Citrus Sinensis ID: 037109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQVLPN
Secondary Structure (PSIPRED)
cEEEEEHHHHHHHHHHEEcccEEEEEccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHEEEccHHHHHHHccccccccccccccccccccccccHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
GIVGSGLMVTMTSWcvhirgplfvsvfTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWgkgkemkkqsqlvpaantskesesieisitspneeikelndsrkgdqvlpn
Flexible Loop (DISEMBL)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSqlvpaantskesesieisitspneeikelndsrkgdqvlpn
Low Complexity Region (SEG)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSvvavavaaSLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAANTskesesieisitspneeiKELNDSRKGDQVLPN
Disordered region (IsUnstruct)
****SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK*************************************************
Disordered Region (DISOPRED)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG**************************************************
Disordered Region (DISEMBL)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK**********************ISITSPNEEIK**************
Disordered Region (DISPRO)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK***********************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQVLPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
F4HVM3	356	WAT1-related protein At1g	yes	no	0.805	0.266	0.473	2e-19
Q4PT23	355	WAT1-related protein At1g	no	no	0.872	0.290	0.413	1e-17
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.847	0.243	0.4	3e-17
Q9LV20	383	WAT1-related protein At3g	no	no	0.771	0.237	0.446	3e-16
Q94JU2	367	WAT1-related protein At3g	no	no	0.923	0.297	0.413	2e-15
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.838	0.254	0.398	3e-15
Q9SUF1	384	WAT1-related protein At4g	no	no	0.881	0.270	0.376	3e-14
Q9LPF1	370	WAT1-related protein At1g	no	no	0.805	0.256	0.368	4e-14
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.932	0.289	0.358	5e-14
Q501F8	373	WAT1-related protein At4g	no	no	0.762	0.241	0.416	6e-14

>sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170 OS=Arabidopsis thaliana GN=At1g68170 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 63/95 (66%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
            I+ SG++V + +WC+  RGPLFVSVF+P+ +V VA+  S +LDE LHLGS++G  +IV 
Sbjct: 252 AILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSFLLDETLHLGSIIGTVIIVG 311

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEIS 95
            LY VLW K KEMK          T+K S+ I ++
Sbjct: 312 ALYIVLWAKNKEMKSMLTTSDHNETNKTSKDITVN 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG++V + +WC+  +GPLFV+VF+P+ +V VA+  S  L+E LHLGS++GA ++V 
Sbjct: 251 GIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSFALEEPLHLGSIIGAMIMVG 310

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEI-SITSPNEEI 103
           G+Y V+W K KE K  S       T+K ++ +++ +++S N ++
Sbjct: 311 GVYLVVWCKMKEKKSASTTSDHIETNKNNKELDLGNLSSVNRDV 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G V SG+  ++  WC+   GP+FV+V+ P+  +AVA+ AS+IL E+ +LG + GA LI+ 
Sbjct: 272 GFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIII 331

Query: 61  GLYAVLWGKGKE-----MKKQSQLVPAANTSKESESIEISITSPN 100
           GLY VLWGK +E     ++ +S +VP        +S  + I S N
Sbjct: 332 GLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLIINSSN 376

Pinus taeda (taxid: 3352)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 3/94 (3%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GI+ SGL+V + +WC++  GP+FV+VF PL  + VA  A LIL ++L+ G ++GA  I+ 
Sbjct: 279 GIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIML 338

Query: 61  GLYAVLWGKGKEMK---KQSQLVPAANTSKESES 91
           GLY VLWGK +E K   ++SQ  P + T    E+
Sbjct: 339 GLYLVLWGKNEERKLALEESQQDPESLTKHLLEA 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 7/116 (6%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLI-LDEKLHLGSVLGATLIV 59
           G+ GS +  T+ +W + I+GPLFV++F PLS+ A+AVA  +I L + L++GS++GAT+I 
Sbjct: 255 GLFGSCINNTIHTWALRIKGPLFVAMFKPLSI-AIAVAMGVIFLRDSLYIGSLIGATVIT 313

Query: 60  CGLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKE-LNDSRKGDQ 114
            G Y V+WGK KE+     LV   N +   E+ E  + SP+   K  L +S K D+
Sbjct: 314 IGFYTVMWGKAKEV----ALVEDDNKANHEEANEADLDSPSGSQKAPLLESYKNDE 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 9/108 (8%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG+   +  WC+   GP+FV+V+ P+  + VA+ AS+ L E+ +LG ++GA LI+ 
Sbjct: 273 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIA 332

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKE---------SESIEISITSP 99
           GLY VL+GK +E K  +    A  +S E           SI+ SIT+P
Sbjct: 333 GLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRNSIKSSITTP 380

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 5/109 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG+   +    +  RGP+FV+ F PL ++ VA+ AS IL E++H G V+G  +I  
Sbjct: 261 GIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAA 320

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDS 109
           GLY V+WGKGK+ +     V   +  +++   E+ IT+ +E+  +L  S
Sbjct: 321 GLYMVVWGKGKDYE-----VSGLDILEKNSLQELPITTKSEDDNKLVSS 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 8/103 (7%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G+V SG+   + S  +  RGP+F + F+P+ ++  A   +L+L EK+HLGS++GA  IV 
Sbjct: 257 GVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVL 316

Query: 61  GLYAVLWGKGKE--------MKKQSQLVPAANTSKESESIEIS 95
           GLY+V+WGK K+        +  +SQ +P  N  K++   ++S
Sbjct: 317 GLYSVVWGKSKDEVNPLDEKIVAKSQELPITNVVKQTNGHDVS 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 7/117 (5%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV S L   +    +  RGP+FV+ F+PL ++ VA+ +++I  E+++LG VLGA +I  
Sbjct: 260 GIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICA 319

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISIT---SPNEEIKELNDSRKGDQ 114
           GLY V+WGKGK+ K  S L        ES   ++ ++     N + + +  S++G+Q
Sbjct: 320 GLYLVIWGKGKDYKYNSTL----QLDDESAQPKLELSGNGKDNVDHEVITISKQGEQ 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G+V SG+   + S  +  RGP+F + F+P+ ++  A    L+L EK+HLGS++GA  IV 
Sbjct: 260 GVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVF 319

Query: 61  GLYAVLWGKGK------EMKKQSQLVPAANTSKESE 90
           GLY+V+WGK K      E K   Q +P  NTS + E
Sbjct: 320 GLYSVVWGKAKDEVISVEEKIGMQELPITNTSTKVE 355

