Citrus Sinensis ID: 037125

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS
Secondary Structure (PSIPRED)
cEEEcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHccccccccEEEEccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCgftitkpwwIRAYYLCPTSWVLNGIlssqygdtdkeisIFGKTKTISSFLddyfgfnydllgvvgivPIIFPIVLASLFAHFIgnklnfqrs
Flexible Loop (DISEMBL)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS
Low Complexity Region (SEG)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLgvvgivpiifpivLASLFAHFIGNKLNFQRS
Disordered region (IsUnstruct)
*LVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLN****
Disordered Region (DISOPRED)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR*
Disordered Region (DISEMBL)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS
Disordered Region (DISPRO)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR*
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VLVEVSYLFIQAVIYVIITYPMISYYCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q7PC81	1390	ABC transporter G family	yes	no	0.993	0.113	0.551	1e-46
Q7PC82	1392	ABC transporter G family	no	no	0.993	0.113	0.545	3e-46
Q5W274	1447	Pleiotropic drug resistan	N/A	no	0.987	0.108	0.537	7e-46
Q9LFH0	1450	ABC transporter G family	no	no	0.987	0.108	0.537	6e-45
Q7PC83	1397	ABC transporter G family	no	no	0.993	0.113	0.528	1e-44
Q8GZ52	1400	ABC transporter G family	no	no	0.993	0.112	0.517	7e-43
Q9ZUT8	1413	ABC transporter G family	no	no	0.993	0.111	0.482	5e-41
Q7FMW4	1509	Pleiotropic drug resistan	yes	no	0.987	0.104	0.408	1e-32
Q5Z9S8	1500	Pleiotropic drug resistan	no	no	0.981	0.104	0.369	2e-28
Q9M9E1	1423	ABC transporter G family	no	no	0.968	0.108	0.344	7e-27

>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 123/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y   Q++IYVII YPM+           S+Y + C+LL FNY GML+V +TP V
Sbjct: 1218 VLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNV 1277

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  SFY+++NLF G+ + KP    WWI  YYL PTSWVLNG+L+SQYGD +KEI 
Sbjct: 1278 HIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEIL 1337

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+ K +S+FL+DYFG+ YD L +V +V I FPI+LASLFA FIG KLNFQ+ 
Sbjct: 1338 AFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIG-KLNFQKK 1390

May be a general defense protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1

 Score =  184 bits (466), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 121/174 (69%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y   Q+++YVII YPM+           S+Y + C LL FNY GML+V +TP V
Sbjct: 1220 VLVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNV 1279

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  SFY+++NLF G+ + KP    WWI  YYL PTSWVLNG+L+SQYGD +KEI 
Sbjct: 1280 HIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEIL 1339

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+ K +S FL+DYFG+ YD L +V +V I FPI+LASLFA FIG KLNFQ+ 
Sbjct: 1340 AFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIG-KLNFQKK 1392

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1

 Score =  182 bits (462), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISYY-----------CMLCNLLYFNYMGMLIVSLTPGV 49
            V +E+ YL  QA+ + +ITYPMI YY            M C LLYF Y+GM++VS+TP  
Sbjct: 1275 VAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSF 1334

Query: 50   QVASILTFSFYSMLNLFCGFTITK----PWWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             VA+IL  SFY+M NLF GF + K     WWI  YYL PTSW LNG+L+SQYGD +KEI+
Sbjct: 1335 PVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEIT 1394

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +F + KT+++FL DYFGF+++ L +V  V I +P+V ASLFA FIG KLNFQR
Sbjct: 1395 VFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIG-KLNFQR 1446

May be a general defense protein.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1

 Score =  179 bits (454), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 117/173 (67%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            V+ E+ Y+FIQA  +VI+TYPMI           S Y M C+LL FNY+ M +VS+TP  
Sbjct: 1278 VVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNF 1337

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             VA+IL   FY   NLF GF I +     WWI  YYL PTSW LNG +SSQYGD  +EI+
Sbjct: 1338 MVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEIN 1397

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +FG++ T++ FL DYFGF++DLL V  +V I FPI LAS+FA F+G KLNFQR
Sbjct: 1398 VFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVG-KLNFQR 1449

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 122/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVEV Y  +Q+++  II YPMI Y           Y + C+LL FNY GML+V+LTP +
Sbjct: 1225 VLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNI 1284

Query: 50   QVASILTFSFYSMLNLFCGFTITK----PWWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  +F+SM+NLF GF + K     WWI  YYL PTSWVL G+LSSQYGD +KEI+
Sbjct: 1285 HMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEIT 1344

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
            +FG+ K++S+FL+DYFG+ +D L VV  V I FPI++ASLFA F+ +KLNFQ+ 
Sbjct: 1345 VFGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFM-SKLNFQKK 1397

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            VL+EV Y  +Q+++  II YP I Y           Y + C+LL FNY GML+V+LTP +
Sbjct: 1228 VLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNI 1287

Query: 50   QVASILTFSFYSMLNLFCGFTITK----PWWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  SF+SMLNLF GF I K     WWI  YYL PTSWVL G+LSSQYGD DKEI 
Sbjct: 1288 HMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEIL 1347

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
            +FG+ K +S+FL+DYFG+ ++ L VV  V I +PI++A+LFA F+ +KL+FQ+ 
Sbjct: 1348 VFGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFM-SKLSFQKK 1400

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 116/174 (66%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            V+ E+ Y+FIQ+  +VI+ YPMI           S Y M CNLL FNY+ M ++S+TP  
Sbjct: 1241 VVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNF 1300

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             VA+IL   F++  N+F GF I KP    WW+  YY+ PTSW LN   SSQYGD  ++I+
Sbjct: 1301 MVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKIN 1360

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+TKT++SFL+DYFGF++D L +  I+ I FPI LA+++A F+  KLNFQ+ 
Sbjct: 1361 AFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVA-KLNFQKR 1413

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7FMW4|PDR15_ORYSJ Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/174 (40%), Positives = 108/174 (62%), Gaps = 17/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            V+VE+ Y+F++ VIY +I YPM+S+           Y      LYF Y GM+ VS++P +
Sbjct: 1336 VVVEIPYVFVETVIYTLIVYPMMSFQWTPAKFFWFFYVSFFTFLYFTYYGMMNVSVSPNL 1395

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVASIL  +FY++ NLF GF I +P    WW+  Y+LCP +W + G++ SQYGD +  I+
Sbjct: 1396 QVASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFIT 1455

Query: 106  IFGKT-KTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            + G++ + +  F+ DYFG++ D +GVV  V   F +  A  +A+ I   LNFQ+
Sbjct: 1456 VPGQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSI-RTLNFQQ 1508

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 17/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISYYCMLCNL-----------LYFNYMGMLIVSLTPGV 49
            V++E+ Y+F+Q   Y +I Y M+S+                  LYF Y GM+ V+++P  
Sbjct: 1327 VVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNH 1386

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            +VA+I   +FYS+ NLF GF I +P    WWI  Y+LCP +W + G++ +QYGD ++ IS
Sbjct: 1387 EVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIIS 1446

Query: 106  IFGKT-KTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQ 157
            + G++ +TIS ++  +FG++   + VV  V ++F +  A ++A  I  KLNFQ
Sbjct: 1447 VPGQSNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICI-KKLNFQ 1498

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1

 Score =  119 bits (299), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 103/174 (59%), Gaps = 20/174 (11%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            V +E+ Y+ +QA++Y +I Y MI +           + M  + L F + GM+ V++TP  
Sbjct: 1253 VFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNH 1312

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +AS+++ +FY + NLF GF I +P    WW   Y+LCP +W L G+++SQ+GD  + ++
Sbjct: 1313 HIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMA 1372

