ELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNG  218 (239)
Q Consensus       162 ~~~~~~L~----~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~  218 (239)
                      +..+++|+    +|+++++ .++ .++.   ...+|++|+++++.  .+.. .+..+++|++|++++
T Consensus       169 ~~~l~~L~~l~l~L~ls~n-~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLN-PMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSS-CCC-EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             hhhhhhccccceeeecCCC-ccc-ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            23344444    6777765 454 3432   33478888888765  2222 346788899999884

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=4e-11  Score=109.33  Aligned_cols=72  Identities=15%  Similarity=0.007  Sum_probs=47.5

Q ss_pred             CcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108          166 ADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW  238 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~  238 (239)
                      ++|+.|+++++ .+.+..|.   .+++|+.|++.++.-  + ...+..+++|++|++++|.--...+..+..+++|+.+
T Consensus       266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence            67888888766 44423332   578888888887652  2 2356778899999999886444445556666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=107.29  Aligned_cols=73  Identities=19%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             CcCCcccEEeeccCcccccccc-CCCCcccEEEeccccc--c---ccccCCCCcccEEEecccCccccccccccCccceE
Q 037108          163 EGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCEQ--L---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV  236 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~~--l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~  236 (239)
                      +.+++|++|++.++.. .+.++ ..+++|++|+++++.-  .   ...+..+++|++|++++|.-.... ..+..+++|+
T Consensus       322 ~~l~~L~~L~l~~n~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~  399 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLE  399 (570)
T ss_dssp             CBCSSCCEEEEESCBS-CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCC
T ss_pred             ccccccCEEeCcCCcc-ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-ccccccCCCC
Confidence            3566677777766532 22333 3577777777776652  1   234556788888888877533322 2244444444


Q ss_pred             e
Q 037108          237 L  237 (239)
Q Consensus       237 ~  237 (239)
                      .
T Consensus       400 ~  400 (570)
T 2z63_A          400 H  400 (570)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=1.3e-10  Score=98.94  Aligned_cols=200  Identities=16%  Similarity=0.065  Sum_probs=107.5

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +++.+|++|+++++ .++.+| +++++++|++|++....-..   + .++++++|+ .|++.+.. +...      .+..
T Consensus        39 ~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~---~-~~~~l~~L~-~L~Ls~N~-l~~~------~~~~  104 (457)
T 3bz5_A           39 EQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITT---L-DLSQNTNLT-YLACDSNK-LTNL------DVTP  104 (457)
T ss_dssp             HHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSC---C-CCTTCTTCS-EEECCSSC-CSCC------CCTT
T ss_pred             hHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCe---E-ccccCCCCC-EEECcCCC-Ccee------ecCC
Confidence            45788999999998 588887 68999999999875543222   2 266677777 77765432 1111      2667


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeee-----------cc
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRY-----------AR  149 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l-----------~~  149 (239)
                      +++|+.|+++.+....          +  .+..+++|+.|++.++....++- .+..++    .+.+           ..
T Consensus       105 l~~L~~L~L~~N~l~~----------l--~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~----~L~l~~n~~~~~~~~~~  168 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK----------L--DVSQNPLLTYLNCARNTLTEIDVSHNTQLT----ELDCHLNKKITKLDVTP  168 (457)
T ss_dssp             CTTCCEEECCSSCCSC----------C--CCTTCTTCCEEECTTSCCSCCCCTTCTTCC----EEECTTCSCCCCCCCTT
T ss_pred             CCcCCEEECCCCcCCe----------e--cCCCCCcCCEEECCCCccceeccccCCcCC----EEECCCCCccccccccc
Confidence            7888888888654221          1  14456677777777665433320 000000    0111           11


Q ss_pred             CCCceeeCC------CCCCCcCCcccEEeeccCcccccccc-CCCCcccEEEeccccccccccCCCCcccEEEecccCcc
Q 037108          150 MGKWIPHGS------GKSDEGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       150 ~~~l~~~~~------~~~~~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l  222 (239)
                      +++++.+..      ..+++.+++|+.|+++++ +++ .++ ..+++|++|+++++.--...+..+++|++|+++++.--
T Consensus       169 l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N-~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-NIT-KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS-CCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred             CCcCCEEECCCCccceeccccCCCCCEEECcCC-cCC-eeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCC
Confidence            222222110      012444556666666544 343 222 24566666666655421112556677777777776432


Q ss_pred             ccccccccCcc
Q 037108          223 VGRAINLSSSS  233 (239)
Q Consensus       223 ~~~~~~~~~l~  233 (239)
                      ...+..+++++
T Consensus       247 ~~~~~~l~~L~  257 (457)
T 3bz5_A          247 ELDVSTLSKLT  257 (457)
T ss_dssp             CCCCTTCTTCC
T ss_pred             CcCHHHCCCCC
Confidence            22233444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.22  E-value=7.7e-11  Score=107.50  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhh--hcccccccceEEEEeccCCCChhHHHHh
Q 037108            1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQ--LKSLIHLQGTVCISRLENVKEISAAKEA   77 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~--L~~L~~L~~~L~~~~~~~~~~~~~~~~~   77 (239)
                      ++++++||+|++++|. +..+ |..++++++|++|++..+.-.. ..+..  ++++++|+ .|++....-.. .  ....
T Consensus        69 f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~-~L~Ls~N~l~~-~--~~~~  142 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALT-RLDLSKNQIRS-L--YLHP  142 (844)
T ss_dssp             TSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCC-EEEEESCCCCC-C--CCCG
T ss_pred             hcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCC-EEECCCCcccc-c--ccch
Confidence            4678999999999995 6665 7889999999999876543221 12222  66777777 78776543211 1  1113


Q ss_pred             ccCcccccccceeEEcCC
Q 037108           78 QLNGKRNLKDLLLEWNNS   95 (239)
Q Consensus        78 ~l~~l~~L~~L~l~~~~~   95 (239)
                      .+.++++|+.|+++.+..
T Consensus       143 ~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             GGGTCSSCCEEEEESSCC
T ss_pred             hHhhCCCCCEEECCCCcC
Confidence            466778888888876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.22  E-value=1.2e-11  Score=106.04  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             cccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108            4 LIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS   63 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~   63 (239)
                      .++|++|++++|. +..+| ..++++++|++|++..+...   .+..++.+++|+ .|++.
T Consensus        33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~l~~l~~L~-~L~Ls   88 (487)
T 3oja_A           33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLR-TLDLN   88 (487)
T ss_dssp             GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCE---EEEECTTCTTCC-EEECC
T ss_pred             CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCC---CCcccccCCCCC-EEEec
Confidence            4589999999994 77765 67999999999987543211   112256666666 66654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=8.3e-11  Score=100.08  Aligned_cols=55  Identities=16%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS   63 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~   63 (239)
                      ++++++|++|++++| .++.+|  ++++++|++|++....-..   + .++++++|+ .+.+.
T Consensus        81 ~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~---l-~~~~l~~L~-~L~l~  135 (457)
T 3bz5_A           81 LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTK---L-DVSQNPLLT-YLNCA  135 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSC---C-CCTTCTTCC-EEECT
T ss_pred             cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCe---e-cCCCCCcCC-EEECC
Confidence            467788888888888 477776  7888888888765432211   1 245555555 55543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=6e-11  Score=105.58  Aligned_cols=51  Identities=24%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             ccEEeeccCccccccccC---CCCcccEEEecccccc---ccccCCCCcccEEEeccc
Q 037108          168 LRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       168 L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c  219 (239)
                      |++|+++++ ++++..|.   .+++|++|+++++.--   +..+..+++|+.|++.++
T Consensus       250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            777777665 34422222   4567777777665421   124566777777777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.21  E-value=7.7e-11  Score=96.00  Aligned_cols=218  Identities=15%  Similarity=0.083  Sum_probs=115.9

Q ss_pred             CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++++|++|++++| .++.+ |..++++++|++|++....-..  ....+.  ++|+ .+++.+..    ........+
T Consensus        74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~-~L~l~~n~----i~~~~~~~~  143 (332)
T 2ft3_A           74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLV-ELRIHDNR----IRKVPKGVF  143 (332)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCC-EEECCSSC----CCCCCSGGG
T ss_pred             hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCC-EEECCCCc----cCccCHhHh
Confidence            467889999999999 47776 6789999999999875432111  011111  3444 55543322    111122335


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh------hhccCcce--e--eeecc
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT------LSITGDSL--F--SRYAR  149 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~------l~l~~~~~--~--L~l~~  149 (239)
                      .++++|+.|+++.+....       .......+... +|+.|++.++....+|..+      +.+.+..-  .  -.+..
T Consensus       144 ~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~  215 (332)
T 2ft3_A          144 SGLRNMNCIEMGGNPLEN-------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR  215 (332)
T ss_dssp             SSCSSCCEEECCSCCCBG-------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred             CCCccCCEEECCCCcccc-------CCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence            566677777776443210       00001112222 4444444443333332211      00000000  0  01122


Q ss_pred             CCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--ccc-ccC------CC
Q 037108          150 MGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LLV-SIL------SL  208 (239)
Q Consensus       150 ~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~~-~~~------~l  208 (239)
                      +++++.+.         .+..++.+++|++|+++++ +++ .+|.   .+++|++|+++++.-  +.. .+.      .+
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  293 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR  293 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence            22332221         0224667899999999987 676 7775   578999999988652  211 121      25


Q ss_pred             CcccEEEecccCcc--ccccccccCccceEee
Q 037108          209 PTLRKLTVNGCKEV--VGRAINLSSSSSVVLW  238 (239)
Q Consensus       209 ~~L~~L~i~~c~~l--~~~~~~~~~l~~L~~~  238 (239)
                      ++|+.+.+.+++-.  ...+..+..+++|+.+
T Consensus       294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred             ccccceEeecCcccccccCcccccccchhhhh
Confidence            78999999998855  4555666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=6.4e-11  Score=91.98  Aligned_cols=176  Identities=15%  Similarity=0.083  Sum_probs=110.7

Q ss_pred             CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++++|++|++++|..++.+|. .++++++|++|++..+..........+..+++|+ .+.+.+..- ...    + .+
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~-~L~l~~n~l-~~l----p-~~  123 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK-FLGIFNTGL-KMF----P-DL  123 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC-EEEEEEECC-CSC----C-CC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC-EEeCCCCCC-ccc----c-cc
Confidence            35789999999999954888886 6899999999988763332222233456677777 888865432 111    1 15


Q ss_pred             Ccccccc---cceeEEc-CCCCCCCCCcchHHHh-hcCCCCCCcc-eEEEeccCCCCccchhhhccCcceeeeeccCCCc
Q 037108           80 NGKRNLK---DLLLEWN-NSTSNIREPETDTCVL-DLLKPHQSLK-KLKINGYGGTKFAIYTLSITGDSLFSRYARMGKW  153 (239)
Q Consensus        80 ~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~-~~l~~~~~L~-~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l  153 (239)
                      ..+++|+   .|+++.+ ...          .+. ..+..+++|+ .+++.++....+|...                  
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~----------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~------------------  175 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMT----------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA------------------  175 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCC----------EECTTTTTTTBSSEEEEECCSCCCCEECTTT------------------
T ss_pred             ccccccccccEEECCCCcchh----------hcCcccccchhcceeEEEcCCCCCcccCHhh------------------
Confidence            5566666   8888855 211          111 2345567899 9999887554444321                  


Q ss_pred             eeeCCCCCCCcCCcccEEeeccCccccccccC----CC-CcccEEEecccccccc-ccCCCCcccEEEecccCcc
Q 037108          154 IPHGSGKSDEGLADLRELFLVSCSKLQRTLLE----YL-PSLETLVIRKCEQLLV-SILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       154 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~----~l-~~L~~L~l~~c~~l~~-~~~~l~~L~~L~i~~c~~l  222 (239)
                              +. .++|++|++++++.++ .+|.    .+ ++|+.|+++++. +.. ....+++|+.|.+.++..|
T Consensus       176 --------~~-~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          176 --------FN-GTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             --------TT-TCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred             --------cC-CCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence                    12 2678888888775565 5542    35 788888887743 322 1225788888888877653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.17  E-value=5e-11  Score=95.46  Aligned_cols=193  Identities=14%  Similarity=0.037  Sum_probs=112.2

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +++.+++.++++++ .++.+|.++.  +++++|++..... .......+.++++|+ .|.+.... +.   ..  .....
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~--~~~~~   75 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLT-QLNLDRAE-LT---KL--QVDGT   75 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCC-SEEEGGGGTTCTTCC-EEECTTSC-CC---EE--ECCSC
T ss_pred             cccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcC-CccCHHHhhcCCCCC-EEECCCCc-cC---cc--cCCCC
Confidence            57888999999998 5899998875  6888887643221 111223466777777 67664322 11   11  11256


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeeeccCCCceeeCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      +++|+.|+++.+...          .++..+..+++|+.|+++++....+|. .+..+..- ..|.+.+. ++... .+.
T Consensus        76 l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N-~l~~~-~~~  142 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGN-ELKTL-PPG  142 (290)
T ss_dssp             CTTCCEEECCSSCCS----------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTS-CCCCC-CTT
T ss_pred             CCcCCEEECCCCcCC----------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCC-CCCcc-Chh
Confidence            778999988865422          233345567789999998887665542 22110000 01222111 11111 022


Q ss_pred             CCCcCCcccEEeeccCccccccccC----CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      .+..+++|+.|+++++ +++ .+|.    .+++|+.|+++++.  .++..+...++|+.+.+.+++
T Consensus       143 ~~~~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANN-NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTTCTTCCEEECTTS-CCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             hcccccCCCEEECCCC-cCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            3456778888888765 565 5543    46778888887654  344455566778888887543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.17  E-value=4.1e-11  Score=103.93  Aligned_cols=189  Identities=16%  Similarity=0.103  Sum_probs=101.6

Q ss_pred             ccCcEEeCCCCCCCcccCccC-CCCccCCccCceEeccCCCCC---hhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            5 IKLHHLNNPSTDSLEEMPQGI-GKLTSLRTMCKFVVGNEIGSG---LRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i-~~L~~L~~L~~~~~~~~~~~~---i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      .+|++|++++| .++.+|..+ +++++|++|++...... +..   ...++.+++|+ .+++.+.. ..... .....+.
T Consensus       310 ~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~l~~L~-~L~Ls~N~-l~~~~-~~~~~~~  384 (549)
T 2z81_A          310 EKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQ-TLVLSQNH-LRSMQ-KTGEILL  384 (549)
T ss_dssp             TTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC-HHHHHHHTCTTSSTTCC-EEECTTSC-CCCHH-HHHHHGG
T ss_pred             ccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc-cccccchhhhhccccCc-EEEccCCc-ccccc-cchhhhh
Confidence            45777777777 477788776 46888888876433211 001   11245566666 66654322 11111 1113356


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSG  159 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~  159 (239)
                      .+++|+.|+++.+...          .+++.+..+++|+.|+++++....+|..+. .+.    .+.+.+. ++.     
T Consensus       385 ~l~~L~~L~Ls~N~l~----------~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~----~L~Ls~N-~l~-----  444 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH----------PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE----VLDVSNN-NLD-----  444 (549)
T ss_dssp             GCTTCCEEECTTCCCC----------CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCS----EEECCSS-CCS-----
T ss_pred             cCCCCCEEECCCCCCc----------cCChhhcccccccEEECCCCCcccccchhcCCce----EEECCCC-Chh-----
Confidence            6677888877754321          233445556778888887776544443210 000    1222221 111     


Q ss_pred             CCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccc--c-ccccCCCCcccEEEecccC
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~  220 (239)
                      ...+.+++|++|+++++ +++ .+|.  .+++|+.|+++++.-  + +..+..+++|++|++++++
T Consensus       445 ~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          445 SFSLFLPRLQELYISRN-KLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCCCCCTTCCEEECCSS-CCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             hhcccCChhcEEECCCC-ccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            11245677777777766 565 5654  467777777776541  1 1235567777777777655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.14  E-value=1.3e-10  Score=101.32  Aligned_cols=190  Identities=15%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             cCcEEeCCCCCCCcccCccC-----CCCccCCccCceEeccCCC-CChhhh----------------------ccccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGI-----GKLTSLRTMCKFVVGNEIG-SGLRQL----------------------KSLIHLQ   57 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i-----~~L~~L~~L~~~~~~~~~~-~~i~~L----------------------~~L~~L~   57 (239)
                      +|++|++++|...+.+|..+     ++|+.|+.++.......-+ ..+..+                      +.+++|+
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~  356 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT  356 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence            78999999985334899887     6666666554332211000 000001                      3444555


Q ss_pred             ceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-ccchhh
Q 037108           58 GTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FAIYTL  136 (239)
Q Consensus        58 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~l  136 (239)
                       .+++.+..    ..+..+..+.++++|+.|+++.+...       .....+..+..+++|+.|+++++.... +|... 
T Consensus       357 -~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-  423 (562)
T 3a79_B          357 -FLNFTQNV----FTDSVFQGCSTLKRLQTLILQRNGLK-------NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-  423 (562)
T ss_dssp             -EEECCSSC----CCTTTTTTCCSCSSCCEEECCSSCCC-------BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-
T ss_pred             -EEECCCCc----cccchhhhhcccCCCCEEECCCCCcC-------CcccchhhhcCCCCCCEEECCCCcCCCccChhh-
Confidence             55543322    22233455667778888887754321       112334456667788888888776544 44321 


Q ss_pred             hccCcceeeeeccCCCceeeCC------CCCCCcC-CcccEEeeccCccccccccC---CCCcccEEEecccc--ccccc
Q 037108          137 SITGDSLFSRYARMGKWIPHGS------GKSDEGL-ADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVS  204 (239)
Q Consensus       137 ~l~~~~~~L~l~~~~~l~~~~~------~~~~~~~-~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~  204 (239)
                                +..+++++.+..      ......+ ++|++|+++++ +++ .+|.   .+++|++|+++++.  .++..
T Consensus       424 ----------~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          424 ----------CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM-SIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             ----------CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             ----------hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence                      112222222210      0111223 69999999987 776 7775   57899999998865  34333


Q ss_pred             -cCCCCcccEEEecccC
Q 037108          205 -ILSLPTLRKLTVNGCK  220 (239)
Q Consensus       205 -~~~l~~L~~L~i~~c~  220 (239)
                       +..+++|+++++++++
T Consensus       492 ~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             STTTCTTCCCEECCSCC
T ss_pred             HHhcCCCCCEEEecCCC
Confidence             6788999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.14  E-value=1.6e-10  Score=93.19  Aligned_cols=201  Identities=16%  Similarity=0.069  Sum_probs=111.9

Q ss_pred             cccCcEEeCCCCCCCcccCccC--CCCccCCccCceEeccCCC-CCh--hhhcccccccceEEEEeccCCCChhHHHHhc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGI--GKLTSLRTMCKFVVGNEIG-SGL--RQLKSLIHLQGTVCISRLENVKEISAAKEAQ   78 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i--~~L~~L~~L~~~~~~~~~~-~~i--~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~   78 (239)
                      +.+|++|++++|...+..|..+  +++++|++|++........ ..+  ..+..+++|+ .|.+.+..-    ....+..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~  164 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLK-VLSIAQAHS----PAFSCEQ  164 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCC-EEEEECCSS----CCCCTTS
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCC-EEEeeCCCc----chhhHHH
Confidence            3569999999996445677777  9999999998865443221 112  2334677777 788765432    2233356


Q ss_pred             cCcccccccceeEEcCCCCCCCCCcchHHHhhc--CCCCCCcceEEEeccCCCCccchhhhc-cCcce--eeeeccCCCc
Q 037108           79 LNGKRNLKDLLLEWNNSTSNIREPETDTCVLDL--LKPHQSLKKLKINGYGGTKFAIYTLSI-TGDSL--FSRYARMGKW  153 (239)
Q Consensus        79 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~p~~~l~l-~~~~~--~L~l~~~~~l  153 (239)
                      +..+++|+.|+++.+..       .....+...  ...+++|+.|++.++....++.....+ .+...  .|.+.+. .+
T Consensus       165 ~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l  236 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SL  236 (310)
T ss_dssp             CCCCTTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CC
T ss_pred             hccCCCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CC
Confidence            67788999999986532       111222222  245678999999988665444321000 00000  0122111 01


Q ss_pred             eeeCCCCCCCcC---CcccEEeeccCccccccccC-CCCcccEEEeccccccc-cccCCCCcccEEEecccC
Q 037108          154 IPHGSGKSDEGL---ADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLL-VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       154 ~~~~~~~~~~~~---~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~-~~~~~l~~L~~L~i~~c~  220 (239)
                      ... .|..++.+   ++|++|+++++ +++ .+|. .+++|++|+++++.--. .....+++|++|++++++
T Consensus       237 ~~~-~p~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          237 RAT-VNPSAPRCMWSSALNSLNLSFA-GLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCC-CCSCCSSCCCCTTCCCEECCSS-CCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             Ccc-chhhHHhccCcCcCCEEECCCC-CCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence            111 02223333   57777777755 565 5554 34677777776654211 234566777777776643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.14  E-value=2e-10  Score=100.97  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCce
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKF   37 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~   37 (239)
                      +++++||+|++++| .++.+|++ +++|++|++|++.
T Consensus        73 ~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           73 FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             hCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEcc
Confidence            45667777777777 46666543 6677777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.14  E-value=3.5e-10  Score=92.90  Aligned_cols=86  Identities=15%  Similarity=0.080  Sum_probs=55.0

Q ss_pred             ccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|++++| .++.+|.+ +++|++|++|++.............+.+++++. .+.......+.   ...+..+..++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~-~~l~~~~N~l~---~l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH-EIRIEKANNLL---YINPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC-EEEEEEETTCC---EECTTSBCCCT
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh-hhhcccCCccc---ccCchhhhhcc
Confidence            57999999999 59999975 799999999988654321111112244555555 44443333322   22334567788


Q ss_pred             ccccceeEEcCC
Q 037108           84 NLKDLLLEWNNS   95 (239)
Q Consensus        84 ~L~~L~l~~~~~   95 (239)
                      +|+.|.++.+..
T Consensus       105 ~L~~L~l~~n~l  116 (350)
T 4ay9_X          105 NLQYLLISNTGI  116 (350)
T ss_dssp             TCCEEEEEEECC
T ss_pred             cccccccccccc
Confidence            899999987653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=2e-10  Score=91.94  Aligned_cols=163  Identities=20%  Similarity=0.247  Sum_probs=98.5

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+|++|++++| .++.+| +++++++|++|++....-   ..+..+.++++|+ .|.+.+.. +..     ...+..+
T Consensus        44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l---~~~~~l~~l~~L~-~L~l~~n~-l~~-----~~~l~~l  111 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL---TDIKPLANLKNLG-WLFLDENK-VKD-----LSSLKDL  111 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCC-----GGGGTTC
T ss_pred             hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCcc---CCCcccccCCCCC-EEECCCCc-CCC-----ChhhccC
Confidence            4678999999999 588887 489999999998754332   2233377777777 77765432 221     1236778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+....           +..+..+++|+.|++.++....++.                            +
T Consensus       112 ~~L~~L~L~~n~i~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~----------------------------l  152 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-----------INGLVHLPQLESLYLGNNKITDITV----------------------------L  152 (291)
T ss_dssp             TTCCEEECTTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG----------------------------G
T ss_pred             CCCCEEECCCCcCCC-----------ChhhcCCCCCCEEEccCCcCCcchh----------------------------h
Confidence            889999888654221           1234556789999998875443321                            2