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
357445679	392	Auxin-induced protein 5NG4 [Medicago tru	0.932	0.280	0.585	3e-30
388506670	389	unknown [Lotus japonicus]	0.822	0.249	0.653	5e-29
388513971	283	unknown [Lotus japonicus]	0.822	0.342	0.653	7e-29
449519553	384	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.283	0.570	7e-29
449467575	168	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.648	0.570	1e-28
357445673	394	Auxin-induced protein 5NG4 [Medicago tru	0.949	0.284	0.533	2e-28
356525918	405	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.269	0.561	5e-28
356557527	401	PREDICTED: auxin-induced protein 5NG4-li	0.923	0.271	0.543	6e-27
124360291	282	Integral membrane protein DUF6 containin	0.923	0.386	0.527	6e-27
357445547	430	Auxin-induced protein 5NG4 [Medicago tru	0.915	0.251	0.532	7e-27

>gi|357445679|ref|XP_003593117.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482165|gb|AES63368.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG MV + SWCVH+RGPLF SVFTPL ++ VA+A   IL+EKLHLGS++GA LIVC
Sbjct: 263 GIVVSGAMVAVISWCVHMRGPLFASVFTPLMLLMVALAGCTILNEKLHLGSIIGAVLIVC 322

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRK 111
           GLYAV+WGK KEMKK++QLVP+ N   E + +EI + S  ++   LN++ +
Sbjct: 323 GLYAVVWGKSKEMKKKNQLVPSKN-PHEFDPVEIVVRSIEKDKSNLNNNNQ 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506670|gb|AFK41401.1| unknown [Lotus japonicus]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SGL+V M S+CV +RGPLF S+F PL ++ VA+AA L+LDEKL+LGSVLGA LIVC
Sbjct: 267 GIVASGLVVIMISYCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLGAGLIVC 326

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITS 98
           GLY VLWGK KEMKK++QL+P  NT K+ E  EI++ S
Sbjct: 327 GLYTVLWGKSKEMKKKTQLIPLENT-KQPEVTEIAVMS 363

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513971|gb|AFK45047.1| unknown [Lotus japonicus]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 1/98 (1%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SGL+V M S+CV +RGPLF S+F PL ++ VA+AA L+LDEKL+LGSVLGA LIVC
Sbjct: 161 GIVASGLVVIMISYCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLGAGLIVC 220

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITS 98
           GLY VLWGK KEMKK++QL+P  NT K+ E  EI++ S
Sbjct: 221 GLYTVLWGKSKEMKKKTQLIPLENT-KQPEVTEIAVMS 257

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519553|ref|XP_004166799.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 86/114 (75%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIVGSG MVT+ +WCV +RGPL+VSVF+PL ++ VA+A SL LDEKLHLGSV+GA LIVC
Sbjct: 268 GIVGSGAMVTVMAWCVRMRGPLYVSVFSPLMLLIVAIAGSLFLDEKLHLGSVVGAMLIVC 327

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPN----EEIKELNDSR 110
           GLY VLWGK KEM K  QL P+ +   + E  +I++T+PN      I+++N ++
Sbjct: 328 GLYMVLWGKSKEMNKCLQLTPSESIG-QLELKDIAVTTPNPLNETHIQDINANK 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467575|ref|XP_004151498.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 86/114 (75%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIVGSG MVT+ +WCV +RGPL+VSVF+PL ++ VA+A SL LDEKLHLGSV+GA LIVC
Sbjct: 52  GIVGSGAMVTVMAWCVRMRGPLYVSVFSPLMLLIVAIAGSLFLDEKLHLGSVVGAMLIVC 111

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPN----EEIKELNDSR 110
           GLY VLWGK KEM K  QL P+ +   + E  +I++T+PN      I+++N ++
Sbjct: 112 GLYMVLWGKSKEMNKCLQLTPSESIG-QLELKDIAVTTPNPLNETHIQDINANK 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445673|ref|XP_003593114.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482162|gb|AES63365.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 89/118 (75%), Gaps = 6/118 (5%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G+V SGL+V +TSWC+ +RGPLF SVF PL ++ V + ASL+LDEKL+LGS +GA LIVC
Sbjct: 267 GVVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASLMLDEKLYLGSAIGAVLIVC 326

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSP-----NEEIKELNDSRKGD 113
           GLY VLWGK KEMK+ +QLVP+ NT +E+E+I++ + S      ++++   N S+ G+
Sbjct: 327 GLYMVLWGKSKEMKRIAQLVPSKNT-QEAEAIQVVVMSTPMVDDHDKLHVDNLSKNGE 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525918|ref|XP_003531568.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 85/114 (74%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG++V +T+WC+ +RGPLF SVF PL +V VA+A SL+L+E L++GSV+GA LIVC
Sbjct: 270 GIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVC 329

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQ 114
           GLY VLWGK KEMK  +QLVP + T +E+E+IE+ + S +  I    D  K DQ
Sbjct: 330 GLYMVLWGKSKEMKNITQLVP-SETIREAEAIEVVVMSISTPI----DYEKCDQ 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557527|ref|XP_003547067.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 5/114 (4%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG++V +T+WC+ +RGPLF SVF PL +V VA+  SL+L+E L++GSV+GA LIVC
Sbjct: 267 GIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAITGSLMLNENLYVGSVVGAVLIVC 326

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGDQ 114
           GLY VLWGK KEMK  +QLVP + T +E+E+IE+ +   +  I    D  K DQ
Sbjct: 327 GLYMVLWGKSKEMKNITQLVP-SETIREAEAIEVVVMPMSTPI----DYEKCDQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360291|gb|ABN08304.1| Integral membrane protein DUF6 containing protein [Medicago truncatula]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG MV + SWCVH+RGPLF S F PL +V VA+A+  +L+E L+LGS++G+ LIVC
Sbjct: 141 GIVASGAMVVVISWCVHMRGPLFASAFNPLVLVIVALASCTMLNENLYLGSIIGSVLIVC 200

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSR 110
           GLYAV+WGK KEMKK +QLVP + +S E +++EI +    ++ +  N + 
Sbjct: 201 GLYAVVWGKSKEMKKNNQLVP-SQSSNEFDTVEIVVRHVVDDKRNHNSNN 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445547|ref|XP_003593051.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482099|gb|AES63302.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           GIV SG MV + SWCVH+RGPLF S F PL +V VA+A+  +L+E L+LGS++G+ LIVC
Sbjct: 289 GIVASGAMVVVISWCVHMRGPLFASAFNPLVLVIVALASCTMLNENLYLGSIIGSVLIVC 348