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNK-LNFQR 158
                  ++  F+ +++G+    LGVV  + +IFP++ A +FA  IG K  NFQ+
Sbjct: 1373 --DSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFA--IGIKSFNFQK 1422

May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255542838	1458	ATP-binding cassette transporter, putati	0.993	0.108	0.626	2e-53
224109722	1406	predicted protein [Populus trichocarpa]	0.987	0.111	0.578	6e-51
224132634	1250	predicted protein [Populus trichocarpa]	0.987	0.125	0.583	7e-51
224112072	1455	predicted protein [Populus trichocarpa]	0.987	0.107	0.578	5e-49
297736800	1486	unnamed protein product [Vitis vinifera]	0.993	0.106	0.557	2e-46
359477643	1492	PREDICTED: pleiotropic drug resistance p	0.987	0.105	0.560	2e-46
224099038	1459	predicted protein [Populus trichocarpa]	0.987	0.107	0.554	4e-46
297804738	1390	hypothetical protein ARALYDRAFT_355259 [	0.993	0.113	0.551	5e-45
75326879	1390	RecName: Full=ABC transporter G family m	0.993	0.113	0.551	7e-45
186511823	1388	ABC transporter G family member 43 [Arab	0.993	0.113	0.551	7e-45

>gi|255542838|ref|XP_002512482.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223548443|gb|EEF49934.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 133/174 (76%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y FI A+IYV+ITYPM+ Y           Y + C LL FNYMGML+VSLTP +
Sbjct: 1269 VLVELPYSFIIAIIYVVITYPMVGYSMSAYKIFWAFYSLFCTLLSFNYMGMLLVSLTPNI 1328

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVASIL  S Y+ML LF GF + +P    WWI  YY+CPTSWVLNG+L+SQ+GD DKEIS
Sbjct: 1329 QVASILASSTYTMLILFTGFIVPRPRIPKWWIWLYYMCPTSWVLNGMLTSQFGDIDKEIS 1388

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
            +FG+TKT+S+FL+DYFGF+++ LGVVG V +IFP V ASLFA+FIG KLNFQR 
Sbjct: 1389 VFGETKTVSAFLEDYFGFHHNFLGVVGAVLVIFPFVFASLFAYFIG-KLNFQRR 1441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 129/173 (74%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVEV YL +Q++IY+I TYPMI           S++ M C LL+FNY GML+VSLTP +
Sbjct: 1234 VLVEVPYLLVQSIIYLITTYPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNI 1293

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVA+IL    Y+MLN F GF + KP    WW+  YY+CPTSW LNG+L+SQYGD D+EIS
Sbjct: 1294 QVAAILASFSYTMLNFFSGFVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEIS 1353

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +FG+ + +S F++DYFGF++  L VVG+V +IFPIV ASLFA+FIG +LNFQR
Sbjct: 1354 VFGEARALSDFIEDYFGFHHSFLSVVGVVLVIFPIVTASLFAYFIG-RLNFQR 1405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132634|ref|XP_002321371.1| predicted protein [Populus trichocarpa] gi|222868367|gb|EEF05498.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 129/173 (74%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVEV YL  Q++IY+IITYPMI           S++ M C LL+FNY GML+VSLTP +
Sbjct: 1078 VLVEVPYLLAQSIIYLIITYPMIGYSSSAYKIFWSFHSMFCTLLFFNYQGMLLVSLTPNI 1137

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVA+IL    Y+MLN F GF + KP    WW+  YY+CPTSW LNG+L+SQYGD D+EIS
Sbjct: 1138 QVAAILASFSYTMLNFFSGFVVPKPHIPKWWLWLYYICPTSWALNGMLTSQYGDVDEEIS 1197

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +FG+ + +S F++DYFGF++  L VVG+V +IFPIV ASLFA+FIG +LNFQR
Sbjct: 1198 VFGEARALSDFIEDYFGFHHSFLSVVGVVLVIFPIVTASLFAYFIG-RLNFQR 1249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112072|ref|XP_002316074.1| predicted protein [Populus trichocarpa] gi|222865114|gb|EEF02245.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 128/173 (73%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVEV YL I+ ++YVIITYPMI           S+Y M C LL+FNY+GML+VSLTP +
Sbjct: 1283 VLVEVPYLLIEGILYVIITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTPNI 1342

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVAS L    Y+ LN F GF + KP    WW+  YY+CP+SW LN +L+SQYGD +KEIS
Sbjct: 1343 QVASNLAAFAYTTLNFFSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQYGDVNKEIS 1402

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +FG+T T++ F+ DYFGF+++ LGVVG+V IIFPI+ ASLFA+F G +LNFQR
Sbjct: 1403 VFGETMTVADFVGDYFGFHHNFLGVVGVVLIIFPIITASLFAYFFG-RLNFQR 1454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736800|emb|CBI26001.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 122/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISYY-----------CMLCNLLYFNYMGMLIVSLTPGV 49
            V +EV Y+ +QA++YV ITYPMI YY              C  LYF Y+GMLIVSL+P  
Sbjct: 1314 VAIEVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNS 1373

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVASIL  + Y++LNLF GF +  P    WWI  Y++CPTSW LNG+L+SQYGD  KEI 
Sbjct: 1374 QVASILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEIL 1433

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
            IFG+ K +SSFL DYFGF +D LG+V +  ++FP+V ASLFA+FI +KLNFQR 
Sbjct: 1434 IFGELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFI-DKLNFQRR 1486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477643|ref|XP_002266393.2| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 122/173 (70%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISYY-----------CMLCNLLYFNYMGMLIVSLTPGV 49
            V +EV Y+ +QA++YV ITYPMI YY              C  LYF Y+GMLIVSL+P  
Sbjct: 1320 VAIEVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNS 1379

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVASIL  + Y++LNLF GF +  P    WWI  Y++CPTSW LNG+L+SQYGD  KEI 
Sbjct: 1380 QVASILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEIL 1439

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            IFG+ K +SSFL DYFGF +D LG+V +  ++FP+V ASLFA+FI +KLNFQR
Sbjct: 1440 IFGELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFI-DKLNFQR 1491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099038|ref|XP_002311358.1| predicted protein [Populus trichocarpa] gi|222851178|gb|EEE88725.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 126/173 (72%), Gaps = 16/173 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVEV YL  QA+IYV IT+ MI Y           Y M C LL FNY+GML++S+TP +
Sbjct: 1287 VLVEVPYLLAQAIIYVTITHTMIGYSLSPYKIFWSVYGMFCTLLSFNYLGMLLISVTPDI 1346

Query: 50   QVASILTFSFYSMLNLFCGFTITK----PWWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            Q+AS LT  FY+ML+LF GF + +     WWI  YY+ PTSW LNG+ +SQYGD +KEI+
Sbjct: 1347 QLASALTSPFYTMLHLFSGFFVPRTYIPKWWIWLYYISPTSWQLNGLFTSQYGDLEKEIT 1406

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158
            +FG+TK++++FL DYFGF+ + L VV +V IIFPI+ ASLFA+FIG +LNFQ+
Sbjct: 1407 VFGQTKSVAAFLQDYFGFHRNFLSVVAVVLIIFPIIFASLFAYFIG-RLNFQK 1458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804738|ref|XP_002870253.1| hypothetical protein ARALYDRAFT_355259 [Arabidopsis lyrata subsp. lyrata] gi|297316089|gb|EFH46512.1| hypothetical protein ARALYDRAFT_355259 [Arabidopsis lyrata subsp. lyrata]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 122/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y   Q+++YVII YPM+           S+Y + C+LL FNY GML+V +TP V
Sbjct: 1218 VLVEIPYSLFQSIVYVIIVYPMVGYHWSIFKVFWSFYSIFCSLLIFNYFGMLLVVVTPNV 1277

