Citrus Sinensis ID: 037117

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MNKRSLAVLLRARMRPNNSTKLAFSPLPNRSRARAMQPSSDNANKPQRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPLNEHQPATDKRG
cccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHcccccccccHHHHHHHccccEEEEEEccccccccEEEEEEEEcHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccHHHHHcccccEEcccccccHHHHHHHHHHccccEEccHHHHHHHcccccccccccccc
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEccccccccEEEEEEEcHHHcHHHHHHHHcccccccHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHccHHHHccHHHHHHHcHHHHHHccHHHHHHHHHHcHHccccccHHHHHHHHHHcccccHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEcccccEEEEEEccccccHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEcccHHHHHHHHHHHcccccccccc
MNKRSLAVLLRArmrpnnstklafsplpnrsraramqpssdnankpqrdfeHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGeeaqsagheedgvlgSFYRIERNLRHALKPMYEGLFERlnmhpgglKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALElhqitwddPASLLEKIVAYEAVHPISNLLDLKrrlgvgrrcfgylhaaipgepLIFIEVALLKNVAQTIQEvlwddppipeceaTCALFYSISSTQRGLAGINLGKFLIKRVITLVkrdmphistfatispiPGFIQWLLSKLASQsklaevndisqssadrsgsafrenilepEEEKALMDLSEEFVAGKNGMERMLNLLTsknhewsnfapllsilKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMadrsenglhqsaGIMVNYVYRLENIEEYAQSYfstgqihasddvcryveplnehqpatdkrg
MNKRSLAVLLrarmrpnnstklafsplpnrsraramqpssdnankpqrDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEvndisqssadrsgsafRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPlnehqpatdkrg
MNKRSLAVLLRARMRPNNSTKLAFSPLPNRSRARAMQPSSDNANKPQRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWllsklasqsklaEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPLNEHQPATDKRG
****************************************************************KTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLA*************************************************MERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVE*************
****S*A***************************************************************TVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQ*********************SFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLAS********************AFR*NILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDV******************
MNKRSLAVLLRARMRPNNSTKLAFSPLPN************************RDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQ********************FRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPLN**********
****SLA*LLRARMR*******************************QRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAE****SQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPLNE*********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNKRSLAVLLRARMRPNNSTKLAFSPLPNRSRARAMQPSSDNANKPQRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEPLNEHQPATDKRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query529 2.2.26 [Sep-21-2011]
O95822493 Malonyl-CoA decarboxylase yes no 0.773 0.829 0.402 3e-78
Q920F5492 Malonyl-CoA decarboxylase yes no 0.773 0.831 0.395 5e-77
Q99J39492 Malonyl-CoA decarboxylase yes no 0.773 0.831 0.393 4e-76
P12617504 Malonyl-CoA decarboxylase N/A no 0.784 0.823 0.375 2e-75
>sp|O95822|DCMC_HUMAN Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens GN=MLYCD PE=1 SV=3 Back     alignment and function desciption
 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/447 (40%), Positives = 245/447 (54%), Gaps = 38/447 (8%)

Query: 75  DFSEGYFSLCYENRR-RLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLG 133
           DF   Y  L    +R  LL  LA+ + ++  QV E   Q  GVL    Q     E  VL 
Sbjct: 70  DFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAE---QSAGVLHLRQQ---QREAAVL- 122

Query: 134 SFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIAS--LRALDS 191
              + E  LR+AL P Y GLF  ++   GG++ L  LRAD+L   A + +    +R ++ 
Sbjct: 123 --LQAEDRLRYALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNG 180

Query: 192 YLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGY 251
            LK  L  W S   L L ++TW  P  +L+KI   EAVHP+ N +D+KRR+G  RRC+ +
Sbjct: 181 VLKGMLSEWFSSGFLNLERVTWHSPCEVLQKISEAEAVHPVKNWMDMKRRVGPYRRCYFF 240

Query: 252 LHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEA---TCALFYSISSTQRGLAG 308
            H + PGEPL+ + VAL  +++  IQ ++ + PP    E    T A+FYSIS TQ+GL G
Sbjct: 241 SHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETEEKNKITAAIFYSISLTQQGLQG 300

Query: 309 INLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSAD 368
           + LG FLIKRV+  ++R+ PH+  F+++SPIPGF +WLL  L SQ+K    N++   S  
Sbjct: 301 VELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLLGLLNSQTKEHGRNELFTDSEC 360

Query: 369 RSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTP 428
           +  S                    E   G   +   L LL S + EW     L+  L+TP
Sbjct: 361 KEIS--------------------EITGGP--INETLKLLLSSS-EWVQSEKLVRALQTP 397

Query: 429 LLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR 488
           L+RLCA YL  EK RG AL+ VANFHLQNGA++ RINWMAD S  G+  S G+M NY Y 
Sbjct: 398 LMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWRINWMADVSLRGITGSCGLMANYRYF 457

