Citrus Sinensis ID: 037142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYAGNEENEEEDALGVM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
HHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
siasktledkkavvdhgAVPIFVKLlaspsddirMQSVWALGniaaesprfrdlVLGEAALIPLltqlnnhenlsMKRIATWTlsnlcggkprpifdqvrpclptlaqlvhsndehvmsnaCWGLsllcdggkndEIQAVIEAGVCPRLvkllghpsqsVLTQALHTvgniargdysqtlyIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIsnatfggthEQIKYLEregcikplcdlllcpdpqIVTVCLKALENILKVGeaekntdtdigdVNQYAQLVEEAKGLEKienlqrhdnyeiHEKSAKILETYWcgrvvgpqpgllyagneeneeedalgvm
Flexible Loop (DISEMBL)
siasktledkkavvdhgavPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVgeaekntdtdigDVNQYAQLVEEAKGLEkienlqrhdnyEIHEKSAKILETYWCGRVVGPQPGLlyagneeneeedalgvm
Low Complexity Region (SEG)
SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKplcdlllcpdpQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYAGNEENEEEDALGVM
Disordered region (IsUnstruct)
***********AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYA**************
Disordered Region (DISOPRED)
SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQP*********NEEEDALGVM
Disordered Region (DISEMBL)
SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYAGNEE**********
Disordered Region (DISPRO)
****KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPGLLYAGNEENEEEDALGVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.919	0.669	0.692	1e-138
Q96321	532	Importin subunit alpha-1	yes	no	0.966	0.695	0.651	1e-138
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.919	0.659	0.678	1e-136
O22478	527	Importin subunit alpha OS	N/A	no	0.921	0.669	0.667	1e-134
O04294	531	Importin subunit alpha-2	no	no	0.921	0.664	0.619	1e-124
O35345	536	Importin subunit alpha-7	yes	no	0.916	0.654	0.544	1e-97
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.916	0.654	0.544	1e-97
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.916	0.654	0.544	3e-97
O60684	536	Importin subunit alpha-7	yes	no	0.916	0.654	0.544	3e-97
Q76P29	516	Importin subunit alpha-B	yes	no	0.908	0.674	0.525	3e-96

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  493 bits (1269), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/355 (69%), Positives = 284/355 (80%), Gaps = 3/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL S SDD+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 142 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGA 201

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+Q RP LP LA+L+HSNDE V+++
Sbjct: 202 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTD 261

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD +QT 
Sbjct: 262 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 320

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            II+  ALP LL LL  N K SIK  ACW ISNITAGN++QIQAVI+AG+IGPLVNLLQ 
Sbjct: 321 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 380

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+H+QIKYL  EGCIKPLCDLL+CPD +IVTVCL+ LENIL
Sbjct: 381 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 440

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGE +K      GDVN ++Q+++EA+GLEKIENLQ HDN EI+EK+ KILE YW
Sbjct: 441 KVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/382 (65%), Positives = 292/382 (76%), Gaps = 12/382 (3%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K V+DH AVPIFV+LLASPSDD+R Q+VWALGN+A +SPR RDLVLG  A
Sbjct: 142 NIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGA 201

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP L +L+HS+DE V+++
Sbjct: 202 LLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTD 261

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQ VI+AGV P+LV+LL H S SVL  AL TVGNI  GD  QT 
Sbjct: 262 ACWALSYLSDG-TNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQ 320

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +IN GALP L  LL  NHK SIK  ACW ISNITAGN++QIQ V++A LI PLV+LLQN
Sbjct: 321 CVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQN 380

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+H+QIKYL  +GCIKPLCDLL+CPDP+I+TVCL+ LENIL
Sbjct: 381 AEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENIL 440

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR-- 358
           KVGEAEKN     GD+N YAQL+++A+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct: 441 KVGEAEKNL-GHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEED 499

Query: 359 --------VVGPQPGLLYAGNE 372
                   V G Q G  + GN+
Sbjct: 500 DETQQPPGVDGSQAGFQFGGNQ 521

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/355 (67%), Positives = 283/355 (79%), Gaps = 3/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T ++ K VV+ GAVPIFVKLL+SPS+D+R Q+VWALGN+A +SP+ RDLVL    
Sbjct: 148 NIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGG 207

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L PLL QLN H  LSM R ATWTLSN C GKP+P F+QV+P L  L +L+HS DE V+++
Sbjct: 208 LYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTD 267

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIE+GV PRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 268 ACWALSYLSDG-TNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQ 326

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +I+  ALP LL LL +NHK SIK  ACW ISNITAGNREQIQAVI+A +I PLV+LLQ 
Sbjct: 327 CVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQT 386

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTH+QIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 387 AEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 446

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGEAEKN     GDVN YAQ++++A+GLEKIENLQ HDN EI+EK+ K+LE+YW
Sbjct: 447 KVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 282/355 (79%), Gaps = 2/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+D+G+VPIF++LL+SPSDD+R Q+VWALGNIA +SP++RDLVLG  A
Sbjct: 143 NIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGA 202

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+ LL Q N    LSM R ATWTLSN C GKP+P+F+Q +  LPTL +L+HSNDE V+++
Sbjct: 203 LVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTD 262

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVC RLV+LL H S SVL  AL TVGNI  GD  QT 
Sbjct: 263 ACWALSYLSDG-TNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDIQTQ 321

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +I+  ALP L+ LL  N+K SIK  ACW ISNITAGNR QIQ VI+AG+I PLV LLQN
Sbjct: 322 VMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQN 381

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG H+QIK+L  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 382 AEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           K+GEA+K+     G VN YAQL++EA+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct: 442 KIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/355 (61%), Positives = 274/355 (77%), Gaps = 2/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+   +++ GAVPIF++LL+S S+D+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 145 NIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGA 204

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           + PLL+Q N +  LSM R ATWTLSN C GKP P F+Q +P LP L +LV S DE V+++
Sbjct: 205 MTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTD 264

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L D   ND+IQAVIEAGV PRL++LLGH S SVL  AL T+GNI  GD  QT 
Sbjct: 265 ACWALSYLSDNS-NDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQ 323

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +++  ALP LL LL +N+K SIK  ACW ISNITAGN +QIQAVIDAG+I  LV +LQ+
Sbjct: 324 MVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQS 383

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F +KKEAAW ISNAT GGTH+QIK++  +GCIKPLCDLL CPD ++VTVCL+ALENIL
Sbjct: 384 AEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENIL 443

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
            VGEAEKN     G+ N YAQ+++EA+GLEKIENLQ HDN +I++K+ KILET+W
Sbjct: 444 VVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  357 bits (915), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/356 (54%), Positives = 243/356 (68%), Gaps = 5/356 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K V++ GAVPIF++LL S  +D++ Q+VWALGNIA +S   RD VL  + 
Sbjct: 151 NIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSI 210

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLLT L     L+M R A W LSNLC GK P P F +V PCLP L++L+ S+D  +++
Sbjct: 211 LNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLA 270

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  N++IQAVI++GVC RLV+LL H    V + AL  VGNI  GD  QT
Sbjct: 271 DACWALSYLSDG-PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQT 329

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC ALP LL LL  + K SI+  ACW ISNITAGNR QIQAVIDA +   L+ +LQ
Sbjct: 330 QVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQ 388

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GGT EQI+YL   GCIKPLCDLL   D +IV V L  LENI
Sbjct: 389 KAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENI 448

Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E         VN Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 449 LRLGEQESKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  356 bits (914), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/356 (54%), Positives = 243/356 (68%), Gaps = 5/356 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K V++ GAVPIF++LL S  +D++ Q+VWALGNIA +S   RD VL  + 
Sbjct: 151 NIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSI 210

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLLT L     L+M R A W LSNLC GK P P F +V PCLP L++L+ S+D  +++
Sbjct: 211 LNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLA 270

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  N++IQAVI++GVC RLV+LL H    V + AL  VGNI  GD  QT
Sbjct: 271 DACWALSYLSDG-PNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQT 329

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC ALP LL LL  + K SI+  ACW ISNITAGNR QIQAVIDA +   L+ +LQ
Sbjct: 330 QVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQ 388

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GGT EQI+YL   GCIKPLCDLL   D +IV V L  LENI
Sbjct: 389 KAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENI 448

Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E         VN Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 449 LRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  355 bits (912), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/356 (54%), Positives = 243/356 (68%), Gaps = 5/356 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K V++ GAVPIF++LL S  +D++ Q+VWALGNIA +S   RD VL  + 
Sbjct: 151 NIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSI 210

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLLT L     L+M R A W LSNLC GK P P F +V PCLP L++L+ S+D  +++
Sbjct: 211 LNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLA 270

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  N++IQAVI++GVC RLV+LL H    V + AL  VGNI  GD  QT
Sbjct: 271 DACWALSYLSDG-PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQT 329

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC ALP LL LL  + K SI+  ACW ISNITAGNR QIQAVIDA +   L+ +LQ
Sbjct: 330 QVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQ 388

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GGT EQI+YL   GCIKPLCDLL   D +IV V L  LENI
Sbjct: 389 KAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENI 448

Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E         VN Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 449 LRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  355 bits (912), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/356 (54%), Positives = 243/356 (68%), Gaps = 5/356 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K V++ GAVPIF++LL S  +D++ Q+VWALGNIA +S   RD VL  + 
Sbjct: 151 NIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSI 210

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLLT L     L+M R A W LSNLC GK P P F +V PCLP L++L+ S+D  +++
Sbjct: 211 LNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLA 270

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  N++IQAVI++GVC RLV+LL H    V + AL  VGNI  GD  QT
Sbjct: 271 DACWALSYLSDG-PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQT 329

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC ALP LL LL  + K SI+  ACW ISNITAGNR QIQAVIDA +   L+ +LQ
Sbjct: 330 QVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQ 388

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GGT EQI+YL   GCIKPLCDLL   D +IV V L  LENI
Sbjct: 389 KAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENI 448

Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E         VN Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 449 LRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/356 (52%), Positives = 246/356 (69%), Gaps = 8/356 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  + V+++GA+ +FV LL+SP DD+R Q+VWALGNIA +S   RDLVL   A
Sbjct: 137 NIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLVLSHNA 196

Query: 61  LIPLLTQLNNHE--NLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVM 118
           L PLL+ L N     +SM R ATWTLSN C GKP+P F+ VR  LP LA+L++  DE V+
Sbjct: 197 LPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQDEEVL 256

Query: 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178
            +ACW LS L DG  N+ IQ VI+A VC ++V+LLGHP+ +V T AL T+GNI  GD +Q
Sbjct: 257 IDACWALSYLSDGS-NERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTGDDNQ 315

Query: 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238
           T  +++  AL +LL LL  + K +I+  ACW ISNITAG++ QIQ VIDA +I  LV LL
Sbjct: 316 TQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLL 374

Query: 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298
            NA F I+KEAAWAISNAT  GT +QI +L  +GC+KPLCDLL   DP+I+ V L+ +EN
Sbjct: 375 ANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIEN 434

Query: 299 ILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354
           IL  G+ E      +  VN Y +++E+A GL KI +LQ H N +  EK ++I+ TY
Sbjct: 435 ILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.966	0.699	0.701	1e-145
449464730	530	PREDICTED: importin subunit alpha-1-like	0.966	0.698	0.697	1e-145
224130302	529	predicted protein [Populus trichocarpa]	0.921	0.667	0.726	1e-144
356556046	531	PREDICTED: importin subunit alpha-1-like	0.960	0.693	0.698	1e-144
356564581	530	PREDICTED: importin subunit alpha-1-like	0.966	0.698	0.688	1e-143
356529274	531	PREDICTED: importin subunit alpha-1-like	0.966	0.696	0.693	1e-143
356535026	532	PREDICTED: importin subunit alpha-1-like	0.921	0.663	0.721	1e-143
356576835	532	PREDICTED: importin subunit alpha-1-like	0.921	0.663	0.721	1e-143
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.966	0.698	0.683	1e-143
255542844	531	importin alpha, putative [Ricinus commun	0.924	0.666	0.709	1e-142

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/379 (70%), Positives = 299/379 (78%), Gaps = 9/379 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL SPSDD+R Q+VWALGN+A +SPR RDLVLG  A
Sbjct: 142 NIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGA 201

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           LIPLL QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP L +LVHS+DE V+++
Sbjct: 202 LIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTD 261

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 262 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQ 320

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL  NHK SIK  ACW ISNITAGN+EQIQAVI+AG+I PLV+LLQ 
Sbjct: 321 SIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQT 380

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTHEQIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 381 AEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV- 359
           KVGEAEK T  + GDVN YAQL+++A+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct: 441 KVGEAEK-TLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEED 499

Query: 360 ------VGPQPGLLYAGNE 372
                  G QPG  + GN+
Sbjct: 500 ETLPSGDGSQPGFQFGGND 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/380 (69%), Positives = 299/380 (78%), Gaps = 10/380 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  K V+DHGAVPIFVKLLASPSDD+R Q+VWALGN+A +SP  RDLVL   A
Sbjct: 142 NIASGTSEHTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPTCRDLVLRHGA 201

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           LIPLL+QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP L +LVHSNDE V+++
Sbjct: 202 LIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTD 261

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVC RLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 262 ACWALSYLSDG-TNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQ 320

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
           +I+N GAL  LLG+   NHK SIK  ACW ISNITAGN+EQIQAVI+A LI PLVNLLQN
Sbjct: 321 WIVNDGALSCLLGIFTQNHKKSIKKEACWTISNITAGNKEQIQAVIEARLIPPLVNLLQN 380

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTHEQIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 381 AEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC---- 356
           KVGEAEKN  T+ GDVN YAQ++++A+GLEKIENLQ HDN+EI+EK+ KILETYW     
Sbjct: 441 KVGEAEKNLGTN-GDVNLYAQMIDDAEGLEKIENLQSHDNHEIYEKAVKILETYWLEEED 499

Query: 357 ----GRVVGPQPGLLYAGNE 372
                   G QPG  + GNE
Sbjct: 500 EALPATDGGAQPGFRFGGNE 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/355 (72%), Positives = 291/355 (81%), Gaps = 2/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL SPSDD+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 143 NIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGA 202

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           LIPLL QLN H  LSM R ATWTLSN C GKP+P+F++VRP LP L +LVHS DE V+++
Sbjct: 203 LIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPALERLVHSTDEEVLTD 262

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 263 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQ 321

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL  NHK SIK  ACW ISNITAGN+EQIQAVI+AGLIGPLVNLLQN
Sbjct: 322 CIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQN 381

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWA+SNAT GGTHEQIK+L  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 382 AEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGEAEKN     GDVN YAQ++++A+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct: 442 KVGEAEKNLGNS-GDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/381 (69%), Positives = 298/381 (78%), Gaps = 13/381 (3%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL+SPSDD+R Q+VWALGN+A +SPR RDLVL   A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGA 203

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           LIPLL QLN H  LSM R ATWTLSN C GKP+P F+QVR  LP L +LV SNDE V+++
Sbjct: 204 LIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTD 263