Query: 61  GLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDS 109
           GLYAV+WGK KEMKK +QLVP + +S E +++EI +    ++ +  N +
Sbjct: 349 GLYAVVWGKSKEMKKNNQLVP-SQSSNEFDTVEIVVRHVVDDKRNHNSN 396

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2199327	356	UMAMIT23 "Usually multiple aci	0.618	0.205	0.520	1.9e-16
TAIR|locus:2032960	355	UMAMIT24 "Usually multiple aci	0.652	0.216	0.467	5.6e-15
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.720	0.221	0.431	9.5e-15
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.686	0.197	0.395	4e-13
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.661	0.208	0.410	4e-13
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.627	0.206	0.418	9.9e-13
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.618	0.198	0.424	1.1e-12
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.627	0.190	0.418	2.6e-12
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.610	0.194	0.430	4.9e-12
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.618	0.215	0.472	6.4e-12

TAIR|locus:2199327 UMAMIT23 "Usually multiple acids move in and out Transporters 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 38/73 (52%), Positives = 50/73 (68%)

Query:     2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVCG 61
             I+ SG++V + +WC+  RGPLFVSVF+P+         S +LDE LHLGS++G  +IV  
Sbjct:   253 ILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSFLLDETLHLGSIIGTVIIVGA 312

Query:    62 LYAVLWGKGKEMK 74
             LY VLW K KEMK
Sbjct:   313 LYIVLWAKNKEMK 325

GO:0016020 "membrane" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2032960 UMAMIT24 "Usually multiple acids move in and out Transporters 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 5.6e-15, P = 5.6e-15
 Identities = 36/77 (46%), Positives = 52/77 (67%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             GIV SG++V + +WC+  +GPLFV+VF+P+         S  L+E LHLGS++GA ++V 
Sbjct:   251 GIVVSGMVVPLVAWCIATKGPLFVTVFSPIRLVIVALIGSFALEEPLHLGSIIGAMIMVG 310

Query:    61 GLYAVLWGKGKEMKKQS 77
             G+Y V+W K KE K  S
Sbjct:   311 GVYLVVWCKMKEKKSAS 327

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 38/88 (43%), Positives = 56/88 (63%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             GI+ SGL+V + +WC++  GP+FV+VF PL          LIL ++L+ G ++GA  I+ 
Sbjct:   279 GIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIML 338

Query:    61 GLYAVLWGKGKEMK---KQSQLVPAANT 85
             GLY VLWGK +E K   ++SQ  P + T
Sbjct:   339 GLYLVLWGKNEERKLALEESQQDPESLT 366

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 179 (68.1 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             G V SG+  ++  WC+   GP+FV+V+ P+         S+IL E+ +LG + GA LI+ 
Sbjct:   272 GFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIII 331

Query:    61 GLYAVLWGKGKE-----MKKQSQLVP 81
             GLY VLWGK +E     ++ +S +VP
Sbjct:   332 GLYLVLWGKSEEKRLGLLQAKSSMVP 357

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 32/78 (41%), Positives = 50/78 (64%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             G+V S L   + SW +  +GPL+VSVF+PL           +L+EKL+ G+ +G+ L+V 
Sbjct:   258 GVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYTGTFMGSALVVI 317

Query:    61 GLYAVLWGKGKEMKKQSQ 78
             GLY VLWGK +E+ ++ +
Sbjct:   318 GLYGVLWGKDREVSEKEE 335

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 31/74 (41%), Positives = 48/74 (64%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             G + +G+   + SW +  RGP+F+S+FTPLS        +++L E + LGS++G  L++ 
Sbjct:   261 GFIVTGVAYYLQSWVIEKRGPVFLSMFTPLSLLFTLLSSAILLCEIISLGSIVGGLLLII 320

Query:    61 GLYAVLWGKGKEMK 74
             GLY VLWGK +E K
Sbjct:   321 GLYCVLWGKSREEK 334

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 31/73 (42%), Positives = 48/73 (65%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             G+ GS +  T+ +W + I+GPLFV++F PLS         + L + L++GS++GAT+I  
Sbjct:   255 GLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGATVITI 314

Query:    61 GLYAVLWGKGKEM 73
             G Y V+WGK KE+
Sbjct:   315 GFYTVMWGKAKEV 327

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 31/74 (41%), Positives = 46/74 (62%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             GIV SG+   +  WC+   GP+FV+V+ P+         S+ L E+ +LG ++GA LI+ 
Sbjct:   273 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIA 332

Query:    61 GLYAVLWGKGKEMK 74
             GLY VL+GK +E K
Sbjct:   333 GLYFVLYGKSEERK 346

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 31/72 (43%), Positives = 47/72 (65%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             G+V SG+   + S  +  RGP+F + F+P+         +L+L EK+HLGS++GA  IV 
Sbjct:   257 GVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVL 316

Query:    61 GLYAVLWGKGKE 72
             GLY+V+WGK K+
Sbjct:   317 GLYSVVWGKSKD 328

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 35/74 (47%), Positives = 44/74 (59%)

Query:     1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSXXXXXXXXSLILDEKLHLGSVLGATLIVC 60
             GI+ SG  V  T W V  +GP+++S+F PLS         + L E L+LGSV+G  LI  
Sbjct:   244 GILNSGYYVIHT-WAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVMGGILISI 302

Query:    61 GLYAVLWGKGKEMK 74
             G Y VLWGK KE K
Sbjct:   303 GFYMVLWGKAKEDK 316

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: N21L7 mtn21-like protein (376 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-13
pfam00892	126	pfam00892, EamA, EamA-like transporter family	5e-05
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 28/64 (43%), Positives = 43/64 (67%)

Query: 13  SWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72
           SW V  +GPL++++F PLS++   V  ++ L++ L+LG ++G  LI  G YAV+WGK  E
Sbjct: 274 SWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333

Query: 73  MKKQ 76
            K Q
Sbjct: 334 EKDQ 337

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G+ G+ L   +  + +        SV T LS V   + + L+L EKL L  +LG  LI+ 
Sbjct: 60  GLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILL 119

Query: 61  GLYAVLW 67
           G+  +L 
Sbjct: 120 GVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 33/72 (45%)

Query: 1   GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60
           G+  +GL   +  + + + G   V++ + L  V  A+   L+L E L    +LGA L+V 
Sbjct: 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVL 280