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             VA  L  SFYS++NLF G+ + KP    WWI  YYL PTSWVLNG+L+SQYGD +KEI 
Sbjct: 1278 HVAFTLRSSFYSIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEIL 1337

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+ K +S FL+DYFG+ YD L +V +V I FP++LASLFA FIG KLNFQ+ 
Sbjct: 1338 AFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPVLLASLFAFFIG-KLNFQKK 1390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75326879|sp|Q7PC81.1|AB43G_ARATH RecName: Full=ABC transporter G family member 43; Short=ABC transporter ABCG.43; Short=AtABCG43; AltName: Full=Putative pleiotropic drug resistance protein 15 gi|28144331|tpg|DAA00883.1| TPA_exp: PDR15 ABC transporter [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 123/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y   Q++IYVII YPM+           S+Y + C+LL FNY GML+V +TP V
Sbjct: 1218 VLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNV 1277

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  SFY+++NLF G+ + KP    WWI  YYL PTSWVLNG+L+SQYGD +KEI 
Sbjct: 1278 HIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEIL 1337

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+ K +S+FL+DYFG+ YD L +V +V I FPI+LASLFA FIG KLNFQ+ 
Sbjct: 1338 AFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIG-KLNFQKK 1390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511823|ref|NP_680694.2| ABC transporter G family member 43 [Arabidopsis thaliana] gi|332658174|gb|AEE83574.1| ABC transporter G family member 43 [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 123/174 (70%), Gaps = 16/174 (9%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMI-----------SYYCMLCNLLYFNYMGMLIVSLTPGV 49
            VLVE+ Y   Q++IYVII YPM+           S+Y + C+LL FNY GML+V +TP V
Sbjct: 1216 VLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNV 1275

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             +A  L  SFY+++NLF G+ + KP    WWI  YYL PTSWVLNG+L+SQYGD +KEI 
Sbjct: 1276 HIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEIL 1335

Query: 106  IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159
             FG+ K +S+FL+DYFG+ YD L +V +V I FPI+LASLFA FIG KLNFQ+ 
Sbjct: 1336 AFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIG-KLNFQKK 1388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2084081	1450	ABCG37 "ATP-binding cassette G	0.987	0.108	0.502	4.7e-38
TAIR|locus:2049867	1413	ABCG33 "ATP-binding cassette G	0.987	0.111	0.450	7.9e-36
TAIR|locus:2025931	1469	PEN3 "PENETRATION 3" [Arabidop	0.981	0.106	0.356	7.2e-24
TAIR|locus:2094952	1416	ABCG29 "ATP-binding cassette G	0.987	0.110	0.337	6.2e-23
TAIR|locus:2037703	1442	ABCG35 "ATP-binding cassette G	0.981	0.108	0.350	1.3e-22
TAIR|locus:2045683	1426	ABCG31 "ATP-binding cassette G	0.981	0.109	0.337	5.2e-21
TAIR|locus:2044893	1453	ABCG34 "ATP-binding cassette G	0.981	0.107	0.388	1.8e-20
TAIR|locus:2196593	1423	ABCG40 "ATP-binding cassette G	0.968	0.108	0.310	7.7e-20
TAIR|locus:2019693	1454	ABCG39 "ATP-binding cassette G	0.987	0.107	0.356	1.3e-19
TAIR|locus:2039523	1420	ABCG32 "ATP-binding cassette G	0.987	0.110	0.32	1.2e-16

TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 4.7e-38, P = 4.7e-38
 Identities = 87/173 (50%), Positives = 111/173 (64%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISYY-----------CMLCNLLYFNYMGMLIVSLTPGV 49
             V+ E+ Y+FIQA  +VI+TYPMI +Y            M C+LL FNY+ M +VS+TP  
Sbjct:  1278 VVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNF 1337

Query:    50 QVASILTFSFYSMLNLFCGFTITK---P-WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
              VA+IL   FY   NLF GF I +   P WWI  YYL PTSW LNG +SSQYGD  +EI+
Sbjct:  1338 MVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEIN 1397

Query:   106 IFGKTKTISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
             +FG++ T++ FL DYFGF++DLL             LAS+FA F+G KLNFQR
Sbjct:  1398 VFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVG-KLNFQR 1449

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 7.9e-36, P = 7.9e-36
 Identities = 78/173 (45%), Positives = 109/173 (63%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISYYC-----------MLCNLLYFNYMGMLIVSLTPGV 49
             V+ E+ Y+FIQ+  +VI+ YPMI +Y            M CNLL FNY+ M ++S+TP  
Sbjct:  1241 VVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNF 1300

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
              VA+IL   F++  N+F GF I KP    WW+  YY+ PTSW LN   SSQYGD  ++I+
Sbjct:  1301 MVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKIN 1360

Query:   106 IFGKTKTISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
              FG+TKT++SFL+DYFGF++D L             LA+++A F+  KLNFQ+
Sbjct:  1361 AFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVA-KLNFQK 1412

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 7.2e-24, P = 7.2e-24
 Identities = 62/174 (35%), Positives = 90/174 (51%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
             V  E+ Y+ IQ V Y +I Y M+ +           +    + LY+ Y GM+ VSLTP  
Sbjct:  1295 VTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQ 1354

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             QVASI   +FY + NLF GF I +P    WWI  Y++CP +W + G++ SQYGD +  I 
Sbjct:  1355 QVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQ 1414

Query:   106 IFGKTK--TISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQ 157
             + G     T+  +++D++GF  D +              A +FA  I   LNFQ
Sbjct:  1415 VLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCI-RTLNFQ 1467

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA;IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0015691 "cadmium ion transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 6.2e-23, P = 6.2e-23
 Identities = 59/175 (33%), Positives = 92/175 (52%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMIS-----------YYCMLCNLLYFNYMGMLIVSLTPGV 49
             V+ E+ Y+ IQ   Y +I Y M+            Y+    + LYF Y GM+ V+LTP  
Sbjct:  1242 VVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQ 1301

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             QVA++   +FY + NLF GF I +P    WWI  Y++CP +W + G++ SQYGD +  I 
Sbjct:  1302 QVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIK 1361

Query:   106 IFGKTK--TISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
             + G     TI  ++++++G++ D +              A +FA  I   LNFQ+
Sbjct:  1362 VPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGI-RTLNFQQ 1415

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015850 "organic hydroxy compound transport" evidence=IDA

GO:1901140 "p-coumaryl alcohol transport" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 61/174 (35%), Positives = 90/174 (51%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISY--------YCMLCN---LLYFNYMGMLIVSLTPGV 49
             V  E+ Y+ IQ   Y +I Y M+ +        + +  N    LY+ Y GM+ VSLTP  
Sbjct:  1268 VTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQ 1327

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             QVASI   +FY + NLF GF I +P    WW+  Y++CP +W + G+++SQYGD +  I+
Sbjct:  1328 QVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIA 1387

Query:   106 IFGKTK--TISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQ 157
             + G     T+  ++ D +GF  D +              A +FA  I   LNFQ
Sbjct:  1388 LLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCI-KTLNFQ 1440

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 58/172 (33%), Positives = 88/172 (51%)

Query:     2 LVEVSYLFIQAVIYVIITYPMISY---------YC--MLCNLLYFNYMGMLIVSLTPGVQ 50
             LVE+ Y+  Q ++Y +ITY  I +         Y   M     YF + GM+ V LTP   
Sbjct:  1255 LVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQH 1314

Query:    51 VASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI 106
             +A++++ +FYS+ NL  GF + KP    WWI  YY+CP +W L G++ SQ GD +  I+ 
Sbjct:  1315 LAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINE 1374

Query:   107 FGKTKTISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
                  T+  F++ YFG+  +++               S FA  +   LNFQR
Sbjct:  1375 PLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSV-KYLNFQR 1425