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQ 322

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL  NHK SIK  ACW ISNITAGNR+QIQAVI+AGLI PLVNLLQN
Sbjct: 323 TIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQN 382

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTHEQIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 442

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW----- 355
           KVGEAEK+   + GDVN YAQ+++EA+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct: 443 KVGEAEKSLG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDD 501

Query: 356 ----CGRVVGPQPGLLYAGNE 372
                G   G QPG  +  N+
Sbjct: 502 ETLPAGD--GAQPGFNFGNND 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/379 (68%), Positives = 298/379 (78%), Gaps = 9/379 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL+SPSDD+R Q+VWALGN+A +SPR RDLVL + A
Sbjct: 143 NIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 202

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+QVRP LP L +LV SNDE V+++
Sbjct: 203 LVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTD 262

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVC RLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 263 ACWALSYLSDG-TNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQ 321

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL +NHK SIK  ACW ISNITAGN+EQIQ VI+AGL+ PLVNLLQN
Sbjct: 322 CIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQN 381

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG HEQIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 382 AEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV- 359
           KVGEAEK+   + GDVN+YAQ++++A+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct: 442 KVGEAEKSLG-NTGDVNEYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEED 500

Query: 360 ------VGPQPGLLYAGNE 372
                  G QPG  +  NE
Sbjct: 501 ETLPSGDGAQPGFNFGNNE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/379 (69%), Positives = 296/379 (78%), Gaps = 9/379 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL+SPSDD+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGA 203

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           LIPLL QLN H  LSM R ATWTLSN C GKP+P F+QVR  LP L +LV SNDE V+++
Sbjct: 204 LIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTD 263

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQ 322

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL  NHK SIK  ACW ISNITAGNR+QIQAV++AGLI PLVNLLQN
Sbjct: 323 TIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQN 382

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTHEQIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 442

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW----- 355
           KVGEAEK+     GDVN YAQ+++EA+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct: 443 KVGEAEKSMGNS-GDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDD 501

Query: 356 --CGRVVGPQPGLLYAGNE 372
                  G QPG  +  N+
Sbjct: 502 ETLPTGDGAQPGFNFGNND 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/355 (72%), Positives = 292/355 (82%), Gaps = 2/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLLASPSDD+R Q+VWALGN+A +SPR RDLVL   A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGA 203

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP LA+L+HSNDE V+++
Sbjct: 204 LLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTD 263

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQ 322

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN  ALP LL LL +N+K SIK  ACW ISNITAGN++QIQAVI+A LI PLVNLLQN
Sbjct: 323 VIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQN 382

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+HEQIK+L  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENIL 442

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGEA+KN   + GDVN YAQ+++EA+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct: 443 KVGEADKNIG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/355 (72%), Positives = 292/355 (82%), Gaps = 2/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLLASPSDD+R Q+VWALGN+A +SPR RDLVL   A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGA 203

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP LA+L+HSNDE V+++
Sbjct: 204 LLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTD 263

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQ 322

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN  ALP LL LL +N+K SIK  ACW ISNITAGN++QIQAVI+A LI PLVNLLQN
Sbjct: 323 VIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQN 382

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+HEQIK+L  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENIL 442

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGEA+KN   + GDVN YAQ+++EA+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct: 443 KVGEADKNIG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/379 (68%), Positives = 297/379 (78%), Gaps = 9/379 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL+SPSDD+R Q+VWALGN+A +SPR RDLVL   A
Sbjct: 143 NIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGA 202

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+QVRP LP L +LV SNDE V+++
Sbjct: 203 LVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTD 262

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRL++LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 263 ACWALSYLSDG-TNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN GALP LL LL +NHK SIK  ACW ISNITAGN+EQIQ VI+AGL+ PLVNLLQ+
Sbjct: 322 CIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQS 381

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEA+WAISNAT GGTH+QIKYL  +GC+KPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 382 AEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENIL 441

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV- 359
           KVGEAEK+   + GDVN YAQ+++EA+GLEKIENLQ HDN EI+EK  KILETYW     
Sbjct: 442 KVGEAEKSLG-NTGDVNVYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYWLEEED 500

Query: 360 ------VGPQPGLLYAGNE 372
                  G QPG  +  NE
Sbjct: 501 ETLPSGNGAQPGFNFGNNE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/355 (70%), Positives = 293/355 (82%), Gaps = 1/355 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ + V+DHGAVPIFVKLLASPSDD+R Q+VWALGN+A +SP+ RDLVLG  A
Sbjct: 142 NIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLGNGA 201

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+QV+P LP LA+L+HSNDE V+++
Sbjct: 202 LLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPALARLIHSNDEEVLTD 261

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD  QT 
Sbjct: 262 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQ 320

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            IIN  ALP LL LL +N+K SIK  ACW ISNITAGN+EQIQAVI+A +IGPLV+LL+N
Sbjct: 321 CIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLEN 380

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GGTH+QIKYL  +GCIKPLCDLL+CPDP+IVTVCL+ LENIL
Sbjct: 381 AEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENIL 440

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGEA+KN   + G VN YAQ++++A+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct: 441 KVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEKAVKILETYW 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.966	0.695	0.625	7.7e-119
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.921	0.659	0.661	1.1e-117
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.971	0.691	0.599	8.4e-113
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.921	0.664	0.594	3.5e-107
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.921	0.654	0.573	1.4e-101
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.911	0.672	0.564	1.8e-96
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.924	0.670	0.540	1.7e-91
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.921	0.638	0.533	4e-90
UNIPROTKB|Q5ZJZ0	533	KPNA6 "Importin subunit alpha"	0.916	0.658	0.525	1.8e-87
UNIPROTKB|E1C4J0	539	KPNA5 "Importin subunit alpha"	0.916	0.651	0.522	4.7e-87

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 239/382 (62%), Positives = 281/382 (73%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T +  K V+DH AVPIFV+LLASPSDD+R Q+VWALGN+A +SPR RDLVLG  A
Sbjct:   142 NIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGA 201

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
             L+PLL QLN H  LSM R ATWTLSN C GKP+P FDQV+P LP L +L+HS+DE V+++
Sbjct:   202 LLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTD 261

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             ACW LS L DG  ND+IQ VI+AGV P+LV+LL H S SVL  AL TVGNI  GD  QT 
Sbjct:   262 ACWALSYLSDG-TNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQ 320

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
              +IN GALP L  LL  NHK SIK  ACW ISNITAGN++QIQ V++A LI PLV+LLQN
Sbjct:   321 CVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQN 380

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             A F IKKEAAWAISNAT GG+H+QIKYL  +GCIK           +I+TVCL+ LENIL
Sbjct:   381 AEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENIL 440

Query:   301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR-- 358
             KVGEAEKN     GD+N YAQL+++A+GLEKIENLQ HDN EI+EK+ KILETYW     
Sbjct:   441 KVGEAEKNLG-HTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEED 499

Query:   359 --------VVGPQPGLLYAGNE 372
                     V G Q G  + GN+
Sbjct:   500 DETQQPPGVDGSQAGFQFGGNQ 521

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 235/355 (66%), Positives = 276/355 (77%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T E+ K V++HGAVPIFV+LLAS SDD+R Q+VWALGN+A +SPR RDLVLG+ A
Sbjct:   147 NIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGA 206

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
             LIPLL+QLN H  LSM R ATWTLSN C GKP+P FDQVRP LP L +L+HS DE V+++
Sbjct:   207 LIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDEEVLTD 266

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             ACW LS L DG  ND+IQ+VIEAGV PRLV+LL H S SVL  AL ++GNI  GD  QT 
Sbjct:   267 ACWALSYLSDG-TNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDDLQTQ 325

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
              +I+ GAL  LL LL  NHK SIK  ACW ISNITAGNR+QIQAV +AGLI PLVNLLQN
Sbjct:   326 CVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPLVNLLQN 385

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             A F IKKEAAWAISNAT GG+ +QIKY+  +G +K           +I+TVCL+ LENIL
Sbjct:   386 AEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENIL 445

Query:   301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
             KVGEAEK T  + GDVN YAQL+++A+GLEKIENLQ HDN EI+EK+ KILETYW
Sbjct:   446 KVGEAEKVTG-NTGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 226/377 (59%), Positives = 274/377 (72%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             ++AS T +  + V++ GAVPIFVKLL S SDD+R Q+VWALGN+A +SP  R+LVL   A
Sbjct:   149 NVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGA 208

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
             L PLL QLN +  LSM R ATWTLSN C GKP   F+QV+P LP L QL++ NDE V+++
Sbjct:   209 LEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTD 268

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             ACW LS L DG  ND+IQAVIEAGVCPRLV+LLGH S +VL  AL TVGNI  GD SQT 
Sbjct:   269 ACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQ 327

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
             +II  G LP+L  LL  NHK SIK  ACW ISNITAGN+ QI+AV+ AG+I PLV+LLQN
Sbjct:   328 FIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQN 387

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             A F IKKEAAWAISNAT GG+HEQI+YL  +GCIK           +IVTVCL+ LENIL
Sbjct:   388 AEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENIL 447

Query:   301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV 360
             KVGEA+K    + G VN YAQ++EE+ GL+K+ENLQ HDN EI+EK+ KILE YW     
Sbjct:   448 KVGEADKEMGLNSG-VNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILERYWAEE-- 504

Query:   361 GPQPGLLYAGNEENEEE 377
               +  +L  G  +N ++
Sbjct:   505 -EEEQILQDGGNDNSQQ 520

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 211/355 (59%), Positives = 265/355 (74%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T E+   +++ GAVPIF++LL+S S+D+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct:   145 NIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGA 204

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
             + PLL+Q N +  LSM R ATWTLSN C GKP P F+Q +P LP L +LV S DE V+++
Sbjct:   205 MTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTD 264

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             ACW LS L D   ND+IQAVIEAGV PRL++LLGH S SVL  AL T+GNI  GD  QT 
Sbjct:   265 ACWALSYLSDNS-NDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQ 323

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
              +++  ALP LL LL +N+K SIK  ACW ISNITAGN +QIQAVIDAG+I  LV +LQ+
Sbjct:   324 MVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQS 383

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             A F +KKEAAW ISNAT GGTH+QIK++  +GCIK           ++VTVCL+ALENIL
Sbjct:   384 AEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENIL 443

Query:   301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
              VGEAEKN     G+ N YAQ+++EA+GLEKIENLQ HDN +I++K+ KILET+W
Sbjct:   444 VVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 204/356 (57%), Positives = 257/356 (72%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T E+ + ++D GAVP+FVKLL+S S+++R Q+VWALGN+A +SP+ RD VL   A
Sbjct:   146 NIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHVLSCEA 205

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ-VRPCLPTLAQLVHSNDEHVMS 119
             ++ LL Q + H  LSM R ATWTLSN C GKP+P F+Q  +  LP L +L+HS DE V++
Sbjct:   206 MMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERLLHSTDEEVLT 265

Query:   120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
             +A W LS L DG  N++IQ VI+AGV PRLV+LL HPS SVL  AL T+GNI  GD  QT
Sbjct:   266 DASWALSYLSDG-TNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGDDIQT 324

Query:   180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
               +I+  ALP LL LL + +K SIK  ACW ISNITAGN  QIQ V  AG+I PL+NLL+
Sbjct:   325 QAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLINLLE 384

Query:   240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
                F IKKEA WAISNAT GG H+QIK+L  +GCI+           ++VTV L+ LENI
Sbjct:   385 IGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENI 444

Query:   300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
             LKVGEAEKN   + G+ N YAQ++E+A GL+KIENLQ HDN EI+EK+ KILE+YW
Sbjct:   445 LKVGEAEKNLG-NTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 200/354 (56%), Positives = 241/354 (68%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS   E  K V+DHG VP+FV+LLASP DD+R Q++W LGN+A +S + RD VL   A
Sbjct:   140 NIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFVLNSGA 199

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
              IPLL QLNNH  LS+ R ATWTLSN   GKP P FD V+  LP L +LV+S+DE V+ +
Sbjct:   200 FIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDEQVLID 259

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             ACW LS L D   N+ IQ+VIEAGV PRLV+LL H S  VL  AL  +GNI  G+  QT 
Sbjct:   260 ACWALSNLSDAS-NENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNSQQTH 318

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
              +INCG LP L  LL  NH   I+  ACW ISNITAG  EQIQ+VIDA LI  LVNL Q+
Sbjct:   319 CVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVNLAQH 378

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             A F IKKEA WAISNA+ GG+  QIKYL  + CIK           +I+ V L  LE IL
Sbjct:   379 AEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMIL 438

Query:   301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354
               GE +KN    + DVN Y+Q++E+A+GLEKIENLQ H N EI+EK+ KIL+TY
Sbjct:   439 IAGEVDKN----LRDVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 195/361 (54%), Positives = 247/361 (68%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T E+ + V+DHGAV I V+LL SP D +R Q VWALGNI+ +SPR RD+VLG AA
Sbjct:   130 NIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDIVLGHAA 189

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
             L  LL QLN+   LSM   A WTLSNLC GKP+P FDQV   LP LAQL+  +D+ +++ 
Sbjct:   190 LPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDDKELLAY 249

Query:   121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
              CW L  L DG  N++IQAVIEA VC RL+ L  H S SV+T AL T+GNI  G+ SQT 
Sbjct:   250 TCWALVYLSDGS-NEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGNDSQTQ 308

Query:   181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
             +II+  ALP L+ LL  ++  +I+  ACW +SNITAG + QIQAV DA +   LVNLLQN
Sbjct:   309 HIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALVNLLQN 368

Query:   241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
             +   +KKEAAWAI NA  GG+++QI +L ++ CIK           Q+V VCL+AL+ IL
Sbjct:   369 SEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEALKKIL 428

Query:   301 KVGE------AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354
             KVGE      AE        +VN +AQL+EEA+GLEKIE LQ H+N +I+E + KILETY
Sbjct:   429 KVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVKILETY 488

Query:   355 W 355
             W
Sbjct:   489 W 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 191/358 (53%), Positives = 243/358 (67%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS + +  + V++ GAVPIFV+LL+SP  D+R Q+VWALGNIA +SP+ RD VL   A
Sbjct:   151 NIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFVLNAGA 210

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
             L PLLT +N+   +SM R ATWTLSN C GK P+P ++ + P LP LA+L++  D+ V+ 
Sbjct:   211 LRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLDDEVLI 270

Query:   120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
             +ACW +S L DG  N++IQAVIEAG+  RLV+LL H S SV T AL +VGNI  GD  QT
Sbjct:   271 DACWAISYLSDG-PNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQT 329

Query:   180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
               IINCGALP LL LL  + K  I+  ACW ISNITAGN  QIQ+VIDAG+I PLV+LL 
Sbjct:   330 QVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLVHLLA 388

Query:   240 NAVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
             N  F  +KEA WAISNAT GG    +QI+YL  +GCIK           +I+ V L  LE
Sbjct:   389 NGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVALDGLE 448