Query: 61  GLYAVLWGKGKE 72
           G+        + 
Sbjct: 281 GVLLASLRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PLN00411	358	nodulin MtN21 family protein; Provisional	99.7
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.49
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.44
PRK11689	295	aromatic amino acid exporter; Provisional	99.43
PRK11272	292	putative DMT superfamily transporter inner membran	99.35
PRK15430	296	putative chloramphenical resistance permease RarD;	99.2
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.19
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.18
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.14
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.13
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.07
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.89
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.77
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.67
COG2510	140	Predicted membrane protein [Function unknown]	98.65
PRK15430	296	putative chloramphenical resistance permease RarD;	98.46
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.46
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.46
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.44
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.39
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.32
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.18
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.05
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.04
PLN00411	358	nodulin MtN21 family protein; Provisional	98.02
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.02
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.99
PRK11272	292	putative DMT superfamily transporter inner membran	97.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.75
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.72
COG2076	106	EmrE Membrane transporters of cations and cationic	97.71
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.69
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.69
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.69
PRK11689	295	aromatic amino acid exporter; Provisional	97.66
PRK11431	105	multidrug efflux system protein; Provisional	97.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.51
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.45
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.41
COG2962	293	RarD Predicted permeases [General function predict	97.14
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.14
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.13
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.88
COG2962	293	RarD Predicted permeases [General function predict	96.86
KOG1580	337	consensus UDP-galactose transporter related protei	96.69
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.62
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.07
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.72
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.68
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.25
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.2
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.18
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	93.88
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	93.88
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	93.73
KOG1581	327	consensus UDP-galactose transporter related protei	93.4
KOG2765	416	consensus Predicted membrane protein [Function unk	93.15
PRK10532	293	threonine and homoserine efflux system; Provisiona	92.77
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	92.66
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	91.43
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	91.25
KOG1582	367	consensus UDP-galactose transporter related protei	91.15
COG3086	150	RseC Positive regulator of sigma E activity [Signa	91.08
PRK13499	345	rhamnose-proton symporter; Provisional	90.71
KOG2765	416	consensus Predicted membrane protein [Function unk	90.13
PF04246	135	RseC_MucC: Positive regulator of sigma(E), RseC/Mu	87.57
KOG3912	372	consensus Predicted integral membrane protein [Gen	87.19
KOG2922	335	consensus Uncharacterized conserved protein [Funct	86.81
PF11118	77	DUF2627: Protein of unknown function (DUF2627); In	86.39
PRK10862	154	SoxR reducing system protein RseC; Provisional	86.38
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	85.73
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	84.9
PRK02237	109	hypothetical protein; Provisional	83.48
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	83.32
KOG1443	349	consensus Predicted integral membrane protein [Fun	82.91
PRK13499	345	rhamnose-proton symporter; Provisional	81.48
PRK13108	460	prolipoprotein diacylglyceryl transferase; Reviewe	80.1
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	80.1

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.70  E-value=2.3e-17  Score=136.13  Aligned_cols=71  Identities=38%  Similarity=0.832  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      ++.++|.+|+|+++++||+++|+|.+++|++++++|+++|||++++.+++|+++|+.|+++++|+++||.+
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            36689999999999999999999999999999999999999999999999999999999999997766644

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.49  E-value=4.1e-14  Score=112.05  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      |+++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||++++.+++|+++|++|++...+..+|+.|
T Consensus       215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~  288 (293)
T PRK10532        215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK  288 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999998877655443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.44  E-value=1.4e-13  Score=109.06  Aligned_cols=70  Identities=27%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      |+++|+++|.+|++++++.+|++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..|+++
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            4689999999999999999999999999999999999999999999999999999999999999988765

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.43  E-value=2e-13  Score=108.26  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      ++|+++|.+|++++++.||++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+..+
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            47899999999999999999999999999999999999999999999999999999999999876554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.35  E-value=1.3e-12  Score=103.33  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK   71 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k   71 (118)
                      |+++|+++|.+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.++|
T Consensus       219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999999999999999999999999999999998876543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.20  E-value=2.9e-11  Score=95.88  Aligned_cols=64  Identities=9%  Similarity=-0.019  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      +|.++|.+|++++++.||+++|.+.+++|++++++|++++||++++.+++|+++|+.|+.+...
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999888776553

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.19  E-value=5.5e-11  Score=80.13  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=62.7

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      |++++++++.+|++++++.+++.++.+.+++|++++++++++++|++++.+++|.++++.|++++.
T Consensus        60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   60 GLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.18  E-value=3.1e-11  Score=94.83  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=60.8

Q ss_pred             eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109            2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA   64 (118)
Q Consensus         2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l   64 (118)
                      .++|+++|.+|++++++.|+++++.+.+++|++++++|++++||+++..+++|+++|+.|+++
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            467899999999999999999999999999999999999999999999999999999999986

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.14  E-value=1e-10  Score=84.92  Aligned_cols=71  Identities=23%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHH--HhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASL--ILDEKLHLGSVLGATLIVCGLYAVLWGKGK   71 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l--~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k   71 (118)
                      |+++++++|.+|++++++.+++.+.-+..+.+++..++++.  ++||++++.+++|.++|++|++++.++++|
T Consensus        54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            46789999999999999999999999999999989888885  899999999999999999999998876554

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.13  E-value=2.8e-11  Score=95.60  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             hHHHHHHHH----HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109            5 SGLMVTMTS----WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         5 S~iay~l~~----~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      +..++.+|+    +++++.||++++++.++.|++++++|++++||++++.+++|+++++.|+++.++.|.|+
T Consensus       227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            334555444    79999999999999999999999999999999999999999999999999998765443

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.07  E-value=1.5e-10  Score=88.32  Aligned_cols=62  Identities=23%  Similarity=0.391  Sum_probs=59.5

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHH
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGL   62 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv   62 (118)
                      |+++++++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            35689999999999999999999999999999999999999999999999999999999986

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.93  E-value=2.4e-09  Score=81.06  Aligned_cols=68  Identities=26%  Similarity=0.435  Sum_probs=64.6

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      |+++++++|.+|++++++.+++.++.+.++.|++++++++++++|+++..+++|+++++.|+.+....
T Consensus       221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            45678899999999999999999999999999999999999999999999999999999999998876