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 68/175 (38%), Positives = 87/175 (49%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
             V VE+ Y  IQ  +Y +I Y MI Y           Y ML   +YF   GM++V+LTP  
Sbjct:  1280 VAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNY 1339

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             Q+A I    F S  NLF GF I +P    WW   Y+  P +W L GI++SQ GD D  + 
Sbjct:  1340 QIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVH 1399

Query:   106 IFGK-TKTISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNK-LNFQR 158
             I G    ++ + L + FGF+YD L             L  LFA   G K LNFQR
Sbjct:  1400 ITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWI--LIFLFAFAYGIKFLNFQR 1452

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 54/174 (31%), Positives = 93/174 (53%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
             V +E+ Y+ +QA++Y +I Y MI +           + M  + L F + GM+ V++TP  
Sbjct:  1253 VFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNH 1312

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
              +AS+++ +FY + NLF GF I +P    WW   Y+LCP +W L G+++SQ+GD  + ++
Sbjct:  1313 HIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMA 1372

Query:   106 IFGKTKTISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNK-LNFQR 158
                   ++  F+ +++G+    L              A +FA  IG K  NFQ+
Sbjct:  1373 --DSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFA--IGIKSFNFQK 1422

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015692 "lead ion transport" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;TAS

GO:0010193 "response to ozone" evidence=IEP

GO:0046865 "terpenoid transport" evidence=IDA

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 62/174 (35%), Positives = 86/174 (49%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMIS-----------YYCMLCNLLYFNYMGMLIVSLTPGV 49
             V VE+ Y  IQ  +Y +I Y MI            YY ML + +YF   GM++++LTP  
Sbjct:  1281 VAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNY 1340

Query:    50 QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
             Q+A I    F S+ NLF GF I +P    WW   Y+  P +W L G+++SQ GD D  + 
Sbjct:  1341 QIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVH 1400

Query:   106 IFGKTKT-ISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
             I G     + + L + FGF +D L                +FA+ I   LNFQR
Sbjct:  1401 ISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGI-KFLNFQR 1453

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS;IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 56/175 (32%), Positives = 84/175 (48%)

Query:     1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGV 49
             V +E  Y+  Q+ IY  I Y M ++           + M  +++YF + GM+  ++TP  
Sbjct:  1246 VFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNH 1305

Query:    50 QVASILTFSFYSMLNLFCGFTITK---PWWIRAYYLC-PTSWVLNGILSSQYGDTDKEIS 105
              VASI+   FY + NLF GF I     P W R YY   P +W L G+L SQYGD ++ + 
Sbjct:  1306 NVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVK 1365

Query:   106 IF-GKTKT-ISSFLDDYFGFNYDLLXXXXXXXXXXXXXLASLFAHFIGNKLNFQR 158
             +  G  +  +   L+D  G+ +D L              + +FA  I    NFQR
Sbjct:  1366 LSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAI-KAFNFQR 1419


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.144   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       146   0.00079  103 3  11 21  0.49    30
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.48u 0.19s 14.67t   Elapsed:  00:00:01
  Total cpu time:  14.48u 0.19s 14.67t   Elapsed:  00:00:01
  Start:  Fri May 10 23:25:30 2013   End:  Fri May 10 23:25:31 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042335 "cuticle development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_409000001 hypothetical protein (1406 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-37
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	9e-18
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	6e-08

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  134 bits (338), Expect = 4e-37
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 18/174 (10%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMIS-----------YYCMLCNLLYFNYMGMLIVSLTPGV 49
            V+ E+ Y+ IQ   Y +I Y M++           Y+    + LYF Y GM+ VSLTP  
Sbjct: 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQ 1355

Query: 50   QVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105
            QVA+I   +FY + NLF GF I +P    WW+  Y++CP +W + G++ SQYGD +  I 
Sbjct: 1356 QVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIK 1415

Query: 106  IFGKTK--TISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQ 157
            + G     TI  ++ D++G++ D +G V  V + F +  A +FA  I   LNFQ
Sbjct: 1416 VPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCI-RTLNFQ 1468

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 79.0 bits (195), Expect = 9e-18
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 22/127 (17%)

Query: 1    VLVEVSYLFIQAVIYVIITYPMISYYC----------------MLCNL--LYFNYMGMLI 42
            + VE+ Y  +   I+  I Y  + +Y                 +L  +  LYF+ +G ++
Sbjct: 1178 ITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMV 1237

Query: 43   VSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYG 98
            +S  P    A++L    ++M   FCG          +WI  Y   P ++++  +LS+   
Sbjct: 1238 ISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLA 1297

Query: 99   DTDKEIS 105
            D      
Sbjct: 1298 DVPVTCK 1304

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 1   VLVEVSYLFIQAVIYVIITYPMISYY---------CMLCNLLYFNYMGMLIVSLTPGVQV 51
           +LVE+    +QA+I+++I Y M+             +L   L  + +G+ I +L P  + 
Sbjct: 101 ILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFED 160

Query: 52  ASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQY 97
           AS +       L L  GF I       W    YYL P ++ +  + ++++
Sbjct: 161 ASQIGPLLLLPLLLLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210

Length = 210

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PLN03140	1470	ABC transporter G family member; Provisional	99.98
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.96
PLN03211	659	ABC transporter G-25; Provisional	99.96
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.95
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.94
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.93
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.89
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.16
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	98.89
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	98.82
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	98.67
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	98.43
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.33
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	98.21
COG0842	286	ABC-type multidrug transport system, permease comp	98.21
PRK15066	257	inner membrane transport permease; Provisional	98.2
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	97.74
TIGR01248	152	drrC daunorubicin resistance protein C. The model	97.25
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	95.35
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	94.51
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	93.33
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	90.71
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	89.6
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	84.51
COG1511	780	Predicted membrane protein [Function unknown]	81.62

>PLN03140 ABC transporter G family member; Provisional

Probab=99.98  E-value=8e-32  Score=245.04  Aligned_cols=158  Identities=41%  Similarity=0.893  Sum_probs=145.2

Q ss_pred             CchhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125            1 VLVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF   69 (159)
Q Consensus         1 ~~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf   69 (159)
                      +++|+|+.++.+++|++|+|||+|+      |+.     ++..++++++|+++++++||.+.|..+++++..++++|+||
T Consensus      1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140       1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence            3689999999999999999999999      322     33456788999999999999999999999999999999999


Q ss_pred             ccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccC--CCccHHHHHHhhcCCcccCccchhhhHHhHHHHHH
Q 037125           70 TITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFG--KTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLA  143 (159)
Q Consensus        70 ~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~  143 (159)
                      ++|++    ||+|++|+||++|+++|++.|||+|.+.+|++++  ++.++++++++++|++++++|.++++++++.++|+
T Consensus      1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1455 (1470)
T PLN03140       1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFA 1455 (1470)
T ss_pred             ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHH
Confidence            99987    9999999999999999999999999888777665  34688999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccCC
Q 037125          144 SLFAHFIGNKLNFQRS  159 (159)
Q Consensus       144 ~l~~~~l~~~~~~~kr  159 (159)
                      +++++++| ++||+||
T Consensus      1456 ~~~~~~~~-~~~~q~r 1470 (1470)
T PLN03140       1456 FIFAFCIR-TLNFQTR 1470 (1470)
T ss_pred             HHHHHHHH-HhhcccC
Confidence            99999999 9999998

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.97  E-value=2.8e-30  Score=219.91  Aligned_cols=157  Identities=20%  Similarity=0.213  Sum_probs=135.4