Query:   298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
             NILKVGE +K        VN+YA  +EEA G+EKI + Q + N EI+ K+  I+E Y+
Sbjct:   449 NILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|Q5ZJZ0 KPNA6 "Importin subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 187/356 (52%), Positives = 239/356 (67%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T +  K V++ GAVPIF++LL S  +D++ Q+VWALGNIA +S   RD VL  A 
Sbjct:   149 NIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCAI 208

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
             L PLL  L     L+M R A W LSNLC GK P P FD+V PCLP L++L+ ++D  +++
Sbjct:   209 LPPLLMLLTKSTRLTMTRNAVWALSNLCRGKSPPPEFDKVSPCLPVLSRLLFNSDSDLLA 268

Query:   120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
             +ACW LS L DG  N++IQAVI++GVC RLV+LL H    V + AL  VGNI  GD  QT
Sbjct:   269 DACWALSYLSDG-PNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQT 327

Query:   180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
               I+NC ALP LL LL  + K SI+  ACW ISNITAGNR QIQAVIDA +   L+ +LQ
Sbjct:   328 QVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQ 386

Query:   240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
              A F  +KEAAWAI+NAT GGT EQI+YL   GCIK           +IV V L  LENI
Sbjct:   387 KAEFRTRKEAAWAITNATSGGTPEQIRYLVNLGCIKPLCDLLTVMDSKIVQVALNGLENI 446

Query:   300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
             L++GE E N  +  G +N Y  ++EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct:   447 LRLGEQEAN-QSGTG-INPYCSMIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 500

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E1C4J0 KPNA5 "Importin subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 186/356 (52%), Positives = 238/356 (66%)

Query:     1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
             +IAS T    K V++ GAVPIF+KLL+S  +D++ Q+VWALGNIA ++   RD VL    
Sbjct:   154 NIASGTFLHTKVVIETGAVPIFIKLLSSEHEDVQEQAVWALGNIAGDNAECRDFVLNCGI 213

Query:    61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
             L PLL  L N   L+  R A W LSNLC GK P P F +V PCL  L++L+ S+D  V++
Sbjct:   214 LPPLLELLTNSNRLTTTRNAVWALSNLCRGKNPPPDFSKVAPCLNVLSRLLFSSDPDVLA 273

Query:   120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
             +ACW LS L DG  ND+IQAVI++GVC RLV+LL H    V++ AL  VGNI  GD  QT
Sbjct:   274 DACWALSYLSDG-PNDKIQAVIDSGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 332

Query:   180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
               I+NC ALP LL LL  + K SI+  ACW +SNITAGNR QIQAVIDA +   L+ +LQ
Sbjct:   333 QVILNCSALPCLLHLL-SSPKESIRKEACWTVSNITAGNRAQIQAVIDANIFPILIEILQ 391

Query:   240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
              A F  +KEAAWAI+NAT GGT EQI+YL   GC K           +IV V L  LENI
Sbjct:   392 KAEFRTRKEAAWAITNATSGGTPEQIRYLVALGCTKPLCDLLTVMDSKIVQVALNGLENI 451

Query:   300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
             L++GE E   +  +G +N Y  L+EEA GL+KIE LQRH+N EI++K+ +++E Y+
Sbjct:   452 LRLGEQESKQN-GMG-INPYCALIEEAYGLDKIEFLQRHENQEIYQKAFELIEHYF 505

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5449	0.9164	0.6548	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5449	0.9164	0.6548	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5111	0.9138	0.6457	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.6518	0.9660	0.6954	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5013	0.9164	0.6512	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5252	0.9086	0.6744	yes	no
O60684	IMA7_HUMAN	No assigned EC number	0.5449	0.9164	0.6548	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5449	0.9164	0.6548	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.6929	0.9190	0.6692	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033097001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (529 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-128
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-25
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-17
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-15
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.001
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  378 bits (973), Expect = e-128
 Identities = 185/359 (51%), Positives = 240/359 (66%), Gaps = 8/359 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T +  K VVD GAVP+F++LL+S  DD+R Q+VWALGNIA +S   RD VL   A
Sbjct: 141 NIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGA 200

Query: 61  LIPLLTQLN-NHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVM 118
           L PLL  L  +  ++SM R ATWTLSNLC GK P P +  +   LP LA+L++S D  V+
Sbjct: 201 LEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVL 260

Query: 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178
            +ACW +S L DG  N++IQAV++ G+  RLV+LL H S  + T AL +VGNI  G   Q
Sbjct: 261 VDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ 319

Query: 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238
           T  IINCGAL     LL  + K +I+  ACW ISNITAGN EQIQAVIDA LI PL++LL
Sbjct: 320 TQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378

Query: 239 QNAVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
            +A + IKKEA WAISNAT GG +  + I+YL  +G IKPLCDLL   D +I+ V L A+
Sbjct: 379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAI 438

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           ENILKVGE ++       ++N YA  VE+A G++ I  LQ   N  I++K+  I+E ++
Sbjct: 439 ENILKVGEQDRLRYGK--NINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 98.2 bits (245), Expect = 5e-25
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
            LP L  L+ S+DE+V   A W LS L  G  ND IQAV+EAG  P LV+LL    + V+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216
             AL  + N+A G     L ++  G +P L+ LL D+    I+  A   +SN+ +
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +I  G LP L+ LL  +   +++  A W +SN++AGN + IQAV++AG +  LV LL+
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
           +    + K A WA+ N   G   +    +   G +  L +LL   +  I      AL N+
Sbjct: 60  SEDEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL 282
           +AVI AG +  LV+LL ++   +++EAAWA+SN + G  ++ I+ +   G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 283 CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYE 342
             D ++V   L AL N+    E  K              +V EA G+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-------------LIVLEAGGVPKLVNLLDSSNED 106

Query: 343 IHEKSAKILETYW 355
           I + +   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 12  AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
           AV+  G +P  V LL+S  ++++ ++ WAL N++A +      V+ EA  +P L QL   
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKS 60

Query: 72  ENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNACWGLSLLC 129
           E+  + + A W L NL  G        +    +P L  L+ S++E +  NA   LS L 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++++   ++ +AVV+ G +P  V+LL S  +++   ++WAL N+AA     + +VL EA 
Sbjct: 33  NLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL-EAG 91

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC 88
            +P L  L +  N  +++ AT  LSNL 
Sbjct: 92  GVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 76.1 bits (187), Expect = 5e-15
 Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 47/279 (16%)

Query: 94  PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL 153
           P+  Q    LP L Q + S+D      A +    L     +  IQ VI+AGV PR V+ +
Sbjct: 64  PMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM 123

Query: 154 GHPSQSVLT-QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212
               + +L  +A   + NIA G   QT  +++ GA+P  + LL       ++  A W + 
Sbjct: 124 DEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED-DVREQAVWALG 182

Query: 213 NITAGNREQIQ-AVIDAGLIGPLVNLLQNAVFYIK--KEAAWAISNATFG---------- 259
           NI AG+ E  +  V+  G + PL+ LL ++  +I   + A W +SN   G          
Sbjct: 183 NI-AGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241

Query: 260 -------------------------------GTHEQIKYLEREGCIKPLCDLLLCPDPQI 288
                                          G +E+I+ +   G    L +LL     +I
Sbjct: 242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI 301

Query: 289 VTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAK 327
            T  L+++ NI+   + +     + G +  +  L+   K
Sbjct: 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK 340

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.5 bits (122), Expect = 9e-09
 Identities = 19/39 (48%), Positives = 32/39 (82%)

Query: 8  EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA 46
          E+K+AV++ GAVP  V+LL+SP ++++ ++ WAL N+AA
Sbjct: 3  ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.5 bits (122), Expect = 9e-09
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255
           + E  QAVI+AG + PLV LL +    +++EAAWA+SN
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 8  EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA 46
          E+K+AVVD G +P  V+LL S  +++  ++ WAL N+++
Sbjct: 3  ENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173
            QAV++AG  P LV+LL    + V+ +A   + N++ 
Sbjct: 5   KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.1 bits (108), Expect = 6e-07
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR 173
            +  QAVIEAG  P LV+LL  P + V  +A   + N+A 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF 258
           + E  QAV+DAG +  LV LL++    + KEAAWA+SN + 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 261 THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
             E  + +   G +  L +LL   D ++V     AL N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 261 THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
           + E  + +   G + PL  LL  PD ++      AL N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 33 IRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL 87
          +R  +  ALG +A   P    L      L+P L  L   ++  ++  A W L  +
Sbjct: 3  VREAAALALGALAGGGPE--LLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA 46
           +A+   ++K  V++ G VP  V LL S ++DI+  +  AL N+A+
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216
               +I  GA+P L+ LL  +    ++  A W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 11/237 (4%)

Query: 8   EDKKAVVDHG-AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLT 66
           E +KA+  H  A+P+ V LL S +   ++ +   LG +  E      ++LG    IP L 
Sbjct: 48  EARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG--GCIPPLL 105

Query: 67  QLNNHENLSMKRIATWTLS--NLCGGKP---RPIF--DQVRPCLPTLAQLVHSNDEHVMS 119
            L    +   ++ A   +   +  G        IF  + V P L    Q  +  D+ V  
Sbjct: 106 SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEG 165

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
                L  LC G  +    A +EAG    LVKLL   +      A   +  +     S  
Sbjct: 166 LLTGALRNLC-GSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSI 224

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVN 236
             +++ GA+  LL LL   ++ S++  A   +  +++ ++E  QA+ DAG I  L+N
Sbjct: 225 SKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281

Length = 2102

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLL 128
            ++  A   L  L GG P  +   V   LP L  L+  +D+ V   A W L  +
Sbjct: 2   EVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
          A+P  ++LL  P  ++R  +  ALG +               AL  LL  L + ++  ++
Sbjct: 32 ALPALLELLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELLQDDDDAVVR 80

Query: 78 RIATWTLS 85
            A   L+
Sbjct: 81 AAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216
           D      +++ G LP L+ LL       +   A W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 48 SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88
          SP  +  V+ EA  +P L QL +  +  ++  A W LSNL 
Sbjct: 1  SPENKQAVI-EAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 3   ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAE-------------SP 49
           A   L+D    +   A    +KLL      +R+ +  ALG + +E              P
Sbjct: 29  ALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDP 88

Query: 50  RFRDL---VLG----EAALIPLLTQLNNHENLSMKRIATWTLSNL 87
           R RD     LG      A+ PL+  L N EN  ++  A   L  L
Sbjct: 89  RVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKL 133

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.9
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.85
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.76
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.72
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.71
PRK09687	280	putative lyase; Provisional	99.7
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.67
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.65
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
PRK09687	280	putative lyase; Provisional	99.61
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.59
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.59
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.57
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.57
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.56
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.49
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.47
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.45
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.38
PTZ00429	746	beta-adaptin; Provisional	99.38
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.33
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.31
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.3
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.28
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.27
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.27
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.22
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.21
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.19
COG5369	743	Uncharacterized conserved protein [Function unknow	99.17
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.15
PTZ00429	746	beta-adaptin; Provisional	99.15
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.1
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.05
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.04
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.02
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.98
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.93
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.9
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.87
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.86
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.84
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.81
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.78
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.72
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.71
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.7
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.68
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.67
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.66
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.61
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.61
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.6
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.53
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.53
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.52
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.5
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.48
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.48
TIGR02270	410	conserved hypothetical protein. Members are found	98.48
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.45
TIGR02270	410	conserved hypothetical protein. Members are found	98.44
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.44
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.4
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.39
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.39
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.38
PF05536	543	Neurochondrin: Neurochondrin	98.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.37
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.36
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.34
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.33
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.33
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.31
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.28
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.26
COG5369	743	Uncharacterized conserved protein [Function unknow	98.26
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.24
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.23
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.23
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.2
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.18
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.15
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.15
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.14
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.13
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.12
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.1
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.09
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.09
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	98.09
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.08
KOG0567	289	consensus HEAT repeat-containing protein [General	98.08
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.08
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.05
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.03
PF05536	543	Neurochondrin: Neurochondrin	97.97
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.97
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.91
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.87
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.87
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.84
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.81
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.79
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.74
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.74
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.7
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.7
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.65
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.64
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.62
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.62
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.62
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.58
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.56
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.55
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.52
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.51
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.5
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.47
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.45
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.43
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.43
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.4
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.4
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.4
KOG2956	516	consensus CLIP-associating protein [General functi	97.4
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.39
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.39
KOG3036	293	consensus Protein involved in cell differentiation	97.38
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.38
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.33
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.32
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.29
KOG2025	892	consensus Chromosome condensation complex Condensi	97.29
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.28
PF05004	309	IFRD: Interferon-related developmental regulator (	97.28
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.24
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.23
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.22
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.22
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.22
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.2
PF05004	309	IFRD: Interferon-related developmental regulator (	97.2
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.17
KOG3036	293	consensus Protein involved in cell differentiation	97.15
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.12
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	97.11
KOG0567	289	consensus HEAT repeat-containing protein [General	97.09
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.06
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.05
KOG1243	690	consensus Protein kinase [General function predict	97.03
PF07814	361	WAPL: Wings apart-like protein regulation of heter	97.03
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.03
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.01
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.95
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.94
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.91
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.86
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.86
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.84
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.81
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.78
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.74
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.74
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.74
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	96.73
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.7
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.67
KOG2956	516	consensus CLIP-associating protein [General functi	96.62
KOG2025	892	consensus Chromosome condensation complex Condensi	96.62
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.56
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.56
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.52
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.49
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.34
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.32
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.32
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.26
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.19
KOG1243	690	consensus Protein kinase [General function predict	96.17
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	96.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.07
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.02
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.99
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.98
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.92
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.69
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.56
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.5
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.44
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.42
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.37
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.26
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.26
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.19
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.12
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.06
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.98
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.88
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.82
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.82
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	94.79
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.76
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.68
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.68
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.64
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.62
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.59
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.59
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.56
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.2
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.07
PRK14707	2710	hypothetical protein; Provisional	93.92
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.79
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.65
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.62
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.48
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.43
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.4
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.22
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.16
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.09
PRK14707	2710	hypothetical protein; Provisional	93.07
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.0
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.97
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.85
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.75
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.65
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.61
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.55
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.44
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.43
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.31
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.18
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	91.96
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.89
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.27
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	91.07
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.76
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.66
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.29
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.18
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.53
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.4
COG5656	970	SXM1 Importin, protein involved in nuclear import	89.25
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.19
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	89.05
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	88.95
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	88.85
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.75
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	88.46
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	88.23
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	87.98
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	87.81
KOG0413	1529	consensus Uncharacterized conserved protein relate	87.43
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	87.37
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	87.13
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	86.92
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.69
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.67
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	86.21
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	86.01
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	85.91
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.89
KOG2199	462	consensus Signal transducing adaptor protein STAM/	85.79
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	85.42
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	85.38
KOG0413	1529	consensus Uncharacterized conserved protein relate	84.91
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	84.86
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	84.81
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	83.56
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	83.0
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.84
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	82.83
KOG2073	838	consensus SAP family cell cycle dependent phosphat	82.73
PF09758	149	FPL: Uncharacterised conserved protein; InterPro:	82.73
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.42
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.13
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	82.1
KOG0301	745	consensus Phospholipase A2-activating protein (con	82.0
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.95
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	81.92
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	81.77
PF11229	589	DUF3028: Protein of unknown function (DUF3028); In	81.7
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	81.67
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	81.46
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	81.31