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.89  E-value=2.7e-09  Score=87.34  Aligned_cols=67  Identities=19%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             eehhHHHHHHHHH----HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            2 IVGSGLMVTMTSW----CVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         2 I~~S~iay~l~~~----ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +++++++|.+||+    ++++++|...+++.++.|++++++|++++||++++.+++|+++++.|+++.++.
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            4578999999995    999999999999999999999999999999999999999999999999997754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.77  E-value=2.1e-08  Score=69.62  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK   71 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k   71 (118)
                      +...++.+|.++++..++ .++....+.|++++++|+++++|+++...++|.+++++|+.+..+....
T Consensus        44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            345789999999999995 8889999999999999999999999999999999999999999887543

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.67  E-value=6.1e-08  Score=68.39  Aligned_cols=64  Identities=17%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      ++-++++++|.+++++.+.+.+.....+.+++++++|++++||++++.+++|.++|++|+.+.-
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4557789999999999999999999999999999999999999999999999999999998754

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.65  E-value=2.5e-08  Score=73.75  Aligned_cols=64  Identities=27%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      ++++++..+|+++++.-.++++.-.--+.|+++++++++||||+++..+++|.++|.+|..++.
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            4688999999999999999999999999999999999999999999999999999999987654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.46  E-value=3.5e-07  Score=72.59  Aligned_cols=65  Identities=23%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      ++.++.+.+|++++++.+++.+++..+..|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999998754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.46  E-value=3.5e-07  Score=69.78  Aligned_cols=66  Identities=17%  Similarity=0.084  Sum_probs=60.9

Q ss_pred             eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      .++..+.+.++++++++.+++.+++...+.|++++++++++++|++++.+++|.++.+.|+.+...
T Consensus        54 ~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        54 ALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            345677888999999999999999999999999999999999999999999999999999988754

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.46  E-value=2.2e-07  Score=74.24  Aligned_cols=66  Identities=20%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             eehhHHHHHHHHHHHh-hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhh----hhHHHHHHHHHHHHhc
Q 037109            2 IVGSGLMVTMTSWCVH-IRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIVCGLYAVLWG   68 (118)
Q Consensus         2 I~~S~iay~l~~~ai~-~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~   68 (118)
                      ++ ++++|.+|.++.+ +.+++.++....++|+++++++++++||..+..++    +|+++|+.|+.+....
T Consensus       219 i~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       219 LM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            45 7899999999999 99999999999999999999999999999999999    9999999999886543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.44  E-value=2.1e-07  Score=75.59  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      |+++|++-|.+=..+++++++..-++.+.++|.++++.|+++|||.+++.|++|.+.|+.+..=+.+..+|...
T Consensus       216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~  289 (292)
T COG5006         216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV  289 (292)
T ss_pred             HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999998877776555433

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.39  E-value=7.7e-07  Score=69.91  Aligned_cols=65  Identities=23%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +..+.+.++++++++.+++.++.+.+..|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            35677888899999999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=98.32  E-value=1.6e-06  Score=66.95  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      .++.+.++++++++.++..+++..+..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999987643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.18  E-value=7.3e-06  Score=59.18  Aligned_cols=68  Identities=21%  Similarity=0.284  Sum_probs=58.4

Q ss_pred             ehhHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as-~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      ++-+++|+++.+++++++-+.+= ++.-+--+.++++|++++||++++.+++|.++|++|+...+...+
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            34567899999999998887763 445688899999999999999999999999999999999876654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.05  E-value=9.7e-06  Score=64.09  Aligned_cols=62  Identities=11%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      .++.+.++|+++++.+++.+++...+.|++++++++++++|+++..+++|.++.++|+.+..
T Consensus        75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            35667899999999999999999999999999999999999999999999999999998753

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.04  E-value=9.8e-06  Score=61.32  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHH-HHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109            2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAAS-LILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~-l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      .+.....+.+|+.++++.++..++...+..|++.+++++ ++++|+++...++|.++.+.|++++.+.....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            345677889999999999999999999999999999997 77799999999999999999999988765543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.02  E-value=1.1e-05  Score=66.97  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH------hCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLI------LDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~------LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +.+.+++++++..+|+.+++..+..|+++++++++|      ++|+++..+++|.++-++|+.+....
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            345589999999999999999999999999999999      69999999999999999999987653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.02  E-value=2.5e-05  Score=55.45  Aligned_cols=67  Identities=10%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             ehhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      ++-+++|+++..++++++-+.+ +++.-+.-+.++++|+++++|++++.+++|.++|++|+.+.+...
T Consensus        38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3456789999999999887765 455667889999999999999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.99  E-value=1.4e-05  Score=63.38  Aligned_cols=61  Identities=11%  Similarity=0.167  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhh-cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            8 MVTMTSWCVHI-RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         8 ay~l~~~ai~~-~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      .+.+++.++++ .++..+++..++.|+++.++++++++|+++..+++|.++.++|+++..++
T Consensus        72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            34456677776 57789999999999999999999999999999999999999999987754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.93  E-value=1.9e-05  Score=62.46  Aligned_cols=62  Identities=11%  Similarity=0.022  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHH-hhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            6 GLMVTMTSWCV-HIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         6 ~iay~l~~~ai-~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      ++.+.+++++. +..++..+++..++.|+++++++++ ++|+++..+++|.++.++|+++..+.
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            45677888998 8999999999999999999999986 69999999999999999999988754

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.89  E-value=2.6e-05  Score=63.94  Aligned_cols=60  Identities=20%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            8 MVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         8 ay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      .+...+++++..+++.+++...+.|++++++++++++|+++...++|.+++++|+++...
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            466677999999999999999999999999999999999999999999999999998653

>TIGR00688 rarD rarD protein

Probab=97.75  E-value=2.5e-05  Score=60.26  Aligned_cols=39  Identities=5%  Similarity=0.009  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLI   42 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~   42 (118)
                      .|+++|.+|++++++.+|++++.+.|++|++++++|++.
T Consensus       217 ~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       217 ITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            488999999999999999999999999999999999875

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.72  E-value=7.2e-05  Score=52.92  Aligned_cols=57  Identities=16%  Similarity=0.265  Sum_probs=53.0

Q ss_pred             HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109           10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus        10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      ...++++++.+|...++...+-.++..++|++++||++++.+++|.++.+.|.++.+
T Consensus        96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            345589999999999999999999999999999999999999999999999998754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.00015  Score=51.61  Aligned_cols=67  Identities=27%  Similarity=0.424  Sum_probs=58.1