Q ss_pred             CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c  219 (239)
                      +.+++|++|++++| +++ .++  ..+++|+.|+++++.  .+ ..+..+++|+.|+++++
T Consensus       153 ~~l~~L~~L~L~~N-~l~-~~~~l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          153 SRLTKLDTLSLEDN-QIS-DIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GGCTTCSEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred             ccCCCCCEEEccCC-ccc-cchhhcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence            33555666666554 333 221  145556666665543  22 13445556666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.13  E-value=4e-11  Score=95.13  Aligned_cols=178  Identities=14%  Similarity=0.087  Sum_probs=107.7

Q ss_pred             CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++.+|++|++++| .+..+|. .++++++|++|++....- .......+.++++|+ .+.+.+..    ........+
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~  120 (276)
T 2z62_A           48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQ-KLVAVETN----LASLENFPI  120 (276)
T ss_dssp             TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCC-EEECTTSC----CCCSTTCCC
T ss_pred             hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc-CccChhhhcCCcccc-EEECCCCC----ccccCchhc
Confidence            357899999999999 5788875 689999999998754321 111223456667777 77664332    111222347


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcce---eeeeccCCCcee
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSL---FSRYARMGKWIP  155 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~---~L~l~~~~~l~~  155 (239)
                      ..+++|+.|+++.+....        ..++..+..+++|+.|+++++....++ ..+..+..-..   .+.+.+. .+..
T Consensus       121 ~~l~~L~~L~l~~n~l~~--------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~  191 (276)
T 2z62_A          121 GHLKTLKELNVAHNLIQS--------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNF  191 (276)
T ss_dssp             TTCTTCCEEECCSSCCCC--------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCE
T ss_pred             ccCCCCCEEECcCCccce--------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccc
Confidence            778899999998654321        112344556789999999988765544 22211110000   0111111 1112


Q ss_pred             eCCCCCCCcCCcccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108          156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC  198 (239)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c  198 (239)
                      .  +.......+|++|+++++ +++ .+|.    .+++|+.|++++.
T Consensus       192 ~--~~~~~~~~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          192 I--QPGAFKEIRLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             E--CTTSSCSCCEEEEECCSS-CCS-CCCTTTTTTCCSCCEEECCSS
T ss_pred             c--CccccCCCcccEEECCCC-cee-ecCHhHhcccccccEEEccCC
Confidence            2  223334558999999987 576 5543    5789999999853

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=1.3e-10  Score=102.01  Aligned_cols=164  Identities=19%  Similarity=0.233  Sum_probs=97.0

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      .|.+|++|++++| .+..+| +++++++|++|++..+..   ..+..+.++++|+ .|.+.... +..     ...+..+
T Consensus        41 ~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~L~Ls~N~-l~~-----l~~l~~l  108 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL---TDIKPLTNLKNLG-WLFLDENK-IKD-----LSSLKDL  108 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCC---CCCGGGGGCTTCC-EEECCSSC-CCC-----CTTSTTC
T ss_pred             cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCC---CCChhhccCCCCC-EEECcCCC-CCC-----ChhhccC
Confidence            4778999999998 588887 589999999998754322   2233367777777 77765432 111     1256778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+....           +..+..+++|+.|+++++....++.                            +
T Consensus       109 ~~L~~L~Ls~N~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~l~~----------------------------l  149 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-----------INGLVHLPQLESLYLGNNKITDITV----------------------------L  149 (605)
T ss_dssp             TTCCEEECTTSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------G
T ss_pred             CCCCEEEecCCCCCC-----------CccccCCCccCEEECCCCccCCchh----------------------------h
Confidence            888888888554221           1335556789999988875443321                            2


Q ss_pred             CcCCcccEEeeccCcccccccc-CCCCcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c  219 (239)
                      +.+++|+.|++++| .+.+..| ..+++|+.|++++|.  .+ ..+..+++|+.|++.+|
T Consensus       150 ~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          150 SRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred             cccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence            23555555555544 3332212 134555555555543  12 23445555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.12  E-value=4.9e-10  Score=98.63  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             CCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          165 LADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      +++|++|+++++ +++ .+|..+++|++|+++++ .+...-..+++|+.|++++| ++..+|..+.++++|+.
T Consensus       220 ~~~L~~L~Ls~N-~L~-~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~  288 (622)
T 3g06_A          220 PSGLKELIVSGN-RLT-SLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETT  288 (622)
T ss_dssp             CTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred             CCCCCEEEccCC-ccC-cCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence            356666666654 554 45555666666666654 23221124556666666665 34444544555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.11  E-value=2.4e-10  Score=93.86  Aligned_cols=203  Identities=13%  Similarity=0.113  Sum_probs=119.0

Q ss_pred             CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      ++++++|++|++++| .++.+|.+ ++++++|++|++....-........++++++|+ .+++.+.....   ...+..+
T Consensus        96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~-~L~l~~n~~~~---~~~~~~~  170 (353)
T 2z80_A           96 FSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ-ILRVGNMDTFT---KIQRKDF  170 (353)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCC---EECTTTT
T ss_pred             cCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc-EEECCCCcccc---ccCHHHc
Confidence            457899999999999 58899977 899999999987543322111112466777788 88887653222   2223456


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhh-ccCcceeeeeccCCCceeeCC
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLS-ITGDSLFSRYARMGKWIPHGS  158 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~-l~~~~~~L~l~~~~~l~~~~~  158 (239)
                      .++++|+.|+++.+....         ..+..+..+++|+.|++.++....+|..+.. ... -..+.+.+. .+.....
T Consensus       171 ~~l~~L~~L~l~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~L~~n-~l~~~~~  239 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQS---------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELRDT-DLDTFHF  239 (353)
T ss_dssp             TTCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTT-EEEEEEESC-BCTTCCC
T ss_pred             cCCCCCCEEECCCCCcCc---------cCHHHHhccccCCeecCCCCccccchhhhhhhccc-ccEEECCCC-ccccccc
Confidence            778899999999765321         1234556678899999988876555543211 000 001222111 0000000


Q ss_pred             --CCCCCcCCcccEEeeccCccccc----cccC---CCCcccEEEecccc--ccccc-cCCCCcccEEEecccC
Q 037108          159 --GKSDEGLADLRELFLVSCSKLQR----TLLE---YLPSLETLVIRKCE--QLLVS-ILSLPTLRKLTVNGCK  220 (239)
Q Consensus       159 --~~~~~~~~~L~~L~l~~~~~L~~----~~p~---~l~~L~~L~l~~c~--~l~~~-~~~l~~L~~L~i~~c~  220 (239)
                        .......+.++.+++.++ .+.+    .+|.   .+++|++|+++++.  .++.. +..+++|++|++++++
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             C------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence              001123455666666654 3321    2332   57888888888765  33333 3677888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.09  E-value=5.6e-10  Score=87.33  Aligned_cols=168  Identities=20%  Similarity=0.204  Sum_probs=90.7

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      ..++++++++ .++.+|.++.  .++++|++....- .......++++++|+ .|.+.+..    .....+..+..+++|
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L   85 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGL-ATLSDATFRGLTKLT-WLNLDYNQ----LQTLSAGVFDDLTEL   85 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCC-CCCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTTCTTC
T ss_pred             CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCc-CccCHhHhcCcccCC-EEECCCCc----CCccCHhHhccCCcC
Confidence            4677888887 5788887776  5777776643221 112223455666666 66654322    122223445667778


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL  165 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~  165 (239)
                      +.|+++.+.....         ....+..+++|+.|++.++....+|..                          .++.+
T Consensus        86 ~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~l  130 (251)
T 3m19_A           86 GTLGLANNQLASL---------PLGVFDHLTQLDKLYLGGNQLKSLPSG--------------------------VFDRL  130 (251)
T ss_dssp             CEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------TTTTC
T ss_pred             CEEECCCCccccc---------ChhHhcccCCCCEEEcCCCcCCCcChh--------------------------HhccC
Confidence            8888775432210         112334567888888877754443321                          12345


Q ss_pred             CcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEeccc
Q 037108          166 ADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGC  219 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c  219 (239)
                      ++|++|+++++ +++ .+|.    .+++|+.|+++++.  .+. ..+..+++|++|++.++
T Consensus       131 ~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          131 TKLKELRLNTN-QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CcccEEECcCC-cCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            66666666654 444 3322    34566666665543  111 13445566666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=6.3e-11  Score=100.75  Aligned_cols=36  Identities=19%  Similarity=0.110  Sum_probs=8.4

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEe
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVV   39 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~   39 (239)
                      +..+||+|+++++. ++++|++|++|++|++|++..+
T Consensus         9 ~~~~L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n   44 (454)
T 1jl5_A            9 SNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWS   44 (454)
T ss_dssp             --------------------------CCHHHHHHHHH
T ss_pred             ccccchhhhcccCc-hhhCChhHhcccchhhhhccCC
Confidence            35788999999984 7899999999999999876543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=2.6e-10  Score=92.04  Aligned_cols=181  Identities=14%  Similarity=0.007  Sum_probs=103.1

Q ss_pred             CCcccCcEEeCCCCCCCcc-cC----ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHH-
Q 037108            2 GNLIKLHHLNNPSTDSLEE-MP----QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAK-   75 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~-lP----~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~-   75 (239)
                      +++.+|++|++++|. +.. .|    ..++.+++|++|++....- .......++.+++|+ .|++.+..-. ...... 
T Consensus       114 ~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~Ls~N~l~-~~~~~~~  189 (310)
T 4glp_A          114 ATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALT-SLDLSDNPGL-GERGLMA  189 (310)
T ss_dssp             CCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCC-EEECCSCTTC-HHHHHHT
T ss_pred             ccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCC-EEECCCCCCc-cchhhhH
Confidence            568899999999985 553 33    3456788999998755432 222334566777777 7776543311 011111 


Q ss_pred             HhccCcccccccceeEEcCCCCCCCCCcchHHHhhc-CCCCCCcceEEEeccCCCCc-cchhhhccCcce--eeeeccCC
Q 037108           76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDL-LKPHQSLKKLKINGYGGTKF-AIYTLSITGDSL--FSRYARMG  151 (239)
Q Consensus        76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~~--~L~l~~~~  151 (239)
                      ...+..+++|+.|.++.+...       ........ +..+++|+.|+++++..... |..+....+...  .|.+.+. 
T Consensus       190 ~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-  261 (310)
T 4glp_A          190 ALCPHKFPAIQNLALRNTGME-------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-  261 (310)
T ss_dssp             TSCTTSSCCCCSCBCCSSCCC-------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred             HHhhhcCCCCCEEECCCCCCC-------chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-
Confidence            122357788999998865421       11122112 23457899999988765554 433211110000  1222211 


Q ss_pred             CceeeCCCCCCCcCCcccEEeeccCccccc-cccCCCCcccEEEecccc
Q 037108          152 KWIPHGSGKSDEGLADLRELFLVSCSKLQR-TLLEYLPSLETLVIRKCE  199 (239)
Q Consensus       152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~-~~p~~l~~L~~L~l~~c~  199 (239)
                      .+..  .|.  +.+++|++|+++++ ++++ ..+..+++|+.|++++.+
T Consensus       262 ~l~~--lp~--~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          262 GLEQ--VPK--GLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCS--CCS--CCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCCc--hhh--hhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            1111  122  23589999999977 6763 234578999999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.06  E-value=6e-10  Score=99.10  Aligned_cols=183  Identities=11%  Similarity=0.003  Sum_probs=89.7

Q ss_pred             CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCC
Q 037108           22 PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIRE  101 (239)
Q Consensus        22 P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  101 (239)
                      |..++++++|++|++.............++.+++|+ .+.+....    ........+..+++|+.|.+..+...     
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~~~~L~~L~l~~n~l~-----  467 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF-EIYLSYNK----YLQLTRNSFALVPSLQRLMLRRVALK-----  467 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC-EEECCSCS----EEECCTTTTTTCTTCCEEECTTSCCB-----
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCccccc-EEecCCCC----cceeChhhhhcCcccccchhcccccc-----
Confidence            345556666666654322111001112344444444 44443221    11111223444556666665533210     


Q ss_pred             CcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeC---CC----CCCCcCCcccEEee
Q 037108          102 PETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHG---SG----KSDEGLADLRELFL  173 (239)
Q Consensus       102 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~---~~----~~~~~~~~L~~L~l  173 (239)
                        .....+..+..+++|+.|++.++....+|.. +..+..- ..+.+.+. .+..+.   .+    ..++.+++|++|++
T Consensus       468 --~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          468 --NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             --CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred             --ccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEEC
Confidence              0112234455667788888877765554432 2110000 01222221 011110   01    12567889999999


Q ss_pred             ccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108          174 VSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       174 ~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~  220 (239)
                      +++ +++ .+|.    .+++|+.|+++++.  .++. .+..+++|++|+++++.
T Consensus       544 ~~N-~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          544 ESN-GFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCC-CCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence            876 665 6653    56888889887654  2322 34678899999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=9.5e-10  Score=87.99  Aligned_cols=171  Identities=16%  Similarity=0.004  Sum_probs=102.4

Q ss_pred             ccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|++++|. ++.++ ..++++++|++|++....-   ..+...+.+++|+ .|++.+..- .    ..+..+..++
T Consensus        31 ~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~Ls~N~l-~----~l~~~~~~l~  100 (290)
T 1p9a_G           31 KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLG-TLDLSHNQL-Q----SLPLLGQTLP  100 (290)
T ss_dssp             TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCC---CEEECCSCCTTCC-EEECCSSCC-S----SCCCCTTTCT
T ss_pred             CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCcc---CcccCCCCCCcCC-EEECCCCcC-C----cCchhhccCC
Confidence            578999999994 67764 6789999999997743221   1222235566666 676654321 1    2234566778


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh-hhccCcceeeeeccCCCceeeCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT-LSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.++....+|... ..+..- ..|.+.+. ++..+. +..+
T Consensus       101 ~L~~L~l~~N~l~~l---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N-~l~~l~-~~~~  168 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSL---------PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANN-NLTELP-AGLL  168 (290)
T ss_dssp             TCCEEECCSSCCCCC---------CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTS-CCSCCC-TTTT
T ss_pred             CCCEEECCCCcCccc---------CHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-CEEECCCC-cCCccC-HHHh
Confidence            899998886543211         1133556678999999888766655422 100000 01222211 111111 2234


Q ss_pred             CcCCcccEEeeccCccccccccC---CCCcccEEEecccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE  199 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~  199 (239)
                      ..+++|++|+++++ +++ .+|.   ..++|+.+.+.+.+
T Consensus       169 ~~l~~L~~L~L~~N-~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          169 NGLENLDTLLLQEN-SLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTCTTCCEEECCSS-CCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCcCCCCEEECCCC-cCC-ccChhhcccccCCeEEeCCCC
Confidence            67899999999976 676 7775   45789999998644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.05  E-value=1.8e-11  Score=101.86  Aligned_cols=89  Identities=13%  Similarity=-0.009  Sum_probs=45.1

Q ss_pred             CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccC--CCCChhh-------hcccccccceEEEEeccCC
Q 037108            3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNE--IGSGLRQ-------LKSLIHLQGTVCISRLENV   68 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~--~~~~i~~-------L~~L~~L~~~L~~~~~~~~   68 (239)
                      .+++|++|++++|. ++.     ++..+.++++|++|++..+...  .+..+..       +.++++|+ .|.+.+..-.
T Consensus        30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFG  107 (386)
T ss_dssp             HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC-EEECCSCCCC
T ss_pred             cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc-EEECCCCcCC
Confidence            35667777777773 443     3445667777777766443211  1111111       24556666 6665443211


Q ss_pred             CChhHHHHhccCcccccccceeEEc
Q 037108           69 KEISAAKEAQLNGKRNLKDLLLEWN   93 (239)
Q Consensus        69 ~~~~~~~~~~l~~l~~L~~L~l~~~   93 (239)
                      .......+..+..+++|+.|+++.+
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCC
Confidence            1111123344555667777777644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.03  E-value=2.3e-10  Score=97.22  Aligned_cols=201  Identities=15%  Similarity=0.040  Sum_probs=98.9

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEecc-------CCCCChhhhcc-cccccceEEEEeccCCCChh
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGN-------EIGSGLRQLKS-LIHLQGTVCISRLENVKEIS   72 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~-------~~~~~i~~L~~-L~~L~~~L~~~~~~~~~~~~   72 (239)
                      |++|++|++|++++|...+.+|.+++++++|+++++..+..       ..+..+..+.. .++|+ .+++.+.. ..   
T Consensus        30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~-~L~l~~n~-l~---  104 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE-SLVASCNS-LT---  104 (454)
T ss_dssp             ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCS-EEECCSSC-CS---
T ss_pred             HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCC-EEEccCCc-CC---
Confidence            57899999999999965558999999999885543322110       01111111111 13444 55543221 11   


Q ss_pred             HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCC-CCCcceEEEeccCCCCccchhhhccCcceeeeeccCC
Q 037108           73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKP-HQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMG  151 (239)
Q Consensus        73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~  151 (239)
                      . .+.   ..++|+.|+++.+...              .+.. +++|+.|++.++....+|+ +..+..- ..+.+.+. 
T Consensus       105 ~-lp~---~~~~L~~L~l~~n~l~--------------~l~~~~~~L~~L~L~~n~l~~lp~-~~~l~~L-~~L~l~~N-  163 (454)
T 1jl5_A          105 E-LPE---LPQSLKSLLVDNNNLK--------------ALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFL-KIIDVDNN-  163 (454)
T ss_dssp             S-CCC---CCTTCCEEECCSSCCS--------------CCCSCCTTCCEEECCSSCCSSCCC-CTTCTTC-CEEECCSS-
T ss_pred             c-ccc---ccCCCcEEECCCCccC--------------cccCCCCCCCEEECcCCCCCCCcc-cCCCCCC-CEEECCCC-
Confidence            1 111   1256777777644321              1111 2578888888776555553 1110000 01222111 


Q ss_pred             CceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccccccccCCCCcccEEEecccCccccccccc
Q 037108          152 KWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINL  229 (239)
Q Consensus       152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~  229 (239)
                      .+..+  +   ..+++|++|+++++ +++ .+|.  .+++|++|++.++. +...-...++|++|++++|. +...+ .+
T Consensus       164 ~l~~l--p---~~~~~L~~L~L~~n-~l~-~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~-l~~lp-~~  233 (454)
T 1jl5_A          164 SLKKL--P---DLPPSLEFIAAGNN-QLE-ELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI-LEELP-EL  233 (454)
T ss_dssp             CCSCC--C---CCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC-CSSCC-CC
T ss_pred             cCccc--C---CCcccccEEECcCC-cCC-cCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCc-CCccc-cc
Confidence            01110  1   12457777777766 555 4553  56777777777654 21211223578888888873 33444 24


Q ss_pred             cCccceEe
Q 037108          230 SSSSSVVL  237 (239)
Q Consensus       230 ~~l~~L~~  237 (239)
                      ..+++|+.
T Consensus       234 ~~l~~L~~  241 (454)
T 1jl5_A          234 QNLPFLTT  241 (454)
T ss_dssp             TTCTTCCE
T ss_pred             CCCCCCCE
Confidence            45555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.03  E-value=7.5e-11  Score=95.54  Aligned_cols=189  Identities=16%  Similarity=0.018  Sum_probs=98.9

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +++++|++|++++| .+..+|+ ++++++|++|++...      .+.++...++|+ .+.+.+..-    ...   ....
T Consensus        55 ~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n------~l~~l~~~~~L~-~L~l~~n~l----~~~---~~~~  118 (317)
T 3o53_A           55 APFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN------YVQELLVGPSIE-TLHAANNNI----SRV---SCSR  118 (317)
T ss_dssp             TTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSS------EEEEEEECTTCC-EEECCSSCC----SEE---EECC
T ss_pred             hCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCC------ccccccCCCCcC-EEECCCCcc----CCc---Cccc
Confidence            57899999999999 4777775 999999999987432      334444445555 555533221    111   1122


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhh-hccCcceeeeeccCCCceeeCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTL-SITGDSLFSRYARMGKWIPHGSG  159 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l-~l~~~~~~L~l~~~~~l~~~~~~  159 (239)
                      +++|+.|+++.+....         .....+..+++|+.|+++++.....+ ..+. .+.. -..|.+.+. .+..+   
T Consensus       119 ~~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~~L~L~~N-~l~~~---  184 (317)
T 3o53_A          119 GQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYN-FIYDV---  184 (317)
T ss_dssp             CSSCEEEECCSSCCCS---------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTS-CCCEE---
T ss_pred             cCCCCEEECCCCCCCC---------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-CCEEECCCC-cCccc---
Confidence            4567777766443211         01112333467777777766544322 2110 0000 001222211 11111   


Q ss_pred             CCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccCcc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l  222 (239)
                      +....+++|++|+++++ +++ .+|.   .+++|+.|+++++.  .++..+..+++|+.|++++++-.
T Consensus       185 ~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccccccccCCEEECCCC-cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            11223677777777765 454 3332   45677777776654  23334556677777777765543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=1.1e-11  Score=103.01  Aligned_cols=210  Identities=16%  Similarity=0.085  Sum_probs=109.3

Q ss_pred             CCCcccCcEEeCCCCCCCc----ccCccC-------CCCccCCccCceEeccCCC---CChhhhcccccccceEEEEecc
Q 037108            1 MGNLIKLHHLNNPSTDSLE----EMPQGI-------GKLTSLRTMCKFVVGNEIG---SGLRQLKSLIHLQGTVCISRLE   66 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~----~lP~~i-------~~L~~L~~L~~~~~~~~~~---~~i~~L~~L~~L~~~L~~~~~~   66 (239)
                      +.++++|++|++++|. +.    .+|.++       .++++|++|++..+.....   .....+.++++|+ .|.+.+..
T Consensus        56 l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~  133 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE-HLYLHNNG  133 (386)
T ss_dssp             TTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCC-EEECCSSC
T ss_pred             HHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCC-EEECcCCC
Confidence            3578999999999973 33    456555       7899999998765432211   1123467777777 77765433


Q ss_pred             CCCChhHHHHhccCcc---------cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC------c
Q 037108           67 NVKEISAAKEAQLNGK---------RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK------F  131 (239)
Q Consensus        67 ~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~  131 (239)
                      -...........+..+         ++|+.|.++.+...     ......+...+...++|+.|.+.++....      .
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~  208 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-----NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL  208 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-----GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-----cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH
Confidence            1000011122223334         78999998865421     11223333455556799999998875431      1