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-57  Score=394.39  Aligned_cols=359  Identities=62%  Similarity=0.917  Sum_probs=340.4

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+|+++++..+.+++.|++|.|++++.+++.+++++|+|+|+|++.+++.+|+.++..|++++|+.++..+....+.+++
T Consensus       136 nIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~  215 (514)
T KOG0166|consen  136 NIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA  215 (514)
T ss_pred             HHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999544445789999


Q ss_pred             HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142           81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS  159 (383)
Q Consensus        81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~  159 (383)
                      +|+|+|+|++. |.+....+..++|.|..++.+.|+++..+++|++.+|+.+ +++.++.+++.|++|.|+++|.++++.
T Consensus       216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~~~~  294 (514)
T KOG0166|consen  216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHSSPK  294 (514)
T ss_pred             HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCCCcc
Confidence            99999999998 8888889999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ++.+|+++++|++.+++...+.+++.|+++.+..++...+...++++|+|+++|+++++.+.++.+++.|++|.|+.+++
T Consensus       295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~  374 (514)
T KOG0166|consen  295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ  374 (514)
T ss_pred             cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence            99999999999999999999999999999999999995537779999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142          240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY  319 (383)
Q Consensus       240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  319 (383)
                      +.+.++|++|+|+|+|++..++++++.++++.|++++|+++|...|.++...++.++.+++..++.....    ++ +.+
T Consensus       375 ~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~  449 (514)
T KOG0166|consen  375 TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPL  449 (514)
T ss_pred             ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999877642    11 789


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCcc
Q 037142          320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPG  365 (383)
Q Consensus       320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  365 (383)
                      ..+++++||+++++.|+.|++++|+++|..+++.||.+++++....
T Consensus       450 ~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~  495 (514)
T KOG0166|consen  450 AIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQ  495 (514)
T ss_pred             HHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccccccc
Confidence            9999999999999999999999999999999999999987665544

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.1e-56  Score=364.08  Aligned_cols=356  Identities=52%  Similarity=0.794  Sum_probs=336.1

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRI   79 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~   79 (383)
                      |++|++..+.+.+++.|++|.|+++|.++..++++++.|+|+|++.+++.+|+.+++.|++++++.++.++. +..+.++
T Consensus       141 NiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn  220 (526)
T COG5064         141 NIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN  220 (526)
T ss_pred             hhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999996443 5689999


Q ss_pred             HHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142           80 ATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ  158 (383)
Q Consensus        80 a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~  158 (383)
                      +.|+|+|+|+.. |.+....++..+|.|.+++.+.|+++...|+|++.+++.+ +.+.++.+.+.|+.+.|+++|.+++.
T Consensus       221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~sa  299 (526)
T COG5064         221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHESA  299 (526)
T ss_pred             hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCccc
Confidence            999999999988 7888888999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      .++.++++.++|++.+++...+.+++.|+++.+..+|+++ .+.+|+++||+++|+++++.+.++.+++.+++|.|+.+|
T Consensus       300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll  378 (526)
T COG5064         300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL  378 (526)
T ss_pred             cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence            9999999999999999999999999999999999999999 889999999999999999999999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142          239 QNAVFYIKKEAAWAISNATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDV  316 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~  316 (383)
                      ...+..+|++|||++.|.++++  .++.++++++.|++++|+++|...+..+.+.++.++.|++..++.+...+.  ...
T Consensus       379 s~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~ni  456 (526)
T COG5064         379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNI  456 (526)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCc
Confidence            9999999999999999999876  578999999999999999999999999999999999999999887654322  245


Q ss_pred             cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          317 NQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       317 ~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      +.+..+++++||++.+.+++++.+..|+.+|..+++.||++++.
T Consensus       457 n~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         457 NIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             cHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence            67899999999999999999999999999999999999988763

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-45  Score=318.33  Aligned_cols=338  Identities=28%  Similarity=0.401  Sum_probs=306.9

Q ss_pred             HHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            8 EDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         8 ~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      .....++..|++|.|+++|.. .++.++..|+|+|.|+++++++..+.+++.|.++.+++++ .+++..++++|+|+|+|
T Consensus       100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgN  178 (514)
T KOG0166|consen  100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL-SSPSADVREQAVWALGN  178 (514)
T ss_pred             CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh-cCCcHHHHHHHHHHHhc
Confidence            456777888999999999985 6799999999999999999999999999999999999999 79999999999999999


Q ss_pred             hcCCCCCC-ChhhhhchhHHHHHhhccCCH-HHHHHHHHHHHHhccCC-CchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142           87 LCGGKPRP-IFDQVRPCLPTLAQLVHSNDE-HVMSNACWGLSLLCDGG-KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ  163 (383)
Q Consensus        87 l~~~~~~~-~~~~~~~~i~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~  163 (383)
                      ++.+++.. +.....|+++.|+.++..++. ...+++.|+|.|+|+++ +++....+  ..++|.|..++.+.|+++...
T Consensus       179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~D  256 (514)
T KOG0166|consen  179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTD  256 (514)
T ss_pred             cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHH
Confidence            99999554 566669999999999997775 89999999999999994 22333333  247999999999999999999


Q ss_pred             HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCc
Q 037142          164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAV  242 (383)
Q Consensus       164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~  242 (383)
                      ++|++++|+.+.++.++.+++.|+++.|+.+|.+. +..++..|+++++|++.+++...+.+++.|++|.|..++. ++.
T Consensus       257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~  335 (514)
T KOG0166|consen  257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK  335 (514)
T ss_pred             HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence            99999999999999999999999999999999999 9999999999999999999999999999999999999998 567


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      ..+|++|||+|+|++.+ +.++++.+++.|++|.|+.+++..+.++++.|+|++.|++..+..+            -..+
T Consensus       336 ~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~------------qi~y  402 (514)
T KOG0166|consen  336 ESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE------------QIKY  402 (514)
T ss_pred             hhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH------------HHHH
Confidence            77999999999999996 7899999999999999999999999999999999999999866644            4667


Q ss_pred             HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 037142          323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGP  362 (383)
Q Consensus       323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  362 (383)
                      +.+.|.++.+.+++..++.++...+++.+++++..++...
T Consensus       403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~  442 (514)
T KOG0166|consen  403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK  442 (514)
T ss_pred             HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999999999999887776444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.7e-45  Score=297.36  Aligned_cols=341  Identities=25%  Similarity=0.347  Sum_probs=308.1

Q ss_pred             CChHHHHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHH
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLA-SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWT   83 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~   83 (383)
                      .+......++++|++|.|++++. .+..-.+..|+|+|+|++++.....+.+++.|.+|.++++| .+++.+++++++|+
T Consensus       102 E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWA  180 (526)
T COG5064         102 ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWA  180 (526)
T ss_pred             ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHH-cCchHHHHHHHHHH
Confidence            34456778999999999999994 57888999999999999999989999999999999999999 78899999999999


Q ss_pred             HHhhcCCCCC-CChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChh
Q 037142           84 LSNLCGGKPR-PIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQS  159 (383)
Q Consensus        84 L~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~  159 (383)
                      |+|++.+++. ++.....|+++.++.++.++.  ..+.+++.|+|.|+|+++++ +.-..+..  .+|.|.+++.+.|++
T Consensus       181 LGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys~D~e  258 (526)
T COG5064         181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPE  258 (526)
T ss_pred             hccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHH
Confidence            9999999954 467777999999999998764  58999999999999998533 33333433  689999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      +...|+|++.+++.+..+.++.+++.|+.+.|+.+|+++ +..++..+++.++|++.+++...+.+++.|+++.+-.+|+
T Consensus       259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs  337 (526)
T COG5064         259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS  337 (526)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142          240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY  319 (383)
Q Consensus       240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  319 (383)
                      ++...+|++|||+|+|++.. +.++++.+++.+++|+|+.++..-+..+++.|||++.|....+..          .+..
T Consensus       338 ~~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~----------~PD~  406 (526)
T COG5064         338 SPKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN----------RPDI  406 (526)
T ss_pred             ChhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC----------CchH
Confidence            99999999999999999987 579999999999999999999999999999999999999876553          3457


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+++.+.|++..|+++++-.+..|.+.+++.+++....++-
T Consensus       407 iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~  447 (526)
T COG5064         407 IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ  447 (526)
T ss_pred             HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence            88899999999999999999999999999999988877763

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=302.32  Aligned_cols=378  Identities=21%  Similarity=0.208  Sum_probs=307.5

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |++..++.....+++.|++|.|+++|+++++.++..|+++|.+++...++.+..+++.|+++.|+++|.++.+..+++.|
T Consensus       173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A  252 (2102)
T PLN03200        173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA  252 (2102)
T ss_pred             HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence            45665555667789999999999999999999999999999999988788999999999999999999555677999999


Q ss_pred             HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCC---------HHHHHHHHHHHHHhccCCCchHHH------------
Q 037142           81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSND---------EHVMSNACWGLSLLCDGGKNDEIQ------------  138 (383)
Q Consensus        81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~---------~~~~~~~~~~l~~l~~~~~~~~~~------------  138 (383)
                      +|+|.||+.++ ..+......|++|.|++++..++         ..+++++.|+|.|+|.+ ....+.            
T Consensus       253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg-~~~ll~~L~~ll~s~rd~  331 (2102)
T PLN03200        253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG-MSALILYLGELSESPRSP  331 (2102)
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-chhhHHHHHHhhcccchH
Confidence            99999999986 34455556999999999997544         45689999999999875 111000            


Q ss_pred             -------------------------------------------------------------------HHHHhCcHHHHHH
Q 037142          139 -------------------------------------------------------------------AVIEAGVCPRLVK  151 (383)
Q Consensus       139 -------------------------------------------------------------------~~~~~~~i~~l~~  151 (383)
                                                                                         .+.+.+.++.|+.
T Consensus       332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~  411 (2102)
T PLN03200        332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG  411 (2102)
T ss_pred             HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence                                                                               0001122334444


Q ss_pred             hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                      +|...+.+++..++++|++++.++++..+.+.+.|+++.|+.+|.++ ++..++.++++++|++.++++.+..+++.|++
T Consensus       412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI  490 (2102)
T PLN03200        412 LITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGI  490 (2102)
T ss_pred             hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            55555677888999999999988888888899999999999999998 99999999999999999998999999999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCc
Q 037142          232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTD  310 (383)
Q Consensus       232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~  310 (383)
                      |.|+++|.+++.+++++|+|+|+|++.+  .++++.++ +.|++++|+++|++++++++..++++|.+++..++..+...
T Consensus       491 P~LV~LL~s~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~  568 (2102)
T PLN03200        491 PPLVQLLETGSQKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ  568 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence            9999999999999999999999999986  35555555 68999999999999999999999999999987554332110


Q ss_pred             C-----CC------------------Cccc-HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC------
Q 037142          311 T-----DI------------------GDVN-QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV------  360 (383)
Q Consensus       311 ~-----~~------------------~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~------  360 (383)
                      .     ..                  ...+ ...+.....|+++.|.+|++++++++++.|..+|.+||.....      
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv  648 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA  648 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            0     00                  0000 0111122468999999999999999999999999999986643      


Q ss_pred             -----CCCcccccccccccchhhhccC
Q 037142          361 -----GPQPGLLYAGNEENEEEDALGV  382 (383)
Q Consensus       361 -----~~~~~~~~~~~~~~~~~~~~~~  382 (383)
                           .|+..+++++++..+.++||++
T Consensus       649 ~agaIpPLV~LLss~~~~v~keAA~AL  675 (2102)
T PLN03200        649 TDEIINPCIKLLTNNTEAVATQSARAL  675 (2102)
T ss_pred             HcCCHHHHHHHHhcCChHHHHHHHHHH
Confidence                 6888999999999999999985

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.1e-34  Score=284.08  Aligned_cols=337  Identities=18%  Similarity=0.191  Sum_probs=298.9

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL   84 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L   84 (383)
                      +++..++.+.+.|+++.|+.+|...+.++|.+++|+|.+++.++.+.++.+.+.|+++.|+++| .+++...++.++|++
T Consensus       392 gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L  470 (2102)
T PLN03200        392 GNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALL  470 (2102)
T ss_pred             CChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            5677788888999999999999999999999999999999999899999999999999999999 577899999999999


Q ss_pred             HhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH-HHHhCcHHHHHHhcCCCChhhHH
Q 037142           85 SNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIEAGVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        85 ~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~i~~l~~~L~~~~~~v~~  162 (383)
                      ++++..+. .+......|++|.|++++.+++..+++.++|+|.|++.+  +++++. +.+.|+++.|+++|++++++.+.
T Consensus       471 ~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~  548 (2102)
T PLN03200        471 AILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKNGGPKGQE  548 (2102)
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence            99998663 344555699999999999999999999999999999987  445555 44779999999999999999999


Q ss_pred             HHHHHHhhhhcCCCcc-------------------------------------ccceecCCChHHHHHhhccccchhHHH
Q 037142          163 QALHTVGNIARGDYSQ-------------------------------------TLYIINCGALPYLLGLLIDNHKTSIKN  205 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~-------------------------------------~~~l~~~~~i~~l~~ll~~~~~~~~~~  205 (383)
                      .++++|.+++...+..                                     .+.....|+++.|..++.++ ++.+++
T Consensus       549 ~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk  627 (2102)
T PLN03200        549 IAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQE  627 (2102)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHH
Confidence            9999999996432211                                     01112458999999999999 999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD  285 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  285 (383)
                      .|+|+|.|++.++++..+.++..|++++++.++++++.+++++|+|+|.|++...+..+...+++.|++++|++++++++
T Consensus       628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d  707 (2102)
T PLN03200        628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS  707 (2102)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999998777788888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .+++..++.+|.+++..++.              ...+.+.|+++.|.+++++++++.++.|..+|..+.....
T Consensus       708 ~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        708 IEVAEQAVCALANLLSDPEV--------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             hHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            99999999999999987653              3336688999999999999999999999999988876654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=8.5e-30  Score=210.49  Aligned_cols=338  Identities=19%  Similarity=0.238  Sum_probs=289.5