Q ss_pred             ehhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      ++-+++|++..+++++++-..+ +++.-+-.+.+++.|+++++|++++..++|.+++++|+...++..
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            3456889999999999876554 677888889999999999999999999999999999999887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.69  E-value=0.00013  Score=58.20  Aligned_cols=69  Identities=16%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      +..++-...++.+++.||...++...+--+++.++++++.|+++++.+++|.++++.|+.+..+.++|+
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            455666677789999999999999999999999999999999999999999999999999988877654

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.69  E-value=7.5e-05  Score=61.99  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      +..+-|.+....++..+|+...+-+.....+++++++++.|+.+++..++|.++|+.|+.+....+.++.+
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            44566778889999999999999999999999999999999999999999999999999998877655444

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.69  E-value=0.00016  Score=51.46  Aligned_cols=63  Identities=13%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      +-+++|++...++++++...+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            446789999999999887655 667778889999999999999999999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.66  E-value=0.00011  Score=58.29  Aligned_cols=59  Identities=20%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             HHHHHHHh----hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109           10 TMTSWCVH----IRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus        10 ~l~~~ai~----~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      .+++++++    ..++..+++..++.|++++++++++++|+++..+++|.++-++|+++....
T Consensus        76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            33445554    457788899999999999999999999999999999999999999887654

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.65  E-value=0.00023  Score=50.26  Aligned_cols=65  Identities=18%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +-+++|++...++++++...+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+..
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            456788999999998887655 67777888999999999999999999999999999999987543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.51  E-value=5.9e-05  Score=62.28  Aligned_cols=64  Identities=17%  Similarity=0.059  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      .+..+.+++.++..-+-+.+..+..|+++++++|++|+|+.+....+|..+.+.|+.+..+.+.
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence            3556778899999999999999999999999999999999999999999999999999777664

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.45  E-value=0.00034  Score=47.64  Aligned_cols=55  Identities=29%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHH
Q 037109            4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI   58 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lI   58 (118)
                      +=+++++++.+++++++.+.+ +++.-+..+..++.|++++||++++.+++|..+|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            446889999999999998888 6777799999999999999999999999998876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00803 nst UDP-galactose transporter

Probab=97.41  E-value=4e-05  Score=58.29  Aligned_cols=61  Identities=20%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA   64 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l   64 (118)
                      ..++...+-.|.+++.|+...++...+.++++++++++++|++++..+++|+.+++.|+++
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3455566678999999999999999999999999999999999999999999999999764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.14  E-value=0.0013  Score=54.05  Aligned_cols=70  Identities=9%  Similarity=-0.031  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEM   73 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~   73 (118)
                      .|++...+|..+-+++.=+..+...|++|..-.++|++++||+++..+++..++|-.|+.+..+..-++.
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~  289 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA  289 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999999999999999999999999999999999887764433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.14  E-value=0.00067  Score=54.21  Aligned_cols=62  Identities=15%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhcCccchhhhhh-hHHHHHHHHHHHHhCccchhhh----hhhHHHHHHHHHHHHhc
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTP-LSVVAVAVAASLILDEKLHLGS----VLGATLIVCGLYAVLWG   68 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~-L~PV~a~ilg~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~   68 (118)
                      ++...|..++++.|.+.+-.+.+ +.+++.++++.+++||..+..+    ++|.++++.|++++...
T Consensus        71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            34488999999999999988888 9999999999999999999999    99999999999887444

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.13  E-value=0.0012  Score=52.10  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109           10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus        10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      .+++.++++++|+.--+...+..++++++++++|+.+++..|+++.+++..|+.+++......
T Consensus        32 ~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   32 NLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            556689999999999999999999999999999999999999999999999999998876554

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.88  E-value=0.0023  Score=51.02  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      ...++-.+.++++++++-..-.++-...|++.+++++++++++.+..++++.+++.+|+.++.....+..+
T Consensus        73 ~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   73 LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            34567788999999999999999999999999999999999999999999999999999998877654444

; GO: 0055085 transmembrane transport

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.86  E-value=0.0018  Score=53.29  Aligned_cols=63  Identities=19%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      +-..+|.|++.+--..-+|+=+++.|++.+++|.+||+|+++..|++..++-.+|+..-.|..
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            456788999999999999999999999999999999999999999999999999998766654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.0066  Score=49.76  Aligned_cols=64  Identities=23%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      ++|+++-++-+..+..-||-..|+...---.|+++.++++++.+++..|++|.++++.++.+=.
T Consensus       249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            4688888889999999999999999999999999999999999999999999999999988633

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.62  E-value=0.0038  Score=51.93  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            6 GLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         6 ~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      +.|-++++.+.+...-+-+.+.....-++++++++++|+++.++.|++|.++.++|+.++.+...
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            34667888999999999999999999999999999999999999999999999999998877653

Some of the sequences in this family are annotated as putative membrane proteins.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.07  E-value=0.0089  Score=42.93  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109            7 LMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV   65 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~   65 (118)
                      .+..+|++.+++.+-+.+.-. +.+.=+|+++.|+++.+|..+...++|+++|+.|+.++
T Consensus        53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            456778888998888777666 57888999999988888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.72  E-value=0.0078  Score=49.03  Aligned_cols=63  Identities=25%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      -+++..+...+....+++.++-+..+.-++.++++..+|+|+++...++|.++++.|..+.-.
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            355566777778878888888888888899999999999999999999999999999987543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.68  E-value=0.0015  Score=54.09  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             HHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109           12 TSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus        12 ~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      .++++.+.+|..-++...+--++.++.|++++++++++.+..|.++-+.|+++..+.+.++++
T Consensus       252 ~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  252 AFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            458899999999999999999999999999999999999999999999999999988776655

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.25  E-value=0.057  Score=45.47  Aligned_cols=60  Identities=18%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109           11 MTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus        11 l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      +++.+..+++|+.-.+.+.+--+.++++++++|+++++..|+...++.++|+.++++...
T Consensus       108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen  108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence            455788899999999999999999999999999999999999999999999999995543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.20  E-value=0.019  Score=47.73  Aligned_cols=62  Identities=18%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL   66 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~   66 (118)
                      +.++-.+-+.++++=-|..+|+..+..-++|.++-++|+|+..+++++.|+++|+.....+-
T Consensus       263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence            34556677889999899999999999999999999999999999999999999998876544