Query: 489 LENIEEYAQSYFSTGQIHASDDVCRYV 515
           LE     + SY  +  I AS+ V   V
Sbjct: 458 LEETGPNSTSYLGSKIIKASEQVLSLV 484
Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. In peroxisomes it may be involved in degrading intraperoxisomal malonyl-CoA, which is generated by the peroxisomal beta-oxidation of odd chain-length dicarboxylic fatty acids.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 9
>sp|Q920F5|DCMC_RAT Malonyl-CoA decarboxylase, mitochondrial OS=Rattus norvegicus GN=Mlycd PE=2 SV=1 Back     alignment and function description
>sp|Q99J39|DCMC_MOUSE Malonyl-CoA decarboxylase, mitochondrial OS=Mus musculus GN=Mlycd PE=2 SV=1 Back     alignment and function description
>sp|P12617|DCMC_ANSAN Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser GN=MLYCD PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
302144089554 unnamed protein product [Vitis vinifera] 0.994 0.949 0.720 0.0
225444337505 PREDICTED: malonyl-CoA decarboxylase, mi 0.950 0.996 0.746 0.0
356557943533 PREDICTED: malonyl-CoA decarboxylase, mi 0.971 0.964 0.716 0.0
147833187 2252 hypothetical protein VITISV_030803 [Viti 0.886 0.208 0.805 0.0
356532321544 PREDICTED: malonyl-CoA decarboxylase, mi 0.973 0.946 0.705 0.0
255554781544 malonyl-CoA decarboxylase, putative [Ric 0.965 0.939 0.714 0.0
449487650544 PREDICTED: malonyl-CoA decarboxylase, mi 0.975 0.948 0.709 0.0
51536590518 At4g04320 [Arabidopsis thaliana] 0.952 0.972 0.694 0.0
22328323518 malonyl-CoA decarboxylase [Arabidopsis t 0.952 0.972 0.692 0.0
42572829517 malonyl-CoA decarboxylase [Arabidopsis t 0.952 0.974 0.694 0.0
>gi|302144089|emb|CBI23194.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/554 (72%), Positives = 450/554 (81%), Gaps = 28/554 (5%)

Query: 1   MNKRSLAVLLRARMRPNNSTKLAFSPLPNRS-----------------------RARAMQ 37
           MNK+ LA+L+R RM+P N ++ +  P  N +                       + ++  
Sbjct: 1   MNKKGLAILMRTRMKPTNPSERSLFPAANEANKLVSSSEINQSNGSIARLAREEKNKSYS 60

Query: 38  PSSDNANKPQRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAK 97
              +++    R+FE VR++MHSAISMNKTEV+D VLN+FSEGY SL +ENRR+LLLVLAK
Sbjct: 61  QKLNSSGNTYREFEFVRETMHSAISMNKTEVLDDVLNNFSEGYSSLSHENRRKLLLVLAK 120

Query: 98  EYDLNRTQVCELIKQYLGV---LGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLF 154
           EYDLNRTQ+ ELIKQYLG+    GE+AQS+G EE+G L +FYR ERNLRHALKP YE LF
Sbjct: 121 EYDLNRTQIRELIKQYLGLELPSGEKAQSSGTEEEGSLSAFYRTERNLRHALKPTYEVLF 180

Query: 155 ERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWD 214
           ERLN HPGGLK L+ LRADIL IL E+NIASLRALDSYLKEKL TWLSPAALELH ITWD
Sbjct: 181 ERLNTHPGGLKFLSILRADILCILTEDNIASLRALDSYLKEKLITWLSPAALELHHITWD 240

Query: 215 DPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQ 274
           D ASLLEKIVAYEAVHPIS+L DLKRRLGVGRRCFGYLH AIPGEPLIFIEVALLKNVAQ
Sbjct: 241 DSASLLEKIVAYEAVHPISSLTDLKRRLGVGRRCFGYLHPAIPGEPLIFIEVALLKNVAQ 300

Query: 275 TIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFA 334
           TIQEVLW+DPPIPECE+TCALFYSISSTQ GLAGINLGKFLIKRVI LVKRDMPHISTFA
Sbjct: 301 TIQEVLWNDPPIPECESTCALFYSISSTQPGLAGINLGKFLIKRVIKLVKRDMPHISTFA 360

Query: 335 TISPIPGFIQWLLSKLASQSKLAEVND--ISQSSADRSGSAFRENILEPEEEKALMDLSE 392
           T+SPI GF+QWLLSKLASQSKLAE     ++ SSA+  GS FRENILEPEEE+AL+D S 
Sbjct: 361 TLSPILGFMQWLLSKLASQSKLAETETRGMAHSSAESFGSTFRENILEPEEERALLDSSV 420