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++. ++++..+...|++.++.++-++.+..+|.++..+|.|++.. .+.|+.++..|++|.|++++ ++.|..++..+
T Consensus       152 nLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyyc  228 (550)
T KOG4224|consen  152 NLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYC  228 (550)
T ss_pred             hhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHH
Confidence            56666 78899999999999999988889999999999999999964 58999999999999999999 78899999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhc--hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142           81 TWTLSNLCGGKPRPIFDQVRP--CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ  158 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~--~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~  158 (383)
                      +.+++|++.+...+......+  .+|.|+.++.++++.++.++..+|.+++..  .+.+..+.+.|.+|.++++|+++..
T Consensus       229 ttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~  306 (550)
T KOG4224|consen  229 TTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMG  306 (550)
T ss_pred             HHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcch
Confidence            999999998864444444444  999999999999999999999999999987  7788889999999999999999988


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      ........|++|++-+.-+. -.+.+.|++.+|+.+|...++++++..|..+|.|++..+......+++.|.+|.+..++
T Consensus       307 plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~  385 (550)
T KOG4224|consen  307 PLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL  385 (550)
T ss_pred             hHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence            88889999999999765533 45889999999999999886788999999999999998888899999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142          239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ  318 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~  318 (383)
                      .++..+++.+...+++.++.+  ......+.+.|+++.|+.++.+.+.+++-++..+|.|+...-+             .
T Consensus       386 lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-------------~  450 (550)
T KOG4224|consen  386 LDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-------------H  450 (550)
T ss_pred             hcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-------------H
Confidence            999999999999999999887  4667888999999999999999999999999999999987433             3


Q ss_pred             HHHHHHHh-----ccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          319 YAQLVEEA-----KGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       319 ~~~~l~~~-----~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      |.++++--     |.-..|.+++.+.+..+...+.+.+..+..+.+
T Consensus       451 YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  451 YARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            44433221     233345566666666677777777766666554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-28  Score=202.53  Aligned_cols=293  Identities=20%  Similarity=0.262  Sum_probs=260.7

Q ss_pred             CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhcCCCChhHHHHHH
Q 037142            4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLNNHENLSMKRIAT   81 (383)
Q Consensus         4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~~~~~~~~~~a~   81 (383)
                      +++.|+++.++..|++|.|+.+++++|+++|.++..++++++-+ ...|+.+.+.+  .++.|++++ ++++..++.+|.
T Consensus       195 Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~  272 (550)
T KOG4224|consen  195 THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAG  272 (550)
T ss_pred             hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHH
Confidence            35789999999999999999999999999999999999999975 47888888888  999999999 788999999999


Q ss_pred             HHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC-Chhh
Q 037142           82 WTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP-SQSV  160 (383)
Q Consensus        82 ~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~-~~~v  160 (383)
                      -+|.|++.+..........|.+|.++++++++..........|+.|++.+  +-+-..+.+.|++.+|+.+|+.. +.++
T Consensus       273 lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih--plNe~lI~dagfl~pLVrlL~~~dnEei  350 (550)
T KOG4224|consen  273 LALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH--PLNEVLIADAGFLRPLVRLLRAGDNEEI  350 (550)
T ss_pred             HHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc--cCcccceecccchhHHHHHHhcCCchhh
Confidence            99999999976666677799999999999988878888888999999987  55666788899999999999984 5669


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                      +-.|..+|++|+...+.....+.+.|.++.+..++.+. .-.++.+.-.+++.++... ..+..+.+.|++|.|+.+..+
T Consensus       351 qchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s  428 (550)
T KOG4224|consen  351 QCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGS  428 (550)
T ss_pred             hhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCc
Confidence            99999999999988888888899999999999999998 8999999999999887654 778899999999999999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLER------EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      .+.+++..|+.+|.|++..  .++...+++      .|+-..|..++.+.+..++..+.|.+..+++...
T Consensus       429 ~s~Ev~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  429 ESEEVRGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             cchhhcccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999987  455555554      2566679999999999999999999999987543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=1.6e-24  Score=201.71  Aligned_cols=329  Identities=20%  Similarity=0.186  Sum_probs=276.7

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL   84 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L   84 (383)
                      -..+++..+.+.|+++.|.+++.+++.+++..++++|.|++.+ ++.|..++..|++|.|+.+|. +  +..+..++.+|
T Consensus       319 i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iL  394 (708)
T PF05804_consen  319 IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK-D--PNFREVALKIL  394 (708)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHH
Confidence            3578999999999999999999999999999999999999986 488999999999999999994 3  34567799999


Q ss_pred             HhhcCCCCCCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142           85 SNLCGGKPRPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ  163 (383)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~  163 (383)
                      .+++.+...+......+++|.+.+++.. +++.+...+++.+.|++.+  ..+.+.+++.++++.|+...-...+.+   
T Consensus       395 y~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~--~rnaqlm~~g~gL~~L~~ra~~~~D~l---  469 (708)
T PF05804_consen  395 YNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN--KRNAQLMCEGNGLQSLMKRALKTRDPL---  469 (708)
T ss_pred             HHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC--HHHHHHHHhcCcHHHHHHHHHhcccHH---
Confidence            9999988777777778999999997664 5677788889999999987  678888888888999988775543323   


Q ss_pred             HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--
Q 037142          164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--  241 (383)
Q Consensus       164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--  241 (383)
                      .++.++|++.+++.....+.  +++..++..+..+.+++...+++++|+|+...+.+..+.+-+.+++|.+.+.+..+  
T Consensus       470 LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~  547 (708)
T PF05804_consen  470 LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS  547 (708)
T ss_pred             HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence            46799999988865444333  57788888888776889999999999999887656666666789999999999764  


Q ss_pred             chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142          242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY  319 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  319 (383)
                      .+++..+++.+++.++..  +.....+.+.|+++.|++++..  +|.+++.+.++++++++.+.+..             
T Consensus       548 ~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------  612 (708)
T PF05804_consen  548 EDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------  612 (708)
T ss_pred             ChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------
Confidence            568999999999999975  7888888899999999999985  47899999999999999875533             


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ..++.+.+....+.++.+++|.+|++.|..+|+-..+.++
T Consensus       613 ~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  613 EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            3456788999999999999999999999998887777765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.90  E-value=5.1e-21  Score=178.41  Aligned_cols=349  Identities=16%  Similarity=0.131  Sum_probs=274.6

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+|. +++....+.+.|+++.|+++|++++.++...++++|.+++... +++..+.+.|+++.|.+++ ++++..++..+
T Consensus       275 NLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl-~s~~~~l~~~a  351 (708)
T PF05804_consen  275 NLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLL-PSENEDLVNVA  351 (708)
T ss_pred             HHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHh-cCCCHHHHHHH
Confidence            3444 6788999999999999999999999999999999999999764 7899999999999999999 78889999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChh
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQS  159 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~  159 (383)
                      +++|.||+.+...+......|++|.|+.++.++  ..+..++.+|++++..  ++....+..++++|.+++++-. +++.
T Consensus       352 LrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d--d~~r~~f~~TdcIp~L~~~Ll~~~~~~  427 (708)
T PF05804_consen  352 LRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD--DEARSMFAYTDCIPQLMQMLLENSEEE  427 (708)
T ss_pred             HHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC--HhhHHHHhhcchHHHHHHHHHhCCCcc
Confidence            999999999987777777899999999999865  4666789999999986  5666677778899999998655 6777


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      +...++..+.|++.+.. +.+.+.+.++++.|+.......++    -.+..+.|++.+++.....+.  +++..|+.++.
T Consensus       428 v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~  500 (708)
T PF05804_consen  428 VQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVS  500 (708)
T ss_pred             ccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhh
Confidence            77778888999986654 557788888899999876655232    245789999988755554443  36777777776


Q ss_pred             c-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142          240 N-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDV  316 (383)
Q Consensus       240 ~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~  316 (383)
                      . .+.+..-++..+|+|+... +....+.+-+.+++|.|.+.+..+  ++++...++-.+..++..              
T Consensus       501 ~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--------------  565 (708)
T PF05804_consen  501 SGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--------------  565 (708)
T ss_pred             cCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--------------
Confidence            5 4788999999999999876 334455555689999999999754  457888888888877742              


Q ss_pred             cHHHHHHHHhccHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCCC-----------CCCcccccccccccchhh
Q 037142          317 NQYAQLVEEAKGLEKIENLQRH--DNYEIHEKSAKILETYWCGRVV-----------GPQPGLLYAGNEENEEED  378 (383)
Q Consensus       317 ~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  378 (383)
                      +....++.+.|.++.|.+++..  +++++.-+....+..+...++.           .-+..+.++.|.+.|..+
T Consensus       566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~  640 (708)
T PF05804_consen  566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVC  640 (708)
T ss_pred             HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHH
Confidence            2356778899999999999775  4567767777777777666542           333445555666666543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.85  E-value=2.3e-19  Score=163.68  Aligned_cols=340  Identities=19%  Similarity=0.184  Sum_probs=264.7

Q ss_pred             ccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH--HHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142            2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR--FRDLVLGEAALIPLLTQLNNHENLSMKRI   79 (383)
Q Consensus         2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~~L~~~~~~~~~~~   79 (383)
                      +|.++.+-+..+-+.|.|+.|+.+|.+...+++.+|+++|.|+..+...  .+-.+.+.++++.++++|....|.++++.
T Consensus       260 lcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~  339 (717)
T KOG1048|consen  260 LCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVREL  339 (717)
T ss_pred             HHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHH
Confidence            3567788888999999999999999999999999999999999976554  88889999999999999977789999999


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc----------C----CHHHHHHHHHHHHHhccCCCchHHHHHHH-hC
Q 037142           80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS----------N----DEHVMSNACWGLSLLCDGGKNDEIQAVIE-AG  144 (383)
Q Consensus        80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~----------~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~  144 (383)
                      +..+|+||++.+ ......+...+..|..-+-.          +    +.++..++..||.|++.. ..+..+.+.+ .|
T Consensus       340 iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~-~~eaR~~mr~c~G  417 (717)
T KOG1048|consen  340 ITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSA-GQEAREQMRECDG  417 (717)
T ss_pred             HHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccch-hHHHHHHHhhccc
Confidence            999999999984 33444556666666654431          1    367899999999999986 5566666654 58


Q ss_pred             cHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCCcc----------------------------------------
Q 037142          145 VCPRLVKLLGH------PSQSVLTQALHTVGNIARGDYSQ----------------------------------------  178 (383)
Q Consensus       145 ~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~~~----------------------------------------  178 (383)
                      ++..|+..+++      .|....+++...++|+++.-...                                        
T Consensus       418 LIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~  497 (717)
T KOG1048|consen  418 LIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCD  497 (717)
T ss_pred             hHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhccc
Confidence            89999988863      56778899999999998543300                                        


Q ss_pred             -------------ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH----HHHHHH-HhcCChHHHHHHhhc
Q 037142          179 -------------TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR----EQIQAV-IDAGLIGPLVNLLQN  240 (383)
Q Consensus       179 -------------~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~----~~~~~~-~~~~~l~~L~~ll~~  240 (383)
                                   ...+.+..+++.-..++....++.+.+.++++|.|++++..    .....+ .+..+++.++++++.
T Consensus       498 ~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~  577 (717)
T KOG1048|consen  498 DLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN  577 (717)
T ss_pred             ccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc
Confidence                         01122223444444555444378899999999999998653    344444 478899999999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC------CHHHHHHHHHHHHHHHHhchhcccCcCCCC
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP------DPQIVTVCLKALENILKVGEAEKNTDTDIG  314 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~  314 (383)
                      ++..+...++.+|.|++.+  .. .+.++..++++.|++.|...      +.++...++..|.+++......        
T Consensus       578 ~~~~vv~s~a~~LrNls~d--~r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~n--------  646 (717)
T KOG1048|consen  578 DDSDVVRSAAGALRNLSRD--IR-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLN--------  646 (717)
T ss_pred             CCchHHHHHHHHHhhhccC--ch-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHH--------
Confidence            9999999999999999987  23 44445688999999999754      3588889999999999654432        


Q ss_pred             cccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCC
Q 037142          315 DVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       315 ~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~  359 (383)
                           .+-+.+.+++++|.-+..+. ++++.+.|...+..++...+
T Consensus       647 -----Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  647 -----AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             -----HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence                 33355888999999997764 45788999999999988776

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=4.1e-17  Score=150.73  Aligned_cols=334  Identities=18%  Similarity=0.184  Sum_probs=260.1

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      ..+..+.|...|.++++.+|..+++.+++++.++......+.+.++++.++.++ .+++..+...|+.+|.+++...+..
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~  153 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGL  153 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhH
Confidence            346778889999999999999999999999988888888888899999999999 7889999999999999999876555


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      ...+..+.++.|..++...+..+|..+..++.+++.. +++....+.+.|+++.++..++++|.-++..++.+|..++. 
T Consensus       154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            4455567789999999888889999999999999988 77888888889999999999999999999999999999998 


Q ss_pred             CCccccceecCCChHHHHHhhccccchh-----HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTS-----IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEA  249 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~-----~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  249 (383)
                      .++..+.+.+.|+++.+..++.+.....     +....+...++++...+...... -..++..+.+++.+.++..+..|
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A  310 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL-YPAFLERLFSMLESQDPTIREVA  310 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHH
Confidence            6667788899999999999997652222     22334467788877443333221 13466777788888999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHH-HHc-----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH
Q 037142          250 AWAISNATFGGTHEQIKYL-ERE-----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV  323 (383)
Q Consensus       250 ~~~l~~l~~~~~~~~~~~l-~~~-----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  323 (383)
                      ..+++.++..  .+....+ ...     .++........++..+++..++.++.+++......+...    -.......+
T Consensus       311 ~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~----i~~~~~~w~  384 (503)
T PF10508_consen  311 FDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND----ILSITESWY  384 (503)
T ss_pred             HHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH----HHHHHHHHH
Confidence            9999999966  5666666 332     245555666667788999999999999987655322110    001111112


Q ss_pred             HHh--ccHH-HHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          324 EEA--KGLE-KIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       324 ~~~--~~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      ...  +... .+..++.+|=++++..+..++..++...
T Consensus       385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~  422 (503)
T PF10508_consen  385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP  422 (503)
T ss_pred             HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence            222  2233 6778888898999999999998887765

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.76  E-value=1.4e-17  Score=159.14  Aligned_cols=341  Identities=19%  Similarity=0.156  Sum_probs=266.3

Q ss_pred             CCChHHHHHHHhCCChHHHHHhhCC---CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHH------HH----hcC
Q 037142            4 SKTLEDKKAVVDHGAVPIFVKLLAS---PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLL------TQ----LNN   70 (383)
Q Consensus         4 ~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~------~~----L~~   70 (383)
                      +.+++.+..+...|.++.|+++|..   .+.+.+..|-.+|.||....++....-.+..++..|=      ..    ++.
T Consensus       222 Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa  301 (2195)
T KOG2122|consen  222 SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA  301 (2195)
T ss_pred             ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999975   3568899999999999976665444333333333322      11    111