Q ss_pred             cchhhhccCcceeeeeccCCCcee---eCCCCCCCcCCcccEEeeccCcccccc----ccC-----CCCcccEEEecccc
Q 037108          132 AIYTLSITGDSLFSRYARMGKWIP---HGSGKSDEGLADLRELFLVSCSKLQRT----LLE-----YLPSLETLVIRKCE  199 (239)
Q Consensus       132 p~~~l~l~~~~~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L~l~~~~~L~~~----~p~-----~l~~L~~L~l~~c~  199 (239)
                      |.++.....- ..|.+.+.. +..   ...+..+..+++|++|++++|. +.+.    +|.     .+++|++|++++|.
T Consensus       209 ~~~l~~~~~L-~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          209 LEGLAYCQEL-KVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HTTGGGCTTC-CEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHhhcCCCc-cEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            1111000000 001221110 000   0001123456777777777663 4322    222     26777777777665


Q ss_pred             c-------ccccc-CCCCcccEEEecccC
Q 037108          200 Q-------LLVSI-LSLPTLRKLTVNGCK  220 (239)
Q Consensus       200 ~-------l~~~~-~~l~~L~~L~i~~c~  220 (239)
                      -       ++..+ ..+++|++|++++|+
T Consensus       286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          286 IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            2       22233 346777777777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=1.8e-09  Score=88.67  Aligned_cols=199  Identities=15%  Similarity=0.069  Sum_probs=114.8

Q ss_pred             CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      +++|++|++|++++|...+.+|.+ +.+|++++++...............++.+++|+ .+.+.+..-.. ..   ....
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~-~L~l~~n~l~~-~~---~~~~  124 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ-YLLISNTGIKH-LP---DVHK  124 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC-EEEEEEECCSS-CC---CCTT
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc-ccccccccccc-CC---chhh
Confidence            357899999999999544667754 688888887644433332222234467777787 78876543211 11   1112


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHh-hcCCC-CCCcceEEEeccCCCCccchhhhccCcce-eeeeccCCCceee
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVL-DLLKP-HQSLKKLKINGYGGTKFAIYTLSITGDSL-FSRYARMGKWIPH  156 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~-~~~L~~L~l~~~~~~~~p~~~l~l~~~~~-~L~l~~~~~l~~~  156 (239)
                      ....++..+.+..+...         ..+. ..+.. ...++.|++.++....+|.....  +..- .+.+.+...+..+
T Consensus       125 ~~~~~l~~l~l~~~~~i---------~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINI---------HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             CCBSSCEEEEEESCTTC---------CEECTTSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCC
T ss_pred             cccchhhhhhhcccccc---------ccccccchhhcchhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCC
Confidence            22234445555422111         0011 11122 24678888888766555543200  0000 1233333333333


Q ss_pred             CCCCCCCcCCcccEEeeccCccccccccC-CCCcccEEEecccccccc--ccCCCCcccEEEecc
Q 037108          157 GSGKSDEGLADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLLV--SILSLPTLRKLTVNG  218 (239)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~~--~~~~l~~L~~L~i~~  218 (239)
                      . +..++.+++|++|+++++ +++ .+|. .|.+|+.|++.++.+++.  .+..+++|+.+++.+
T Consensus       194 ~-~~~f~~l~~L~~LdLs~N-~l~-~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          194 P-NDVFHGASGPVILDISRT-RIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             C-TTTTTTEECCSEEECTTS-CCC-CCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             C-HHHhccCcccchhhcCCC-CcC-ccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            1 234577899999999976 787 7765 688999999988887743  456788888888864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.02  E-value=8.5e-11  Score=100.82  Aligned_cols=190  Identities=16%  Similarity=0.005  Sum_probs=110.0

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ++++++|++|++++|. +..+|+ ++++++|++|++..+      .+..+...++|+ .|.+.+..- .   ...   ..
T Consensus        54 ~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N------~l~~l~~~~~L~-~L~L~~N~l-~---~~~---~~  117 (487)
T 3oja_A           54 LAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN------YVQELLVGPSIE-TLHAANNNI-S---RVS---CS  117 (487)
T ss_dssp             GTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS------EEEEEEECTTCC-EEECCSSCC-C---CEE---EC
T ss_pred             HhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC------cCCCCCCCCCcC-EEECcCCcC-C---CCC---cc
Confidence            3678999999999994 776665 999999999987432      334444445666 666543221 1   111   12


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhh-hccCcceeeeeccCCCceeeCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTL-SITGDSLFSRYARMGKWIPHGS  158 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l-~l~~~~~~L~l~~~~~l~~~~~  158 (239)
                      .+++|+.|+++.+....         .....+..+++|+.|+++++..... |..+. .+..- ..|.+.+.. +...  
T Consensus       118 ~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~-l~~~--  184 (487)
T 3oja_A          118 RGQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF-IYDV--  184 (487)
T ss_dssp             CCSSCEEEECCSSCCCS---------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC-CCEE--
T ss_pred             ccCCCCEEECCCCCCCC---------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc-cccc--
Confidence            34667777777554221         1122334456788888877654432 32221 00000 012222211 1111  


Q ss_pred             CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccCcc
Q 037108          159 GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEV  222 (239)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l  222 (239)
                       +....+++|++|+++++ .+. .+|.   .+++|+.|+++++.  .++..+..+++|+.|++.+++-.
T Consensus       185 -~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 -KGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -ECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             -cccccCCCCCEEECCCC-CCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence             12334788888888876 565 3432   56788888888765  34445667788888888887644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.00  E-value=1.7e-09  Score=86.60  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=100.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +.+++|++|++++| .++.+|. ++++++|++|++....-   ..+..++++++|+ .|++.+.. +...     ..+..
T Consensus        65 ~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~L~~n~-i~~~-----~~l~~  132 (291)
T 1h6t_A           65 QYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV---KDLSSLKDLKKLK-SLSLEHNG-ISDI-----NGLVH  132 (291)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCGGGGTTCTTCC-EEECTTSC-CCCC-----GGGGG
T ss_pred             hcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC---CCChhhccCCCCC-EEECCCCc-CCCC-----hhhcC
Confidence            56889999999999 5888987 99999999998754332   3456677888888 77775432 2211     34667


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +++|+.|+++.+....           +..+..+++|+.|+++++.....+.                            
T Consensus       133 l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~~----------------------------  173 (291)
T 1h6t_A          133 LPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQISDIVP----------------------------  173 (291)
T ss_dssp             CTTCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------
T ss_pred             CCCCCEEEccCCcCCc-----------chhhccCCCCCEEEccCCccccchh----------------------------
Confidence            7899999998664321           1345567899999999875443332                            


Q ss_pred             CCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE  199 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~  199 (239)
                      +..+++|++|+++++ .++ .+|.  .+++|+.|++++++
T Consensus       174 l~~l~~L~~L~L~~N-~i~-~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred             hcCCCccCEEECCCC-cCC-CChhhccCCCCCEEECcCCc
Confidence            245778888888766 454 4442  57788888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.97  E-value=1.9e-09  Score=94.66  Aligned_cols=146  Identities=21%  Similarity=0.235  Sum_probs=100.3

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ++++.+|++|++++| .+..+|+ ++++++|++|++..+.-   ..+..+..+++|+ .|.+.... +...     ..+.
T Consensus        61 l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l---~~l~~l~~l~~L~-~L~Ls~N~-l~~l-----~~l~  128 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKI---KDLSSLKDLKKLK-SLSLEHNG-ISDI-----NGLV  128 (605)
T ss_dssp             GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCC---CCCTTSTTCTTCC-EEECTTSC-CCCC-----GGGG
T ss_pred             HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCC---CCChhhccCCCCC-EEEecCCC-CCCC-----cccc
Confidence            357899999999999 5888887 99999999998755432   2344677777777 77765433 1111     3467


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      .+++|+.|.++.+....           +..+..+++|+.|+++++.....+.                           
T Consensus       129 ~l~~L~~L~Ls~N~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~~~~---------------------------  170 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQISDIVP---------------------------  170 (605)
T ss_dssp             GCTTCSEEECCSSCCCC-----------CGGGGSCTTCSEEECCSSCCCCCGG---------------------------
T ss_pred             CCCccCEEECCCCccCC-----------chhhcccCCCCEEECcCCcCCCchh---------------------------
Confidence            78899999998664321           1345667899999999875443322                           


Q ss_pred             CCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE  199 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~  199 (239)
                       +..+++|+.|++++| .+. .+|.  .+++|+.|++.+|+
T Consensus       171 -l~~l~~L~~L~Ls~N-~i~-~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEECCSEE
T ss_pred             -hccCCCCCEEECcCC-CCC-CChHHccCCCCCEEEccCCc
Confidence             245777777887766 454 3442  56777777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.94  E-value=3.6e-09  Score=82.71  Aligned_cols=151  Identities=19%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|+++++. +..++. .++++++|++|++....- .......+.++++|+ .|.+.+..    ........+..++
T Consensus        35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELG-TLGLANNQ----LASLPLGVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTTCT
T ss_pred             CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCC-EEECCCCc----ccccChhHhcccC
Confidence            469999999994 777764 689999999998754322 122223366677777 77764432    2222334567788


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.++....+|.                          ..++
T Consensus       108 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~  152 (251)
T 3m19_A          108 QLDKLYLGGNQLKSL---------PSGVFDRLTKLKELRLNTNQLQSIPA--------------------------GAFD  152 (251)
T ss_dssp             TCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTT
T ss_pred             CCCEEEcCCCcCCCc---------ChhHhccCCcccEEECcCCcCCccCH--------------------------HHcC
Confidence            999999986643211         01224557899999999876544432                          2345


Q ss_pred             cCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108          164 GLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE  199 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~  199 (239)
                      .+++|++|+++++ +++ .+|.    .+++|+.|++.+++
T Consensus       153 ~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          153 KLTNLQTLSLSTN-QLQ-SVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCcCCCEEECCCC-cCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence            6889999999876 565 4432    57889999988654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.90  E-value=4.6e-08  Score=86.15  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             CCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          165 LADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      +++|+.|++.++ .++ .+|..+++|++|+++++ .+...-..+++|++|++++| ++..++..+.+++.|.+
T Consensus       200 ~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~L  268 (622)
T 3g06_A          200 PSELYKLWAYNN-RLT-SLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSV  268 (622)
T ss_dssp             CTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEEC
T ss_pred             cchhhEEECcCC-ccc-ccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeC
Confidence            345555555544 343 45545566666666654 23222245567777777776 45555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=2.2e-10  Score=94.52  Aligned_cols=227  Identities=13%  Similarity=0.032  Sum_probs=116.2

Q ss_pred             CcccCcEEeCCCCCCCcccC-----ccCCCCc-cCCccCceEeccCCCCChhhhccc-----ccccceEEEEeccCCCCh
Q 037108            3 NLIKLHHLNNPSTDSLEEMP-----QGIGKLT-SLRTMCKFVVGNEIGSGLRQLKSL-----IHLQGTVCISRLENVKEI   71 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP-----~~i~~L~-~L~~L~~~~~~~~~~~~i~~L~~L-----~~L~~~L~~~~~~~~~~~   71 (239)
                      ...+|++|++++|. ++..+     ..+.++. +|++|++..+.- .......+..+     ++|+ .|++.+..-....
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~-~L~Ls~n~l~~~~   96 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVT-SLNLSGNFLSYKS   96 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCC-EEECCSSCGGGSC
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCcc-EEECcCCcCChHH
Confidence            34569999999994 78777     5677888 899998755432 22233334443     6677 7776544311111


Q ss_pred             hHHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCC-CCCcceEEEeccCCCC-----ccchhhhccCccee
Q 037108           72 SAAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKP-HQSLKKLKINGYGGTK-----FAIYTLSITGDSLF  144 (239)
Q Consensus        72 ~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~-----~p~~~l~l~~~~~~  144 (239)
                      .......+... ++|+.|+++++...     ......+...+.. ..+|+.|+++++....     ++.++......-..
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFS-----SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGG-----GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCC-----cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            12222234444 68888888866421     1122333334444 3588888888765331     11111000000001


Q ss_pred             eeeccCCCceeeCC---CCCCCcC-CcccEEeeccCccccc----cccC----CCCcccEEEeccccc-------ccccc
Q 037108          145 SRYARMGKWIPHGS---GKSDEGL-ADLRELFLVSCSKLQR----TLLE----YLPSLETLVIRKCEQ-------LLVSI  205 (239)
Q Consensus       145 L~l~~~~~l~~~~~---~~~~~~~-~~L~~L~l~~~~~L~~----~~p~----~l~~L~~L~l~~c~~-------l~~~~  205 (239)
                      |.+.++ .+.....   ......+ ++|++|+++++ .+.+    .++.    ..++|++|+++++.-       +...+
T Consensus       172 L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          172 LNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             EECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             eeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence            222221 0100000   0011123 47888888866 4542    1332    135788888877641       11234


Q ss_pred             CCCCcccEEEecccC-------ccccccccccCccceEeeC
Q 037108          206 LSLPTLRKLTVNGCK-------EVVGRAINLSSSSSVVLWD  239 (239)
Q Consensus       206 ~~l~~L~~L~i~~c~-------~l~~~~~~~~~l~~L~~~~  239 (239)
                      ..+++|++|++++|.       .+...+..+..+++|+.+|
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld  290 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD  290 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence            567778888888775       1334444556666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.88  E-value=7.6e-09  Score=77.85  Aligned_cols=15  Identities=27%  Similarity=0.476  Sum_probs=8.1

Q ss_pred             CCCCCCcceEEEecc
Q 037108          112 LKPHQSLKKLKINGY  126 (239)
Q Consensus       112 l~~~~~L~~L~l~~~  126 (239)
                      +..+++|+.|++.++
T Consensus        84 l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           84 ISGLSNLERLRIMGK   98 (197)
T ss_dssp             GTTCTTCCEEEEECT
T ss_pred             hhcCCCCCEEEeECC
Confidence            334455666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.87  E-value=1.3e-09  Score=85.86  Aligned_cols=143  Identities=19%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ++.+|++|++++| .++.+| +++++++|++|++....-   ..+..++++++|+ .|.+.+..- ....     .+.. 
T Consensus        39 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i---~~~~~l~~l~~L~-~L~L~~N~l-~~l~-----~~~~-  105 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQI---SDLSPLKDLTKLE-ELSVNRNRL-KNLN-----GIPS-  105 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCSSCC-EEECCSSCC-SCCT-----TCCC-
T ss_pred             hcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCcc---CCChhhccCCCCC-EEECCCCcc-CCcC-----cccc-
Confidence            3566777777776 466666 566677777766543221   1122245555555 555433211 1110     1111 


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+....           ++.+..+++|+.|+++++....++                            .+
T Consensus       106 ~~L~~L~L~~N~l~~-----------~~~l~~l~~L~~L~Ls~N~i~~~~----------------------------~l  146 (263)
T 1xeu_A          106 ACLSRLFLDNNELRD-----------TDSLIHLKNLEILSIRNNKLKSIV----------------------------ML  146 (263)
T ss_dssp             SSCCEEECCSSCCSB-----------SGGGTTCTTCCEEECTTSCCCBCG----------------------------GG
T ss_pred             CcccEEEccCCccCC-----------ChhhcCcccccEEECCCCcCCCCh----------------------------HH
Confidence            456666655432110           123444556666666555332221                            12


Q ss_pred             CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc
Q 037108          163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE  199 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~  199 (239)
                      +.+++|++|+++++ .+. .++  ..+++|+.|++++++
T Consensus       147 ~~l~~L~~L~L~~N-~i~-~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          147 GFLSKLEVLDLHGN-EIT-NTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GGCTTCCEEECTTS-CCC-BCTTSTTCCCCCEEEEEEEE
T ss_pred             ccCCCCCEEECCCC-cCc-chHHhccCCCCCEEeCCCCc
Confidence            34667777777765 443 222  146677777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.85  E-value=1.5e-09  Score=94.93  Aligned_cols=54  Identities=26%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             CCcccEEeeccCccccc-c---ccCCCCcccEEEeccccccc-----cccCCCCcccEEEecccC
Q 037108          165 LADLRELFLVSCSKLQR-T---LLEYLPSLETLVIRKCEQLL-----VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~-~---~p~~l~~L~~L~l~~c~~l~-----~~~~~l~~L~~L~i~~c~  220 (239)
                      +++|++|++++| .+.+ .   +...+++|++|++++|+ +.     .....+++|++|++++|.
T Consensus       462 ~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            455666666544 2321 1   11245666666666665 22     122356666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=2.4e-11  Score=105.95  Aligned_cols=177  Identities=15%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEecc------------CCCCChhhhcccccccceEEEEeccCCC
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGN------------EIGSGLRQLKSLIHLQGTVCISRLENVK   69 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~------------~~~~~i~~L~~L~~L~~~L~~~~~~~~~   69 (239)
                      ...++|+.|+++++ .++.+|++|+++++|+.|++.....            ..+.....++++++|+ .++........
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~-~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHHHHH
T ss_pred             ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcc-cCcchhhcccc
Confidence            45788999999999 5899999999999999998522110            0111112233344333 22210000000


Q ss_pred             ChhH--HHHhccCc--ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceee
Q 037108           70 EISA--AKEAQLNG--KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFS  145 (239)
Q Consensus        70 ~~~~--~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L  145 (239)
                      ....  .....+..  ...|+.|+++.+....          ++ .+..+++|+.|+++++....+|.            
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~----------lp-~~~~l~~L~~L~Ls~N~l~~lp~------------  480 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----------LC-HLEQLLLVTHLDLSHNRLRALPP------------  480 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS----------CC-CGGGGTTCCEEECCSSCCCCCCG------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC----------Cc-CccccccCcEeecCcccccccch------------
Confidence            0000  00000111  0135555555332110          11 13344566666666654444443            


Q ss_pred             eeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc--cc--ccccCCCCcccEEEeccc
Q 037108          146 RYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE--QL--LVSILSLPTLRKLTVNGC  219 (239)
Q Consensus       146 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~--~l--~~~~~~l~~L~~L~i~~c  219 (239)
                                     .++.+++|+.|+++++ +++ .+|.  .+++|+.|+++++.  .+  +..+..+++|+.|+++++
T Consensus       481 ---------------~~~~l~~L~~L~Ls~N-~l~-~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          481 ---------------ALAALRCLEVLQASDN-ALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             ---------------GGGGCTTCCEEECCSS-CCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ---------------hhhcCCCCCEEECCCC-CCC-CCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence                           3466889999999876 676 4663  57889999998765  33  456778899999999987


Q ss_pred             C
Q 037108          220 K  220 (239)
Q Consensus       220 ~  220 (239)
                      +
T Consensus       544 ~  544 (567)
T 1dce_A          544 S  544 (567)
T ss_dssp             G
T ss_pred             c
Confidence            5

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.80  E-value=1.4e-08  Score=76.98  Aligned_cols=30  Identities=30%  Similarity=0.475  Sum_probs=13.5

Q ss_pred             cCcEEeCCCCCCCcccCcc-CCCCccCCccCc
Q 037108            6 KLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCK   36 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~   36 (239)
                      +|++|+++++ .++.+|.. ++++++|++|++
T Consensus        29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l   59 (208)
T 2o6s_A           29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYL   59 (208)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEEcCCC-ccCcCChhhhcccccCcEEEC
Confidence            4455555554 24444432 344444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.79  E-value=5.3e-09  Score=76.54  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             CcccCcEEeCCCCCCCc--ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEe
Q 037108            3 NLIKLHHLNNPSTDSLE--EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISR   64 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~   64 (239)
                      ...+|++|++++|. +.  .+|..++++++|++|++..+.-.   .+..+..+++|+ .+.+.+
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~---~~~~~~~l~~L~-~L~Ls~   80 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLK-KLELSE   80 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCC---CCSSCCCCSSCC-EEEEES
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCC---ChhhhccCCCCC-EEECcC
Confidence            45789999999994 76  89988899999999877543321   114445555555 555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.77  E-value=1.5e-08  Score=76.73  Aligned_cols=161  Identities=17%  Similarity=0.115  Sum_probs=97.4

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      +.++.+++ .++++|.++  .++|++|++....-. ......++++++|+ .+++.+..    ........+..+++|+.
T Consensus        10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLT-QLYLGGNK----LQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCc-EEECCCCc----cCccChhhcCCCCCcCE
Confidence            56777777 588999766  458898877544321 12222356777777 77775432    12222334677889999


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD  167 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~  167 (239)
                      |+++.+.....         ....+..+++|+.|++.++....+|.                          ..++.+++
T Consensus        81 L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~  125 (208)
T 2o6s_A           81 LNLSTNQLQSL---------PNGVFDKLTQLKELALNTNQLQSLPD--------------------------GVFDKLTQ  125 (208)
T ss_dssp             EECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTT
T ss_pred             EECCCCcCCcc---------CHhHhcCccCCCEEEcCCCcCcccCH--------------------------hHhccCCc
Confidence            99986643211         11234567899999998876544432                          12355778


Q ss_pred             ccEEeeccCccccccccC----CCCcccEEEeccccccccccCCCCcccEEEecc
Q 037108          168 LRELFLVSCSKLQRTLLE----YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       168 L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~  218 (239)
                      |++|+++++ +++ .+|.    .+++|+.|++.+++-    ...+++|++|.+..
T Consensus       126 L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~L~~~~  174 (208)
T 2o6s_A          126 LKDLRLYQN-QLK-SVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI  174 (208)
T ss_dssp             CCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSCCB----CCCTTTTHHHHHHH
T ss_pred             CCEEECCCC-ccc-eeCHHHhccCCCccEEEecCCCe----ecCCCCHHHHHHHH
Confidence            888888866 555 3332    467888888877531    23344455544443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.75  E-value=1.6e-08  Score=88.83  Aligned_cols=58  Identities=16%  Similarity=0.048  Sum_probs=36.5

Q ss_pred             CCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCC-CcccEEEecc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSL-PTLRKLTVNG  218 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l-~~L~~L~i~~  218 (239)
                      ..++.+++|++|+++++ ++++..|.   .+++|+.|+++++.-  + +..+..+ ++|++|++++
T Consensus       512 ~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            44567788888888866 56522222   467788888877552  1 2244455 4788888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.74  E-value=2.3e-10  Score=100.06  Aligned_cols=55  Identities=25%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CcCCcccEEeeccCcccccc-c---cCCCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108          163 EGLADLRELFLVSCSKLQRT-L---LEYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~-~---p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~  218 (239)
                      ..+++|++|++++|. +.+. +   -..+++|++|++.++-.   +......+++|++|++.+
T Consensus       290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            346677777777775 4321 1   13577777777764321   222334677888888885

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.74  E-value=1.3e-08  Score=80.25  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=110.8

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      +.++..++++++ .++++| .+.++++|++|++....-   ..+..++.+++|+ .|.+.+.. +...   .+  +..++
T Consensus        18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i---~~l~~l~~l~~L~-~L~L~~N~-i~~~---~~--l~~l~   85 (263)
T 1xeu_A           18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNI---QSLAGMQFFTNLK-ELHLSHNQ-ISDL---SP--LKDLT   85 (263)
T ss_dssp             HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCC---CCCTTGGGCTTCC-EEECCSSC-CCCC---GG--GTTCS
T ss_pred             HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCc---ccchHHhhCCCCC-EEECCCCc-cCCC---hh--hccCC
Confidence            556777888888 588888 688899999997754322   2344667777777 77775432 2211   11  67788