Query: 393 EFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVAN 452
           EF AG +GME M NLLT  + EW N A LLS+LK PL+RLCARYLLQEKKRGKALDSVAN
Sbjct: 421 EFTAGASGMEVMWNLLTDADFEWINSARLLSVLKPPLMRLCARYLLQEKKRGKALDSVAN 480

Query: 453 FHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVC 512
           FHLQNGAM+ER+NWMADRSE GL QS GIMVNYVYRL++IEEYAQSYFS+G IH S D+C
Sbjct: 481 FHLQNGAMVERLNWMADRSEKGLLQSGGIMVNYVYRLDDIEEYAQSYFSSGHIHTSSDLC 540

Query: 513 RYVEPLNEHQPATD 526
            YVEPL E++   D
Sbjct: 541 CYVEPLKENETTKD 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444337|ref|XP_002264414.1| PREDICTED: malonyl-CoA decarboxylase, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557943|ref|XP_003547269.1| PREDICTED: malonyl-CoA decarboxylase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|147833187|emb|CAN68636.1| hypothetical protein VITISV_030803 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532321|ref|XP_003534722.1| PREDICTED: malonyl-CoA decarboxylase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255554781|ref|XP_002518428.1| malonyl-CoA decarboxylase, putative [Ricinus communis] gi|223542273|gb|EEF43815.1| malonyl-CoA decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449487650|ref|XP_004157732.1| PREDICTED: malonyl-CoA decarboxylase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|51536590|gb|AAU05533.1| At4g04320 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22328323|ref|NP_192341.2| malonyl-CoA decarboxylase [Arabidopsis thaliana] gi|30794100|gb|AAP40492.1| putative malonyl-CoA decarboxylase [Arabidopsis thaliana] gi|110739288|dbj|BAF01557.1| malonyl-CoA decarboxylase like protein [Arabidopsis thaliana] gi|332656977|gb|AEE82377.1| malonyl-CoA decarboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42572829|ref|NP_974511.1| malonyl-CoA decarboxylase [Arabidopsis thaliana] gi|332656978|gb|AEE82378.1| malonyl-CoA decarboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
TAIR|locus:2134872518 AT4G04320 [Arabidopsis thalian 0.952 0.972 0.675 7e-180
UNIPROTKB|O95822493 MLYCD "Malonyl-CoA decarboxyla 0.495 0.531 0.404 1.2e-71
RGD|620234492 Mlycd "malonyl-CoA decarboxyla 0.495 0.532 0.397 2e-71
UNIPROTKB|P12617504 MLYCD "Malonyl-CoA decarboxyla 0.582 0.611 0.351 3.3e-71
MGI|MGI:1928485492 Mlycd "malonyl-CoA decarboxyla 0.495 0.532 0.393 4.7e-70
UNIPROTKB|A5PJC5499 MLYCD "Uncharacterized protein 0.606 0.643 0.348 1.4e-68
UNIPROTKB|E2QTT9486 MLYCD "Uncharacterized protein 0.493 0.537 0.382 9.8e-66
UNIPROTKB|F6UQZ9498 MLYCD "Uncharacterized protein 0.493 0.524 0.382 9.8e-66
ZFIN|ZDB-GENE-070410-120504 mlycd "malonyl-CoA decarboxyla 0.769 0.807 0.367 1.2e-65
TIGR_CMR|ECH_0814457 ECH_0814 "putative malonyl-CoA 0.531 0.614 0.355 2.9e-64
TAIR|locus:2134872 AT4G04320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1746 (619.7 bits), Expect = 7.0e-180, P = 7.0e-180
 Identities = 352/521 (67%), Positives = 410/521 (78%)

Query:     1 MNKRSLAVLLRARMRPNNSTKLAFSPLP---------NRSRARAMQPSSDNANKPQRDFE 51
             M+K++LA+LLRARMR NN +K + S  P         N SR   +Q S+D      R ++
Sbjct:     1 MSKKNLAILLRARMRSNNPSKFSLSQFPKEIQSNPQENHSRDHIVQNSNDFGTTG-RVYD 59

Query:    52 HVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIK 111
              VR++MHSAIS +KT V+D  LNDF EGYFSL  E+R +LLLVLAKEYD+NR QV EL+K
Sbjct:    60 VVRETMHSAISASKTGVLDITLNDFQEGYFSLSLEDREKLLLVLAKEYDVNREQVRELVK 119

Query:   112 QYLGVLGEEAQSAGHEEDGVLGS-FYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSL 170
             QYLG+       A  ++ G L S FYRIERNLRHAL+P YE LFERLN HPGGL+ L+ L
Sbjct:   120 QYLGL----ETPASDDDKGALSSVFYRIERNLRHALRPTYEVLFERLNTHPGGLRFLSIL 175

Query:   171 RADILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVH 230
             RAD+LSIL++EN  SLR LDS+LKEKLG WLSPA LELHQITWDDPASLLEKIVAYEAVH
Sbjct:   176 RADLLSILSKENTPSLRTLDSFLKEKLGMWLSPATLELHQITWDDPASLLEKIVAYEAVH 235