Q ss_pred             -------CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc---------C---CHHHHHHHHHHHHHhccC
Q 037142           71 -------HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS---------N---DEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        71 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~---------~---~~~~~~~~~~~l~~l~~~  131 (383)
                             .++..-...|+.+|..++.+.+.+.....-|+++.+..|+.-         +   ...+|+++..+|.||+.+
T Consensus       302 r~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFG  381 (2195)
T KOG2122|consen  302 RGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFG  381 (2195)
T ss_pred             cCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccc
Confidence                   112233335666677777766555666668888888887761         1   267999999999999998


Q ss_pred             CCchHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC-CccccceecCCChHHHHHhhccccchhHHHHHHH
Q 037142          132 GKNDEIQAVI-EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD-YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACW  209 (383)
Q Consensus       132 ~~~~~~~~~~-~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~  209 (383)
                       +..+...++ ..|++..++..|.+..+++......+|+||+=.- .+....+-+.|-+..|..+.-....+...+..+.
T Consensus       382 -Dv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS  460 (2195)
T KOG2122|consen  382 -DVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS  460 (2195)
T ss_pred             -cccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence             655555554 4599999999999988899999999999999444 4445555667888888887655547788999999


Q ss_pred             HHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcC----chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcC
Q 037142          210 IISNITAGNREQIQAVI-DAGLIGPLVNLLQNA----VFYIKKEAAWAISNATFGG--THEQIKYLEREGCIKPLCDLLL  282 (383)
Q Consensus       210 ~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~  282 (383)
                      +|+||+.++.+++..|. -.|.+..|+.+|...    ...+-+.|..+|.|.....  +..+.+.+.+.+++..|+..|+
T Consensus       461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK  540 (2195)
T KOG2122|consen  461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK  540 (2195)
T ss_pred             HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence            99999998888888887 478899999999753    5567788888888876543  4577888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          283 CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       283 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      +..-.++-++|.+|+||...+..+|             ++|++.|.+..|.+|+++++..|..-+...|.++...-
T Consensus       541 S~SLTiVSNaCGTLWNLSAR~p~DQ-------------q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  541 SHSLTIVSNACGTLWNLSARSPEDQ-------------QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hcceEEeecchhhhhhhhcCCHHHH-------------HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999998877765             56999999999999999999999999988888887654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.73  E-value=1.3e-15  Score=126.50  Aligned_cols=240  Identities=18%  Similarity=0.167  Sum_probs=192.7

Q ss_pred             hhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           98 QVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        98 ~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      ...+-++.++.+|+ +.|+.+++.++.++.+.+..  +.+...+.+.|+++.+..+|.++++.++..|+.++.|++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            34667889999998 56899999999999999876  6778888899999999999999999999999999999987765


Q ss_pred             ccccceecCCChHHHHHh-hccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          177 SQTLYIINCGALPYLLGL-LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~l-l~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      ...+  ++. .++.+.+. .+.+-+..++..++++|.|++..+ +....+  .+.++.++.++.+++..+|..+..+|.|
T Consensus        87 n~~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   87 NQEQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hHHH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4332  332 45555554 344347899999999999998665 333333  3479999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcccCcC-CCCcccHHHHHHHHhc-cHHHH
Q 037142          256 ATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEKNTDT-DIGDVNQYAQLVEEAK-GLEKI  332 (383)
Q Consensus       256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~L  332 (383)
                      ++.+  +...+.++..++...++.+++.+ +.++...++..+.|+...-.+....+. +.........+|.+.+ ..++|
T Consensus       161 LS~n--p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  161 LSEN--PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             hccC--HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence            9987  78899999999999999999876 668889999999999776554433322 2334555667777777 78899


Q ss_pred             HHHhcCCCHHHHHHH
Q 037142          333 ENLQRHDNYEIHEKS  347 (383)
Q Consensus       333 ~~l~~~~~~~v~~~a  347 (383)
                      ..+.+|++++|+.+.
T Consensus       239 ~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  239 QALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHcCCCHHHhhhc
Confidence            999999999998764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=3.6e-15  Score=123.10  Aligned_cols=285  Identities=17%  Similarity=0.175  Sum_probs=231.0

Q ss_pred             HHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142           10 KKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL   87 (383)
Q Consensus        10 ~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l   87 (383)
                      ...+.+..+...++++|..  .+.++-...+.++..-+...+.+|+.+++.++++.+.+.|+......+.+.+.|++.-+
T Consensus       138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l  217 (461)
T KOG4199|consen  138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL  217 (461)
T ss_pred             CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence            3456777888999999865  67788888888888888778899999999999999998886555557889999999999


Q ss_pred             cCCCCCCC----------hhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-
Q 037142           88 CGGKPRPI----------FDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-  155 (383)
Q Consensus        88 ~~~~~~~~----------~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-  155 (383)
                      ..++..+.          .+...+++..|...++- -+|.+...++.+|..++-.  ++.++.+.+.|++..++.++.+ 
T Consensus       218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr--~E~C~~I~e~GGl~tl~~~i~d~  295 (461)
T KOG4199|consen  218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR--DEICKSIAESGGLDTLLRCIDDS  295 (461)
T ss_pred             cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHhhh
Confidence            88764332          12235678888888873 3688999999999999987  7899999999999999999988 


Q ss_pred             CChh---hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          156 PSQS---VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       156 ~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                      .+..   ....+++.|+.++ ++++....+++.|+.+.++.++. +..+|.+...++.+++-++...|+....+++.|+-
T Consensus       296 n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a  374 (461)
T KOG4199|consen  296 NEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAA  374 (461)
T ss_pred             chhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchH
Confidence            3333   4567888888887 45557778999999999998774 44489999999999999999999999999999999


Q ss_pred             HHHHHHhhc-C-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142          232 GPLVNLLQN-A-VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI  299 (383)
Q Consensus       232 ~~L~~ll~~-~-~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l  299 (383)
                      ...++.|+. + ...+++.|||+|.|++.. +.++...++. .+++.|+...+..++.+...+-.+|.-+
T Consensus       375 ~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  375 DLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            999999974 3 678999999999999987 4567777666 4678888888888777776666666544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.6e-16  Score=134.18  Aligned_cols=326  Identities=17%  Similarity=0.132  Sum_probs=255.8

Q ss_pred             hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      .+++..+.+.|+++.|++++..++++++...+..+.|++.++ ..+..++..|.+|.+..+|.++   .-...|+..+..
T Consensus       335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh  410 (791)
T KOG1222|consen  335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYH  410 (791)
T ss_pred             ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCc---ccchhhhhhhhh
Confidence            467888999999999999999999999999999999999876 7888899999999999999432   234567888888


Q ss_pred             hcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHH
Q 037142           87 LCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQA  164 (383)
Q Consensus        87 l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a  164 (383)
                      ++.+...+.......+++.+.+.+- ..+.++-...+....|+|.+  ..+.+.+++...+..|+..- +..|+ +   .
T Consensus       411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln--kRNaQlvceGqgL~~LM~ra~k~~D~-l---L  484 (791)
T KOG1222|consen  411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN--KRNAQLVCEGQGLDLLMERAIKSRDL-L---L  484 (791)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc--cccceEEecCcchHHHHHHHhcccch-H---H
Confidence            9888766666777889999887665 44566666666666788876  45666677766677776654 44443 2   3


Q ss_pred             HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--c
Q 037142          165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--V  242 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~  242 (383)
                      ...+++++.+.......+++  .+.-|...++...++....+++++++|+.-.+-+....+.+.+.+|.+-..+..+  .
T Consensus       485 mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e  562 (791)
T KOG1222|consen  485 MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE  562 (791)
T ss_pred             HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc
Confidence            56788898887765555554  4666777777665788899999999999887767777777899999999999864  5


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA  320 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~  320 (383)
                      .++..+.+.+++.++..  ......+...++++.|+++++.  .|.+.+.+.+..+..++.....             ..
T Consensus       563 ddLvL~~vi~~GT~a~d--~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~  627 (791)
T KOG1222|consen  563 DDLVLQIVIACGTMARD--LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RR  627 (791)
T ss_pred             hhhhhHHHHHhhhhhhh--hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HH
Confidence            56888888888888865  5666677788999999999985  4778888999999999886322             23


Q ss_pred             HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      -++.+...--.+.+|.+..|.+|++.|...|.-..+.++
T Consensus       628 ~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~  666 (791)
T KOG1222|consen  628 LMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK  666 (791)
T ss_pred             HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence            456777777889999999999999999988887766665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.72  E-value=1.6e-14  Score=133.73  Aligned_cols=328  Identities=16%  Similarity=0.145  Sum_probs=250.2

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC-CChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR-PIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~   97 (383)
                      .+.+..+|++.+.+....++.+|..+.... .....  ..+..+.|...| .++++.++..+++.+.++..++.. ....
T Consensus        40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   40 EPVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            345778888888888899999999988643 22222  345677888888 688999999999999999987633 2334


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ...++++.++.++.+++.++...|+.+|..++..  +.....+.+.+..+.|..++..+++.++..++.++.+++..+++
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence            4488999999999999999999999999999987  55666777878889999999998889999999999999999888


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHH------HHHHH
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIK------KEAAW  251 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~------~~a~~  251 (383)
                      ......+.|+++.++..+.++ |.-++.+++.++..++. .+...+.+.+.|+++.|..++.+...+.+      -..+.
T Consensus       194 ~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~  271 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK  271 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence            888888899999999999997 99999999999999998 56888999999999999999976422211      22346


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142          252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK  331 (383)
Q Consensus       252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (383)
                      +.++++.. ++....... ..++..+.+++.+.|+..+..|+.++..+....+..+...  ....+.+..      .+..
T Consensus       272 f~g~la~~-~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~--~~~~~~~~~------~l~~  341 (503)
T PF10508_consen  272 FFGNLARV-SPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLL--QKQGPAMKH------VLKA  341 (503)
T ss_pred             HHHHHHhc-ChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHH--hhcchHHHH------HHHH
Confidence            67777775 233332211 2367778888899999999999999999986554332110  000011111      2344


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCc
Q 037142          332 IENLQRHDNYEIHEKSAKILETYWCGRVVGPQP  364 (383)
Q Consensus       332 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  364 (383)
                      +-....++..+++-++...+..++....+++..
T Consensus       342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~  374 (503)
T PF10508_consen  342 IGDAIKSGSTELKLRALHALASILTSGTDRQDN  374 (503)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence            445566677888999999999988766553333

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=1.8e-14  Score=119.05  Aligned_cols=318  Identities=14%  Similarity=0.187  Sum_probs=245.1

Q ss_pred             hCCChHHHHHhhC---CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCC
Q 037142           15 DHGAVPIFVKLLA---SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        15 ~~g~i~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~   90 (383)
                      ..|..+.++..+.   +++..+...++.+|..+....|++    .+..+...++.+|..+ .+.++....+..+..-|..
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3567777666654   477888999999999998776654    4566788889998643 4667777777777777766


Q ss_pred             CCCC-ChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCc---------hHHHHHHHhCcHHHHHHhcCC-CCh
Q 037142           91 KPRP-IFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKN---------DEIQAVIEAGVCPRLVKLLGH-PSQ  158 (383)
Q Consensus        91 ~~~~-~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~---------~~~~~~~~~~~i~~l~~~L~~-~~~  158 (383)
                      .+.. ......++.+.+.+.+... ...+.+.++|+++.+... ++         ...+.+...|++..|++.++- -+|
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            6443 4444578899998777643 456888999999998865 22         344567777888999999876 468


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH---HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI---KNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~---~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      .+....+.+|..++-.++ ..+.+.+.|+++.++.++.+..+...   .+.++..|+.++ ++++.+..+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence            899999999999987655 55668899999999999987524444   456777788774 5669999999999999999


Q ss_pred             HHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhchhcccCcC
Q 037142          236 NLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVGEAEKNTDT  311 (383)
Q Consensus       236 ~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~  311 (383)
                      .++.  ..++.+..+++.+++.++.. .+++...+++.|+-...++.++..+  ..++.++++++.|++..+.....   
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR-~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~---  410 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLR-SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT---  410 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhc-CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc---
Confidence            9985  46899999999999999988 5788888899999999999888653  47999999999999987665433   


Q ss_pred             CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                                .+ -..|++.|.+.-...++.....+..+|..+
T Consensus       411 ----------~~-l~~GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  411 ----------IL-LANGIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             ----------hH-HhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence                      23 445568888887777877777777777654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-15  Score=130.12  Aligned_cols=325  Identities=15%  Similarity=0.095  Sum_probs=233.7

Q ss_pred             HHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----C-CChhHHHHHHH
Q 037142            9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----H-ENLSMKRIATW   82 (383)
Q Consensus         9 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----~-~~~~~~~~a~~   82 (383)
                      .+++-++.+.++.|.+..++++.++-.+++++|+|++.++.+.|..+.+.|+-..++.+|+.     . .+.+....+..
T Consensus        79 F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g  158 (604)
T KOG4500|consen   79 FRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFG  158 (604)
T ss_pred             HHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHH
Confidence            34444667788888888888999999999999999999999999999999998888888841     1 14467777888


Q ss_pred             HHHhhcCCC-CCCChhhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchH-HHHHHHhCcHHHHHHhcCC-CC
Q 037142           83 TLSNLCGGK-PRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDE-IQAVIEAGVCPRLVKLLGH-PS  157 (383)
Q Consensus        83 ~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~i~~l~~~L~~-~~  157 (383)
                      .|.|..-++ .-+.+....|+++.|...+.  -++...-+.......++... -.+. .....+..+.-.+++++.+ -+
T Consensus       159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~-~~e~~~~~~~d~sl~~~l~~ll~~~v~  237 (604)
T KOG4500|consen  159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF-VCEMLYPFCKDCSLVFMLLQLLPSMVR  237 (604)
T ss_pred             HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH-HHHhhhhhhccchHHHHHHHHHHHhhc
Confidence            899988876 33345556899998888876  33445555555555554433 1221 2223344556667777755 45


Q ss_pred             hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC-
Q 037142          158 QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-------TSIKNYACWIISNITAGNREQIQAVIDAG-  229 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-------~~~~~~a~~~l~nl~~~~~~~~~~~~~~~-  229 (383)
                      +.+..-++..+...+.++. ..-.+.+.|.+..++.++..-.+       -.+...++....-+..++ +..+++...+ 
T Consensus       238 ~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~  315 (604)
T KOG4500|consen  238 EDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQ  315 (604)
T ss_pred             cchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcH
Confidence            6677778888888886655 44458888999999988865211       122233444444444555 5666777544 


Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhch
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-----PDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +++.+..++.+.+......+..+|+|+++.  ...+.++++.+++..|++++..     ++.+++..++.+|.|+...-.
T Consensus       316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~--D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  316 FLDFLESWFRSDDSNLITMGSLAIGNFARR--DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            899999999999999999999999999998  5778888999999999998863     466889999999999986433


Q ss_pred             hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 037142          305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILE  352 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~  352 (383)
                      +              ...+...|..+.+...+....+.+..+-...+.
T Consensus       394 n--------------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlr  427 (604)
T KOG4500|consen  394 N--------------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLR  427 (604)
T ss_pred             c--------------hhhccccchHHHHHHHHHhcCCcchHHHHHHHH
Confidence            2              223567788887777777666666555555544