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+....           +..+.. ++|+.|++.++....++                            .++
T Consensus        86 ~L~~L~L~~N~l~~-----------l~~~~~-~~L~~L~L~~N~l~~~~----------------------------~l~  125 (263)
T 1xeu_A           86 KLEELSVNRNRLKN-----------LNGIPS-ACLSRLFLDNNELRDTD----------------------------SLI  125 (263)
T ss_dssp             SCCEEECCSSCCSC-----------CTTCCC-SSCCEEECCSSCCSBSG----------------------------GGT
T ss_pred             CCCEEECCCCccCC-----------cCcccc-CcccEEEccCCccCCCh----------------------------hhc
Confidence            99999998664321           111222 78999999887543322                            234


Q ss_pred             cCCcccEEeeccCccccccccC--CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          164 GLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      .+++|++|+++++ +++ .++.  .+++|+.|+++++.  .+ ..+..+++|+.|++++++
T Consensus       126 ~l~~L~~L~Ls~N-~i~-~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          126 HLKNLEILSIRNN-KLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TCTTCCEEECTTS-CCC-BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             CcccccEEECCCC-cCC-CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            6889999999976 565 4443  68899999998876  23 467788999999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.67  E-value=6e-08  Score=74.25  Aligned_cols=149  Identities=20%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      -+.++++++ .++++|..+..  .+++|++....-........++++++|+ .|.+.+..    .....+..+.++++|+
T Consensus        13 ~~~l~~s~n-~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~L~~N~----i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQ-KLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLR-KINFSNNK----ITDIEEGAFEGASGVN   84 (220)
T ss_dssp             TTEEECCSS-CCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred             CCEeEeCCC-CcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCC-EEECCCCc----CCEECHHHhCCCCCCC
Confidence            357888888 58889987754  3466665332211111111245566666 66654322    2222233566677788


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      .|+++.+.....         ....+..+++|+.|+++++....++                          +..++.++
T Consensus        85 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------------~~~~~~l~  129 (220)
T 2v70_A           85 EILLTSNRLENV---------QHKMFKGLESLKTLMLRSNRITCVG--------------------------NDSFIGLS  129 (220)
T ss_dssp             EEECCSSCCCCC---------CGGGGTTCSSCCEEECTTSCCCCBC--------------------------TTSSTTCT
T ss_pred             EEECCCCccCcc---------CHhHhcCCcCCCEEECCCCcCCeEC--------------------------HhHcCCCc
Confidence            888775543211         1223445677888888776543332                          12345677


Q ss_pred             cccEEeeccCccccccccC---CCCcccEEEecccc
Q 037108          167 DLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE  199 (239)
Q Consensus       167 ~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~  199 (239)
                      +|++|+++++ ++++..|.   .+++|+.|++.+.+
T Consensus       130 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          130 SVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            8888888865 56533343   46778888877644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.67  E-value=1.2e-07  Score=82.62  Aligned_cols=184  Identities=14%  Similarity=0.042  Sum_probs=111.6

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      +|++|+++++ .++.+|..+.  ++|++|++....-.   .+.  +.+++|+ .|++.+.. +..    .+. +.+  +|
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~---~ip--~~l~~L~-~L~Ls~N~-l~~----ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALI---SLP--ELPASLE-YLDACDNR-LST----LPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCS---CCC--CCCTTCC-EEECCSSC-CSC----CCC-CCT--TC
T ss_pred             CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCc---ccc--cccCCCC-EEEccCCC-CCC----cch-hhc--CC
Confidence            7999999999 5888998885  78999987543322   222  3456666 66665432 111    112 333  78


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL  165 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~  165 (239)
                      +.|+++.+....          ++.   .+++|+.|+++++....+|..+..+.    .|.+.+. .+..+  |. ++  
T Consensus       123 ~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~----~L~Ls~N-~L~~l--p~-l~--  179 (571)
T 3cvr_A          123 KHLDVDNNQLTM----------LPE---LPALLEYINADNNQLTMLPELPTSLE----VLSVRNN-QLTFL--PE-LP--  179 (571)
T ss_dssp             CEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSCCCCCCTTCC----EEECCSS-CCSCC--CC-CC--
T ss_pred             CEEECCCCcCCC----------CCC---cCccccEEeCCCCccCcCCCcCCCcC----EEECCCC-CCCCc--ch-hh--
Confidence            888888654321          111   35789999998887666665211111    1333322 11111  22 22  


Q ss_pred             CcccEEeeccCccccccccCCCCcc-------cEEEecccc--ccccccCCCCcccEEEecccCccccccccccC
Q 037108          166 ADLRELFLVSCSKLQRTLLEYLPSL-------ETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAINLSS  231 (239)
Q Consensus       166 ~~L~~L~l~~~~~L~~~~p~~l~~L-------~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  231 (239)
                      ++|++|+++++ +++ .+|...++|       +.|+++++.  .++..+..+++|+.|++++++--...+..+..
T Consensus       180 ~~L~~L~Ls~N-~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          180 ESLEALDVSTN-LLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             TTCCEEECCSS-CCS-SCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CCCCEEECcCC-CCC-chhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            89999999976 676 777633367       889988765  45556667899999999998755544444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.67  E-value=8.9e-09  Score=73.78  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CcccCcEEeCCCCCCCc--ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            3 NLIKLHHLNNPSTDSLE--EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ...+|++|++++|. +.  .+|..++++++|++|++..+.-   ..+..++++++|+ .+++.+..- .   ...+..+.
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~-~L~Ls~n~i-~---~~~~~~~~   85 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLK-KLELSDNRV-S---GGLEVLAE   85 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCC---CCCTTCCCCTTCC-EEECCSSCC-C---SCTHHHHH
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCC---CCchhhhcCCCCC-EEECCCCcc-c---chHHHHhh
Confidence            45789999999995 76  8999999999999998754322   2225677777777 777754332 1   11233344


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI  133 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~  133 (239)
                      .+++|+.|+++.+...        ....+..+..+++|+.|++.++.....|.
T Consensus        86 ~l~~L~~L~ls~N~i~--------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIK--------DLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             HCTTCCEEECTTSCCC--------SHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             hCCCCCEEECCCCcCC--------ChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            5778999998855321        12233566677899999999886544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.66  E-value=1e-07  Score=73.36  Aligned_cols=144  Identities=19%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      +.++.+++ .++.+|.++.  ++|++|++..... .......+.++++|+ .|.+.+..    ........+..+++|+.
T Consensus        22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~L~~N~----l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQI-TKLEPGVFDSLINLK-ELYLGSNQ----LGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred             CEeEccCC-CcCccCCCCC--CCCCEEEcCCCcc-CccCHHHhhCccCCc-EEECCCCC----CCCcChhhcccCCCcCE
Confidence            45666666 4777777664  6777776543221 111223345555555 55554322    11111233455667777


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD  167 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~  167 (239)
                      |+++.+.....         ....+..+++|+.|++.++....+|.                           .++.+++
T Consensus        93 L~Ls~N~l~~l---------~~~~~~~l~~L~~L~Ls~N~l~~lp~---------------------------~~~~l~~  136 (229)
T 3e6j_A           93 LDLGTNQLTVL---------PSAVFDRLVHLKELFMCCNKLTELPR---------------------------GIERLTH  136 (229)
T ss_dssp             EECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCSCCT---------------------------TGGGCTT
T ss_pred             EECCCCcCCcc---------ChhHhCcchhhCeEeccCCcccccCc---------------------------ccccCCC
Confidence            77765432110         01123445677777777765444443                           2245677


Q ss_pred             ccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108          168 LRELFLVSCSKLQRTLLE----YLPSLETLVIRKC  198 (239)
Q Consensus       168 L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c  198 (239)
                      |++|+++++ +++ .+|.    .+++|+.|++.+.
T Consensus       137 L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          137 LTHLALDQN-QLK-SIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CSEEECCSS-CCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCC-cCC-ccCHHHHhCCCCCCEEEeeCC
Confidence            777777765 554 4432    4567777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=1e-07  Score=82.99  Aligned_cols=153  Identities=12%  Similarity=-0.026  Sum_probs=90.6

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      +.+|++|++++| .++.+|   +.+++|++|++....-..   +..+.+  +|+ .|.+.+.. +..    .+.   .++
T Consensus        79 ~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~---ip~l~~--~L~-~L~Ls~N~-l~~----lp~---~l~  140 (571)
T 3cvr_A           79 PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST---LPELPA--SLK-HLDVDNNQ-LTM----LPE---LPA  140 (571)
T ss_dssp             CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC---CCCCCT--TCC-EEECCSSC-CSC----CCC---CCT
T ss_pred             cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC---cchhhc--CCC-EEECCCCc-CCC----CCC---cCc
Confidence            367999999999 588999   568899999875433221   222332  566 66664432 111    111   467


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+....          ++.   .+++|+.|+++++....+|. +.   ..-..|.+.+. ++..+  |. +.
T Consensus       141 ~L~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~L~~lp~-l~---~~L~~L~Ls~N-~L~~l--p~-~~  199 (571)
T 3cvr_A          141 LLEYINADNNQLTM----------LPE---LPTSLEVLSVRNNQLTFLPE-LP---ESLEALDVSTN-LLESL--PA-VP  199 (571)
T ss_dssp             TCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSCCCC-CC---TTCCEEECCSS-CCSSC--CC-CC
T ss_pred             cccEEeCCCCccCc----------CCC---cCCCcCEEECCCCCCCCcch-hh---CCCCEEECcCC-CCCch--hh-HH
Confidence            88898888654321          111   34688999998887666665 31   00002333222 11111  22 22


Q ss_pred             cCCcc-------cEEeeccCccccccccC---CCCcccEEEecccc
Q 037108          164 GLADL-------RELFLVSCSKLQRTLLE---YLPSLETLVIRKCE  199 (239)
Q Consensus       164 ~~~~L-------~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~  199 (239)
                        .+|       +.|+++++ +++ .+|.   .+++|+.|++++++
T Consensus       200 --~~L~~~~~~L~~L~Ls~N-~l~-~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          200 --VRNHHSEETEIFFRCREN-RIT-HIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             ----------CCEEEECCSS-CCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred             --HhhhcccccceEEecCCC-cce-ecCHHHhcCCCCCEEEeeCCc
Confidence              266       99999976 676 6774   58999999999876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.60  E-value=3.2e-09  Score=89.97  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             cCCcccEEeeccCcccccccc--------CCCCcccEEEeccccc-------cccccCCCCcccEEEecccC
Q 037108          164 GLADLRELFLVSCSKLQRTLL--------EYLPSLETLVIRKCEQ-------LLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p--------~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L~i~~c~  220 (239)
                      .+++|++|+++++ .+.+..+        ...++|++|++++|.-       +...+..+++|++|++++|+
T Consensus       339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            3577788888766 4432111        1256788888877641       22234567778888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.59  E-value=1.5e-07  Score=72.10  Aligned_cols=145  Identities=20%  Similarity=0.188  Sum_probs=73.4

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      +.++.+++ .++++|..+.  ++|++|++....-. ......+..+++|+ .|.+.+..    .....+..+.++++|+.
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~-~L~Ls~N~----i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLR-RIDLSNNQ----ISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCC-EEECCSSC----CCEECTTTTTTCSSCCE
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCC-EEECCCCc----CCCcCHHHhhCCcCCCE
Confidence            45677776 4777887665  56677655322110 01111334444555 55543221    11222344556666777


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhh-cCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           88 LLLEWNNSTSNIREPETDTCVLD-LLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      |+++.+....          +.. .+..+++|+.|++.++....++                          +..++.++
T Consensus        85 L~Ls~N~l~~----------l~~~~f~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~l~  128 (220)
T 2v9t_B           85 LVLYGNKITE----------LPKSLFEGLFSLQLLLLNANKINCLR--------------------------VDAFQDLH  128 (220)
T ss_dssp             EECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCC--------------------------TTTTTTCT
T ss_pred             EECCCCcCCc----------cCHhHccCCCCCCEEECCCCCCCEeC--------------------------HHHcCCCC
Confidence            7766543211          111 1234566777777665433322                          12344567


Q ss_pred             cccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108          167 DLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE  199 (239)
Q Consensus       167 ~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~  199 (239)
                      +|++|+++++ +++ .++.    .+++|++|++.+.+
T Consensus       129 ~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          129 NLNLLSLYDN-KLQ-TIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cCC-EECHHHHhCCCCCCEEEeCCCC
Confidence            7777777765 454 3322    35677777776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.57  E-value=1.1e-07  Score=72.73  Aligned_cols=130  Identities=14%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .+|++|+++++ .++.+|. .++++++|++|++....- .......+..+++|+ .|++.+..    ........+..++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLN-SLVLYGNK----ITELPKSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCC-EEECCSSC----CCCCCTTTTTTCT
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCC-EEECCCCc----CCccCHhHccCCC
Confidence            47999999999 5888886 689999999998754322 111234566777777 77765432    1222233457788


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.++....++.                          ..+.
T Consensus       105 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~  149 (220)
T 2v9t_B          105 SLQLLLLNANKINCL---------RVDAFQDLHNLNLLSLYDNKLQTIAK--------------------------GTFS  149 (220)
T ss_dssp             TCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCT--------------------------TTTT
T ss_pred             CCCEEECCCCCCCEe---------CHHHcCCCCCCCEEECCCCcCCEECH--------------------------HHHh
Confidence            999999986653221         12345667899999999886554442                          2345


Q ss_pred             cCCcccEEeeccC
Q 037108          164 GLADLRELFLVSC  176 (239)
Q Consensus       164 ~~~~L~~L~l~~~  176 (239)
                      .+++|++|++.++
T Consensus       150 ~l~~L~~L~L~~N  162 (220)
T 2v9t_B          150 PLRAIQTMHLAQN  162 (220)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEEeCCC
Confidence            6888999999865

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.57  E-value=9.4e-10  Score=96.17  Aligned_cols=54  Identities=28%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             cCCcccEEeeccCcccccc-c---cCCCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108          164 GLADLRELFLVSCSKLQRT-L---LEYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~-~---p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~  218 (239)
                      .+++|++|++++|. +.+. +   ...+|+|++|.+.+|-.   +......+++|++|.+.+
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence            46788888888775 5421 1   23678888888887732   111233578888888844

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.53  E-value=5e-09  Score=88.79  Aligned_cols=56  Identities=25%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             cCCcccEEeeccCcccccc----ccC---CCCcccEEEeccccc-------ccccc-CCCCcccEEEecccC
Q 037108          164 GLADLRELFLVSCSKLQRT----LLE---YLPSLETLVIRKCEQ-------LLVSI-LSLPTLRKLTVNGCK  220 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~----~p~---~l~~L~~L~l~~c~~-------l~~~~-~~l~~L~~L~i~~c~  220 (239)
                      .+++|++|++++| .+.+.    ++.   .+++|++|+++++.-       +...+ ...++|++|++++|.
T Consensus       254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            4678888888877 55421    343   368888888887642       11111 234688899988886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.52  E-value=6.2e-09  Score=90.97  Aligned_cols=197  Identities=15%  Similarity=0.078  Sum_probs=109.8

Q ss_pred             CcccCcEEeCCCCCCCcc--cCccCCCCccCCccCceEeccCCCCChhhh-cccccccceEEEEecc-----CCCChhHH
Q 037108            3 NLIKLHHLNNPSTDSLEE--MPQGIGKLTSLRTMCKFVVGNEIGSGLRQL-KSLIHLQGTVCISRLE-----NVKEISAA   74 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L-~~L~~L~~~L~~~~~~-----~~~~~~~~   74 (239)
                      .+.+|++|++++|. +..  ++.-++++++|++|++..+.  ....+..+ ..+++|+ .|++....     ......+.
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~-~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLR-ELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC-EEEEECSCTTCSSCSSCCCHH
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCC-EEEEecCcccccccCCCCCHH
Confidence            46899999999995 553  33346789999999876431  11222222 2467777 88885421     11112222


Q ss_pred             HHhcc-CcccccccceeEEcCCCCCCCCCcchHHHhhcCC-CCCCcceEEEe--c---cCCCC-cc--chhhhccCccee
Q 037108           75 KEAQL-NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLK-PHQSLKKLKIN--G---YGGTK-FA--IYTLSITGDSLF  144 (239)
Q Consensus        75 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~--~---~~~~~-~p--~~~l~l~~~~~~  144 (239)
                      ....+ ..+++|+.|.+..+..        ... .+..+. ..++|+.|++.  +   +.... .|  ..+..       
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l--------~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-------  426 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQM--------TNA-ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA-------  426 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCC--------CHH-HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH-------
T ss_pred             HHHHHHHhchhHHHHHHhcCCc--------CHH-HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH-------
Confidence            22222 3367888886654321        111 122222 35789999998  2   22211 11  11100       


Q ss_pred             eeeccCCCceeeCCCCC--------CC-cCCcccEEeeccCccccccc----cCCCCcccEEEecccccc----ccccCC
Q 037108          145 SRYARMGKWIPHGSGKS--------DE-GLADLRELFLVSCSKLQRTL----LEYLPSLETLVIRKCEQL----LVSILS  207 (239)
Q Consensus       145 L~l~~~~~l~~~~~~~~--------~~-~~~~L~~L~l~~~~~L~~~~----p~~l~~L~~L~l~~c~~l----~~~~~~  207 (239)
                       .+..+++|+.+.....        .+ .+++|++|++++|. +.+..    ...+++|++|++++|+.-    ......
T Consensus       427 -l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~  504 (594)
T 2p1m_B          427 -IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK  504 (594)
T ss_dssp             -HHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred             -HHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence             0123334433321111        11 27889999999874 43221    135899999999999852    123456


Q ss_pred             CCcccEEEecccCc
Q 037108          208 LPTLRKLTVNGCKE  221 (239)
Q Consensus       208 l~~L~~L~i~~c~~  221 (239)
                      +++|++|++++|+.
T Consensus       505 l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          505 LETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGSSEEEEESSCC
T ss_pred             CCCCCEEeeeCCCC
Confidence            89999999999976

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.51  E-value=1.7e-07  Score=72.22  Aligned_cols=131  Identities=14%  Similarity=0.120  Sum_probs=87.8

Q ss_pred             cccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            4 LIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ..+|++|++++|. +..+ |..++++++|++|++....- .......++.+++|+ .|++.+..    ........+..+
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~~~~l  111 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLT-VLDLGTNQ----LTVLPSAVFDRL  111 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTC
T ss_pred             CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcC-EEECCCCc----CCccChhHhCcc
Confidence            3679999999995 7777 67799999999998754332 111223356677777 77775432    222223446778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|.++.+...          .++..+..+++|+.|++.++....+|.                          ..+
T Consensus       112 ~~L~~L~Ls~N~l~----------~lp~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~  155 (229)
T 3e6j_A          112 VHLKELFMCCNKLT----------ELPRGIERLTHLTHLALDQNQLKSIPH--------------------------GAF  155 (229)
T ss_dssp             TTCCEEECCSSCCC----------SCCTTGGGCTTCSEEECCSSCCCCCCT--------------------------TTT
T ss_pred             hhhCeEeccCCccc----------ccCcccccCCCCCEEECCCCcCCccCH--------------------------HHH
Confidence            89999999866432          233445567899999999876544442                          234


Q ss_pred             CcCCcccEEeeccCc
Q 037108          163 EGLADLRELFLVSCS  177 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~  177 (239)
                      ..+++|+.|++.+++
T Consensus       156 ~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             hCCCCCCEEEeeCCC
Confidence            568899999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.50  E-value=1e-07  Score=78.42  Aligned_cols=151  Identities=19%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             cCcEEeCCCCCCCcccCcc-CC-CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            6 KLHHLNNPSTDSLEEMPQG-IG-KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~-i~-~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .+++|++++| .++.+|.. +. ++++|++|++....-. ......+.++++|+ .|++.+..    ........+..++
T Consensus        40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~  112 (361)
T 2xot_A           40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR-YLDLSSNH----LHTLDEFLFSDLQ  112 (361)
T ss_dssp             TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCT
T ss_pred             CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCC-EEECCCCc----CCcCCHHHhCCCc
Confidence            4677777777 46666654 33 6777777765332111 11112344555555 55554321    1112223355566


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|+++.+.....         ....+..+++|+.|++.++....+|....                       ...+
T Consensus       113 ~L~~L~L~~N~i~~~---------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----------------------~~~~  160 (361)
T 2xot_A          113 ALEVLLLYNNHIVVV---------DRNAFEDMAQLQKLYLSQNQISRFPVELI-----------------------KDGN  160 (361)
T ss_dssp             TCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCSCCGGGT-----------------------C---
T ss_pred             CCCEEECCCCcccEE---------CHHHhCCcccCCEEECCCCcCCeeCHHHh-----------------------cCcc
Confidence            677777664432100         12234445677777777665544443220                       0113


Q ss_pred             cCCcccEEeeccCccccccccC----CCCc--ccEEEecc
Q 037108          164 GLADLRELFLVSCSKLQRTLLE----YLPS--LETLVIRK  197 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~----~l~~--L~~L~l~~  197 (239)
                      .+++|+.|+++++ +++ .+|.    .++.  ++.|++.+
T Consensus       161 ~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          161 KLPKLMLLDLSSN-KLK-KLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             -CTTCCEEECCSS-CCC-CCCHHHHHHSCHHHHTTEECCS
T ss_pred             cCCcCCEEECCCC-CCC-ccCHHHhhhccHhhcceEEecC
Confidence            5778888888865 565 4442    3454  36677765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.43  E-value=4.7e-08  Score=80.49  Aligned_cols=208  Identities=10%  Similarity=0.015  Sum_probs=112.4

Q ss_pred             Ccc-cCcEEeCCCCCCCccc-CccCCCC-----ccCCccCceEeccCCCCChhh----hccc-ccccceEEEEeccCCCC
Q 037108            3 NLI-KLHHLNNPSTDSLEEM-PQGIGKL-----TSLRTMCKFVVGNEIGSGLRQ----LKSL-IHLQGTVCISRLENVKE   70 (239)
Q Consensus         3 ~L~-~Lr~L~l~~~~~~~~l-P~~i~~L-----~~L~~L~~~~~~~~~~~~i~~----L~~L-~~L~~~L~~~~~~~~~~   70 (239)
                      ++. +|++|++++|. ++.. |..++.+     ++|++|++..+.-. ......    +..+ ++|+ .|++.+..-...
T Consensus        48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~  124 (362)
T 3goz_A           48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDELVKTLAAIPFTIT-VLDLGWNDFSSK  124 (362)
T ss_dssp             TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCC-EEECCSSCGGGS
T ss_pred             hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHHHHHHHHhCCCCcc-EEECcCCcCCcH
Confidence            455 89999999994 6665 4556665     89999987554321 122222    3333 6677 777754431111


Q ss_pred             hhHHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCCC-CCcceEEEeccCCCCc-cchhhh-ccCc-ce--
Q 037108           71 ISAAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPH-QSLKKLKINGYGGTKF-AIYTLS-ITGD-SL--  143 (239)
Q Consensus        71 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-p~~~l~-l~~~-~~--  143 (239)
                      ........+..+ ++|+.|+++.+...     ......+.+.+... ++|+.|+++++..... +..+.. +... ..  
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~  199 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLG-----IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT  199 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGG-----GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCC-----HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCC
Confidence            112222334442 58999998865421     12233444444444 4899999988764332 222211 0000 00  