Query:   231 PISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECE 290
             PISNLLDLKRRLG+GRRCFGY H ++PGEPLIFIEVAL++ VAQTIQEVLWD+PPIPE +
Sbjct:   236 PISNLLDLKRRLGIGRRCFGYFHPSVPGEPLIFIEVALMETVAQTIQEVLWDNPPIPENQ 295

Query:   291 ATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWXXXXX 350
             ATCALFYSISSTQ GLAGINLGKFLIKRVITLVK+DMPH+STFAT+SPIPGF+QW     
Sbjct:   296 ATCALFYSISSTQPGLAGINLGKFLIKRVITLVKKDMPHVSTFATLSPIPGFMQWLLSKL 355

Query:   351 XXXXXXXEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTS 410
                    E    +QS++    S F E +L PEEE ALM LS+E  +G NGME +LNLL+ 
Sbjct:   356 SSQSRFAEDERGTQSNSP--SSTFSEKVLLPEEEHALMTLSDESSSGSNGMEVLLNLLSV 413

Query:   411 KNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADR 470
             KN +W+    LL +L+  L+RLCARYLLQEKKRGKALDSVANFHLQNGAM+ERINWMADR
Sbjct:   414 KNCDWATSPRLLPVLEPILMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADR 473

Query:   471 SENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDV 511
             SE G+ QS GIMVNYVYRLENIE+YAQSYF +G+IHAS  +
Sbjct:   474 SEKGIRQSGGIMVNYVYRLENIEDYAQSYFGSGKIHASPGI 514
GO:0006633 "fatty acid biosynthetic process" evidence=IEA
GO:0050080 "malonyl-CoA decarboxylase activity" evidence=IEA;ISS
GO:0005777 "peroxisome" evidence=IDA
UNIPROTKB|O95822 MLYCD "Malonyl-CoA decarboxylase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620234 Mlycd "malonyl-CoA decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P12617 MLYCD "Malonyl-CoA decarboxylase, mitochondrial" [Anser anser anser (taxid:8844)] Back     alignment and assigned GO terms
MGI|MGI:1928485 Mlycd "malonyl-CoA decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJC5 MLYCD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTT9 MLYCD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6UQZ9 MLYCD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-120 mlycd "malonyl-CoA decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0814 ECH_0814 "putative malonyl-CoA decarboxylase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.1.90.824
3rd Layer4.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006890001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (470 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032013001
SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (82 aa)
     •  0.899
GSVIVG00029076001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa)
     •  0.899
GSVIVG00038001001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (622 aa)
   • •  0.809
GSVIVG00015269001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1612 aa)
     •• 0.809
GSVIVG00031806001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (428 aa)
     •  0.800
GSVIVG00026793001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (732 aa)
     •  0.800
GSVIVG00025048001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (236 aa)
     •  0.800
GSVIVG00024012001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (392 aa)
     •  0.800
GSVIVG00021457001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (763 aa)
     •  0.800
GSVIVG00017898001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
pfam05292354 pfam05292, MCD, Malonyl-CoA decarboxylase (MCD) 1e-117
pfam05292354 pfam05292, MCD, Malonyl-CoA decarboxylase (MCD) 8e-10
>gnl|CDD|218541 pfam05292, MCD, Malonyl-CoA decarboxylase (MCD) Back     alignment and domain information 
 Score =  349 bits (896), Expect = e-117
 Identities = 182/354 (51%), Positives = 231/354 (65%), Gaps = 26/354 (7%)

Query: 137 RIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIASLRALDSYLKEK 196
           R E           + L +  N  PGG   +  +R + L+  ++ + +    LD  L + 
Sbjct: 25  RKEIQSNPQANHSRDHLVQNSNDFPGGTGRVYDMRRETLA--SKISASKTGVLDITLNDF 82

Query: 197 LGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLG-VGRRCFGYLHAA 255
             +W S   L+L ++ W  PA +L K   YEAVH I+   +L+ RL  + RRCFG+ H  
Sbjct: 83  QESWFSLGLLDLEKLDWTTPAYILVKAKEYEAVHEIAGWEELRERLRPLVRRCFGFFHET 142

Query: 256 IPGEPLIFIEVALLKNVAQTIQEVLWDD-PPIPECEATCALFYSISSTQRGLAGINLGKF 314
           +  EPL+F+EVAL++ VAQTI +VL +    I   EAT A+FYSIS+ Q GLAGINLG F
Sbjct: 143 LASEPLVFVEVALMETVAQTIGDVLDEGREQINADEATTAVFYSISNCQPGLAGINLGNF 202

Query: 315 LIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAF 374
           LIKRVITL+K+DMPH+STFAT+SPIPGF+QWLLSKL+SQS+ AE                
Sbjct: 203 LIKRVITLLKKDMPHVSTFATLSPIPGFMQWLLSKLSSQSRFAE---------------- 246