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.18  E-value=0.065  Score=43.60  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhcCccchhhhh-hhHHHHHHHHHHHHhCccchhhhhh----hHHHHHHHHHHHHhccchhhh
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFT-PLSVVAVAVAASLILDEKLHLGSVL----GATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~-~L~PV~a~ilg~l~LgE~lt~~~ii----G~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      ++-..|+++.++.|-+++.=.. -++-|.++++|++++||.-+..+.+    +.++|+.|+++..+..+++.+
T Consensus        57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            4556788999999998876444 5667778999999999987766544    778999999998887665554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=0.12  Score=37.13  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             HHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109           36 AVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus        36 ~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      +.++++.|+|++.|.++.|++++++|+++..+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            67899999999999999999999999998754

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=93.88  E-value=0.082  Score=44.02  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH--hccch
Q 037109           19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL--WGKGK   71 (118)
Q Consensus        19 ~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~--~~~~k   71 (118)
                      ..+-.+++...+--.+..+++++.+..++++++++|+++++.|-++..  |.+.|
T Consensus       266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            455667788888999999999999999999999999999999988754  66555

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=93.73  E-value=0.057  Score=38.68  Aligned_cols=30  Identities=20%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             HHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109           36 AVAASLILDEKLHLGSVLGATLIVCGLYAV   65 (118)
Q Consensus        36 ~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~   65 (118)
                      +.+++++++|++++.++.|.+++++++|++
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            678899999999999999999999998864

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.40  E-value=0.061  Score=44.92  Aligned_cols=66  Identities=11%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      |.+++-.+-++-+++-||..-++.+..--+++++++.+..|.++++-|++|..+++.|+++-..-+
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k  315 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK  315 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence            455566666788999999999999999999999999999999999999999999999999855433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.15  E-value=0.13  Score=44.13  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=64.6

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhh
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEM   73 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~   73 (118)
                      +.++|+++=++|.|++-...|..+.+-+.+.-=.|++...++=|-.+++..++|.+.|++|.+.++.......
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~  396 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK  396 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence            3567899999999999999999999888888778899999999999999999999999999999887654433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=92.77  E-value=0.2  Score=39.69  Aligned_cols=57  Identities=19%  Similarity=0.068  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW   67 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~   67 (118)
                      .++.+.++++++++.++..+++..+..|+++++++.    |+...  ..+.++.++|+++..+
T Consensus        81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence            355677889999999999999999999999998873    55443  4556777888887543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=92.66  E-value=0.3  Score=41.17  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109            9 VTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         9 y~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      -.+-.+.+++.+-..=+....+..+++++.++.+++-.++....+|..+++..+++....+.++
T Consensus       264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            3444566666676666777778999999999999999999999999999999999988666655

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=91.43  E-value=0.35  Score=39.37  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhh----hhhHHHHHHHHH
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGS----VLGATLIVCGLY   63 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~----iiG~~lIl~Gv~   63 (118)
                      ++-..+..+.++.|.+.+-.+.-+.++++++.|.++|||.-+..+    ++|.++|+.|..
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            455667889999999999999999999999999999999988664    457777766654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=91.25  E-value=0.13  Score=41.34  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            8 MVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         8 ay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +-++|..+++++.|+-++....-..-|.-+++|+.||+++....++.+++-+.|+.+..+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            4578999999999999999999999999999999999999999999999999998765443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.15  E-value=0.81  Score=38.39  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109           14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus        14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      -.++.-|+..+++....---++.+++++++..++|..+.-|+.+++.|+|+-..++
T Consensus       279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            45667799999999999999999999999999999999999999999999977665

>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]

Probab=91.08  E-value=0.36  Score=36.39  Aligned_cols=28  Identities=4%  Similarity=0.036  Sum_probs=21.9

Q ss_pred             HHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037109           15 CVHIRGPLFVSVFTPLSVVAVAVAASLI   42 (118)
Q Consensus        15 ai~~~Gp~~as~~~~L~PV~a~ilg~l~   42 (118)
                      ++...+..++|+..|+.|+++.+++.++
T Consensus        68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L   95 (150)
T COG3086          68 GIEEKSLLKSALLVYIFPLVGLFLGAIL   95 (150)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677889999999999997776554

>PRK13499 rhamnose-proton symporter; Provisional

Probab=90.71  E-value=0.78  Score=38.54  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccc-------hhhhhhhHHHHHHHHHHHHhccchh
Q 037109            7 LMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKL-------HLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~l-------t~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      ++-..|..+++++|-+.+ ++..-+.-+++++++.+++||--       ....++|.+++++|+.+..+.-.++
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            445667788888887765 45566788889999999999754       2446788899999999988854333

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=90.13  E-value=0.19  Score=43.25  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109            7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE   72 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~   72 (118)
                      +|-+.+|-+++....+-..+.....-+|+..+|.+|.+|++++.-+++.++-++|+.++..+..++
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            355667788888888888888899999999999999999999999999999999999988775544

>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC

Probab=87.57  E-value=0.92  Score=32.37  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=19.3

Q ss_pred             CccchhhhhhhHHHHHHHHHHHHh
Q 037109           20 GPLFVSVFTPLSVVAVAVAASLIL   43 (118)
Q Consensus        20 Gp~~as~~~~L~PV~a~ilg~l~L   43 (118)
                      ...+++++.|+.|+++.+++.++.
T Consensus        66 ~~~~aa~l~Y~lPll~li~g~~l~   89 (135)
T PF04246_consen   66 SLLKAAFLVYLLPLLALIAGAVLG   89 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445789999999999988886643

The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=87.19  E-value=0.9  Score=38.24  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      -+.+-.+.+.++....++---+.=--.-+|+.+++.-||+.+++..|++|...+..|+..+-..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3456667777777766665555555678999999999999999999999999999999876543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.81  E-value=0.096  Score=43.96  Aligned_cols=56  Identities=34%  Similarity=0.430  Sum_probs=44.1

Q ss_pred             cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109           19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK   74 (118)
Q Consensus        19 ~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~   74 (118)
                      -+++.++-.-.+.-++.++++..+|+|.+++...+|+++.++|-++.-...+++++
T Consensus        88 APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen   88 APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            35556666667788999999999999999999999999999997765544444433

>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function

Probab=86.39  E-value=1.5  Score=29.78  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=40.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHhCccchh-----------hhhhhHHHHHHHHHHHH-hccchhhhhhhccC
Q 037109           23 FVSVFTPLSVVAVAVAASLILDEKLHL-----------GSVLGATLIVCGLYAVL-WGKGKEMKKQSQLV   80 (118)
Q Consensus        23 ~as~~~~L~PV~a~ilg~l~LgE~lt~-----------~~iiG~~lIl~Gv~l~~-~~~~k~~~~~~~~~   80 (118)
                      ..|+...+.|.+.+..|+-++.+.+.-           ..+.|.++..+|++..- |--.|++|++++++
T Consensus         4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~p   73 (77)
T PF11118_consen    4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQP   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeeccccccch
Confidence            457778889999988888776665432           34567788888888754 55566666666654