>PRK09687 putative lyase; Provisional

Probab=99.70  E-value=6.2e-15  Score=125.36  Aligned_cols=255  Identities=17%  Similarity=0.133  Sum_probs=199.1

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      --++.|.+.|.+.+..++..|++.|..+..           ..+++.+..++ .++++.++..++++|+.+......   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence            358899999999999999999999998763           23466777877 788999999999999998753211   


Q ss_pred             hhhhchhHHHHHh-hccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           97 DQVRPCLPTLAQL-VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        97 ~~~~~~i~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                        ....++.|..+ ++++++.++..++.+|++++.. .....     ...++.+...+.++++.|+..+..+|+.+.   
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~~-----~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---  156 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKK-NPLYS-----PKIVEQSQITAFDKSTNVRFAVAFALSVIN---  156 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-ccccc-----hHHHHHHHHHhhCCCHHHHHHHHHHHhccC---
Confidence              33577888877 6788999999999999999755 21111     124566778888999999999999997653   


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                              +...++.|+.++.++ ++.+|..|+.+|+.+...++         ...+.|+..+.+.+..||..|+++|+.
T Consensus       157 --------~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        157 --------DEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             --------CHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                    124689999999998 99999999999999944443         356678889999999999999999998


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142          256 ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL  335 (383)
Q Consensus       256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l  335 (383)
                      +-..            ..++.|++.+++++  ++..++.+|..+-.                        ...++.|.++
T Consensus       219 ~~~~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------------------~~a~p~L~~l  260 (280)
T PRK09687        219 RKDK------------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------------------KTLLPVLDTL  260 (280)
T ss_pred             cCCh------------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------------------HhHHHHHHHH
Confidence            6421            36889999998866  55667777765532                        2346788888


Q ss_pred             hc-CCCHHHHHHHHHHHHH
Q 037142          336 QR-HDNYEIHEKSAKILET  353 (383)
Q Consensus       336 ~~-~~~~~v~~~a~~~l~~  353 (383)
                      ++ +++..|..++.+.+..
T Consensus       261 ~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        261 LYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HhhCCChhHHHHHHHHHhc
Confidence            86 8899999999988764

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.67  E-value=2.5e-15  Score=144.14  Aligned_cols=267  Identities=19%  Similarity=0.178  Sum_probs=220.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----------CCChhHHHHHHHHHHhhcCCCCC-C-Chhhhhch
Q 037142           36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----------HENLSMKRIATWTLSNLCGGKPR-P-IFDQVRPC  102 (383)
Q Consensus        36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----------~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~~~~  102 (383)
                      .|+..|..++. ++++|..+.+.|++..+-.++.-           .....+++.+..+|.||...+.. + ...-..|+
T Consensus       317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            45566666665 46999999999999999887731           12457899999999999988732 2 33345899


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDYSQTLY  181 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  181 (383)
                      +..++..+.+...++....+.+|.||+...+......+.+.|-+..|+.+- +......+...+.+||||+.+..+++..
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            999999999999999999999999999873334445566778888887764 4466688999999999999888877776


Q ss_pred             eecC-CChHHHHHhhcccc---chhHHHHHHHHHHHHh---cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          182 IINC-GALPYLLGLLIDNH---KTSIKNYACWIISNIT---AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       182 l~~~-~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      +... |.+..|+.+|+...   .-.+.+.+-++|.|..   +.+..+++.+.+++++..|++.|.+.+..+..++|.+|+
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW  555 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW  555 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence            7664 88999999997541   3467778888888765   456788888899999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ||... +++..+.|++.|.++.|..++.+++..+..-+..+|.|++.+-.
T Consensus       556 NLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  556 NLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            99988 57889999999999999999999999999999999999998654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.65  E-value=4.4e-14  Score=129.60  Aligned_cols=303  Identities=17%  Similarity=0.175  Sum_probs=223.5

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC---
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR---   93 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~---   93 (383)
                      --+|..+.+|.++++.+|..|+..+..++..+.+.+..+...|+|+.|+.+| ++.+.+++.+|+++|.||......   
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll-~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALL-DHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHh-cCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            3467788999999999999999999999999999999999999999999999 789999999999999999988743   


Q ss_pred             CChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--------------CCh
Q 037142           94 PIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--------------PSQ  158 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--------------~~~  158 (383)
                      .-.....++++.++++++. .|.++++.+...|+||+..  +.....++.+ .++.|..-+-.              .+.
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence            2333448999999999985 7899999999999999976  3333334443 56666665422              135


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhcc-----ccchhHHHHHHHHHHHHhcCCH-----HHH-----
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLID-----NHKTSIKNYACWIISNITAGNR-----EQI-----  222 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl~~~~~-----~~~-----  222 (383)
                      .+...+.++|+|++....+..+.+-+. |+++.|+..+++     ..+....++++.++.|+...-.     ...     
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            788999999999998766666666664 889999988862     2256677888888888863211     000     


Q ss_pred             ---------------------HH----------------------HHhcCChHHHHHHh-hcCchhHHHHHHHHHHHhcC
Q 037142          223 ---------------------QA----------------------VIDAGLIGPLVNLL-QNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       223 ---------------------~~----------------------~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~  258 (383)
                                           ..                      +....++..=..++ .+.+..+.+.++.+|.|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                                 00                      00000111212223 24577888999999999988


Q ss_pred             CCC---HHHHHHH-HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          259 GGT---HEQIKYL-EREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       259 ~~~---~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      ...   ......+ .++.+.++|+++++.++..++..+..+|.|+......              ...+ ..++++.|.+
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--------------k~li-gk~a~~~lv~  613 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--------------KELI-GKYAIPDLVR  613 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--------------hhhh-hcchHHHHHH
Confidence            752   2233333 5688999999999999999999999999999875432              2223 3556666666


Q ss_pred             HhcC
Q 037142          335 LQRH  338 (383)
Q Consensus       335 l~~~  338 (383)
                      .+..
T Consensus       614 ~Lp~  617 (717)
T KOG1048|consen  614 CLPG  617 (717)
T ss_pred             hCcC
Confidence            6554

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.64  E-value=3e-14  Score=121.46  Aligned_cols=330  Identities=14%  Similarity=0.129  Sum_probs=245.1

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCC-------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCC
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLAS-------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHE   72 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~-------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~   72 (383)
                      |+|+.+.|+|..+.+.|+-..++..|+.       .+.+...-++..|.|..-++++++..+++.|+++.|...+. ..+
T Consensus       113 NiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~q  192 (604)
T KOG4500|consen  113 NICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQ  192 (604)
T ss_pred             hhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccc
Confidence            8899999999999999998888888764       22467777889999999999999999999999999988773 345


Q ss_pred             ChhHHHHHHHHHHhhcCCCC--CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142           73 NLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL  149 (383)
Q Consensus        73 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l  149 (383)
                      +.+.-+.......|+.+-..  ..+......+.-.+++++.. ..+.+.+.+...+...+++  +.-.-.+.+.|.+..+
T Consensus       193 Naa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen--d~Vkl~la~~gl~e~~  270 (604)
T KOG4500|consen  193 NAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN--DLVKLSLAQNGLLEDS  270 (604)
T ss_pred             cHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC--cceeeehhhcchHHHH
Confidence            66666776666666654331  12333445666677777764 4577888888899999876  3444456777888888


Q ss_pred             HHhcCC-C-------ChhhHHHHHHHHhhhhcCCCccccceecCC-ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142          150 VKLLGH-P-------SQSVLTQALHTVGNIARGDYSQTLYIINCG-ALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE  220 (383)
Q Consensus       150 ~~~L~~-~-------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~  220 (383)
                      ..+++. +       .......++....-+..+++.. +.+...+ +++.+.+.+.++ +..+...+.-+++|++..+ .
T Consensus       271 ~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~  347 (604)
T KOG4500|consen  271 IDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-D  347 (604)
T ss_pred             HHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-h
Confidence            888765 2       2233344555555555666543 3354444 899999999999 9999999999999999877 6


Q ss_pred             HHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142          221 QIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA  295 (383)
Q Consensus       221 ~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~  295 (383)
                      ....+++.+++..|++++..     ++.+++..++.+|.|++.-  ......+...|+.+.++.+++...|.++..-+..
T Consensus       348 ~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgT  425 (604)
T KOG4500|consen  348 ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGT  425 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHH
Confidence            67788899999999999864     4778889999999999875  4567777899999999999999999888888888


Q ss_pred             HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHH-HHHHHHH
Q 037142          296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYE-IHEKSAK  349 (383)
Q Consensus       296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~-v~~~a~~  349 (383)
                      +.-+...-++            ..+++..+-..+++|.+-..+++.. |.-....
T Consensus       426 lrM~~d~qe~------------~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnR  468 (604)
T KOG4500|consen  426 LRMIRDSQEY------------IACELAKNPELFEKLVDWSKSPDFAGVAGESNR  468 (604)
T ss_pred             HHHHHhchHH------------HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhH
Confidence            7655543221            2345555556677777777777664 4333333

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=2.8e-14  Score=118.54  Aligned_cols=227  Identities=20%  Similarity=0.198  Sum_probs=174.9

Q ss_pred             HHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           13 VVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        13 ~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      +++.+-++.|+.+|+. .||.+++.|+.++++.+.. +..++.+.+.|+++.+..+| +++++.++..|++++.|++...
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence            3667788999999996 7999999999999998764 58999999999999999999 7899999999999999999876


Q ss_pred             CCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHh
Q 037142           92 PRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG  169 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~  169 (383)
                      +....  +...++.+.+...+  -+.+++..++.+|.+++..  ++....+.  +.++.++.+|.+++..++..++++|.
T Consensus        86 en~~~--Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   86 ENQEQ--IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             hhHHH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            44332  34456666654443  3688999999999999865  33434443  36899999999999999999999999


Q ss_pred             hhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-------------HHHHHHH-h-cCChHHH
Q 037142          170 NIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-------------EQIQAVI-D-AGLIGPL  234 (383)
Q Consensus       170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-------------~~~~~~~-~-~~~l~~L  234 (383)
                      ||+.+.. ..+.++..+++..++.++....+.++...++..+.|+..+-.             .....++ + ..+.+.|
T Consensus       160 nLS~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  160 NLSENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             HhccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence            9997655 556688889999999999887578889999999999964211             1111222 2 2245556


Q ss_pred             HHHhhcCchhHHHH
Q 037142          235 VNLLQNAVFYIKKE  248 (383)
Q Consensus       235 ~~ll~~~~~~v~~~  248 (383)
                      ..+..|++++||..
T Consensus       239 ~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  239 QALANHPDPEVKEQ  252 (254)
T ss_pred             HHHHcCCCHHHhhh
Confidence            66666666666654

>PRK09687 putative lyase; Provisional

Probab=99.61  E-value=6.3e-14  Score=119.24  Aligned_cols=225  Identities=15%  Similarity=0.122  Sum_probs=179.0

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      .+++.+.+++.++++.+|..++++|+.+......      ....++.|..++.+++++.++..++.+|++++......  
T Consensus        54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--  125 (280)
T PRK09687         54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--  125 (280)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence            4678888999999999999999999998753211      11346777777557889999999999999997543211  


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                        ...+++.+...+.++++.++..++++|..+...            ..++.|+.+|.++++.|+..+..+|+.+...++
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~------------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~  191 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE------------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP  191 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH------------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence              233666777888899999999999999776533            267999999999999999999999999843222


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                               ..++.|+..+.+. ++.+|..|++.|+.+-.           ...+|.|+..+.+++  ++..++.+|+++
T Consensus       192 ---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~i  248 (280)
T PRK09687        192 ---------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGEL  248 (280)
T ss_pred             ---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence                     5688899999988 99999999999998632           246888899998766  678899999998


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHH
Q 037142          257 TFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALEN  298 (383)
Q Consensus       257 ~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~  298 (383)
                      ...            ..++.|..+++ ++|+.++..+.++|..
T Consensus       249 g~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        249 GDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             CCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            642            25888999986 7899999999988753

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.59  E-value=3.9e-13  Score=120.55  Aligned_cols=342  Identities=16%  Similarity=0.168  Sum_probs=222.8

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC-hhHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN-LSMK   77 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~-~~~~   77 (383)
                      |++.+.+++...+++.|.++.+..+++.  ..++.+...+.+++............+.+.+.++.|+++| +++| ..++
T Consensus        35 N~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LL-s~sD~~~~l  113 (678)
T KOG1293|consen   35 NLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLL-SESDSLNVL  113 (678)
T ss_pred             chhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHh-cCcchHhHH
Confidence            6777888888899999999999999986  4566776777778888877778888899999999999999 6666 8899


Q ss_pred             HHHHHHHHhhcCCCCCCChh---hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH-----
Q 037142           78 RIATWTLSNLCGGKPRPIFD---QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL-----  149 (383)
Q Consensus        78 ~~a~~~L~~l~~~~~~~~~~---~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l-----  149 (383)
                      ...+.++.++.+..+..+..   ....+++.+..++..+...+...-+....+++..  .+.....+.+|+.+.+     
T Consensus       114 e~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~--~~hq~Il~Na~i~ekI~~l~~  191 (678)
T KOG1293|consen  114 EKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST--KDHQLILCNAGILEKINILLM  191 (678)
T ss_pred             HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc--chhhheeccccchhhHHHHHH
Confidence            99999999998877443322   2355666655555523333333333333333333  1222222223332222     


Q ss_pred             ----------------------------------------------HHhcCCCChhhHHHHHHHHhhhhcCCCccc----
Q 037142          150 ----------------------------------------------VKLLGHPSQSVLTQALHTVGNIARGDYSQT----  179 (383)
Q Consensus       150 ----------------------------------------------~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~----  179 (383)
                                                                    ..++++++.+.+..++.++-++...+.+..    
T Consensus       192 ~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~  271 (678)
T KOG1293|consen  192 YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPW  271 (678)
T ss_pred             hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccccccccc
Confidence                                                          333344455555555555555553331000    


Q ss_pred             -cceecCC----------------------------------------------ChHHHHHhhc----------------
Q 037142          180 -LYIINCG----------------------------------------------ALPYLLGLLI----------------  196 (383)
Q Consensus       180 -~~l~~~~----------------------------------------------~i~~l~~ll~----------------  196 (383)
                       ..+.+.|                                              .++...+++.                
T Consensus       272 ~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~  351 (678)
T KOG1293|consen  272 WFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLIL  351 (678)
T ss_pred             ceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHH
Confidence             0000110                                              0111111110                