Query: 375 RENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCA 434
                 PEEE ALM LS+E  +G NGME +  LL+ KN +W+    LL +L+  L+RLCA
Sbjct: 247 ------PEEEHALMTLSDESSSGSNGMEVLETLLSVKNCDWATSKRLLPVLEPILMRLCA 300

Query: 435 RYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR 488
           RYLLQEKKRGKALDSVANFHLQNGAM+ER+NWM DRSE G+ QS GIMVNYVYR
Sbjct: 301 RYLLQEKKRGKALDSVANFHLQNGAMLERLNWMGDRSEKGIRQSGGIMVNYVYR 354

This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK). Length = 354
>gnl|CDD|218541 pfam05292, MCD, Malonyl-CoA decarboxylase (MCD) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 529
PF05292354 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IP 100.0
KOG3018362 consensus Malonyl-CoA decarboxylase [Carbohydrate 100.0
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins Back     alignment and domain information 
Probab=100.00  E-value=1.5e-142  Score=1089.00  Aligned_cols=352  Identities=52%  Similarity=0.855  Sum_probs=239.7

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhhcccccccCCCCcccccchhHHHHHHHHHhccccHHHHHHHHhcCCChHHHHHHHHHH
Q 037117           94 VLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRAD  173 (529)
Q Consensus        94 ~La~~f~~d~~~v~~a~~~y~~~~~~e~~~~~~~~~~~~~a~~~ae~~Lr~aleP~r~~Lfrrln~~pgG~kfLV~mRaD  173 (529)
                      +|+++||||+++|.+|+++|....                   +++.+|+.+++|+|++||++||++||||+|||+||+|
T Consensus         1 ml~~~f~~d~~~~~~a~~~y~~~~-------------------~~~~~l~~a~~p~r~~l~~~ln~~pgG~~~Lv~mR~d   61 (354)
T PF05292_consen    1 MLAEKFGPDQEALDKAIEAYDKND-------------------QAERRLRQALEPPRQELFRRLNRLPGGTKFLVDMRAD   61 (354)
T ss_dssp             -----------------------------------------------HHHHHTS-TTHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred             CCcccccccccccccccccchhhh-------------------hHHHHHHHHhcchHHHHHHHHhcCCCchHHHHHHHHH
Confidence            589999999999999999993221                   2348999999999999999999999999999999999


Q ss_pred             HHHHHHhccchhHHHHhHHHHHHHHhccCcccceeeecCCCCcHHHHHHHHhhccccCCCCchhHhhhhCCC-ceEEEee
Q 037117          174 ILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVG-RRCFGYL  252 (529)
Q Consensus       174 LL~~l~~~~~p~L~aLD~dL~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~YEAVH~I~~W~DLkrRL~~d-RRCFaFF  252 (529)
                      ||+...+  .|+|++||.||+|||++|||+|||+|+||||+|||+||||||+|||||||+||+||||||+|+ ||||+||
T Consensus        62 ll~~~~~--~~~L~~ld~~l~~Ll~~WF~~G~L~l~rItw~spa~iLekii~yEAVH~i~~w~DLkrRL~~~dRRcfaff  139 (354)
T PF05292_consen   62 LLSSAKS--SPELRALDSDLRHLLSSWFNVGFLELRRITWSSPASILEKIIRYEAVHPIRSWDDLKRRLGPDDRRCFAFF  139 (354)
T ss_dssp             HHHTSS---SHHHHHHHHHHHHHHHHHTSGGGEEEEEE-TTS-HHHHHHHHHT--SS---SHHHHHHHCSTT-EEEEEEE
T ss_pred             HHhcccc--CccHHHHHHHHHHHHHHhcCccceEEEeecCCChHHHHHHHHHHhhcccccCHHHHHHHhchhhhhhheee
Confidence            9997666  599999999999999999999999999999999999999999999999999999999999995 9999999


Q ss_pred             cCCCCCCCeEEEeeecccchhhhHHhhhcCC-CCCCCCCCceEEEEeecccccCcccccchhhHHHHHHHHHHhhCCCCC
Q 037117          253 HAAIPGEPLIFIEVALLKNVAQTIQEVLWDD-PPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHIS  331 (529)
Q Consensus       253 HPamP~EPLIFVeVALt~~ia~sIq~iL~~~-~~~~~~~a~tAiFYSISntQ~GL~GIsfGNfLIKrVV~~L~~e~P~lk  331 (529)
                      ||+||+|||||||||||++||+|||+||++. ++++++++||||||||||||+||+|||||||||||||++|++|||+||
T Consensus       140 Hp~mP~ePLIfveVALt~~ia~sIq~il~~~~~~~~~~~~~tAiFYSISn~q~GL~Gi~lGn~LIK~Vv~~L~~e~p~l~  219 (354)
T PF05292_consen  140 HPAMPDEPLIFVEVALTDGIASSIQPILDEDRPPIDEEEADTAIFYSISNTQKGLRGISLGNFLIKRVVEELQREFPNLK  219 (354)
T ss_dssp             ETTCTT--SEEEEEEEESS----SHHHHS------------EEEEEEEEES-GGGTTS-HHHHHHHHHHHHHHHH-TT--
T ss_pred             cCCCCCCCeeeeHHHhccchhhhhHHHhcCCCcccccCCCCEEEEEecccchhhhccCchHHHHHHHHHHHHHHhCcccc
Confidence            9999999999999999999999999999875 667888999999999999999999999999999999999999999999