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH------HHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY------YCML-----CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT   70 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~-----~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~   70 (159)
                      ++|+|..++.+++|++|+|||+|+      |+.+     +..++++++|+++++++||.+.|+.+++++..++++|+||+
T Consensus       442 l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~  521 (617)
T TIGR00955       442 IAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFF  521 (617)
T ss_pred             HHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence            689999999999999999999998      3332     23456788999999999999999999999999999999999


Q ss_pred             cCcc----chhhhhccchHHHHHHHHHHhhhCCCcc-cccccCCCc---cHHHHHHhhcCCcccCccchhhhHHhHHHHH
Q 037125           71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDK-EISIFGKTK---TISSFLDDYFGFNYDLLGVVGIVPIIFPIVL  142 (159)
Q Consensus        71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~-~~~~~~~~~---~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~  142 (159)
                      ++++    ||+|++|+||++|++||++.|||++.+. +|...+.+.   ..|+++++.+|++.++.|.|+++++++.++|
T Consensus       522 i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~  601 (617)
T TIGR00955       522 INSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFF  601 (617)
T ss_pred             cChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            9886    9999999999999999999999998764 443211111   1267888899999889999999999999999


Q ss_pred             HHHHHHHHHhhhcccCC
Q 037125          143 ASLFAHFIGNKLNFQRS  159 (159)
Q Consensus       143 ~~l~~~~l~~~~~~~kr  159 (159)
                      +++++++|| +..+++|
T Consensus       602 ~~l~~~~L~-~~~~~~~  617 (617)
T TIGR00955       602 RLLAYFALR-IRIRRKR  617 (617)
T ss_pred             HHHHHHHHH-HHhhccC
Confidence            999999999 7777766

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=3.5e-28  Score=221.43  Aligned_cols=153  Identities=20%  Similarity=0.267  Sum_probs=131.1

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH------HHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY------YCMLC-----NLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT   70 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~~-----~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~   70 (159)
                      ++|+|..++.+++|++|+|||+||      |+.++     ..+++++++.++++++||...|+.++++.++++++|+||+
T Consensus       619 l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~  698 (1470)
T PLN03140        619 LLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFI  698 (1470)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccce
Confidence            689999999999999999999999      44333     3456778999999999999999999999999999999999


Q ss_pred             cCcc----chhhhhccchHHHHHHHHHHhhhCCCccc-ccccCCCccHHHHHHhhcCCccc--CccchhhhHHhHHHHHH
Q 037125           71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKE-ISIFGKTKTISSFLDDYFGFNYD--LLGVVGIVPIIFPIVLA  143 (159)
Q Consensus        71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~w~~~~il~~~~~~~~  143 (159)
                      ++++    ||+|++|+||++||+||++.|||.+.+.+ +.+.+...+.|+.+++.+|++.+  +.|.++++|++++++|+
T Consensus       699 i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~  778 (1470)
T PLN03140        699 LPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFN  778 (1470)
T ss_pred             echHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHH
Confidence            9987    99999999999999999999999876533 11112234557777788999765  56999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 037125          144 SLFAHFIGNKLN  155 (159)
Q Consensus       144 ~l~~~~l~~~~~  155 (159)
                      ++++++|+ +++
T Consensus       779 ~l~~l~L~-~~~  789 (1470)
T PLN03140        779 VLFTLALT-YLN  789 (1470)
T ss_pred             HHHHHHHH-hcC
Confidence            99999999 776

>PLN03211 ABC transporter G-25; Provisional

Probab=99.96  E-value=1.3e-28  Score=210.77  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=124.7

Q ss_pred             CchhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125            1 VLVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF   69 (159)
Q Consensus         1 ~~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf   69 (159)
                      +++|+|+.++.+++|++|+|||+||      |+.     ++..++++++|+++++++||.+.|+.++++++.++++|+||
T Consensus       487 ~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf  566 (659)
T PLN03211        487 IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF  566 (659)
T ss_pred             HHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhh
Confidence            3689999999999999999999999      332     33456788999999999999999999999999999999999


Q ss_pred             ccCcc---chhhhhccchHHHHHHHHHHhhhCCCcc-----cccccCC--CccHHHHHHhhcCCcccCccchhhhHHhHH
Q 037125           70 TITKP---WWIRAYYLCPTSWVLNGILSSQYGDTDK-----EISIFGK--TKTISSFLDDYFGFNYDLLGVVGIVPIIFP  139 (159)
Q Consensus        70 ~i~~~---~~~W~~yisp~~ya~~~l~~nef~~~~~-----~~~~~~~--~~~~~~~~~~~~g~~~~~~w~~~~il~~~~  139 (159)
                      +++ +   ||+|++|+||++|++||++.|||++.+.     +|+.+.+  ...|.  .....++++.+.|.|+++|+++.
T Consensus       567 ~i~-~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~--~~~~~~~~~~~~~~~~~~l~~~~  643 (659)
T PLN03211        567 YVH-KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK--FVEEDVAGQISPATSVSVLIFMF  643 (659)
T ss_pred             hHh-hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc--cchhhhhcccchHHHHHHHHHHH
Confidence            997 4   9999999999999999999999987643     3422211  11121  12223444567999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 037125          140 IVLASLFAHFIGNKLNF  156 (159)
Q Consensus       140 ~~~~~l~~~~l~~~~~~  156 (159)
                      ++||+++|++|| ++||
T Consensus       644 ~~~~~l~~~~L~-~~~~  659 (659)
T PLN03211        644 VGYRLLAYLALR-RIKH  659 (659)
T ss_pred             HHHHHHHHHHHH-hccC
Confidence            999999999999 7765

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.95  E-value=4.5e-28  Score=220.55  Aligned_cols=154  Identities=17%  Similarity=0.256  Sum_probs=133.3

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH------HHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY------YCML-----CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT   70 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~-----~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~   70 (159)
                      ++|+|+.++.+++|++|+|||+||      |+.+     +..+++.+++.++++++||.+.|+.++++.+.++++|+||+
T Consensus       502 l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~  581 (1394)
T TIGR00956       502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA  581 (1394)
T ss_pred             HHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccc
Confidence            689999999999999999999999      4432     23445678999999999999999999999999999999999


Q ss_pred             cCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc--cC-------------C---------C-ccHHHHHHhhc
Q 037125           71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI--FG-------------K---------T-KTISSFLDDYF  121 (159)
Q Consensus        71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~--~~-------------~---------~-~~~~~~~~~~~  121 (159)
                      +|++    ||+|++|+||++|++||++.|||++.+.+|+.  |.             |         . .++++++.+.+
T Consensus       582 i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~  661 (1394)
T TIGR00956       582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSF  661 (1394)
T ss_pred             cChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcC
Confidence            9987    99999999999999999999999998877741  10             0         1 13456776678


Q ss_pred             CCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcc
Q 037125          122 GFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNF  156 (159)
Q Consensus       122 g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~  156 (159)
                      |++++++|+|++++++++++|+++++++++ ++++
T Consensus       662 ~~~~~~~w~n~gil~~~~v~f~~~~~l~l~-~~~~  695 (1394)
T TIGR00956       662 QYYNSHKWRNFGIIIGFTVFFFFVYILLTE-FNKG  695 (1394)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHH-hccc
Confidence            999999999999999999999999999999 7763

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.95  E-value=5.6e-27  Score=213.47  Aligned_cols=157  Identities=20%  Similarity=0.312  Sum_probs=130.7

Q ss_pred             CchhhhHHHHHHHHHHHHHhhhhhH-------------HH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 037125            1 VLVEVSYLFIQAVIYVIITYPMISY-------------YC-----MLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSM   62 (159)
Q Consensus         1 ~~~elP~~~i~~~if~~i~Y~~~gl-------------f~-----~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~   62 (159)
                      +++|+|+.++.+++|.+++|||+|+             |+     .++..++++++|+++++++||.+.|+.+++++..+
T Consensus      1178 ~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~ 1257 (1394)
T TIGR00956      1178 ITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTM 1257 (1394)
T ss_pred             HHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence            3689999999999999999999997             22     12334567899999999999999999999999999