Q ss_pred             eeeeccCCCceeeCC---CCCCCc-CCcccEEeeccCccccccc-------cCCCCcccEEEecccc--c--------cc
Q 037108          144 FSRYARMGKWIPHGS---GKSDEG-LADLRELFLVSCSKLQRTL-------LEYLPSLETLVIRKCE--Q--------LL  202 (239)
Q Consensus       144 ~L~l~~~~~l~~~~~---~~~~~~-~~~L~~L~l~~~~~L~~~~-------p~~l~~L~~L~l~~c~--~--------l~  202 (239)
                      .|.+.+.. +.....   +..+.. .++|++|+++++ .+.+.-       -..+++|+.|++++|.  .        +.
T Consensus       200 ~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          200 SLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             EEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             EEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence            12222110 111000   001112 358999999987 554211       1367899999999876  1        22


Q ss_pred             cccCCCCcccEEEecccC
Q 037108          203 VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       203 ~~~~~l~~L~~L~i~~c~  220 (239)
                      ..++.+++|++|++++++
T Consensus       278 ~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTSTTCCEEEEECTTSCB
T ss_pred             HHhccCCceEEEecCCCc
Confidence            356778889999998765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.42  E-value=2.2e-07  Score=76.40  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=100.1

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhc-ccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLK-SLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~-~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      +.++.+++ .++.+|..+..  .+++|++....- .......+. ++++|+ .|.+.+..    ........+.++++|+
T Consensus        21 ~~l~c~~~-~l~~iP~~~~~--~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~-~L~L~~N~----i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSLPS--YTALLDLSHNNL-SRLRAEWTPTRLTNLH-SLLLSHNH----LNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSS-CCSSCCSSCCT--TCSEEECCSSCC-CEECTTSSSSCCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred             CEEEeCCC-CcCccCccCCC--CCCEEECCCCCC-CccChhhhhhcccccC-EEECCCCc----CCccChhhccCCCCCC
Confidence            67888888 58999987764  577777643221 111112233 566666 66664322    2222234567778888


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      .|+++.+.....         ....+..+++|+.|++.++....++                          +..+..++
T Consensus        92 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~i~~~~--------------------------~~~~~~l~  136 (361)
T 2xot_A           92 YLDLSSNHLHTL---------DEFLFSDLQALEVLLLYNNHIVVVD--------------------------RNAFEDMA  136 (361)
T ss_dssp             EEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEEC--------------------------TTTTTTCT
T ss_pred             EEECCCCcCCcC---------CHHHhCCCcCCCEEECCCCcccEEC--------------------------HHHhCCcc
Confidence            888886542110         1123455678888888877543222                          23456789


Q ss_pred             cccEEeeccCccccccccC-------CCCcccEEEeccccc--cc-cccCCCCc--ccEEEeccc
Q 037108          167 DLRELFLVSCSKLQRTLLE-------YLPSLETLVIRKCEQ--LL-VSILSLPT--LRKLTVNGC  219 (239)
Q Consensus       167 ~L~~L~l~~~~~L~~~~p~-------~l~~L~~L~l~~c~~--l~-~~~~~l~~--L~~L~i~~c  219 (239)
                      +|++|+++++ +++ .+|.       .+++|+.|+++++.-  +. ..+..++.  ++.|++.++
T Consensus       137 ~L~~L~L~~N-~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          137 QLQKLYLSQN-QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             TCCEEECCSS-CCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             cCCEEECCCC-cCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            9999999976 665 5553       378999999987541  21 13445665  477888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.40  E-value=3.5e-07  Score=69.97  Aligned_cols=130  Identities=16%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             ccCcEEeCCCCCCCcccCc--cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ..+++|+++++ .++.+|.  .++++++|++|++....- .......++.+++|+ .|.+.+..    .....+..+..+
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l  104 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVN-EILLTSNR----LENVQHKMFKGL  104 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CCCCCGGGGTTC
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCC-EEECCCCc----cCccCHhHhcCC
Confidence            35789999999 5888843  378999999998754321 111223466677777 77765432    222233456778


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.|+++.+.....         ....+..+++|+.|++.++....++                          +..+
T Consensus       105 ~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~  149 (220)
T 2v70_A          105 ESLKTLMLRSNRITCV---------GNDSFIGLSSVRLLSLYDNQITTVA--------------------------PGAF  149 (220)
T ss_dssp             SSCCEEECTTSCCCCB---------CTTSSTTCTTCSEEECTTSCCCCBC--------------------------TTTT
T ss_pred             cCCCEEECCCCcCCeE---------CHhHcCCCccCCEEECCCCcCCEEC--------------------------HHHh
Confidence            8999999986543211         1344566789999999887654432                          1334


Q ss_pred             CcCCcccEEeeccC
Q 037108          163 EGLADLRELFLVSC  176 (239)
Q Consensus       163 ~~~~~L~~L~l~~~  176 (239)
                      +.+++|++|+++++
T Consensus       150 ~~l~~L~~L~L~~N  163 (220)
T 2v70_A          150 DTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTCTTCCEEECCSC
T ss_pred             cCCCCCCEEEecCc
Confidence            56889999999865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.39  E-value=3.4e-07  Score=65.40  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccc--cccCCCCcccEEEecccCcccccc---ccccC
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLL--VSILSLPTLRKLTVNGCKEVVGRA---INLSS  231 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~--~~~~~l~~L~~L~i~~c~~l~~~~---~~~~~  231 (239)
                      ++.+++|++|+++++ .+.+.+|.   .+++|++|+++++.  .+.  ..+..+++|++|++++|+--...+   ..+..
T Consensus        60 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  138 (149)
T 2je0_A           60 LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL  138 (149)
T ss_dssp             CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred             hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence            356788888888876 45533554   47888888888766  222  456778888888888874322222   23444


Q ss_pred             ccceEeeC
Q 037108          232 SSSVVLWD  239 (239)
Q Consensus       232 l~~L~~~~  239 (239)
                      +++|+.+|
T Consensus       139 l~~L~~L~  146 (149)
T 2je0_A          139 LPQLTYLD  146 (149)
T ss_dssp             CTTCCEET
T ss_pred             CCCccccc
Confidence            55555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.39  E-value=2.9e-07  Score=82.61  Aligned_cols=110  Identities=17%  Similarity=0.040  Sum_probs=76.6

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      ..+.+|+.|+|++| .+..+|..++++++|++|++......  .....+++|++|+ .|++....    .. ..+..+..
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~Ls~N~----l~-~lp~~~~~  291 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLR-VLDLSHNR----LT-SLPAELGS  291 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCC-EEECTTSC----CS-SCCSSGGG
T ss_pred             ccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCC-EEeCcCCc----CC-ccChhhcC
Confidence            46788999999999 48899999999999999987544322  2334577777777 77764432    11 23456777


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK  130 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  130 (239)
                      +++|+.|+++.+...          .++..+..+++|+.|++.++....
T Consensus       292 l~~L~~L~L~~N~l~----------~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT----------TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GTTCSEEECCSSCCC----------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCEEECCCCCCC----------ccChhhhcCCCccEEeCCCCccCC
Confidence            888898888855321          244556777889999998886654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.37  E-value=8.3e-07  Score=64.67  Aligned_cols=126  Identities=23%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             ccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-cc
Q 037108           54 IHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FA  132 (239)
Q Consensus        54 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p  132 (239)
                      ++++ .+.+.+..- .  ....+..+..+++|+.|+++.+....          + ..+..+++|+.|+++++.... +|
T Consensus        24 ~~L~-~L~l~~n~l-~--~~~i~~~~~~l~~L~~L~l~~n~l~~----------~-~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           24 AAVR-ELVLDNCKS-N--DGKIEGLTAEFVNLEFLSLINVGLIS----------V-SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TSCS-EEECCSCBC-B--TTBCSSCCGGGGGCCEEEEESSCCCC----------C-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             ccCC-EEECCCCCC-C--hhhHHHHHHhCCCCCEEeCcCCCCCC----------h-hhhccCCCCCEEECcCCcCchHHH
Confidence            4455 666554331 1  01223445677888888888654211          1 455667788888888876544 33


Q ss_pred             chhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCcccccccc-----CCCCcccEEEecccc--cccc--
Q 037108          133 IYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL-----EYLPSLETLVIRKCE--QLLV--  203 (239)
Q Consensus       133 ~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p-----~~l~~L~~L~l~~c~--~l~~--  203 (239)
                      ..+                           +.+++|++|+++++ .++ .+|     ..+++|+.|++++++  .+..  
T Consensus        89 ~~~---------------------------~~l~~L~~L~Ls~N-~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  139 (168)
T 2ell_A           89 MLA---------------------------EKLPNLTHLNLSGN-KLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYR  139 (168)
T ss_dssp             HHH---------------------------HHCTTCCEEECBSS-SCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred             HHH---------------------------hhCCCCCEEeccCC-ccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence            322                           34788899999877 565 433     257889999998876  2322  


Q ss_pred             --ccCCCCcccEEEecccCccc
Q 037108          204 --SILSLPTLRKLTVNGCKEVV  223 (239)
Q Consensus       204 --~~~~l~~L~~L~i~~c~~l~  223 (239)
                        .+..+++|++|++.+|..-+
T Consensus       140 ~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          140 ESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHHhCccCcEecCCCCChhh
Confidence              56678899999988886433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.30  E-value=8.7e-07  Score=66.21  Aligned_cols=127  Identities=18%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      -++++++++ .++++|..+..  +|++|++..........-..++++++|+ .|++.+..    .....+..+.++++|+
T Consensus        10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQ----LTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSC----CCCBCTTTTTTCTTCC
T ss_pred             CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCC-EEECCCCC----CCCcCHhHcCCcccCC
Confidence            378899998 58999987765  7888876443221111101256666666 67664432    2223345567788889


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      .|+++.+.....         ....+..+++|+.|++.++.....+                          +..++.++
T Consensus        82 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~l~  126 (192)
T 1w8a_A           82 ELQLGENKIKEI---------SNKMFLGLHQLKTLNLYDNQISCVM--------------------------PGSFEHLN  126 (192)
T ss_dssp             EEECCSCCCCEE---------CSSSSTTCTTCCEEECCSSCCCEEC--------------------------TTSSTTCT
T ss_pred             EEECCCCcCCcc---------CHHHhcCCCCCCEEECCCCcCCeeC--------------------------HHHhhcCC
Confidence            998886542211         1223556678898988887543321                          23446688


Q ss_pred             cccEEeeccC
Q 037108          167 DLRELFLVSC  176 (239)
Q Consensus       167 ~L~~L~l~~~  176 (239)
                      +|++|+++++
T Consensus       127 ~L~~L~L~~N  136 (192)
T 1w8a_A          127 SLTSLNLASN  136 (192)
T ss_dssp             TCCEEECTTC
T ss_pred             CCCEEEeCCC
Confidence            8999999865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.21  E-value=3.9e-06  Score=62.74  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      ++++++++ .++++|.++.  .+|++|++....-.  .....+.++++|+ .|++.+..    ........+.++++|+.
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~-~L~Ls~N~----i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLT-LIDLSNNR----ISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCC-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCC-EEECCCCc----CCEeCHhHccCCCCCCE
Confidence            56788777 4788887664  57777765433221  1114566666666 66654322    12222344667788888


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD  167 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~  167 (239)
                      |+++.+.....         ....+..+++|+.|++.++....+|.                          ..+..+++
T Consensus        83 L~Ls~N~l~~i---------~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~  127 (193)
T 2wfh_A           83 LILSYNRLRCI---------PPRTFDGLKSLRLLSLHGNDISVVPE--------------------------GAFNDLSA  127 (193)
T ss_dssp             EECCSSCCCBC---------CTTTTTTCTTCCEEECCSSCCCBCCT--------------------------TTTTTCTT
T ss_pred             EECCCCccCEe---------CHHHhCCCCCCCEEECCCCCCCeeCh--------------------------hhhhcCcc
Confidence            88876543211         12235556788888888875544442                          22345778


Q ss_pred             ccEEeeccC
Q 037108          168 LRELFLVSC  176 (239)
Q Consensus       168 L~~L~l~~~  176 (239)
                      |++|++.+.
T Consensus       128 L~~L~L~~N  136 (193)
T 2wfh_A          128 LSHLAIGAN  136 (193)
T ss_dssp             CCEEECCSS
T ss_pred             ccEEEeCCC
Confidence            888888754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=3.3e-06  Score=61.92  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             CcCCcccEEeeccCccccc----cccCC---CCcccEEEecccccccc----ccCCCCcccEEEecccCccccc
Q 037108          163 EGLADLRELFLVSCSKLQR----TLLEY---LPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGCKEVVGR  225 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~----~~p~~---l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c~~l~~~  225 (239)
                      ..+++|++|++++|..++.    .+...   .++|++|++++|++++.    .+..+++|++|++++|+.+...
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            3588999999999987762    23321   35899999999998864    4567899999999999988743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.12  E-value=2.6e-06  Score=63.69  Aligned_cols=106  Identities=14%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      .+|++|+++++ .++.+|..++++++|++|++....- .......+..+++|+ .|++.+..    .....+..+..+++
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~-~L~Ls~N~----l~~i~~~~f~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLL-TLILSYNR----LRCIPPRTFDGLKS  103 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTTTTCTT
T ss_pred             CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCC-EEECCCCc----cCEeCHHHhCCCCC
Confidence            57999999999 5899999999999999998754332 112223466777777 77765432    22233345778889


Q ss_pred             cccceeEEcCCCCCCCCCcchHHHh-hcCCCCCCcceEEEeccC
Q 037108           85 LKDLLLEWNNSTSNIREPETDTCVL-DLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~  127 (239)
                      |+.|+++.+....          +. ..+..+++|+.+++.++.
T Consensus       104 L~~L~L~~N~l~~----------~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          104 LRLLSLHGNDISV----------VPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCEEECCSSCCCB----------CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCCe----------eChhhhhcCccccEEEeCCCC
Confidence            9999998664321          11 234557899999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.09  E-value=1.3e-06  Score=64.25  Aligned_cols=134  Identities=18%  Similarity=0.105  Sum_probs=83.2

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCc-cCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLT-SLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~-~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      +..+|++|++++| .++.+|. ++.+. +|++|++....-   ..+..++.+++|+ .+.+.+.. +   ....+..+..
T Consensus        17 ~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~L~Ls~N~-l---~~~~~~~~~~   86 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEI---RKLDGFPLLRRLK-TLLVNNNR-I---CRIGEGLDQA   86 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCC---CEECCCCCCSSCC-EEECCSSC-C---CEECSCHHHH
T ss_pred             CcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCC---CcccccccCCCCC-EEECCCCc-c---cccCcchhhc
Confidence            5678999999999 5888874 66666 999998754322   1234566677777 67664432 1   1111112356


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +++|+.|+++.+....        ...+..+..+++|+.|++.++.....|.+...                       .
T Consensus        87 l~~L~~L~L~~N~i~~--------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~-----------------------~  135 (176)
T 1a9n_A           87 LPDLTELILTNNSLVE--------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLY-----------------------V  135 (176)
T ss_dssp             CTTCCEEECCSCCCCC--------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHH-----------------------H
T ss_pred             CCCCCEEECCCCcCCc--------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHH-----------------------H
Confidence            6789999988654211        11122455678899999988765544442100                       1


Q ss_pred             CCcCCcccEEeeccCc
Q 037108          162 DEGLADLRELFLVSCS  177 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~  177 (239)
                      ++.+++|++|+++++.
T Consensus       136 ~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          136 IYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHCTTCSEETTEECC
T ss_pred             HHHCCccceeCCCcCC
Confidence            2457888998888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.02  E-value=2.5e-06  Score=74.42  Aligned_cols=109  Identities=15%  Similarity=0.081  Sum_probs=75.6

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      .|++|++++| .++.+|. +++|++|++|++....-.  ..+..++++++|+ .|.+.+.. +..    .+ .+..+++|
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~Ls~N~-l~~----lp-~l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLE-VLQASDNA-LEN----VD-GVANLPRL  510 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCSSC-CCC----CG-GGTTCSSC
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCC-EEECCCCC-CCC----Cc-ccCCCCCC
Confidence            5889999999 5888997 999999999987554322  2335677788888 77775432 211    22 67788899


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI  133 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~  133 (239)
                      +.|+++.+.....        ..+..+..+++|+.|++.++.....|.
T Consensus       511 ~~L~Ls~N~l~~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          511 QELLLCNNRLQQS--------AAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CEEECCSSCCCSS--------STTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cEEECCCCCCCCC--------CCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999986543211        014556667899999999887655544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.02  E-value=4.6e-06  Score=74.84  Aligned_cols=110  Identities=15%  Similarity=-0.041  Sum_probs=64.7

Q ss_pred             CCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CCC
Q 037108          112 LKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLP  188 (239)
Q Consensus       112 l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~  188 (239)
                      +..+.+|+.|+++++....+|..+..+..-. .|.+.+. .+.  ..|..++.+++|++|+++++ +++ .+|.   .++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~-~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLT-RLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCF  293 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCS-CCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGT
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCC-EEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCC
Confidence            3445566677776665555554321110000 0111111 111  11344567899999999977 576 7775   568


Q ss_pred             cccEEEecccc--ccccccCCCCcccEEEecccCccccccc
Q 037108          189 SLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAI  227 (239)
Q Consensus       189 ~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~  227 (239)
                      +|++|+++++.  .++..+..+++|+.|++++++--...+.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            89999998764  4555678889999999998764433333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.01  E-value=3.1e-06  Score=63.18  Aligned_cols=107  Identities=17%  Similarity=0.132  Sum_probs=73.4

Q ss_pred             cCcEEeCCCCCCCcccCcc--CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            6 KLHHLNNPSTDSLEEMPQG--IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~--i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      +|++|+++++ .++.+|..  ++++++|++|++....- .......++.+++|+ .|++.+..    .....+..+..++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~  102 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQ-ELQLGENK----IKEISNKMFLGLH  102 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCC-EEECCSCC----CCEECSSSSTTCT
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCC-EEECCCCc----CCccCHHHhcCCC
Confidence            7999999999 58888864  89999999998754332 222234566777777 77765432    2223334577788


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG  128 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  128 (239)
                      +|+.|+++.+....         ..+..+..+++|+.|++.++..
T Consensus       103 ~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          103 QLKTLNLYDNQISC---------VMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCCEEECCSSCCCE---------ECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCEEECCCCcCCe---------eCHHHhhcCCCCCEEEeCCCCc
Confidence            99999998664321         1234566678999999988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.01  E-value=2e-05  Score=57.75  Aligned_cols=127  Identities=17%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      .+.++++++ .++.+|.++.  ++|++|++....- .......++++++|+ .+++.+..    ........+..+++|+
T Consensus         9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLT-KLSLSQNQ----IQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred             CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcc-cEeCHHHhcCccccc-EEECCCCc----ceEeChhHccCCCccC
Confidence            467888887 5788886554  6788887644322 111222355666666 66664332    1122223356677888


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      .|+++.+.....         ....+..+++|+.|++.++....+|..                          .+..++
T Consensus        80 ~L~l~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~l~~~~~~--------------------------~~~~l~  124 (177)
T 2o6r_A           80 ILYLHENKLQSL---------PNGVFDKLTQLKELALDTNQLKSVPDG--------------------------IFDRLT  124 (177)
T ss_dssp             EEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCTT--------------------------TTTTCT
T ss_pred             EEECCCCCcccc---------CHHHhhCCcccCEEECcCCcceEeCHH--------------------------HhcCCc
Confidence            888875542211         112234567888888887755444431                          234578


Q ss_pred             cccEEeeccCc
Q 037108          167 DLRELFLVSCS  177 (239)
Q Consensus       167 ~L~~L~l~~~~  177 (239)
                      +|++|++++++
T Consensus       125 ~L~~L~l~~N~  135 (177)
T 2o6r_A          125 SLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEEecCCC
Confidence            89999998763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.98  E-value=1.1e-07  Score=71.52  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             cCCcccEEeeccCcccccccc-----CCCCcccEEEecccc
Q 037108          164 GLADLRELFLVSCSKLQRTLL-----EYLPSLETLVIRKCE  199 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p-----~~l~~L~~L~l~~c~  199 (239)
                      .+++|++|+++++ ++. .++     ..+++|++|++.+++
T Consensus       113 ~l~~L~~L~l~~N-~i~-~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          113 KLVNLRVLYMSNN-KIT-NWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEE-ECC-CHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCCCCCEEECCCC-cCC-chhHHHHHhcCCCCCEEEecCCc
Confidence            4667777777765 343 222     146777777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.74  E-value=0.00012  Score=53.47  Aligned_cols=57  Identities=25%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             CCcCCcccEEeeccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~  220 (239)
                      ++.+++|++|+++++ +++ .+|.    .+++|++|+++++.  .+.. .+..+++|++|++.+++
T Consensus        72 ~~~l~~L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           72 FDKLTKLTILYLHEN-KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCccCEEECCCC-Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            467888888888876 565 3332    46788888887764  2222 24567888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=7.1e-05  Score=60.49  Aligned_cols=75  Identities=16%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             CCCcCCcccEEeeccCccccccccC----CCCccc-EEEecc-ccccc-cccCCCCcccEEEecccCccccccccccCcc
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE----YLPSLE-TLVIRK-CEQLL-VSILSLPTLRKLTVNGCKEVVGRAINLSSSS  233 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~-~L~l~~-c~~l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~  233 (239)
                      .+..+++|+.+++.+.  ++ .++.    .+++|+ .+.+.+ ...+. ..+.++++|+++++.+..--...+..+.+++
T Consensus       245 aF~~~~~L~~l~l~~n--i~-~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN--LK-TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV  321 (329)
T ss_dssp             TTTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred             hhhCCCCCCEEECCcc--cc-eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence            4556778888888753  55 5553    456777 777755 11222 2456788888888765332223344566666


Q ss_pred             ceEee
Q 037108          234 SVVLW  238 (239)
Q Consensus       234 ~L~~~  238 (239)
                      +|+.+
T Consensus       322 ~L~~l  326 (329)
T 3sb4_A          322 PSKLI  326 (329)
T ss_dssp             CCCEE
T ss_pred             chhhh
Confidence            66654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.71  E-value=3.5e-06  Score=63.11  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=19.1

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEe
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVV   39 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~   39 (239)
                      ++.+|++|++++| .++.+| .++++++|++|++...
T Consensus        46 ~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE
T ss_pred             cCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC
Confidence            3455566666555 355555 5555556665555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.69  E-value=9.1e-06  Score=59.61  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      +|++|++++| .++.+ +.++++++|++|++....-.. .....++.+++|+ .+.+.+.. +.....  ...+..+++|
T Consensus        43 ~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~-~L~L~~N~-i~~~~~--~~~l~~l~~L  115 (176)
T 1a9n_A           43 QFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLT-ELILTNNS-LVELGD--LDPLASLKSL  115 (176)
T ss_dssp             CCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCC-EEECCSCC-CCCGGG--GGGGGGCTTC
T ss_pred             CCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCC-EEECCCCc-CCcchh--hHhhhcCCCC
Confidence            8999999999 58888 679999999999875433211 0111135666666 77765432 221111  1256678889