Q ss_pred             cccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchhcccCChHHHHHHhhhhHHhhhccchHHHHHHHhhcc
Q 037117          332 TFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSK  411 (529)
Q Consensus       332 tF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~e~~l~~~e~~~~~~~~~e~~~~~~~~~~l~~~L~~~  411 (529)
                      ||+||||||||++||.++++.+....              ...+|..+....+     .......+......|.. |.+ 
T Consensus       220 ~F~TLSPiPgF~~Wl~~~l~~~~~~~--------------~~~~~~~l~~~~~-----~~~~~~~~~~~~~~L~~-l~~-  278 (354)
T PF05292_consen  220 TFSTLSPIPGFRRWLLKKLASDSDLP--------------SLTEEKALAALSD-----ISSSESNGLEALEALLA-LDD-  278 (354)
T ss_dssp             EEEE-B----HHHHHHHH--------------------------------------------------THHHHH--HTT-
T ss_pred             ccccCCCCccHHHHHHHHhhcchhhc--------------cchhHHHHHHhhh-----hhhccCccchhHhhhhh-ccC-
Confidence            99999999999999999876533211              0111111110000     00000011112223332 344 


Q ss_pred             CCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccccCcchhhhcccCcCCChhhhhcccceeeecccc
Q 037117          412 NHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR  488 (529)
Q Consensus       412 ~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHLgNGA~leRlNw~aD~S~kGl~qS~GiMVNYlY~  488 (529)
                       ++|+.|+++.++++++|++||||||++||++|+|+||||||||||||+||||||+||+|+||++|||||||||+||
T Consensus       279 -~~W~~d~~~~~~l~~~l~~l~a~Yl~~ek~~g~~~dpVa~FHL~NGA~~~rlnw~ad~S~~Gl~~S~G~MVNY~Y~  354 (354)
T PF05292_consen  279 -PDWAEDPELSEALKPPLLRLAAHYLLNEKRRGRALDPVARFHLGNGARLERLNWLADTSPKGLRQSFGLMVNYLYD  354 (354)
T ss_dssp             -TGGGG-HHHHHHTHHHHHHHHHHHHHT-EETTEESSHHHHHHHHTT-EEEEEETTS--SHHHHHHHTT-EEEEEE-
T ss_pred             -ccccCCHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCchhhhccCCCcEeeeeeeCCcCChhHHHhccceeEeeecC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999997

Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
>KOG3018 consensus Malonyl-CoA decarboxylase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
2ygw_A460 Crystal Structure Of Human Mcd Length = 460 3e-76
>pdb|2YGW|A Chain A, Crystal Structure Of Human Mcd Length = 460 Back     alignment and structure 
Iteration: 1

 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 241/447 (53%), Gaps = 38/447 (8%)
Query: 75  DFSEGYFSLCYENRR-RLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLG 133
           DF   Y  L    +R  LL  LA+ + ++  QV E   Q  GVL    Q     E  VL 
Sbjct: 40  DFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAE---QSAGVLHLRQQ---QREAAVL- 92
Query: 134 SFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENIAS--LRALDS 191
              + E  LR+AL P Y GLF  ++   GG++ L  LRAD+L   A + +    +R ++ 
Sbjct: 93  --LQAEDRLRYALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNG 150
Query: 192 YLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGY 251
            LK  L  W S   L L ++TW  P  +L+KI   EAVHP+ N +D+KRR+G  RRC+ +
Sbjct: 151 VLKGMLSEWFSSGFLNLERVTWHSPCEVLQKISEAEAVHPVKNWMDMKRRVGPYRRCYFF 210
Query: 252 LHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEA---TCALFYSISSTQRGLAG 308
            H + PGEPL+ + VAL  +++  IQ ++ + PP     A   T A+FYSIS TQ+GL G
Sbjct: 211 SHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETAAANKITAAIFYSISLTQQGLQG 270
Query: 309 INLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWXXXXXXXXXXXXEVNDISQSSAD 368
           + LG FLIKRV+  ++R+ PH+  F+++SPIPGF +W                +  S   
Sbjct: 271 VELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLL-------------GLLNSQTK 317
Query: 369 RSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTP 428
             G   R  +    E K + +++         +   L LL S + EW     L+  L+TP
Sbjct: 318 EHG---RNELFTDSECKEISEIT------GGPINETLKLLLSSS-EWVQSEKLVRALQTP 367
Query: 429 LLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR 488
           L+RLCA YL  EK RG AL+ VANFHLQNGA++ RINWMAD S  G+  S G+M NY Y 
Sbjct: 368 LMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWRINWMADVSLRGITGSCGLMANYRYF 427
Query: 489 LENIEEYAQSYFSTGQIHASDDVCRYV 515
           LE     + SY  +  I AS+ V   V
Sbjct: 428 LEETGPNSTSYLGSKIIKASEQVLSLV 454