Q ss_pred             HHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc-------cCCCccH------------------
Q 037125           63 LNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI-------FGKTKTI------------------  113 (159)
Q Consensus        63 ~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~-------~~~~~~~------------------  113 (159)
                      +++|||++++++    ||+|++|+||++|++||++.|||++.+.+|..       |+.+++|                  
T Consensus      1258 ~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~ 1337 (1394)
T TIGR00956      1258 CLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNP 1337 (1394)
T ss_pred             HHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCC
Confidence            999999999987    99999999999999999999999998765532       1122333                  


Q ss_pred             -------------HHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccCC
Q 037125          114 -------------SSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS  159 (159)
Q Consensus       114 -------------~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~kr  159 (159)
                                   |+..++.+|++.+++|+|+++++++++++ ++++++++ ++.+.+|
T Consensus      1338 ~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~-~~~r~~k 1394 (1394)
T TIGR00956      1338 NATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFY-WLARVPK 1394 (1394)
T ss_pred             CCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhh-eEEEcCC
Confidence                         34445678998899999999999999977 88888888 6554443

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=6.1e-26  Score=192.81  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=133.6

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT   70 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~   70 (159)
                      ++|+|+.++.+++|.+++|||+|+      |+.     ++..+.++++|++++++.||...|..+++++...+++++||+
T Consensus       439 l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~f  518 (613)
T KOG0061|consen  439 LAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFF  518 (613)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhh
Confidence            579999999999999999999998      322     334567889999999999999999999999999999999999


Q ss_pred             cCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc--CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHH
Q 037125           71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF--GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLAS  144 (159)
Q Consensus        71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~  144 (159)
                      ++.+    ||+|++|+|++||++||++.|||++...+|...  .+....++..++..++++++.|.|+.++.++.++||+
T Consensus       519 i~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~i  598 (613)
T KOG0061|consen  519 INFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRV  598 (613)
T ss_pred             cCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHH
Confidence            9987    999999999999999999999999733334221  2233445666678999999999999999999999999


Q ss_pred             HHHHHHHhhhcccCC
Q 037125          145 LFAHFIGNKLNFQRS  159 (159)
Q Consensus       145 l~~~~l~~~~~~~kr  159 (159)
                      ++|++|| +..+++|
T Consensus       599 l~y~~L~-~~~~~~~  612 (613)
T KOG0061|consen  599 LGYLALR-FRVKRKR  612 (613)
T ss_pred             HHHHHHH-hhccccC
Confidence            9999999 6555543

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=8.3e-26  Score=199.18  Aligned_cols=155  Identities=19%  Similarity=0.336  Sum_probs=132.3

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH------HHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY------YCMLCN-----LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT   70 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~~~-----~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~   70 (159)
                      +.|+|..++.+++|.+|+||++|+      ||.+++     ..++.++..++++++|+...|+.++++.++...+++||.
T Consensus       541 l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~  620 (1391)
T KOG0065|consen  541 LLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFV  620 (1391)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHccee
Confidence            579999999999999999999999      544332     334667888999999999999999999999999999999


Q ss_pred             cCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccC--------CC--------------ccHHHHHHhhcCCc
Q 037125           71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFG--------KT--------------KTISSFLDDYFGFN  124 (159)
Q Consensus        71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~--------~~--------------~~~~~~~~~~~g~~  124 (159)
                      ||++    ||+|++|+||+.|++|+++.|||++++.+|...+        .+              ..+.++++..|+++
T Consensus       621 Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~  700 (1391)
T KOG0065|consen  621 IPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYE  700 (1391)
T ss_pred             eeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccc
Confidence            9987    8999999999999999999999999998886111        01              12345666667777


Q ss_pred             ccCccchhhhHHhHHHHHHHHHHHHHHhhhccc
Q 037125          125 YDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQ  157 (159)
Q Consensus       125 ~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~  157 (159)
                      +++.|+++++++++.++|.++..+++. ++|..
T Consensus       701 ~~~~Wr~~gillgf~v~f~~~~~ia~~-yl~p~  732 (1391)
T KOG0065|consen  701 YKWYWRNFGILLGFTVFFNFVFLIALE-YLKPL  732 (1391)
T ss_pred             cceeEeehhHHHHHHHHHHHHHHHHHH-hcCcc
Confidence            889999999999999999999999999 88853

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=4.2e-23  Score=182.26  Aligned_cols=158  Identities=37%  Similarity=0.668  Sum_probs=136.8

Q ss_pred             CchhhhHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125            1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF   69 (159)
Q Consensus         1 ~~~elP~~~i~~~if~~i~Y~~~gl-----------f~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf   69 (159)
                      +++|+|+.++++.+|.+++|+++|+           ++.+++.+..+++|+++.+++||.+.|..+.+.+.+++.+|||+
T Consensus      1204 ~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~ 1283 (1391)
T KOG0065|consen 1204 VLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGF 1283 (1391)
T ss_pred             HHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccc
Confidence            3689999999999999999999999           12344456678999999999999999999999999999999999


Q ss_pred             ccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc-------cCCCccHHHHHHhhcC----CcccCccchhhh
Q 037125           70 TITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI-------FGKTKTISSFLDDYFG----FNYDLLGVVGIV  134 (159)
Q Consensus        70 ~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~-------~~~~~~~~~~~~~~~g----~~~~~~w~~~~i  134 (159)
                      ++|++    ||+|+||+||.+|..+|+...+++|.+.+|..       |.++++||+++++.+|    +.++..-....+
T Consensus      1284 l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~ 1363 (1391)
T KOG0065|consen 1284 LQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACV 1363 (1391)
T ss_pred             ccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEE
Confidence            99987    99999999999999999999999998866643       3367899999999999    666655555567


Q ss_pred             HHhHHHHHHHHHHHHHHhhhcccCC
Q 037125          135 PIIFPIVLASLFAHFIGNKLNFQRS  159 (159)
Q Consensus       135 l~~~~~~~~~l~~~~l~~~~~~~kr  159 (159)
                      .+.+.+.+..++.+..| +.++.||
T Consensus      1364 ~c~y~v~~~~l~~f~~~-y~~~wrn 1387 (1391)
T KOG0065|consen 1364 YCAYTVADAFLAAFNIK-YLNFWRN 1387 (1391)
T ss_pred             EeeeehHHHHHHHHHHH-HHHHHHh
Confidence            77788899999999999 8877765

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.16  E-value=5.4e-10  Score=83.25  Aligned_cols=123  Identities=15%  Similarity=0.047  Sum_probs=91.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhH----H-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc
Q 037125            3 VEVSYLFIQAVIYVIITYPMISY----Y-----CMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK   73 (159)
Q Consensus         3 ~elP~~~i~~~if~~i~Y~~~gl----f-----~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~   73 (159)
                      ...+..++++.+...+.|+..|+    +     ...+..+...++|..+++..++.+.+.  ......+.+.++|.+.|.
T Consensus        69 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~~~~~~~sG~~~P~  146 (208)
T TIGR03062        69 PGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLLVLQLGSSGGTFPI  146 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHHHHHHccCCCccch
Confidence            45677888888888888888887    2     123334566788899999998765443  334455666778888888


Q ss_pred             c----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHH
Q 037125           74 P----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHF  149 (159)
Q Consensus        74 ~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~  149 (159)
                      +    |++|+.+++|.+|+.|++....+++.                        .++.|.+++++.++.+++..++...
T Consensus       147 ~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~L~~~~~v~~~la~~~  202 (208)
T TIGR03062       147 ELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------DGTLWQAVAVLLLILVVFLALSLLS  202 (208)
T ss_pred             hhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7    99999999999999999977666442                        1235678889999988887777776