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      +.|+++.+.....   .   ......+..+++|+.|++..+.
T Consensus       116 ~~L~l~~N~i~~~---~---~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          116 TYLCILRNPVTNK---K---HYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSSGGGGS---T---THHHHHHHHCTTCSEETTEECC
T ss_pred             CEEEecCCCCCCc---H---hHHHHHHHHCCccceeCCCcCC
Confidence            9999886542110   0   0000123456789988887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.53  E-value=0.00011  Score=53.50  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      ..+.++++++ .++++|.++.  ++|++|++....- .......++++++|+ .|++.+..    ........+.++++|
T Consensus        10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~f~~l~~L   80 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQI-TKLEPGVFDRLTQLT-RLDLDNNQ----LTVLPAGVFDKLTQL   80 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTC
T ss_pred             CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcC-CccChhhhcCcccCC-EEECCCCC----cCccChhhccCCCCC
Confidence            3578899998 5899998775  8888887754322 112233466677777 77765432    222223345678889


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG  128 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  128 (239)
                      +.|+++.+.....         ....+..+++|+.|++.++..
T Consensus        81 ~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           81 TQLSLNDNQLKSI---------PRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCccCEe---------CHHHhcCCCCCCEEEeCCCCC
Confidence            9999986643211         012355678999999988754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.50  E-value=4.7e-05  Score=55.75  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc----ccccccceeEEcCC
Q 037108           20 EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG----KRNLKDLLLEWNNS   95 (239)
Q Consensus        20 ~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~----l~~L~~L~l~~~~~   95 (239)
                      .+|..--.=.+|+.||+..+. .....+..+..+++|+ .|.+..+..+++   .....+..    .++|+.|+++.|..
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~-~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVE-KIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCC-EEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCC-EEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCc
Confidence            456432222457777776554 3444566677777777 788877766443   22233333    24688888886642


Q ss_pred             CCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC
Q 037108           96 TSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK  130 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  130 (239)
                      .       ... -+..+..+++|+.|++.+|...+
T Consensus       127 I-------TD~-Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          127 V-------TDK-GIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             C-------CHH-HHHHGGGCTTCCEEEEESCTTCC
T ss_pred             C-------CHH-HHHHHhcCCCCCEEECCCCCCCC
Confidence            2       122 23445567888888888886544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.49  E-value=0.00018  Score=52.63  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      -+.++++++ .++++|.++.  ++|++|++....- .......++++++|+ .|++.+..    ........+.++++|+
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~i~~~~~~~l~~L~   84 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQI-TKLEPGVFDHLVNLQ-QLYFNSNK----LTAIPTGVFDKLTQLT   84 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCc-cccCHHHhcCCcCCC-EEECCCCC----CCccChhHhCCcchhh
Confidence            367888888 5889998776  7888887654322 122234466677777 77765432    1222223456778899


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhh-cCCCCCCcceEEEeccCCCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLD-LLKPHQSLKKLKINGYGGTK  130 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~  130 (239)
                      .|+++.+....          +.. .+..+++|+.|++.++....
T Consensus        85 ~L~L~~N~l~~----------l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           85 QLDLNDNHLKS----------IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             EEECCSSCCCC----------CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             EEECCCCccce----------eCHHHhccccCCCEEEeCCCCccc
Confidence            99988654321          222 25567899999998876443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.44  E-value=9.2e-05  Score=53.94  Aligned_cols=84  Identities=12%  Similarity=0.091  Sum_probs=56.6

Q ss_pred             cccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            4 LIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      ..+|++|++++| .++.+ |..++++++|++|++....-. ......++++++|+ .|++.+..    ........+..+
T Consensus        29 ~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~-~L~L~~N~----l~~~~~~~~~~l  101 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT-QLSLNDNQ----LKSIPRGAFDNL  101 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTC
T ss_pred             CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC-EEECCCCc----cCEeCHHHhcCC
Confidence            367999999999 58888 566999999999987543321 11222356677777 77765432    222223446778


Q ss_pred             cccccceeEEcC
Q 037108           83 RNLKDLLLEWNN   94 (239)
Q Consensus        83 ~~L~~L~l~~~~   94 (239)
                      ++|+.|+++.+.
T Consensus       102 ~~L~~L~L~~N~  113 (170)
T 3g39_A          102 KSLTHIWLLNNP  113 (170)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEEeCCCC
Confidence            899999998654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.41  E-value=0.0001  Score=53.91  Aligned_cols=83  Identities=11%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .+|++|++++| .+..+ |..++++++|++|++....-. ......++++++|+ .|++.+..    ........+..++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~-~L~L~~N~----l~~l~~~~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLT-QLDLNDNH----LKSIPRGAFDNLK  105 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCT
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhh-EEECCCCc----cceeCHHHhcccc
Confidence            67999999999 47887 567899999999987543321 11112246677777 77765432    1222223467788


Q ss_pred             ccccceeEEcC
Q 037108           84 NLKDLLLEWNN   94 (239)
Q Consensus        84 ~L~~L~l~~~~   94 (239)
                      +|+.|+++.+.
T Consensus       106 ~L~~L~L~~N~  116 (174)
T 2r9u_A          106 SLTHIYLYNNP  116 (174)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999998654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.30  E-value=0.00021  Score=58.65  Aligned_cols=166  Identities=18%  Similarity=0.122  Sum_probs=87.1

Q ss_pred             ccCccCCCCccCCccCceEeccCC-------CCCh-hhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeE
Q 037108           20 EMPQGIGKLTSLRTMCKFVVGNEI-------GSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLE   91 (239)
Q Consensus        20 ~lP~~i~~L~~L~~L~~~~~~~~~-------~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~   91 (239)
                      .++..+.++++|+.|.+.......       ...+ .-+..+++|+ .|.+.+..+.. .     ..+ ..++|+.|.+.
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~-~L~L~g~~~l~-l-----~~~-~~~~L~~L~L~  201 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN-NLKIKGTNNLS-I-----GKK-PRPNLKSLEII  201 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCC-EEEEECCBTCB-C-----CSC-BCTTCSEEEEE
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCc-EEEEeCCCCce-e-----ccc-cCCCCcEEEEe
Confidence            355667777888888553321110       1112 2245667788 88876542211 1     112 26789999987


Q ss_pred             EcCCCCCCCCCcchHHHhhcC--CCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCccc
Q 037108           92 WNNSTSNIREPETDTCVLDLL--KPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLR  169 (239)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~  169 (239)
                      .+..        . ......+  ..+++|+.|++...........           .+..+   ...   ...+.||+|+
T Consensus       202 ~~~l--------~-~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-----------~~~~l---~~~---l~~~~~p~Lr  255 (362)
T 2ra8_A          202 SGGL--------P-DSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-----------DMNVF---RPL---FSKDRFPNLK  255 (362)
T ss_dssp             CSBC--------C-HHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-----------CGGGT---GGG---SCTTTCTTCC
T ss_pred             cCCC--------C-hHHHHHHHHccCCCCcEEEEeccccccccch-----------hHHHH---HHH---HhcCCCCCcC
Confidence            4431        1 1112222  2467899998863210000000           00000   000   1124589999


Q ss_pred             EEeeccCcccc-c--ccc--CCCCcccEEEecccccccc--------ccCCCCcccEEEecccC
Q 037108          170 ELFLVSCSKLQ-R--TLL--EYLPSLETLVIRKCEQLLV--------SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       170 ~L~l~~~~~L~-~--~~p--~~l~~L~~L~l~~c~~l~~--------~~~~l~~L~~L~i~~c~  220 (239)
                      +|.+.+|..-. +  .+.  ..+|+|++|+++.+. +..        .+..+++|+.|++++|.
T Consensus       256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            99998774221 0  111  258899999996543 322        23457889999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.14  E-value=0.00018  Score=58.43  Aligned_cols=78  Identities=17%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             EeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccce
Q 037108           10 LNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLL   89 (239)
Q Consensus        10 L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~   89 (239)
                      ++.++.+.++.+|. |+.+++|++|++...+.........++.|++|+ .|++.+..    .....+..+.++++|+.|+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-~L~l~~N~----l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSG----LRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-EEECCSSC----CCEECTTGGGSCSCCCEEE
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-EEECCCCc----cceeCHHHhcCCcCCCEEe
Confidence            34444323555555 555555555554321111111122344455444 44443221    1112223344555566666


Q ss_pred             eEEc
Q 037108           90 LEWN   93 (239)
Q Consensus        90 l~~~   93 (239)
                      ++.+
T Consensus        87 l~~N   90 (347)
T 2ifg_A           87 LSFN   90 (347)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.06  E-value=0.0003  Score=57.10  Aligned_cols=86  Identities=16%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             CCCcccCcEEeCCC-CCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhc
Q 037108            1 MGNLIKLHHLNNPS-TDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQ   78 (239)
Q Consensus         1 i~~L~~Lr~L~l~~-~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~   78 (239)
                      |+.+.+|++|+|++ | .++.+| ..+++|++|++|++....- .+.....+++|++|+ .|++.+.. +   .......
T Consensus        27 l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~-l---~~~~~~~   99 (347)
T 2ifg_A           27 LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLS-RLNLSFNA-L---ESLSWKT   99 (347)
T ss_dssp             SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCC-EEECCSSC-C---SCCCSTT
T ss_pred             CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCC-EEeCCCCc-c---ceeCHHH
Confidence            46788999999997 6 688988 5699999999998854321 222233467777777 77775432 1   1111222


Q ss_pred             cCcccccccceeEEcC
Q 037108           79 LNGKRNLKDLLLEWNN   94 (239)
Q Consensus        79 l~~l~~L~~L~l~~~~   94 (239)
                      +..++ |+.|.+..+.
T Consensus       100 ~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A          100 VQGLS-LQELVLSGNP  114 (347)
T ss_dssp             TCSCC-CCEEECCSSC
T ss_pred             cccCC-ceEEEeeCCC
Confidence            33333 8888887554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.84  E-value=0.00099  Score=54.64  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=38.2

Q ss_pred             cCCcccEEeeccCcc-------ccc---ccc-CCCCcccEEEeccccccc------cccCCCCcccEEEecccCccc
Q 037108          164 GLADLRELFLVSCSK-------LQR---TLL-EYLPSLETLVIRKCEQLL------VSILSLPTLRKLTVNGCKEVV  223 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~-------L~~---~~p-~~l~~L~~L~l~~c~~l~------~~~~~l~~L~~L~i~~c~~l~  223 (239)
                      .+|+|++|++..+.+       +++   .+. ..+|+|+.|.+.+|.--.      ...+.+|+|++|+++.+ .+.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~  292 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLT  292 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence            589999999853211       210   111 258999999998876321      12357899999999764 444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.82  E-value=2.1e-05  Score=64.92  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             ccCcEEeCCCCCCCcccC-----ccCC-CCccCCccCceEeccCCCCChhhh-cccccccceEEEEeccCCCChh-HHHH
Q 037108            5 IKLHHLNNPSTDSLEEMP-----QGIG-KLTSLRTMCKFVVGNEIGSGLRQL-KSLIHLQGTVCISRLENVKEIS-AAKE   76 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP-----~~i~-~L~~L~~L~~~~~~~~~~~~i~~L-~~L~~L~~~L~~~~~~~~~~~~-~~~~   76 (239)
                      .+|++|++++|. ++..+     ..+. +.++|++|++..+.- ....+..+ ..+++|+ .|++.+.. +.+.. ....
T Consensus        72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~-~L~Ls~n~-l~~~~~~~L~  147 (372)
T 3un9_A           72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRAR-KLGLQLNS-LGPEACKDLR  147 (372)
T ss_dssp             TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEE-EEECCSSC-CCHHHHHHHH
T ss_pred             hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhcc-HhhcCCCC-CCHHHHHHHH
Confidence            568888888884 55432     1122 225777776643221 11111111 1233344 45443321 11110 1111


Q ss_pred             hcc-CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           77 AQL-NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        77 ~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      ..+ ...++|+.|+++++...     ......+.+.+...++|++|+++++.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLT-----AAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCH-----HHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             HHHHhcCCccceeeCCCCCCC-----hHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            112 23356777776654310     11122334444455667777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.0024  Score=51.41  Aligned_cols=70  Identities=10%  Similarity=0.037  Sum_probs=46.4

Q ss_pred             CCcccEEeeccCccccccccC----CCCcccEEEeccc-ccccc-ccCCCCccc-EEEecccCccccc-cccccCccceE
Q 037108          165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC-EQLLV-SILSLPTLR-KLTVNGCKEVVGR-AINLSSSSSVV  236 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c-~~l~~-~~~~l~~L~-~L~i~~c~~l~~~-~~~~~~l~~L~  236 (239)
                      +++|+.+++.++ +++ .+|.    .+++|+++.+.+. ..+.. .+.++++|+ .+.+.+  +++.+ +..+..+++|+
T Consensus       225 ~~~L~~l~L~~n-~i~-~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NAT-TIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-Ccc-eecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            678899998865 465 6664    4678888888652 22222 456788898 999876  55433 35566666666


Q ss_pred             ee
Q 037108          237 LW  238 (239)
Q Consensus       237 ~~  238 (239)
                      .+
T Consensus       301 ~l  302 (329)
T 3sb4_A          301 YV  302 (329)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.05  E-value=0.08  Score=43.86  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=16.4

Q ss_pred             cCcEEeCCCCCCCcccCc-cCCCCccCCccCc
Q 037108            6 KLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCK   36 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~   36 (239)
                      +|+.+.+.+.  ++.++. .+.++++|+.+++
T Consensus       158 ~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          158 TVQEIVFPST--LEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             CCCEEECCTT--CCEECSSTTTTCTTCCEEEC
T ss_pred             CceEEEeCCC--ccEehHHHhhCcccCCeeec
Confidence            4566666553  555653 3556666666644

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.40  E-value=0.003  Score=49.49  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=25.3

Q ss_pred             CcccCcEEeCCCCCCCcccC---ccCCCCccCCccCce
Q 037108            3 NLIKLHHLNNPSTDSLEEMP---QGIGKLTSLRTMCKF   37 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP---~~i~~L~~L~~L~~~   37 (239)
                      ++.+|+.|+|++|. +..++   ..++++++|++|++.
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls  204 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLS  204 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECT
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECC
Confidence            46789999999984 66544   556788888888774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.16  E-value=0.0054  Score=45.11  Aligned_cols=117  Identities=13%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccCCCCC---h-hhhcccccccceEEEEeccCCCC-hh
Q 037108            3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNEIGSG---L-RQLKSLIHLQGTVCISRLENVKE-IS   72 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~---i-~~L~~L~~L~~~L~~~~~~~~~~-~~   72 (239)
                      ...+|++|++++|..++.     +...+.+.++|++|++..+.-. ...   + ..+...+.|+ .|++.+.. +.+ ..
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~~g~~~l~~~L~~n~~L~-~L~L~~N~-i~~~g~  110 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-DPVAFALAEMLKVNNTLK-SLNVESNF-ISGSGI  110 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-HHHHHHHHHHHHHCSSCC-EEECCSSC-CCHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-hHHHHHHHHHHHhCCCcC-EEECcCCc-CCHHHH
Confidence            456789999988722432     4556677788888877433211 111   1 1233445566 66664432 111 11


Q ss_pred             HHHHhccCccccccccee--EEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           73 AAKEAQLNGKRNLKDLLL--EWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        73 ~~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      ......+...+.|+.|++  .++..     .......+.+.+...+.|+.|++.++.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i-----~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPL-----GNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCC-----CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCC-----CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            223345566667888888  54432     112223344555555678888887653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.64  E-value=0.0014  Score=54.05  Aligned_cols=115  Identities=16%  Similarity=0.109  Sum_probs=56.7

Q ss_pred             ccCcEEeCCCCCCCccc--CccCCCCccCCccCceEeccCCCCChhhh-----cccccccceEEEEeccCCCC-hhHHHH
Q 037108            5 IKLHHLNNPSTDSLEEM--PQGIGKLTSLRTMCKFVVGNEIGSGLRQL-----KSLIHLQGTVCISRLENVKE-ISAAKE   76 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~l--P~~i~~L~~L~~L~~~~~~~~~~~~i~~L-----~~L~~L~~~L~~~~~~~~~~-~~~~~~   76 (239)
                      .+|++|++++|. ++.-  ..-...+++|++|++..+.- .......+     ...+.|+ .|++.+.. +.+ ......
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~-~L~Ls~n~-l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQIT-TLRLSNNP-LTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCC-EEECCSSC-CHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccc-eeeCCCCC-CChHHHHHHH
Confidence            578888888884 5431  11123456777777643321 11111222     1234455 56654432 111 111222


Q ss_pred             hccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108           77 AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG  128 (239)
Q Consensus        77 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  128 (239)
                      ..+...++|+.|+++++...     ......+.+.+...++|+.|+++++..
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~-----~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLG-----DEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCH-----HHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHhcCCCcCEEeCCCCCCC-----cHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            33445567788877754311     111223445555556788888877654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.55  E-value=0.023  Score=44.36  Aligned_cols=74  Identities=18%  Similarity=0.168  Sum_probs=48.1

Q ss_pred             cCCcccEEeeccCccccc--cccC---CCCcccEEEecccc--ccccccCCCC--cccEEEecccCccccc-------cc
Q 037108          164 GLADLRELFLVSCSKLQR--TLLE---YLPSLETLVIRKCE--QLLVSILSLP--TLRKLTVNGCKEVVGR-------AI  227 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~--~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~--~L~~L~i~~c~~l~~~-------~~  227 (239)
                      .+|+|++|+++++ ++.+  .+|.   .+|+|+.|++++..  .+ ..+..+.  +|++|.+.+++--...       ..
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4889999999976 6653  3342   68999999998644  23 2333333  8999999987743211       12


Q ss_pred             cccCccceEeeC
Q 037108          228 NLSSSSSVVLWD  239 (239)
Q Consensus       228 ~~~~l~~L~~~~  239 (239)
                      .+..+++|+.+|
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            345566666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.77  E-value=0.025  Score=41.46  Aligned_cols=121  Identities=18%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             hhHHHHhccCcccccccceeEEc-CCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcceeeeec
Q 037108           71 ISAAKEAQLNGKRNLKDLLLEWN-NSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSLFSRYA  148 (239)
Q Consensus        71 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~~L~l~  148 (239)
                      ........+...+.|++|+++.+ ..     .......+.+.+...++|+.|+++++....-. ..+.            
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i-----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~------------   86 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNI-----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------------   86 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTC-----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH------------
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCC-----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH------------
Confidence            44444455666677888877744 21     11223445555666678888888776432100 0000            


Q ss_pred             cCCCceeeCCCCCCCcCCcccEEeeccCccccc----ccc---CCCCcccEEEe--cccc-------ccccccCCCCccc
Q 037108          149 RMGKWIPHGSGKSDEGLADLRELFLVSCSKLQR----TLL---EYLPSLETLVI--RKCE-------QLLVSILSLPTLR  212 (239)
Q Consensus       149 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~----~~p---~~l~~L~~L~l--~~c~-------~l~~~~~~l~~L~  212 (239)
                                 ......++|++|++++| .+..    .+.   ...++|++|++  .++.       .+...+...++|+
T Consensus        87 -----------~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~  154 (185)
T 1io0_A           87 -----------EMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL  154 (185)
T ss_dssp             -----------HHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             -----------HHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence                       00112456778888766 3431    111   13567888888  4433       1222344557788


Q ss_pred             EEEecccC
Q 037108          213 KLTVNGCK  220 (239)
Q Consensus       213 ~L~i~~c~  220 (239)
                      +|++++|.
T Consensus       155 ~L~L~~n~  162 (185)
T 1io0_A          155 KFGYHFTQ  162 (185)
T ss_dssp             EEECCCSS
T ss_pred             EEeccCCC
Confidence            88887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.22  E-value=0.41  Score=32.75  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=23.2

Q ss_pred             cCcEEeCCCCCCCcccCcc-CCCCccCCccCce
Q 037108            6 KLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKF   37 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~   37 (239)
                      +|++|+|++| .++.+|.+ +..+.+|++|++.
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCC-cCCccChhhhhhccccCEEEec
Confidence            6888888888 58888865 4667778777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.3
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.17
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.16
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.1
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.94
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	91.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	89.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.26

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.41  E-value=3.1e-13  Score=107.39  Aligned_cols=199  Identities=16%  Similarity=0.129  Sum_probs=113.6

Q ss_pred             cCcEEeCCCCCCCc---ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            6 KLHHLNNPSTDSLE---EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~---~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      +++.|+++++. +.   .+|++|++|++|++|++..+....+..+.++++|++|+ .|++....-    ....+..+..+
T Consensus        51 ~v~~L~L~~~~-l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~-~L~Ls~N~l----~~~~~~~~~~~  124 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLYITHTNV----SGAIPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS-EEEEEEECC----EEECCGGGGGC
T ss_pred             EEEEEECCCCC-CCCCCCCChHHhcCccccccccccccccccccccccccccccc-hhhhccccc----cccccccccch
Confidence            57888888874 33   58888999999999988765544445566788888888 888765432    11222334455


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-CccchhhhccCc--------ce--------e-
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSITGD--------SL--------F-  144 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~~~--------~~--------~-  144 (239)
                      .+|+.+.+..+...         ..++..+..++.++.+++.++... .+|.++......        ..        + 
T Consensus       125 ~~L~~l~l~~N~~~---------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         125 KTLVTLDFSYNALS---------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             TTCCEEECCSSEEE---------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             hhhccccccccccc---------ccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            66777766643211         112334455567777777665432 234333111100        00        0 


Q ss_pred             ----eeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc---ccccccCCCCcccEEE
Q 037108          145 ----SRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE---QLLVSILSLPTLRKLT  215 (239)
Q Consensus       145 ----L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~  215 (239)
                          ..+....+...-..+...+.+++|+.+++.++ .+.+.+|.  .+++|+.|+++++.   .++..+..+++|++|+
T Consensus       196 ~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~  274 (313)
T d1ogqa_         196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccCccCeecccCChHHhCCCCCCEEE
Confidence                00000000000011334556778888888766 45545553  46788888887765   3555677788888888


Q ss_pred             ecccC
Q 037108          216 VNGCK  220 (239)
Q Consensus       216 i~~c~  220 (239)
                      ++++.
T Consensus       275 Ls~N~  279 (313)
T d1ogqa_         275 VSFNN  279 (313)
T ss_dssp             CCSSE
T ss_pred             CcCCc
Confidence            88753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-13  Score=107.91  Aligned_cols=182  Identities=18%  Similarity=0.229  Sum_probs=102.2

Q ss_pred             CcccCcEEeCCCCCCCcc--cCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            3 NLIKLHHLNNPSTDSLEE--MPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ...+|++||+++|. +..  ++.-+.++++|++|++..+. .....+..+.++++|+ .+++.++..+++  ........
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~-~L~Ls~c~~itd--~~l~~l~~  118 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLV-RLNLSGCSGFSE--FALQTLLS  118 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCS-EEECTTCBSCCH--HHHHHHHH
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCc-Cccccccccccc--cccchhhH
Confidence            35678888888773 432  44556777888888765442 1223455566777777 777765554431  11222234