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
2ygw_A460 Malonyl-COA decarboxylase, mitochondrial; lyase; 2 1e-119
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens} Length = 460 Back     alignment and structure
 Score =  358 bits (919), Expect = e-119
 Identities = 171/453 (37%), Positives = 244/453 (53%), Gaps = 38/453 (8%)

Query: 75  DFSEGYFSLC-YENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLG 133
           DF   Y  L     R  LL  LA+ + ++  QV E     L +  ++ ++A         
Sbjct: 40  DFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHLRQQQREAAV-------- 91

Query: 134 SFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEENI--ASLRALDS 191
              + E  LR+AL P Y GLF  ++   GG++ L  LRAD+L   A + +    +R ++ 
Sbjct: 92  -LLQAEDRLRYALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNG 150

Query: 192 YLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGY 251
            LK  L  W S   L L ++TW  P  +L+KI   EAVHP+ N +D+KRR+G  RRC+ +
Sbjct: 151 VLKGMLSEWFSSGFLNLERVTWHSPCEVLQKISEAEAVHPVKNWMDMKRRVGPYRRCYFF 210

Query: 252 LHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPP---IPECEATCALFYSISSTQRGLAG 308
            H + PGEPL+ + VAL  +++  IQ ++ + PP       + T A+FYSIS TQ+GL G
Sbjct: 211 SHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETAAANKITAAIFYSISLTQQGLQG 270

Query: 309 INLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSAD 368
           + LG FLIKRV+  ++R+ PH+  F+++SPIPGF +WLL  L SQ+K    N+       
Sbjct: 271 VELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLLGLLNSQTKEHGRNE------- 323

Query: 369 RSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTP 428
                    +    E K +       + G    E +  LL   + EW     L+  L+TP
Sbjct: 324 ---------LFTDSECKEI-----SEITGGPINETLKLLL--SSSEWVQSEKLVRALQTP 367

Query: 429 LLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR 488
           L+RLCA YL  EK RG AL+ VANFHLQNGA++ RINWMAD S  G+  S G+M NY Y 
Sbjct: 368 LMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWRINWMADVSLRGITGSCGLMANYRYF 427

Query: 489 LENIEEYAQSYFSTGQIHASDDVCRYVEPLNEH 521
           LE     + SY  +  I AS+ V   V    ++
Sbjct: 428 LEETGPNSTSYLGSKIIKASEQVLSLVAQFQKN 460
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
2ygw_A460 Malonyl-COA decarboxylase, mitochondrial; lyase; 2 100.0
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-161  Score=1261.62  Aligned_cols=416  Identities=41%  Similarity=0.683  Sum_probs=359.2

Q ss_pred             HHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcccccccCCCCcccccchhHHHHHHHHHhccc
Q 037117           70 DTVLNDFSEGYFSLCYE-NRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKP  148 (529)
Q Consensus        70 ~~~a~~i~~~Y~~l~~~-~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~e~~~~~~~~~~~~~a~~~ae~~Lr~aleP  148 (529)
                      .++|++|++.|.+|+++ +|++||..||++||||+++|.+|+++|++..+.         ..+.++.++++.+|++|++|
T Consensus        35 e~~a~~i~~~Y~~l~~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~---------~~~~~~~~~~~~~L~~aleP  105 (460)
T 2ygw_A           35 EGQCADFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHLRQQ---------QREAAVLLQAEDRLRYALVP  105 (460)
T ss_dssp             -CHHHHHHHHHHTCCSHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHTC-----------CCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccC---------CcchhHHHHHHHHHHHhccc
Confidence            44999999999999999 999999999999999999999999999985441         12223467899999999999