Q ss_pred             HH
Q 037125          150 IG  151 (159)
Q Consensus       150 l~  151 (159)
                      .|
T Consensus       203 ~~  204 (208)
T TIGR03062       203 AR  204 (208)
T ss_pred             Hh
Confidence            66

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=98.89  E-value=6.5e-08  Score=73.38  Aligned_cols=124  Identities=12%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH----H-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY----Y-----CMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTIT   72 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl----f-----~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~   72 (159)
                      +.+++..++...+...+.++..+.    .     ......+...++|..+++..+|.+.++.+.+....+...+||.+.|
T Consensus        98 l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P  177 (236)
T TIGR01247        98 LGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYP  177 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            356777888888888888877665    1     1122233457899999999999999999999999999999999998


Q ss_pred             cc----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHH
Q 037125           73 KP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAH  148 (159)
Q Consensus        73 ~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~  148 (159)
                      .+    |++|+.+.+|.+|+.|++.....++..                       ..+.+.+++++..+.+++..++..
T Consensus       178 ~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       178 ITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP-----------------------TFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             HHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc-----------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence            87    889999999999999997654332221                       123456778888888777666543

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.82  E-value=2.9e-10  Score=83.68  Aligned_cols=96  Identities=21%  Similarity=0.417  Sum_probs=82.9

Q ss_pred             chhhhHHHHHHHHHHHHHhhhhhH-H---HH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Q 037125            2 LVEVSYLFIQAVIYVIITYPMISY-Y---CM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTIT   72 (159)
Q Consensus         2 ~~elP~~~i~~~if~~i~Y~~~gl-f---~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~   72 (159)
                      +.+++..++.++++..+.|.+.|+ .   ..     .+..+++.++|..+++++++.+.+..+.+....+.+.+||.+.|
T Consensus       102 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p  181 (210)
T PF01061_consen  102 LSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGVFFP  181 (210)
T ss_pred             cccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhhhhhhhhhcccccccceeeecc
Confidence            467888889999999999999887 2   21     22344567799999999999999999999999999999999999


Q ss_pred             cc----chhhhhccchHHHHHHHHHHhhh
Q 037125           73 KP----WWIRAYYLCPTSWVLNGILSSQY   97 (159)
Q Consensus        73 ~~----~~~W~~yisp~~ya~~~l~~nef   97 (159)
                      .+    |++|+.++||++|+.|++..++|
T Consensus       182 ~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  182 LSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            87    88999999999999999999876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=98.67  E-value=4.2e-07  Score=68.85  Aligned_cols=96  Identities=11%  Similarity=0.019  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccc
Q 037125           33 LYFNYMGMLIVSLT---PGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS  105 (159)
Q Consensus        33 l~~~s~~~~i~~~~---~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~  105 (159)
                      ..+..++.+++++.   ++.+.+..+.+....+...+||.+.|.+    |++|+.+++|++|+.+++.....++..    
T Consensus       127 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~----  202 (232)
T TIGR00025       127 ALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVD----  202 (232)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCC----
Confidence            44556666666666   4455558888888899999999999987    999999999999999988654333211    


Q ss_pred             ccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125          106 IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG  151 (159)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~  151 (159)
                                         .+..|.+++.+.++.+++..++....|
T Consensus       203 -------------------~~~~~~~~~~l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       203 -------------------TFGAVRDLVVVLAFWVALAALAAIRLR  229 (232)
T ss_pred             -------------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                               134566777888887776666655554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=98.43  E-value=8.1e-06  Score=62.82  Aligned_cols=96  Identities=14%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc
Q 037125           32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF  107 (159)
Q Consensus        32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~  107 (159)
                      .+...++|.++++..++.+.+..+.+....+++..||.+.|.+    |++++.+.||++|+.|++-...+++..      
T Consensus       149 ~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~~------  222 (253)
T TIGR01291       149 GLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGPG------  222 (253)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCCc------
Confidence            3445679999999999999999999999999999999999887    889999999999999997655433211      


Q ss_pred             CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125          108 GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG  151 (159)
Q Consensus       108 ~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~  151 (159)
                                        .+.|.+++++.++.+++..++....|
T Consensus       223 ------------------~~~~~~~~~l~~~~vv~~~la~~~fr  248 (253)
T TIGR01291       223 ------------------TQVGLHLGALCLYAVVPFFISAALLR  248 (253)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              12345677888888777666665555

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.33  E-value=8.3e-07  Score=59.37  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             ccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125          111 KTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR  158 (159)
Q Consensus       111 ~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k  158 (159)
                      .++.+|+...++++.+++|+|++|+++++++|.++.+++++ +++.+|
T Consensus        31 V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e-~~~~~~   77 (103)
T PF06422_consen   31 VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATE-FIKFEK   77 (103)
T ss_pred             EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHH-HhcccC
Confidence            45778898899999999999999999999999999999999 877653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.21  E-value=4.8e-06  Score=50.77  Aligned_cols=49  Identities=14%  Similarity=0.032  Sum_probs=42.7

Q ss_pred             CCccHHHHHHhhcCCccc--CccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125          109 KTKTISSFLDDYFGFNYD--LLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR  158 (159)
Q Consensus       109 ~~~~~~~~~~~~~g~~~~--~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k  158 (159)
                      ++.|.|+.+++.+|+..+  +.|..+++|+++.++|+++..++|. +++...
T Consensus         8 ~~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~-yL~p~~   58 (65)
T PF08370_consen    8 NNSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALT-YLNPLG   58 (65)
T ss_pred             CCCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHH-hcCCcC
Confidence            357889999999999765  6888999999999999999999999 888653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.21  E-value=7.7e-05  Score=56.85  Aligned_cols=100  Identities=17%  Similarity=0.260  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc
Q 037125           32 LLYFNYMGMLIV-SLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI  106 (159)
Q Consensus        32 ~l~~~s~~~~i~-~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~  106 (159)
                      .+...++|.+++ ...++.+.+..+++....+...++|.+.|.+    +.+|+.+++|.+|+.|++.....++...    
T Consensus       179 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~----  254 (286)
T COG0842         179 LLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN----  254 (286)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----
Confidence            344566777555 3667778888889899999999999999987    7899999999999999997666544321    


Q ss_pred             cCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhc
Q 037125          107 FGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLN  155 (159)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~  155 (159)
                                         ++.|.+.+++.++.+++..++...+| +.+
T Consensus       255 -------------------~~~~~~~~~l~~~~~v~~~~~~~~~~-~~~  283 (286)
T COG0842         255 -------------------DGIWISLLILLLFAVVFLLLGLLLLR-RRR  283 (286)
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence                               22677888999999988888888888 443

>PRK15066 inner membrane transport permease; Provisional

Probab=98.20  E-value=7.1e-05  Score=57.60  Aligned_cols=91  Identities=18%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCcc
Q 037125           37 YMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKT  112 (159)
Q Consensus        37 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~  112 (159)
                      ..|..+++..++.+..+.+.+....+.+..||.+.|.+    |++|+.+.||++|..|++-..-.++.            
T Consensus       156 ~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~------------  223 (257)
T PRK15066        156 LGGLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS------------  223 (257)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC------------
Confidence            34788888889988899999999999999999988876    88999999999999999875433211            


Q ss_pred             HHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125          113 ISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG  151 (159)
Q Consensus       113 ~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~  151 (159)
                                  ..+.|.+++++.++.++...++....|
T Consensus       224 ------------~~~~~~~l~~l~~~~~v~~~la~~~~~  250 (257)
T PRK15066        224 ------------DVPLWLAFAVLLVFIVVLYLLAWYLLE  250 (257)
T ss_pred             ------------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        113466788888888877777777776