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcC-CCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLL-KPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSG  159 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~  159 (239)
                      .+++|++|+++++...       ....+...+ ...++|+.|.+.++...-....+..                      
T Consensus       119 ~~~~L~~L~ls~c~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~----------------------  169 (284)
T d2astb2         119 SCSRLDELNLSWCFDF-------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------------------  169 (284)
T ss_dssp             HCTTCCEEECCCCTTC-------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------------------
T ss_pred             HHHhcccccccccccc-------ccccchhhhcccccccchhhhcccccccccccccc----------------------
Confidence            4677888888765321       112221111 1235778888776521100000000                      


Q ss_pred             CCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccccccc----ccCCCCcccEEEeccc
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGC  219 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c  219 (239)
                       -...+|+|++|++++|..+++....   .+|+|++|++.+|..+..    .++.+|+|++|++.+|
T Consensus       170 -l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         170 -LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             0123677888888877766532221   467888888888876643    3456788888888877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=5.1e-12  Score=95.71  Aligned_cols=180  Identities=19%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      .|.+|++|++.+| .+++++ ++++|++|++|++....   ...+..++++++++ .+.+..... +..     ..+.++
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~---i~~~~~l~~l~~l~-~l~~~~n~~-~~i-----~~l~~l  106 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ---ITDLAPLKNLTKIT-ELELSGNPL-KNV-----SAIAGL  106 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC---CCCCGGGTTCCSCC-EEECCSCCC-SCC-----GGGTTC
T ss_pred             HcCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCce---eecccccccccccc-ccccccccc-ccc-----cccccc
Confidence            4678999999999 588885 69999999999875432   12344466666666 555543221 111     234556


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      ++|+.+.+..+...           -...+...+.++.+.+.++.....+                            .+
T Consensus       107 ~~L~~l~l~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~~  147 (227)
T d1h6ua2         107 QSIKTLDLTSTQIT-----------DVTPLAGLSNLQVLYLDLNQITNIS----------------------------PL  147 (227)
T ss_dssp             TTCCEEECTTSCCC-----------CCGGGTTCTTCCEEECCSSCCCCCG----------------------------GG
T ss_pred             cccccccccccccc-----------ccchhccccchhhhhchhhhhchhh----------------------------hh
Confidence            67777666532211           0112233455566655544332211                            12


Q ss_pred             CcCCcccEEeeccCcccccccc-CCCCcccEEEecccccccc--ccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          163 EGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCEQLLV--SILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~~l~~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      ..+++|++|++.++ .+.+..+ ..+++|++|+++++. ++.  .+..+++|++|++++| +++..+ .++++++|++
T Consensus       148 ~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~  221 (227)
T d1h6ua2         148 AGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFI  221 (227)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCE
T ss_pred             cccccccccccccc-ccccchhhcccccceecccCCCc-cCCChhhcCCCCCCEEECcCC-cCCCCc-ccccCCCCCE
Confidence            33556666666654 3321111 246666666666552 322  3445666666666666 344433 1334444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.27  E-value=4.4e-13  Score=106.51  Aligned_cols=207  Identities=18%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             CCCcccCcEEeCCCC-CCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPST-DSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~-~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      |++|++||+|+++++ ...+.+|++|++|++|++|++...... +.....+.++.+|+ .+.+....    .....+..+
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~-~l~l~~N~----~~~~~p~~l  145 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV-TLDFSYNA----LSGTLPPSI  145 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC-EEECCSSE----EESCCCGGG
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhc-cccccccc----ccccCchhh
Confidence            578999999999974 334589999999999999998765432 12223455566666 55553322    122233456


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCc-ceEEEeccCCCC-ccchhhhcc-------Ccce---e-ee
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSL-KKLKINGYGGTK-FAIYTLSIT-------GDSL---F-SR  146 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~-~p~~~l~l~-------~~~~---~-L~  146 (239)
                      .++++++.++++.+...         ..++..+.....+ +.+.+..+.... .|..+..+.       ....   . ..
T Consensus       146 ~~l~~L~~l~l~~n~l~---------~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~  216 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRIS---------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             GGCTTCCEEECCSSCCE---------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred             ccCcccceeeccccccc---------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67778888887744321         1122223233332 444443322111 111111100       0000   0 01


Q ss_pred             eccCCCceee--------CCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccccccccc---CCCCccc
Q 037108          147 YARMGKWIPH--------GSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLVSI---LSLPTLR  212 (239)
Q Consensus       147 l~~~~~l~~~--------~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~~~---~~l~~L~  212 (239)
                      ...++++..+        ..++.++.+++|+.|+++++ +++|.+|.   .+++|++|+++++. +...+   +.+++|+
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP~~~~L~~L~  294 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQGGNLQRFD  294 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSE-EEEECCCSTTGGGSC
T ss_pred             ccccccccccccccccccccccccccccccccccCccC-eecccCChHHhCCCCCCEEECcCCc-ccccCCCcccCCCCC
Confidence            1111222211        11345677899999999977 77788886   57999999998864 43333   4567788


Q ss_pred             EEEecccCcccc
Q 037108          213 KLTVNGCKEVVG  224 (239)
Q Consensus       213 ~L~i~~c~~l~~  224 (239)
                      .+.+.+++.+..
T Consensus       295 ~l~l~~N~~l~g  306 (313)
T d1ogqa_         295 VSAYANNKCLCG  306 (313)
T ss_dssp             GGGTCSSSEEES
T ss_pred             HHHhCCCccccC
Confidence            888888776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=6.3e-11  Score=95.95  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CCcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEecccCcccccc--ccccCccce
Q 037108          162 DEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRA--INLSSSSSV  235 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~--~~~~~l~~L  235 (239)
                      ...++++++|+++++ +++ .++  ..+|+|++|++++|.  .+ ..+..+++|++|++++| ++...+  ..+++|++|
T Consensus       303 ~~~~~~l~~L~ls~n-~l~-~l~~l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L  378 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NIS-DISPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHN-QISDLTPLANLTRITQL  378 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCS-CCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEE
T ss_pred             cchhcccCeEECCCC-CCC-CCcccccCCCCCEEECCCCCCCCC-hhHcCCCCCCEEECCCC-cCCCChhhccCCCCCEe
Confidence            345677778887765 555 333  368999999999885  33 25778899999999876 455433  234445555


Q ss_pred             Ee
Q 037108          236 VL  237 (239)
Q Consensus       236 ~~  237 (239)
                      .+
T Consensus       379 ~L  380 (384)
T d2omza2         379 GL  380 (384)
T ss_dssp             EC
T ss_pred             eC
Confidence            44

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.17  E-value=1.8e-10  Score=91.88  Aligned_cols=70  Identities=21%  Similarity=0.077  Sum_probs=56.9

Q ss_pred             cCCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          164 GLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      .+++|++|++++| +++ .+|..+++|+.|+++++. ++..-..+++|++|++++|+ ++..|....++++|++
T Consensus       282 ~~~~L~~L~Ls~N-~l~-~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLI-ELPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM  351 (353)
T ss_dssp             CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEEC
T ss_pred             cCCCCCEEECCCC-ccC-ccccccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCccccccCeeEC
Confidence            4789999999987 787 899889999999998764 53322345689999999987 8888888888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.1e-11  Score=92.26  Aligned_cols=195  Identities=14%  Similarity=0.087  Sum_probs=110.6

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      ..+++|+|++| .++.+|. .+.++++|++|++....-. .........++.++ .+.+.......   ......+.+++
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~-~l~~~~~~~~~---~l~~~~~~~l~  105 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLE-QLDLSDNAQLR---SVDPATFHGLG  105 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC-EEECCSCTTCC---CCCTTTTTTCT
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccc-cccccccccccccc-ccccccccccc---cccchhhcccc
Confidence            35799999999 5899986 4899999999986432211 01111223333444 44433222222   22234567778


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRYARMGKWIPHGSGKSD  162 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l~~~~~l~~~~~~~~~  162 (239)
                      +|+.|++..+.....         .........+|+.+++.++....+|. .+.....- ..+.+.+. ++..+. +..+
T Consensus       106 ~L~~L~l~~n~~~~~---------~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-~~L~l~~N-~l~~l~-~~~f  173 (284)
T d1ozna_         106 RLHTLHLDRCGLQEL---------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGN-RISSVP-ERAF  173 (284)
T ss_dssp             TCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCCEEC-TTTT
T ss_pred             cCCEEecCCcccccc---------cccccchhcccchhhhccccccccChhHhccccch-hhcccccC-cccccc-hhhh
Confidence            888888875432110         12233445688888888876655543 22111000 01222222 222222 3445


Q ss_pred             CcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cc-cccCCCCcccEEEecc
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNG  218 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~  218 (239)
                      ..+++|+++++.++ ++.+..|.   .+++|++|+++++.-  +. ..+..+++|++|++.+
T Consensus       174 ~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         174 RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccccccchhhhhhc-cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            66788888888876 45434443   467888888877652  21 2567888889888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.4e-10  Score=87.58  Aligned_cols=164  Identities=17%  Similarity=0.186  Sum_probs=108.6

Q ss_pred             CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN   80 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~   80 (239)
                      ++++++|++|++++| .+..+++ ++++.+|++++...+   ....+..+.++++|+ .+.+.......      ...+.
T Consensus        59 l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n---~~~~i~~l~~l~~L~-~l~l~~~~~~~------~~~~~  126 (227)
T d1h6ua2          59 VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN---PLKNVSAIAGLQSIK-TLDLTSTQITD------VTPLA  126 (227)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC---CCSCCGGGTTCTTCC-EEECTTSCCCC------CGGGT
T ss_pred             HhcCCCCcEeecCCc-eeecccc-ccccccccccccccc---ccccccccccccccc-ccccccccccc------cchhc
Confidence            357899999999999 5888764 899999998876432   224556677777777 67664433211      11233


Q ss_pred             cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108           81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK  160 (239)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~  160 (239)
                      ..+.++.+.+..+...           ....+...++|+.|.+.++.....+                            
T Consensus       127 ~~~~~~~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~~~~~~----------------------------  167 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQIT-----------NISPLAGLTNLQYLSIGNAQVSDLT----------------------------  167 (227)
T ss_dssp             TCTTCCEEECCSSCCC-----------CCGGGGGCTTCCEEECCSSCCCCCG----------------------------
T ss_pred             cccchhhhhchhhhhc-----------hhhhhccccccccccccccccccch----------------------------
Confidence            4455666665533211           0112334568898888776432211                            


Q ss_pred             CCCcCCcccEEeeccCccccccccC--CCCcccEEEecccccccc--ccCCCCcccEEEecc
Q 037108          161 SDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQLLV--SILSLPTLRKLTVNG  218 (239)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l~~--~~~~l~~L~~L~i~~  218 (239)
                      .++.+++|+.|+++++ +++ .++.  .+|+|++|++++|. ++.  .+.++++|+.|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n-~l~-~l~~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDN-KIS-DISPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSS-CCC-CCGGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCC-ccC-CChhhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            2356899999999987 676 5653  68999999999984 543  467889999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=2.7e-10  Score=84.24  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF   37 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~   37 (239)
                      +.++++|+++++ .+.+++ ++.++++|++|++.
T Consensus        39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls   70 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFS   70 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECC
T ss_pred             hcCCCEEECCCC-CCCCcc-ccccCCCcCcCccc
Confidence            456666777666 366654 46666666666553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=4.5e-10  Score=90.79  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceE
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFV   38 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~   38 (239)
                      +.|++|++|++++| .++++|+ +++|++|++|++..
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~   97 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNN   97 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred             ccCCCCCEEeCcCC-cCCCCcc-ccCCcccccccccc
Confidence            46788888888888 5888874 88888888887644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-10  Score=88.59  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             CcCCcccEEeeccCcccccccc-C---CCCcccEEEecccc--ccccccCCCCcccEEEecc
Q 037108          163 EGLADLRELFLVSCSKLQRTLL-E---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNG  218 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p-~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~  218 (239)
                      ..+++|+.++++++ +++ .++ .   .+++|++|+++++.  .++..+..+++|+.|.+.+
T Consensus       145 ~~l~~l~~l~l~~N-~l~-~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         145 TPTPKLEKLSLANN-NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTCTTCCEEECTTS-CCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             cccccchhcccccc-ccc-ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence            44666777777654 554 332 1   35667777776544  2333444566677777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=6.4e-10  Score=82.92  Aligned_cols=161  Identities=19%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      |.+|++|++++| .++.++ ++.++++|++|++....-   ..+..++++++|+ .+.+.+.. ++..     ..+..++
T Consensus        45 L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~i---~~l~~~~~l~~L~-~L~l~~n~-i~~l-----~~l~~l~  112 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL---TDIKPLANLKNLG-WLFLDENK-VKDL-----SSLKDLK  112 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCCG-----GGGTTCT
T ss_pred             hcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCccc---cCccccccCcccc-cccccccc-cccc-----ccccccc
Confidence            567788888887 477766 477788888876643321   2233455555555 55543321 1111     1244455


Q ss_pred             ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108           84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE  163 (239)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~  163 (239)
                      +|+.|.+..+...           .+..+...++++.+.+.++.....                            ....
T Consensus       113 ~L~~L~l~~~~~~-----------~~~~l~~l~~l~~l~~~~n~l~~~----------------------------~~~~  153 (210)
T d1h6ta2         113 KLKSLSLEHNGIS-----------DINGLVHLPQLESLYLGNNKITDI----------------------------TVLS  153 (210)
T ss_dssp             TCCEEECTTSCCC-----------CCGGGGGCTTCCEEECCSSCCCCC----------------------------GGGG
T ss_pred             ccccccccccccc-----------cccccccccccccccccccccccc----------------------------cccc
Confidence            5555555432210           011223334555555544322111                            1123


Q ss_pred             cCCcccEEeeccCcccccccc--CCCCcccEEEeccccccc--cccCCCCcccEEEecc
Q 037108          164 GLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQLL--VSILSLPTLRKLTVNG  218 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~~l~--~~~~~l~~L~~L~i~~  218 (239)
                      .+++|+.+++.++ ++. .++  ..+++|++|+++++. ++  ..+..+++|++|++++
T Consensus       154 ~l~~L~~l~l~~n-~l~-~i~~l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 RLTKLDTLSLEDN-QIS-DIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCSEEECCSS-CCC-CCGGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc-ccc-ccccccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            4667777777765 454 343  256777777776653 22  2355667777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=7.4e-10  Score=81.83  Aligned_cols=56  Identities=18%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS   63 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~   63 (239)
                      +++++|++|++++| .++.+|+ ++++++|++|++....   ...+..++++++|+ .+.+.
T Consensus        59 ~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~---~~~~~~l~~l~~L~-~L~l~  114 (199)
T d2omxa2          59 EYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ---IADITPLANLTNLT-GLTLF  114 (199)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC---CCCCGGGTTCTTCS-EEECC
T ss_pred             ccCCCcCcCccccc-cccCccc-ccCCcccccccccccc---cccccccccccccc-ccccc
Confidence            56899999999999 5888875 9999999999764322   22334455556565 55554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.8e-11  Score=93.35  Aligned_cols=73  Identities=21%  Similarity=0.338  Sum_probs=51.8

Q ss_pred             CCcccEEeeccCc-cccc----cccCCCCcccEEEecccccccc----ccCCCCcccEEEecccCccccc-cccccCccc
Q 037108          165 LADLRELFLVSCS-KLQR----TLLEYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGCKEVVGR-AINLSSSSS  234 (239)
Q Consensus       165 ~~~L~~L~l~~~~-~L~~----~~p~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c~~l~~~-~~~~~~l~~  234 (239)
                      .++|+.|++.+|. .+..    .+...+|+|++|++++|..+..    .+..+++|++|++++|..+... ...++++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            5789999999874 3321    2334689999999999997753    4567899999999999987632 223444444


Q ss_pred             eEe
Q 037108          235 VVL  237 (239)
Q Consensus       235 L~~  237 (239)
                      |+.
T Consensus       227 L~~  229 (284)
T d2astb2         227 LKT  229 (284)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=1.7e-09  Score=85.04  Aligned_cols=202  Identities=14%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR   83 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~   83 (239)
                      .++++|++++| .++++|+ .+.++++|++|++...... ......++++++|+ .+.+.+.. .+...    ..  ...
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~-~L~l~~n~-l~~l~----~~--~~~  100 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLE-RLYLSKNQ-LKELP----EK--MPK  100 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCC-EEECCSSC-CSBCC----SS--CCT
T ss_pred             CCCCEEECcCC-cCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccC-EecccCCc-cCcCc----cc--hhh
Confidence            67999999999 6999996 5899999999987544322 11223456666666 66664321 11000    00  011


Q ss_pred             ccccceeEEcCCCC-----------------CCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh-hhccCcceee
Q 037108           84 NLKDLLLEWNNSTS-----------------NIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT-LSITGDSLFS  145 (239)
Q Consensus        84 ~L~~L~l~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-l~l~~~~~~L  145 (239)
                      .++.|....+....                 ..............+...++|+.+.+.++....+|..+ .++.    .+
T Consensus       101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~----~L  176 (305)
T d1xkua_         101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT----EL  176 (305)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCS----EE
T ss_pred             hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccC----EE
Confidence            22222222111000                 00000001111122334467777777776555444322 0000    13


Q ss_pred             eeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108          146 RYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       146 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~  220 (239)
                      .+.+......  .+..+..++++++|+++++ .+++..+.   .+++|++|+++++.  .++..+..+++|++|+++++.
T Consensus       177 ~l~~n~~~~~--~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         177 HLDGNKITKV--DAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             ECTTSCCCEE--CTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             ECCCCcCCCC--ChhHhhccccccccccccc-cccccccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence            3322211111  1234556788899999876 56522232   57899999999875  344567789999999999964


Q ss_pred             cccc
Q 037108          221 EVVG  224 (239)
Q Consensus       221 ~l~~  224 (239)
                       ++.
T Consensus       254 -i~~  256 (305)
T d1xkua_         254 -ISA  256 (305)
T ss_dssp             -CCC
T ss_pred             -cCc
Confidence             553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.9e-09  Score=83.14  Aligned_cols=184  Identities=19%  Similarity=0.149  Sum_probs=112.2

Q ss_pred             ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      ..+...+-+++ .++++|++|.  +++++|++....- .......+.++++|+ .|.+.+.. +...     .....+++
T Consensus        10 ~~~~~v~C~~~-~L~~iP~~lp--~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~-~L~L~~N~-l~~l-----~~~~~l~~   78 (266)
T d1p9ag_          10 ASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLT-QLNLDRAE-LTKL-----QVDGTLPV   78 (266)
T ss_dssp             TTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCC-SEEEGGGGTTCTTCC-EEECTTSC-CCEE-----ECCSCCTT
T ss_pred             CCCeEEEccCC-CCCeeCcCcC--cCCCEEECcCCcC-CCcCHHHhhcccccc-cccccccc-cccc-----cccccccc
Confidence            34445576776 4788888775  5677776633211 111123456666666 66654321 1111     12345678


Q ss_pred             cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCc
Q 037108           85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEG  164 (239)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~  164 (239)
                      |+.|+++.+....          ....+..+++|+.++++++....++.                          .....
T Consensus        79 L~~L~Ls~N~l~~----------~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~~~~  122 (266)
T d1p9ag_          79 LGTLDLSHNQLQS----------LPLLGQTLPALTVLDVSFNRLTSLPL--------------------------GALRG  122 (266)
T ss_dssp             CCEEECCSSCCSS----------CCCCTTTCTTCCEEECCSSCCCCCCS--------------------------STTTT
T ss_pred             ccccccccccccc----------cccccccccccccccccccccceeec--------------------------ccccc
Confidence            8888887554211          12334456788888887765443332                          23356


Q ss_pred             CCcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEecccCccccccccccCccceEe
Q 037108          165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL  237 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~  237 (239)
                      ++++++|++.++ .+. .+|.    .+++|+.+++.++.  .+. ..+..+++|++|+++++. ++.+|..+..+++|+.
T Consensus       123 l~~l~~L~l~~n-~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         123 LGELQELYLKGN-ELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPF  199 (266)
T ss_dssp             CTTCCEEECTTS-CCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSE
T ss_pred             cccccccccccc-ccc-eeccccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCCCE
Confidence            788999999876 565 5542    57899999998865  222 246788999999999975 7777766655555554


Q ss_pred             e
Q 037108          238 W  238 (239)
Q Consensus       238 ~  238 (239)
                      +
T Consensus       200 L  200 (266)
T d1p9ag_         200 A  200 (266)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=9.6e-10  Score=81.92  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=96.3

Q ss_pred             CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG   81 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~   81 (239)
                      .++++|++|++++| .++.+|. +++|++|++|++....   -..+..+.++++|+ .+.+.+.... .     ...+..
T Consensus        65 ~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~---i~~l~~l~~l~~L~-~L~l~~~~~~-~-----~~~l~~  132 (210)
T d1h6ta2          65 QYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK---VKDLSSLKDLKKLK-SLSLEHNGIS-D-----INGLVH  132 (210)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC---CCCGGGGTTCTTCC-EEECTTSCCC-C-----CGGGGG
T ss_pred             hhCCCCCEEeCCCc-cccCccc-cccCcccccccccccc---cccccccccccccc-cccccccccc-c-----cccccc
Confidence            56889999999999 5888884 8999999999875432   23455677777777 6766433221 1     123556


Q ss_pred             ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108           82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS  161 (239)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~  161 (239)
                      +++++.+.+.++....           ......+++|+.+++.++....++.                            
T Consensus       133 l~~l~~l~~~~n~l~~-----------~~~~~~l~~L~~l~l~~n~l~~i~~----------------------------  173 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQISDIVP----------------------------  173 (210)
T ss_dssp             CTTCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------
T ss_pred             cccccccccccccccc-----------ccccccccccccccccccccccccc----------------------------
Confidence            6777877776543211           1122345789999998775433221                            


Q ss_pred             CCcCCcccEEeeccCccccccccC--CCCcccEEEecc
Q 037108          162 DEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRK  197 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~  197 (239)
                      +..+++|++|+++++ +++ .+|.  .+++|++|++++
T Consensus       174 l~~l~~L~~L~Ls~N-~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCC-CCC-CChhhcCCCCCCEEEccC
Confidence            346899999999977 676 6663  688999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=81.39  Aligned_cols=82  Identities=16%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             cCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108            6 KLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN   84 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~   84 (239)
                      ++++|+++++ .++.+|.+ +.++++|++|++.............+..++.++ .+.+....+.   .......+.++++
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~-~l~~~~~n~l---~~~~~~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH-EIRIEKANNL---LYINPEAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC-EEEEECCTTC---CEECTTSEECCTT
T ss_pred             CCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccc-cccccccccc---ccccccccccccc
Confidence            6777777777 47777754 577777777765433221111112234444444 5544333221   1122233455666


Q ss_pred             cccceeEE
Q 037108           85 LKDLLLEW   92 (239)
Q Consensus        85 L~~L~l~~   92 (239)
                      |+.+.+..
T Consensus       105 L~~l~l~~  112 (242)
T d1xwdc1         105 LQYLLISN  112 (242)
T ss_dssp             CCEEEEES
T ss_pred             ccccccch
Confidence            77777663