Q ss_pred             cHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcc--chhHHHHhHHHHHHHHhccCcccceeeecCCCCcHHHHHHHHhh
Q 037117          149 MYEGLFERLNMHPGGLKVLTSLRADILSILAEEN--IASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAY  226 (529)
Q Consensus       149 ~r~~Lfrrln~~pgG~kfLV~mRaDLL~~l~~~~--~p~L~aLD~dL~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~Y  226 (529)
                      +|++||+|||++||||+|||+||+|||+++++++  .|+|++||.||+|||++|||+|||+|+||||+|||+||||||+|
T Consensus       106 ~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~Y  185 (460)
T 2ygw_A          106 RYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSEWFSSGFLNLERVTWHSPCEVLQKISEA  185 (460)
T ss_dssp             TTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHTCGGGEEEEEECTTSCHHHHHHHHHS
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHcCccceeeeeccCCCcHHHHHHHHHh
Confidence            9999999999999999999999999999998763  47999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCchhHhhhhCCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhhcCCCC-CCC--CCCceEEEEeecccc
Q 037117          227 EAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPP-IPE--CEATCALFYSISSTQ  303 (529)
Q Consensus       227 EAVH~I~~W~DLkrRL~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL~~~~~-~~~--~~a~tAiFYSISntQ  303 (529)
                      ||||||+||+||||||||||||||||||+||+|||||||||||++||+|||+||++..+ .++  .+++|||||||||||
T Consensus       186 EAVH~I~~W~DLkrRL~pdRRCfaFFHp~mP~EPLIfVeVALt~~ia~sIq~iL~~~~~~~~~~~~~~~tAIFYSISntQ  265 (460)
T 2ygw_A          186 EAVHPVKNWMDMKRRVGPYRRCYFFSHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETAAANKITAAIFYSISLTQ  265 (460)
T ss_dssp             CCSSCCCSHHHHHHHTSTTEEEEEEEETTBTTCCSEEEEEEEESSCCCCSHHHHSCCCCC------CCCEEEEEEEEESC
T ss_pred             ccccccCCHHHHHHhcCCCCeEEEecCCCCCCCCeEEEeeccccchhhHHHHHhcCCCCcccccccCCCeEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999999987643 333  445699999999999


Q ss_pred             cCcccccchhhHHHHHHHHHHhhCCCCCcccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchhcccCChHH
Q 037117          304 RGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEE  383 (529)
Q Consensus       304 ~GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~e~~l~~~e  383 (529)
                      +||+|||||||||||||++|++|||+||||+||||||||++||.++++.+...           .+....|++     .+
T Consensus       266 ~GL~GIsfGnfLIKrVV~~L~~E~P~lktF~TLSPIPGF~~WL~~~l~~~~~~-----------~~~~~~l~~-----~~  329 (460)
T 2ygw_A          266 QGLQGVELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLLGLLNSQTKE-----------HGRNELFTD-----SE  329 (460)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHHHHCTTCCEEEECBC-CCHHHHHHHHCC--------------------------------
T ss_pred             cccccccchhHHHHHHHHHHHHhCcCccceeecCCCccHHHHHHHHhhhhhhc-----------ccccccccH-----HH
Confidence            99999999999999999999999999999999999999999999887544321           001122222     22


Q ss_pred             HHHHhhhhHHhhhccchHHHHHHHhhccCCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccccCcchhhh
Q 037117          384 EKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIER  463 (529)
Q Consensus       384 ~~~~~~~~~e~~~~~~~~~~l~~~L~~~~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHLgNGA~leR  463 (529)
                      .+++..     ..+.....+|..++..  .+|+.|+++.+.++++||+||||||++||++|+|+||||||||||||+|||
T Consensus       330 ~~~l~~-----~~~~~~~~~l~~L~~~--~~w~~d~~l~~~l~~~L~rLaA~YL~~eK~~G~~lDPVA~FHLgNGA~v~r  402 (460)
T 2ygw_A          330 CKEISE-----ITGGPINETLKLLLSS--SEWVQSEKLVRALQTPLMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWR  402 (460)
T ss_dssp             -----------------CTHHHHHHTT--TGGGGCHHHHHHTHHHHHHHHHHHHHTCEETTEESSHHHHHHHHTTCEEEE
T ss_pred             HHHHhh-----ccccchHHHHHHHhcc--cccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchhccccCcceeee
Confidence            223321     1122122345555544  699999999999999999999999999999999999999999999999999


Q ss_pred             cccCcCCChhhhhcccceeeecccccccHHHHHHHHHhcCceeecHHHHHhhcc
Q 037117          464 INWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEP  517 (529)
Q Consensus       464 lNw~aD~S~kGl~qS~GiMVNYlY~L~~ie~nhe~Y~~~g~I~aS~~V~~l~~~  517 (529)
                      |||+||+|+||++|||||||||+|+|++||+||++|..+|+|++|++|++|++.
T Consensus       403 lNw~aD~S~kGl~qS~GlMVNYlY~L~~ie~N~e~y~~~g~I~aS~~V~~l~~~  456 (460)
T 2ygw_A          403 INWMADVSLRGITGSCGLMANYRYFLEETGPNSTSYLGSKIIKASEQVLSLVAQ  456 (460)
T ss_dssp             EETTSCCSHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHCCCCBCHHHHHHHHH
T ss_pred             eccccccChhhHhhhcceeeeeeecHHHHHHHHHHHHhCCceecCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999854

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00