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=97.74  E-value=0.0011  Score=50.70  Aligned_cols=64  Identities=8%  Similarity=0.070  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc------c-chhhhhccchHHHHHHHHHHh
Q 037125           32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK------P-WWIRAYYLCPTSWVLNGILSS   95 (159)
Q Consensus        32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~------~-~~~W~~yisp~~ya~~~l~~n   95 (159)
                      .+...++|.++++.+++.+.++.+.+....+++..+|.+.|.      + |++|+.++||+.|..|++...
T Consensus       150 ~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~  220 (253)
T TIGR03861       150 AFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA  220 (253)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence            345668999999999999999999998888999999988664      2 889999999999999988643

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=97.25  E-value=0.0051  Score=43.74  Aligned_cols=56  Identities=9%  Similarity=-0.094  Sum_probs=41.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHH
Q 037125           38 MGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILS   94 (159)
Q Consensus        38 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~   94 (159)
                      ++..++...++.+. .........+....+|.+.|.+    |.+|+-+++|++|+.|++-.
T Consensus        88 l~~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R~  147 (152)
T TIGR01248        88 LVMAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACAD  147 (152)
T ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHHH
Confidence            44445444565544 4345667777778888888886    88999999999999999863

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=95.35  E-value=0.21  Score=38.82  Aligned_cols=101  Identities=11%  Similarity=-0.003  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc
Q 037125           32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF  107 (159)
Q Consensus        32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~  107 (159)
                      .+++.++|..+|++..-......+.+..+.+.+-.+|.+-+.+    .++++.+.||+.+..|+.-..-+++..      
T Consensus       159 ~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~------  232 (264)
T PRK15176        159 WLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH------  232 (264)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC------
Confidence            3445566666555442222233344455556666666554443    678888899999999998777665421      


Q ss_pred             CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125          108 GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR  158 (159)
Q Consensus       108 ~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k  158 (159)
                                         ..|.+.....++.++..+++....| +.|.|.
T Consensus       233 -------------------~~~~~~~~~~~~~~~~l~~G~~~~~-~~~~~~  263 (264)
T PRK15176        233 -------------------SLYLEPFYPLAFSATLFLAGLIFHL-ICDTEN  263 (264)
T ss_pred             -------------------ccccChHHHHHHHHHHHHHHHHHHH-HHHhcC
Confidence                               1122335666677777777888888 666553

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=94.51  E-value=0.01  Score=46.09  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHh
Q 037125           31 NLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSS   95 (159)
Q Consensus        31 ~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~n   95 (159)
                      ..+...+++.+++.++++...|+.+++++..+.+..+|...+.+    +++++.++.|..+..+++...
T Consensus       248 ~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~  316 (344)
T PF12698_consen  248 FSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNI  316 (344)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34556789999999999999998888877775555555444332    888888899999987776443

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=93.33  E-value=3.1  Score=32.40  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCc
Q 037125           30 CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTD  101 (159)
Q Consensus        30 ~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~  101 (159)
                      ...+++.+.|+.+|+++--...-..+.+.+.-+++-.+|.+=+.+    -+++....||+.+-.|..-..-+++..
T Consensus       153 ~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~  228 (263)
T COG1682         153 LLILFSVGLGLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV  228 (263)
T ss_pred             HHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc
Confidence            334566777887777765444444555566666777777766665    778999999999999999877776543

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=90.71  E-value=2.3  Score=34.71  Aligned_cols=42  Identities=14%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHH
Q 037125           75 WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIV  141 (159)
Q Consensus        75 ~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~  141 (159)
                      +.||.|=. |++.++|++.+.-|++.+                        .+..+++++|.++.++
T Consensus       338 fyr~gya~-P~~n~~~~~r~I~fd~~~------------------------~~lg~n~gil~aw~~v  379 (382)
T PF12051_consen  338 FYRYGYAM-PMHNIYEGLRVIFFDTCK------------------------GQLGRNYGILFAWIVV  379 (382)
T ss_pred             HHHHhhhh-hHHHHHHHHHHheeCCCc------------------------ccccchHHHHHHHHHH
Confidence            88999999 999999999888554322                        2456678888888765

It is found in bacterial and eukaryotic proteins.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=89.60  E-value=1.8  Score=33.07  Aligned_cols=57  Identities=14%  Similarity=-0.034  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc--c-chhhhhccchHHHH
Q 037125           32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK--P-WWIRAYYLCPTSWV   88 (159)
Q Consensus        32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~--~-~~~W~~yisp~~ya   88 (159)
                      .....++|.++|++++++..|..++......+...-+...+.  + +.+|+.|+||.+|-
T Consensus       147 ~~~~~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~  206 (240)
T TIGR03518       147 GSVYTAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASLLWGGSAYTISELGLSYHY  206 (240)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHcCHHHHH
Confidence            345668999999999998888655544332222211122222  2 67899999997664

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=84.51  E-value=15  Score=27.84  Aligned_cols=94  Identities=17%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccc---Ccc-chhh-----hhccchHHHHHHHHHHhhhCCCccccc
Q 037125           35 FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTI---TKP-WWIR-----AYYLCPTSWVLNGILSSQYGDTDKEIS  105 (159)
Q Consensus        35 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i---~~~-~~~W-----~~yisp~~ya~~~l~~nef~~~~~~~~  105 (159)
                      ..+++.++|+..+|...|...+...............   ... +..|     +++++|.++ ++....+..++...   
T Consensus       171 ~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~---  246 (277)
T PF12679_consen  171 FISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFV---  246 (277)
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccc---
Confidence            4789999999999988888777765554433333222   222 3233     366666652 22222222211100   


Q ss_pred             ccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125          106 IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG  151 (159)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~  151 (159)
                                         ....|.+++.+.++.+++..+++...+
T Consensus       247 -------------------~~~~~~~~~~~~~~~~v~l~la~~~F~  273 (277)
T PF12679_consen  247 -------------------WLSTWPSLLILLAYTLVFLALAYYRFQ  273 (277)
T ss_pred             -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                               035677888999998888888885555

>COG1511 Predicted membrane protein [Function unknown]

Probab=81.62  E-value=11  Score=33.87  Aligned_cols=79  Identities=19%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcccc--cCcc--chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHH
Q 037125           40 MLIVSLTPGVQVASILTFSFYSMLNLFCGFT--ITKP--WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISS  115 (159)
Q Consensus        40 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~--i~~~--~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~  115 (159)
                      ..+.+++.+  .+-.+.-+++.+....+|=.  +...  ++++++..-|+.|++.++-  |.-+                
T Consensus       673 ~~lv~~~g~--~g~~i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty~v~~~r--~~~~----------------  732 (780)
T COG1511         673 YLLVSLFGN--PGKFIAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVNGFR--EVIG----------------  732 (780)
T ss_pred             HHHHHHhCc--chHHHHHHHHHHHHhccccccchhccHHHHHHHHHhccHHHHHHHhH--Hhhc----------------
Confidence            344444443  33444444455555544433  3333  8899999999999955442  1111                


Q ss_pred             HHHhhcCCcccCccchhhhHHhHHHHHHH
Q 037125          116 FLDDYFGFNYDLLGVVGIVPIIFPIVLAS  144 (159)
Q Consensus       116 ~~~~~~g~~~~~~w~~~~il~~~~~~~~~  144 (159)
                            +......|.+..++.++.+++.+
T Consensus       733 ------~~~~~~~~~~~~~~~~~~i~~~~  755 (780)
T COG1511         733 ------GPIPSNLWSGLLALIGFLILFII  755 (780)
T ss_pred             ------cCchHHHhhhHHHHHHHHHHHHH
Confidence                  11123466677777777776655

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00