>PRK10862 SoxR reducing system protein RseC; Provisional

Probab=86.38  E-value=1.3  Score=33.01  Aligned_cols=25  Identities=4%  Similarity=0.038  Sum_probs=19.0

Q ss_pred             cCccchhhhhhhHHHHHHHHHHHHh
Q 037109           19 RGPLFVSVFTPLSVVAVAVAASLIL   43 (118)
Q Consensus        19 ~Gp~~as~~~~L~PV~a~ilg~l~L   43 (118)
                      ....++++..|+.|+++.++|.++.
T Consensus        72 ~~llkaa~lvYllPLl~li~ga~l~   96 (154)
T PRK10862         72 GSLLRSALLVYMTPLVGLFLGAALF   96 (154)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445688999999999988875543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=85.73  E-value=0.56  Score=38.41  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHH
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATL   57 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~l   57 (118)
                      |+..--+.-.|+++..+.+.-|+.-.+.-.-.++.|.++++|+.+..++....+
T Consensus       233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sill  286 (309)
T COG5070         233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL  286 (309)
T ss_pred             HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence            344445566799999999999999999999999999999999999998876544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=84.90  E-value=2.8  Score=30.44  Aligned_cols=60  Identities=13%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHH-HHHHHHH----HhCccchhhhhhhHHHHHHHHHH
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVA-VAVAASL----ILDEKLHLGSVLGATLIVCGLYA   64 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~-a~ilg~l----~LgE~lt~~~iiG~~lIl~Gv~l   64 (118)
                      .++-....++.+.++|++.+......--++ +.++..+    .-..++++..++|.+++++|+++
T Consensus        74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            344556677889999999887776554444 3455543    35589999999999999999864

>PRK02237 hypothetical protein; Provisional

Probab=83.48  E-value=4.9  Score=28.87  Aligned_cols=65  Identities=9%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhcC-c--cc-hhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            6 GLMVTMTSWCVHIRG-P--LF-VSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         6 ~iay~l~~~ai~~~G-p--~~-as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      +++..+|.|.....+ +  .+ -+.|--+--+.+.+.+++.=|.+++.+.++|+++.++|+.+..++++
T Consensus        40 ~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         40 ALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            444555555555333 1  11 12333344456678899999999999999999999999998877654

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=83.32  E-value=0.9  Score=35.16  Aligned_cols=62  Identities=16%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccch-hhhhhhH-HHHHHHHHHHH
Q 037109            5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLH-LGSVLGA-TLIVCGLYAVL   66 (118)
Q Consensus         5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt-~~~iiG~-~lIl~Gv~l~~   66 (118)
                      -+++|.+...-+....+...+.+..+.|..+..+|..+-+--.. +.+++|+ ++++.|+++..
T Consensus        17 vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~   80 (206)
T TIGR02840        17 VGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY   80 (206)
T ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            34555533322233455666777778888888888776643323 3556655 56677888765

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=82.91  E-value=1.8  Score=36.50  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109           14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV   65 (118)
Q Consensus        14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~   65 (118)
                      -.+.+.+....+++.-.-=+-+.++|.+++++.++...++|.++.+.|+.+-
T Consensus       262 lLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  262 LLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             heeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            4466778888888888889999999999999999999999999999998875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=81.48  E-value=5.9  Score=33.33  Aligned_cols=61  Identities=18%  Similarity=0.097  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhcCccchhh---hh-hhHHHHHHHHHHHHhCccch------hhhhhhHHHHHHHHHHHHhc
Q 037109            7 LMVTMTSWCVHIRGPLFVSV---FT-PLSVVAVAVAASLILDEKLH------LGSVLGATLIVCGLYAVLWG   68 (118)
Q Consensus         7 iay~l~~~ai~~~Gp~~as~---~~-~L~PV~a~ilg~l~LgE~lt------~~~iiG~~lIl~Gv~l~~~~   68 (118)
                      +++..|.++-++.|...+..   +. -+.-+++.+-|. +|||.-+      ...++|.++++.|..+...+
T Consensus       272 ~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        272 LQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            45566777778887665544   33 445588888888 5999999      67789999999999887654

>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed

Probab=80.10  E-value=7.8  Score=33.84  Aligned_cols=47  Identities=6%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHhCc-----cchhhhhhhHHHHHHHHHHHHhccc
Q 037109           24 VSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus        24 as~~~~L~PV~a~ilg~l~LgE-----~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      .++|+.+--+.=.++-++=-.+     .++..|++...++++|+++..+.++
T Consensus       226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~  277 (460)
T PRK13108        226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK  277 (460)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455555555555555431111     3789999999999999988766543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=80.10  E-value=4  Score=33.26  Aligned_cols=67  Identities=13%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccch--h----hhhhhHHHHHHHHHHHHhccc
Q 037109            4 GSGLMVTMTSWCVHIRGPLFVS-VFTPLSVVAVAVAASLILDEKLH--L----GSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         4 ~S~iay~l~~~ai~~~Gp~~as-~~~~L~PV~a~ilg~l~LgE~lt--~----~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      +...-....|+++++-+++.+. +++-+-..++++-|.++++|.-+  .    ....|..+++.|+++....+.
T Consensus       222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            3445556678899999988765 44445566677778888887544  3    456778889999998765543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.47
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.01

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.47  E-value=4.7e-14  Score=102.26  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=53.5

Q ss_pred             CeehhHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109            1 GIVGSGLMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG   70 (118)
Q Consensus         1 GI~~S~iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~   70 (118)
                      |+++++++|++|++++++.+++++..+ ..+.|++++++|++++||++++.+++|.++|++|+++..+.++
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            357899999999999999999999888 8999999999999999999999999999999999999987643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.01  E-value=7.1e-10  Score=76.76  Aligned_cols=68  Identities=12%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             eehhHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109            2 IVGSGLMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK   69 (118)
Q Consensus         2 I~~S~iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~   69 (118)
                      +++.+++|++|.+++++.+.+.+... ..+.|++++++|++++||++++.+++|.++|+.|+++.....
T Consensus        37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45778999999999999999999766 799999999999999999999999999999999999987653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00