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4e-09  Score=82.05  Aligned_cols=178  Identities=15%  Similarity=0.053  Sum_probs=104.3

Q ss_pred             CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108            1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL   79 (239)
Q Consensus         1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l   79 (239)
                      +.++.+|++|+++++ .+..++.. ..++..++.+...............++++++|+ .+.+.....    ........
T Consensus        52 f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~-~L~l~~n~~----~~~~~~~~  125 (284)
T d1ozna_          52 FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH-TLHLDRCGL----QELGPGLF  125 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC-EEECTTSCC----CCCCTTTT
T ss_pred             hhccccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCC-EEecCCccc----cccccccc
Confidence            357889999999999 47777654 466777777654332222233344567777777 776643321    11223345


Q ss_pred             CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeeeccCCCceeeCC
Q 037108           80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRYARMGKWIPHGS  158 (239)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l~~~~~l~~~~~  158 (239)
                      ....+|+.+.+..+.....         ....+....+|+.|++.++....++. ++..+..-. .+.+.+. ++... .
T Consensus       126 ~~~~~L~~l~l~~N~l~~i---------~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~-~l~l~~N-~l~~i-~  193 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQAL---------PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD-RLLLHQN-RVAHV-H  193 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-EEECCSS-CCCEE-C
T ss_pred             chhcccchhhhcccccccc---------ChhHhccccchhhcccccCcccccchhhhccccccc-hhhhhhc-ccccc-C
Confidence            5567788888875542211         01234556789999999887655543 221110000 1122111 11222 2


Q ss_pred             CCCCCcCCcccEEeeccCcccccccc---CCCCcccEEEecc
Q 037108          159 GKSDEGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRK  197 (239)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~  197 (239)
                      +..++.+++|++|+++++ ++.+..+   ..+++|++|++++
T Consensus       194 ~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhHhhhhhhccccccccc-ccccccccccccccccCEEEecC
Confidence            566788999999999976 5652322   2688999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=4.1e-08  Score=76.86  Aligned_cols=211  Identities=17%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      .++.++=++. .++++|.+|.  +++++|++....-. ......+.++++|+ .+++.....    ....+..+.++++|
T Consensus        11 ~~~~~~C~~~-~L~~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~-~L~l~~n~~----~~i~~~~f~~l~~L   81 (305)
T d1xkua_          11 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLH-TLILINNKI----SKISPGAFAPLVKL   81 (305)
T ss_dssp             ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCC-EEECCSSCC----CCBCTTTTTTCTTC
T ss_pred             cCCEEEecCC-CCCccCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccc-ccccccccc----cccchhhhhCCCcc
Confidence            3456665554 5899999885  68999987543211 11112466777777 777654432    22234557788899


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhh-------cc--Ccce-e-----eeeccC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLS-------IT--GDSL-F-----SRYARM  150 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~-------l~--~~~~-~-----L~l~~~  150 (239)
                      +.|.+..+....          ++..  ....++.+....+....++.....       +.  .... +     -.+..+
T Consensus        82 ~~L~l~~n~l~~----------l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l  149 (305)
T d1xkua_          82 ERLYLSKNQLKE----------LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  149 (305)
T ss_dssp             CEEECCSSCCSB----------CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             CEecccCCccCc----------Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccc
Confidence            999988654211          1111  123555665555433333221100       00  0000 0     111222


Q ss_pred             CCceeeCC------CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecc
Q 037108          151 GKWIPHGS------GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNG  218 (239)
Q Consensus       151 ~~l~~~~~------~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~  218 (239)
                      +++.....      ..+.+.+++|++|++.++.... ..+.   .++.++.|.++++.-  + ...+..+++|++|++++
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cccCccccccCCccccCcccCCccCEEECCCCcCCC-CChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            22222111      1123457889999998764332 4332   467788888877642  2 12556789999999999


Q ss_pred             cCccccccccccCccceEeeC
Q 037108          219 CKEVVGRAINLSSSSSVVLWD  239 (239)
Q Consensus       219 c~~l~~~~~~~~~l~~L~~~~  239 (239)
                      | +++.+|..+.++++|+.+|
T Consensus       229 N-~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         229 N-KLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             S-CCSSCCTTTTTCSSCCEEE
T ss_pred             c-cccccccccccccCCCEEE
Confidence            8 6777777777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1e-08  Score=73.07  Aligned_cols=114  Identities=18%  Similarity=0.057  Sum_probs=72.9

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      +..+||.|++++| .++.+|.-...+++|++|++....-   ..+..+..+++|+ .+.+.+.. +.   ......+..+
T Consensus        16 n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i---~~l~~~~~l~~L~-~L~ls~N~-i~---~l~~~~~~~l   86 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLK-TLLVNNNR-IC---RIGEGLDQAL   86 (162)
T ss_dssp             CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCC---CEECCCCCCSSCC-EEECCSSC-CC---EECSCHHHHC
T ss_pred             CcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCC---CccCCcccCcchh-hhhccccc-cc---CCCccccccc
Confidence            5668999999999 5999997668899999998854321   2233455666666 66665432 11   1111123456


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI  133 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~  133 (239)
                      ++|+.|+++.+....        ..-+..+..+++|+.+++.++.....|.
T Consensus        87 ~~L~~L~L~~N~i~~--------~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          87 PDLTELILTNNSLVE--------LGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             TTCCEEECCSCCCCC--------GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cccccceeccccccc--------cccccccccccccchhhcCCCccccccc
Confidence            789999988654211        1112445667899999999886555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.7e-07  Score=68.13  Aligned_cols=63  Identities=19%  Similarity=0.168  Sum_probs=42.8

Q ss_pred             CCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEec
Q 037108            2 GNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRL   65 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~   65 (239)
                      .++++|++|++++|.....+|. .+.++++++++...............+..+++|+ .+.+.+.
T Consensus        50 ~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~-~l~l~~~  113 (242)
T d1xwdc1          50 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ-YLLISNT  113 (242)
T ss_dssp             TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC-EEEEESC
T ss_pred             hccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc-ccccchh
Confidence            5789999999999954444553 4788999998865443333333344567777777 7877654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=1.1e-07  Score=64.37  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=45.9

Q ss_pred             cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108            8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD   87 (239)
Q Consensus         8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~   87 (239)
                      |+|+++++ .++.+| .++++++|++|++....-.  .....++.+++|+ .+.+.+.. +...     ..+..+++|+.
T Consensus         1 R~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~-~L~l~~N~-i~~l-----~~~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLE-VLQASDNA-LENV-----DGVANLPRLQE   69 (124)
T ss_dssp             SEEECTTS-CCSSCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCSSC-CCCC-----GGGTTCSSCCE
T ss_pred             CEEEcCCC-CCCCCc-ccccCCCCCEEECCCCccC--cchhhhhhhhccc-cccccccc-cccc-----CccccccccCe
Confidence            45666666 355555 3666666666655322111  1112344555555 55543321 1111     12455566666


Q ss_pred             ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      |+++.+.....        ..+..+..+++|+.+++.++.
T Consensus        70 L~l~~N~i~~~--------~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          70 LLLCNNRLQQS--------AAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             EECCSSCCCSS--------STTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCccCCC--------CCchhhcCCCCCCEEECCCCc
Confidence            66664432110        011223344566666666544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=1.4e-06  Score=58.69  Aligned_cols=15  Identities=13%  Similarity=0.091  Sum_probs=7.1

Q ss_pred             CCCCCcceEEEeccC
Q 037108          113 KPHQSLKKLKINGYG  127 (239)
Q Consensus       113 ~~~~~L~~L~l~~~~  127 (239)
                      ..+++|+.+++.++.
T Consensus        62 ~~l~~L~~L~l~~N~   76 (124)
T d1dcea3          62 ANLPRLQELLLCNNR   76 (124)
T ss_dssp             TTCSSCCEEECCSSC
T ss_pred             ccccccCeEECCCCc
Confidence            334455555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.21  E-value=3e-06  Score=66.70  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=40.7

Q ss_pred             cCCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCC-cccEEEec
Q 037108          164 GLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLP-TLRKLTVN  217 (239)
Q Consensus       164 ~~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~-~L~~L~i~  217 (239)
                      .+++|+.|++++| +++ .+|..+++|++|++++|+ ++ .++.+| +|+.|.+.
T Consensus       302 ~~~~L~~L~L~~N-~L~-~l~~~~~~L~~L~L~~N~-L~-~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         302 LPPRLERLIASFN-HLA-EVPELPQNLKQLHVEYNP-LR-EFPDIPESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-CS-SCCCCCTTCCEEECC
T ss_pred             ccCCCCEEECCCC-cCC-ccccccCCCCEEECcCCc-CC-CCCccccccCeeECc
Confidence            4789999999876 787 899888899999999987 63 566555 68888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.6e-07  Score=64.17  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=42.6

Q ss_pred             CcCCcccEEeeccCccccccccC----CCCcccEEEecccc--cccc--ccCCCCcccEEEecccCccccc---cccccC
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV--SILSLPTLRKLTVNGCKEVVGR---AINLSS  231 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~--~~~~l~~L~~L~i~~c~~l~~~---~~~~~~  231 (239)
                      ..+++|++|++++| +++ .+|.    .+|+|+.|.+.++.  .+..  .+..+++|+++.+.+|+--...   +..+..
T Consensus        60 ~~l~~L~~L~ls~N-~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~  137 (162)
T d1a9na_          60 PLLRRLKTLLVNNN-RIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK  137 (162)
T ss_dssp             CCCSSCCEEECCSS-CCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred             ccCcchhhhhcccc-ccc-CCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHH
Confidence            45677777777766 454 4432    46777777777654  3322  4556777777777776532111   123444


Q ss_pred             ccceEeeC
Q 037108          232 SSSVVLWD  239 (239)
Q Consensus       232 l~~L~~~~  239 (239)
                      +++|+.+|
T Consensus       138 lp~L~~LD  145 (162)
T d1a9na_         138 VPQVRVLD  145 (162)
T ss_dssp             CTTCSEET
T ss_pred             CCCcCeeC
Confidence            55555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=3.4e-06  Score=61.13  Aligned_cols=127  Identities=18%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108            7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK   86 (239)
Q Consensus         7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~   86 (239)
                      .+.++.++. .++++|.+|.  +++++|++....-........++++++|+ .|.+.+..-    .......+..+++|+
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~-~L~L~~N~i----~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQL----TGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSCC----CCBCTTTTTTCTTCC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEe-eeecccccc----ccccccccccccccc
Confidence            346777777 5788888774  67788876543221112223345666666 666644321    122234556677888


Q ss_pred             cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108           87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA  166 (239)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~  166 (239)
                      .|+++.+.....         ....+..+++|+.|++.++....+|.                          +.+..++
T Consensus        82 ~L~Ls~N~l~~l---------~~~~F~~l~~L~~L~L~~N~l~~i~~--------------------------~~f~~l~  126 (192)
T d1w8aa_          82 ELQLGENKIKEI---------SNKMFLGLHQLKTLNLYDNQISCVMP--------------------------GSFEHLN  126 (192)
T ss_dssp             EEECCSCCCCEE---------CSSSSTTCTTCCEEECCSSCCCEECT--------------------------TSSTTCT
T ss_pred             eeeecccccccc---------CHHHHhCCCcccccccCCccccccCH--------------------------HHhcCCc
Confidence            888875542110         12234566788888888876544432                          2345577


Q ss_pred             cccEEeeccC
Q 037108          167 DLRELFLVSC  176 (239)
Q Consensus       167 ~L~~L~l~~~  176 (239)
                      +|++|++++.
T Consensus       127 ~L~~l~L~~N  136 (192)
T d1w8aa_         127 SLTSLNLASN  136 (192)
T ss_dssp             TCCEEECTTC
T ss_pred             cccccccccc
Confidence            8888888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.94  E-value=4.2e-08  Score=72.12  Aligned_cols=14  Identities=14%  Similarity=0.048  Sum_probs=7.9

Q ss_pred             CCCcceEEEeccCC
Q 037108          115 HQSLKKLKINGYGG  128 (239)
Q Consensus       115 ~~~L~~L~l~~~~~  128 (239)
                      +++|+.|+++++..
T Consensus        69 l~~L~~L~Ls~N~i   82 (198)
T d1m9la_          69 MENLRILSLGRNLI   82 (198)
T ss_dssp             HTTCCEEECCEEEE
T ss_pred             CccccChhhccccc
Confidence            34666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.76  E-value=4.2e-05  Score=55.14  Aligned_cols=59  Identities=24%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             CCCCcCCcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEecccC
Q 037108          160 KSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGCK  220 (239)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c~  220 (239)
                      ..+..+++|++|+++++ +++ .+|.    .+++|++|++++..  .+. ..+..+++|+++++.+.+
T Consensus        72 ~~~~~~~~L~~L~Ls~N-~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          72 NAFEGASHIQELQLGEN-KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTTTTCTTCCEEECCSC-CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccccccceeeeccc-ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            45566888888888866 666 5542    57888888887754  222 246678888888887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.54  E-value=4.5e-06  Score=60.90  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=56.8

Q ss_pred             CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108            3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK   82 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l   82 (239)
                      .|.+|++|++++| .++++| +++++++|++|++....-.....+.  ..+.+|+ .+.+.+.. +...     ..+..+
T Consensus        46 ~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~--~~~~~L~-~L~l~~N~-i~~l-----~~~~~l  114 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLD--AVADTLE-ELWISYNQ-IASL-----SGIEKL  114 (198)
T ss_dssp             HTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHH--HHHHHCC-EEECSEEE-CCCH-----HHHHHH
T ss_pred             cccccceeECccc-CCCCcc-cccCCccccChhhcccccccccccc--ccccccc-cccccccc-cccc-----cccccc
Confidence            4667777777777 477775 4777777777776554322211111  1122344 45443321 2211     124456


Q ss_pred             cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      ++|+.|+++.+...        ....+..+..+++|+.|++.++.
T Consensus       115 ~~L~~L~L~~N~i~--------~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNLRVLYMSNNKIT--------NWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEEECC--------CHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccchhc--------cccccccccCCCccceeecCCCc
Confidence            67778877755321        11112345566788888887753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00056  Score=47.33  Aligned_cols=33  Identities=27%  Similarity=0.104  Sum_probs=15.7

Q ss_pred             CcCCcccEEeeccCccccccccC---CCCcccEEEecc
Q 037108          163 EGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRK  197 (239)
Q Consensus       163 ~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~  197 (239)
                      ..+++|++|+++++ +++ .+|.   ...+|+.|++.+
T Consensus        77 ~~l~~L~~L~Ls~N-~l~-~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          77 HFTPRLSRLNLSFN-ALE-SLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             GSCSCCCEEECCSS-CCS-CCCSTTTCSCCCCEEECCS
T ss_pred             cccccccceeccCC-CCc-ccChhhhccccccccccCC
Confidence            34555555555543 444 4432   123455555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00025  Score=49.20  Aligned_cols=107  Identities=16%  Similarity=0.063  Sum_probs=61.9

Q ss_pred             cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108            6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL   85 (239)
Q Consensus         6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L   85 (239)
                      ....++.++. ...+.|..+..+++|++|++.............+..+++|+ .|.+.+..    .....+..+..+++|
T Consensus         9 ~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~-~L~Ls~N~----l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           9 GSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSG----LRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-EEECCSSC----CCEECTTGGGSCSCC
T ss_pred             CCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccC-cceeeccc----cCCcccccccccccc
Confidence            3456777776 46788888888888888865322211112233466667676 66664332    222233456667888


Q ss_pred             ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108           86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG  128 (239)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  128 (239)
                      +.|+++.+....          +.........|+.|++.++..
T Consensus        83 ~~L~Ls~N~l~~----------l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          83 SRLNLSFNALES----------LSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCCSC----------CCSTTTCSCCCCEEECCSSCC
T ss_pred             cceeccCCCCcc----------cChhhhccccccccccCCCcc
Confidence            888888664321          111212223688888887643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.94  E-value=0.00011  Score=57.68  Aligned_cols=60  Identities=12%  Similarity=-0.048  Sum_probs=34.3

Q ss_pred             CCcccCcEEeCCCCCCCcc-----------cCccCCCCccCCccCceEeccCCCCChh----hhcccccccceEEEEe
Q 037108            2 GNLIKLHHLNNPSTDSLEE-----------MPQGIGKLTSLRTMCKFVVGNEIGSGLR----QLKSLIHLQGTVCISR   64 (239)
Q Consensus         2 ~~L~~Lr~L~l~~~~~~~~-----------lP~~i~~L~~L~~L~~~~~~~~~~~~i~----~L~~L~~L~~~L~~~~   64 (239)
                      ...++|+.|+++++. ...           +...+.+.++|++|++..+.. ....+.    .+...++|+ .+.+..
T Consensus        56 ~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~-~L~l~~  130 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLE-HLYLHN  130 (344)
T ss_dssp             TTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-CTTTHHHHHHHHHHCTTCC-EEECCS
T ss_pred             HhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCccccccccccc-ccccccchhhhhcccccch-heeccc
Confidence            456788899998763 222           223355677888887754432 122222    244556677 676643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.90  E-value=0.00019  Score=56.33  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=37.6

Q ss_pred             CCcCCcccEEeeccCccccc----ccc---CCCCcccEEEeccccc-------cccccC--CCCcccEEEecccC
Q 037108          162 DEGLADLRELFLVSCSKLQR----TLL---EYLPSLETLVIRKCEQ-------LLVSIL--SLPTLRKLTVNGCK  220 (239)
Q Consensus       162 ~~~~~~L~~L~l~~~~~L~~----~~p---~~l~~L~~L~l~~c~~-------l~~~~~--~l~~L~~L~i~~c~  220 (239)
                      ....++|+.|++++++ +..    .+.   ...++|++|.+.+|.-       +-..+.  ..++|++|+++++.
T Consensus       211 l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            3457889999998763 321    111   2578899999988861       111222  34679999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0021  Score=44.55  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             CcccCcEEeCCCCCCCcccC---ccCCCCccCCccCc
Q 037108            3 NLIKLHHLNNPSTDSLEEMP---QGIGKLTSLRTMCK   36 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~lP---~~i~~L~~L~~L~~   36 (239)
                      ++.+|++|++++| .++.++   ..++++++|++|++
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccc
Confidence            3566777777777 366553   33556677777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.022  Score=45.24  Aligned_cols=44  Identities=11%  Similarity=0.037  Sum_probs=24.6

Q ss_pred             cCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           79 LNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        79 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      +..+++++.|.+..+..     .......+.+.+...++|+.|+++++.
T Consensus        23 ~~~l~~l~~L~L~~~~i-----~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             HHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             HHhCCCCCEEEeCCCCC-----CHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            34456777777775531     111223444455556677777776653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.011  Score=40.75  Aligned_cols=54  Identities=22%  Similarity=0.219  Sum_probs=28.3

Q ss_pred             CCcccEEeeccCcccccccc------CCCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108          165 LADLRELFLVSCSKLQRTLL------EYLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK  220 (239)
Q Consensus       165 ~~~L~~L~l~~~~~L~~~~p------~~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~  220 (239)
                      +++|++|+++++ +++ .++      ..+|+|+.|++++..  .+.+ ..-...+|+++.+.+.+
T Consensus        64 ~~~L~~L~Ls~N-~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNN-RLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSS-CCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCc-ccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            566777777655 343 221      146677777776543  2222 11123456666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.0093  Score=47.49  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=59.5

Q ss_pred             ccCcEEeCCCCCCCccc--CccCCCCccCCccCceEeccCCCCCh----hhhcccccccceEEEEeccCCCChh-HHHHh
Q 037108            5 IKLHHLNNPSTDSLEEM--PQGIGKLTSLRTMCKFVVGNEIGSGL----RQLKSLIHLQGTVCISRLENVKEIS-AAKEA   77 (239)
Q Consensus         5 ~~Lr~L~l~~~~~~~~l--P~~i~~L~~L~~L~~~~~~~~~~~~i----~~L~~L~~L~~~L~~~~~~~~~~~~-~~~~~   77 (239)
                      .+|+.||++++ .++..  ..-+..++++++|++..+.- ....+    ..++..++|+ .|++.+.. +.+.. .....
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~~~L~-~LdLs~N~-i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALA-ELNLRSNE-LGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCC-EEECTTCC-CHHHHHHHHHH
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCC-CHHHHHHHHHHHhcCCCCC-EEECcCCc-CChHHHHHHHH
Confidence            36889999887 46542  23355677888887754431 11111    1245566666 66654321 11100 11122


Q ss_pred             ccCc-ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108           78 QLNG-KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG  127 (239)
Q Consensus        78 ~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  127 (239)
                      .+.. ..+|+.|+++.+..     .......+.+.+...++|+.|++.++.
T Consensus        78 ~l~~~~~~L~~L~L~~n~i-----t~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCL-----TGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCC-----BGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHhcCCCCCCEEECCCCCc-----cccccccccchhhcccccccccccccc
Confidence            2222 23677777764431     112233445566677788888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.30  E-value=0.037  Score=38.09  Aligned_cols=119  Identities=8%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccC--CCCChh-hhcccccccceEEEEeccCCCC-hhH
Q 037108            3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNE--IGSGLR-QLKSLIHLQGTVCISRLENVKE-ISA   73 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~--~~~~i~-~L~~L~~L~~~L~~~~~~~~~~-~~~   73 (239)
                      +-++|+.|+++++..++.     +-..+.+-++|++|++..+.-.  ....+. .+..-+.|+ .+.+.+.. +.. ...
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~-~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR-VLNVESNF-LTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC-EEECCSSB-CCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhccccc-ceeeehhh-cchHHHH
Confidence            457789999987533332     2234556677777766432211  011222 234444555 56554432 211 111


Q ss_pred             HHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEec
Q 037108           74 AKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKING  125 (239)
Q Consensus        74 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  125 (239)
                      .....+..-+.|++|+++.+....  ........+.+.+...+.|+.|.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~--~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSV--LGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCC--CCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCC--ccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            223345555667777776442110  00111233444444445666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.26  E-value=0.1  Score=35.53  Aligned_cols=119  Identities=12%  Similarity=0.029  Sum_probs=61.1

Q ss_pred             CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccCCCCChh----hhcccccccceEEEEeccCCCChhH
Q 037108            3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNEIGSGLR----QLKSLIHLQGTVCISRLENVKEISA   73 (239)
Q Consensus         3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~i~----~L~~L~~L~~~L~~~~~~~~~~~~~   73 (239)
                      +-++|++|+++++..++.     +=..+.+.++|++|++..+.- ......    -++..+.++ .+.+....-......
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l-~~~~~~~L~~~l~~~~~l~-~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLK-SLNVESNFISGSGIL   92 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCC-EEECCSSCCCHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc-cHHHHHHHHHHHhhcccch-hhhhccccccchhHH
Confidence            457899999987533332     223456778888887754321 111111    134445555 555433221111122


Q ss_pred             HHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc
Q 037108           74 AKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY  126 (239)
Q Consensus        74 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  126 (239)
                      .....+...++|+.+++..+...   ........+.+.+...+.|+.|++...
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~---i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQP---LGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSC---CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCc---CcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            23345666677877666532211   112223445555656678888887654