Q ss_pred             ------------------------------------cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142          197 ------------------------------------DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       197 ------------------------------------~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                                                          .. +.....+++-++.+++..-......+-...+..+|++++..
T Consensus       352 l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d  430 (678)
T KOG1293|consen  352 LNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD  430 (678)
T ss_pred             hhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC
Confidence                                                01 23344445544544443222222222245678899999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA  320 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~  320 (383)
                      ++..|+..+..+|+|+...-+ .....++.+|+++.+.+++.+.++.++..++|+|.++.-.++...            .
T Consensus       431 p~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~------------k  497 (678)
T KOG1293|consen  431 PEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE------------K  497 (678)
T ss_pred             cchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH------------H
Confidence            999999999999999987643 567788899999999999999999999999999999987665432            1


Q ss_pred             HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ..+-.--+...|..+.++|+..|++.|.+++.++..+..
T Consensus       498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            222222245788999999999999999999999988843

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.59  E-value=4.4e-12  Score=112.28  Aligned_cols=322  Identities=16%  Similarity=0.173  Sum_probs=235.9

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhc-----CChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142           17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGE-----AALIPLLTQLNNHENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~   90 (383)
                      ..+..|+.+++. .++++..+++..+..+..+++.....+.+.     ....+++.+| ..+|.-+...++.+++.+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            568888899886 788999999999999998887766666653     4667788888 567889999999999999876


Q ss_pred             CCCCCh-hhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHH
Q 037142           91 KPRPIF-DQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALH  166 (383)
Q Consensus        91 ~~~~~~-~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~  166 (383)
                      .+.... ......++.+...+++. +...+..++.++..+.+.  ++....+.+.++++.|+.+|+.  .+.+++..++-
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~--~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV--DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC--chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            543322 12233555666666654 477788888999999987  4555667777889999999986  35689999999


Q ss_pred             HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC------HHHHHHHHhcCChHHHHHHhhc
Q 037142          167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN------REQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                      +++.++...+ ....+...++++.++.+++....+++.+-++.++.|+...+      ......+++.|+.+.+-.+...
T Consensus       210 ~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r  288 (429)
T cd00256         210 CIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR  288 (429)
T ss_pred             HHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence            9999997665 44556677999999999988778999999999999998742      2344555677776655554443


Q ss_pred             --CchhHHHHHHHH-------HHHhcC--------------CC----C----HHHHHHHHHc--CChHHHHhhcC-CCCH
Q 037142          241 --AVFYIKKEAAWA-------ISNATF--------------GG----T----HEQIKYLERE--GCIKPLCDLLL-CPDP  286 (383)
Q Consensus       241 --~~~~v~~~a~~~-------l~~l~~--------------~~----~----~~~~~~l~~~--~~i~~L~~ll~-~~~~  286 (383)
                        .++++....-..       +..++.              ..    +    .++...+-++  .++..|+++++ +.|+
T Consensus       289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              355444322111       111110              00    0    2344454443  36788999885 5678


Q ss_pred             HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142          287 QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       287 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      .+...||.=++.+++..+.             -+..+...|+-+.+.+|+.|+|++|+..|+.++..+.
T Consensus       369 ~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         369 IILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             ceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888899999999986542             3556889999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=4.8e-14  Score=126.16  Aligned_cols=317  Identities=15%  Similarity=0.177  Sum_probs=220.3

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHh----cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLG----EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      .++|.|.++|.+++...++-|+.+|..+++++++.-+.-..    .-.+|.++++. +++++.+|..|+.++..+....+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            36789999999999999999999999999988765543111    12478888998 78899999999999998887654


Q ss_pred             CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      ..-...+..++..+..+-.+.++++|+++|.++..|... -.+....... ++++.+++.-++.|.+|...||.....++
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            444555577888888888899999999999999999987 3333333322 58889999999999999999999999998


Q ss_pred             cCCCccccceecC---CChHHHHHhhcccc--------------------------------------------------
Q 037142          173 RGDYSQTLYIINC---GALPYLLGLLIDNH--------------------------------------------------  199 (383)
Q Consensus       173 ~~~~~~~~~l~~~---~~i~~l~~ll~~~~--------------------------------------------------  199 (383)
                      .... ... ++..   .++|.|+.-+....                                                  
T Consensus       285 eqpi-~~~-~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  285 EQPI-CKE-VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             cCcC-cHH-HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            7652 222 2221   33444443222110                                                  


Q ss_pred             -----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCC----hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          200 -----KTSIKNYACWIISNITAGNREQIQAVIDAGL----IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       200 -----~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                           +..+|+.++.+|.-++        .++...+    +|.|-+.|.+....+|+.++.+++.++.++-......+-+
T Consensus       363 dD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe  434 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE  434 (885)
T ss_pred             ccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH
Confidence                 0234444333333333        2223334    4445555556789999999999999998764444444443


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 037142          271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKI  350 (383)
Q Consensus       271 ~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~  350 (383)
                        ++|.|+++|.++.+-||...+|.|.++....-....       ...+..+      ++.|.+.+-+.+..|++.|--+
T Consensus       435 --Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-------~~~f~pv------L~~ll~~llD~NK~VQEAAcsA  499 (885)
T KOG2023|consen  435 --LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-------DEYFKPV------LEGLLRRLLDSNKKVQEAACSA  499 (885)
T ss_pred             --HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------HhhhHHH------HHHHHHHHhcccHHHHHHHHHH
Confidence              799999999999999999999999988765433221       0111222      2333333446788999999888


Q ss_pred             HHHhcCCCCCC
Q 037142          351 LETYWCGRVVG  361 (383)
Q Consensus       351 l~~~~~~~~~~  361 (383)
                      ...+-++..++
T Consensus       500 fAtleE~A~~e  510 (885)
T KOG2023|consen  500 FATLEEEAGEE  510 (885)
T ss_pred             HHHHHHhccch
Confidence            87776665543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.57  E-value=5e-13  Score=132.47  Aligned_cols=274  Identities=16%  Similarity=0.131  Sum_probs=192.9

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      +.+.++.|++.|.++++.+|..|+..|+.+..           .+.++.|...| ++++..++..|+.+|..+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC--
Confidence            45678899999999999999999999998752           24578899999 78899999999999988854321  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                             ..+.+...++++++.++..++.+|..+... +            ...++..|.++++.++..++.+|+.+-  
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--  742 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG-D------------AALFAAALGDPDHRVRIEAVRALVSVD--  742 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC-C------------HHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence                   125677888888999999999888877543 1            234567788888888888888887651  


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                                  -.+.+...+.++ ++.+|..++.+|+.+....         ...++.|..++.++++.+|..|+.+|+
T Consensus       743 ------------~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg  800 (897)
T PRK13800        743 ------------DVESVAGAATDE-NREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALA  800 (897)
T ss_pred             ------------CcHHHHHHhcCC-CHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                        123456677777 8888888888888775432         123566777777788888888888887


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      .+....           ..+..+...+.++++.++..|+++|..+-.                        ...++.|..
T Consensus       801 ~~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------------------~~a~~~L~~  845 (897)
T PRK13800        801 ELGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAA------------------------DVAVPALVE  845 (897)
T ss_pred             hcCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------------------cchHHHHHH
Confidence            775320           123456667777777888888887764421                        112366677


Q ss_pred             HhcCCCHHHHHHHHHHHHHhc-CCCCCCCCcccccccccccchhhhcc
Q 037142          335 LQRHDNYEIHEKSAKILETYW-CGRVVGPQPGLLYAGNEENEEEDALG  381 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                      ++.+++..|+..|...|-.+- .......+...+.+.+...|..++.+
T Consensus       846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~a  893 (897)
T PRK13800        846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRA  893 (897)
T ss_pred             HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            777888888888888877751 11122444455555566666665544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3.7e-13  Score=123.61  Aligned_cols=307  Identities=18%  Similarity=0.187  Sum_probs=235.5

Q ss_pred             CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      .-++|.|+.+|+. .+.++...|+++|.+++..-|.-...+++.++||.|+.-|..-+=.++.++++.+|-.|++..+  
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence            3468999999997 7799999999999999998888899999999999999988555567889999999999998754  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      ......|++-..+..+..-...+++.|+.+..|+|....++....+.+  .+|.|..+|...|.+....++-++..++.+
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~  365 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADG  365 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            335568899999999998889999999999999998756667777776  589999999999999999999999998844


Q ss_pred             ---CCccccceecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhc--------------------
Q 037142          175 ---DYSQTLYIINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDA--------------------  228 (383)
Q Consensus       175 ---~~~~~~~l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~--------------------  228 (383)
                         .++..+++...|++....+++.-.+   +..+....++.++.++.+++.....+...                    
T Consensus       366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas  445 (1051)
T KOG0168|consen  366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANAS  445 (1051)
T ss_pred             cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccc
Confidence               4445556677777777776665321   11222223333333332222211111111                    


Q ss_pred             --------------------------------------------------------------------------------
Q 037142          229 --------------------------------------------------------------------------------  228 (383)
Q Consensus       229 --------------------------------------------------------------------------------  228 (383)
                                                                                                      
T Consensus       446 ~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t  525 (1051)
T KOG0168|consen  446 LHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGT  525 (1051)
T ss_pred             cccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCccc
Confidence                                                                                            


Q ss_pred             -----------------------------CChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHH
Q 037142          229 -----------------------------GLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPL  277 (383)
Q Consensus       229 -----------------------------~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L  277 (383)
                                                   .++|.|+++..+ .++.||..+..+|..+....+.+.+..++.+ ++-..+
T Consensus       526 ~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~l  605 (1051)
T KOG0168|consen  526 SRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHL  605 (1051)
T ss_pred             chhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHH
Confidence                                         135556666554 4789999999999999988888998888874 566667


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          278 CDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       278 ~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                      --++.++|..+..-|+....-+++.-+            +.|...|..+|++..+.+|...
T Consensus       606 AG~lsskD~~vlVgALQvAEiLmeKlp------------d~F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  606 AGMLSSKDLTVLVGALQVAEILMEKLP------------DTFSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             HhhhhcCCCeeEeehHHHHHHHHHHhH------------HHhhhhHhhhhHHHHHHHHhcc
Confidence            779999999999999998888887544            4578889999999999999773

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.2e-12  Score=122.93  Aligned_cols=322  Identities=14%  Similarity=0.142  Sum_probs=226.0

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC--C
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP--R   93 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~--~   93 (383)
                      ++++.|++..+++++..|+.|+.+|..+...-.. .+..+  ..+.+.+.+.+ .+++..++..++++++.++...+  .
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTM-TDPSSPVRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHhccch
Confidence            4577788888999999999999999998853221 11111  12244556666 45544599999999999987664  2


Q ss_pred             CChhhhhchhHHHH----HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHH
Q 037142           94 PIFDQVRPCLPTLA----QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALHT  167 (383)
Q Consensus        94 ~~~~~~~~~i~~l~----~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~~  167 (383)
                      .........+|.++    ..+..+|......++.++..++.. .+...+...+. +++..+...++  -++.+|..|+.+
T Consensus       195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~-~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~  272 (1075)
T KOG2171|consen  195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES-EPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEF  272 (1075)
T ss_pred             HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh-chHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHH
Confidence            22333355555544    445567777788899999999987 66666655543 66666666665  357788888888


Q ss_pred             HhhhhcCCCcccccee--------------------------------------------------cCC-------ChHH
Q 037142          168 VGNIARGDYSQTLYII--------------------------------------------------NCG-------ALPY  190 (383)
Q Consensus       168 L~~l~~~~~~~~~~l~--------------------------------------------------~~~-------~i~~  190 (383)
                      |..++..-+...+...                                                  .-|       +++.
T Consensus       273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~  352 (1075)
T KOG2171|consen  273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEA  352 (1075)
T ss_pred             HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHH
Confidence            8777654221110000                                                  000       1334


Q ss_pred             HHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       191 l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                      +..++.+. +...|++++.+|+.++.|+.+.....++ .+++.++..+.++++.||..|+.+++.++..-.+...++ ..
T Consensus       353 l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~  429 (1075)
T KOG2171|consen  353 LEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HH  429 (1075)
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HH
Confidence            45566677 8999999999999999999877766443 588888999999999999999999999998865444444 55


Q ss_pred             cCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH-HHHHHhcCCCHHHHHHHH
Q 037142          271 EGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE-KIENLQRHDNYEIHEKSA  348 (383)
Q Consensus       271 ~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~L~~l~~~~~~~v~~~a~  348 (383)
                      ..+++.|+..+++. ++.++..|..++.|+.+.+.+..        ..+|...+     ++ ++..|..++.+.+++.+.
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~--------l~pYLd~l-----m~~~l~~L~~~~~~~v~e~vv  496 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI--------LEPYLDGL-----MEKKLLLLLQSSKPYVQEQAV  496 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH--------HHHHHHHH-----HHHHHHHHhcCCchhHHHHHH
Confidence            57888899988875 66999999999999999888764        23444444     34 677788888899999998


Q ss_pred             HHHHHhcCCCC
Q 037142          349 KILETYWCGRV  359 (383)
Q Consensus       349 ~~l~~~~~~~~  359 (383)
                      ..|-.....-+
T Consensus       497 taIasvA~AA~  507 (1075)
T KOG2171|consen  497 TAIASVADAAQ  507 (1075)
T ss_pred             HHHHHHHHHHh
Confidence            77765444433

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.52  E-value=1.9e-13  Score=102.27  Aligned_cols=118  Identities=32%  Similarity=0.480  Sum_probs=109.6

Q ss_pred             HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142          140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR  219 (383)
Q Consensus       140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~  219 (383)
                      +.+.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+.+++.++ ++.++..++++|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            45678999999999999999999999999999998777778888889999999999998 99999999999999999887


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      .....+.+.|+++.+..++.+.+..+++.++|++.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=6.7e-13  Score=99.33  Aligned_cols=117  Identities=32%  Similarity=0.521  Sum_probs=108.5

Q ss_pred             eecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC
Q 037142          182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT  261 (383)
Q Consensus       182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  261 (383)
                      +.+.|+++.+++++.++ ++.++..+++++++++..+++....+++.++++.+.+++.++++.++..|+|+|+|++.. .
T Consensus         3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~   80 (120)
T cd00020           3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-P   80 (120)
T ss_pred             HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-c
Confidence            45779999999999998 899999999999999999889999999999999999999999999999999999999987 4


Q ss_pred             HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142          262 HEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       262 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~  300 (383)
                      +.....+.+.|+++.|.+.+.+.+.+++..++++|.+++
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            567777788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=2.4e-11  Score=116.02  Aligned_cols=303  Identities=18%  Similarity=0.190  Sum_probs=215.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---hHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHHHHHHhhcCCC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAES---PRFRDLVLGEAALIPLLTQLN---NHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      +.+.|.+.+.+++..+|..|+++++.++...   ...++.+  ...+|.++..+.   +..+......++.+|..+....
T Consensus       160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~  237 (1075)
T KOG2171|consen  160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE  237 (1075)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence            4556677777766669999999999988544   2333333  245666766663   3446666778888888888877


Q ss_pred             CCCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHH--HHh------------------------
Q 037142           92 PRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAV--IEA------------------------  143 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~------------------------  143 (383)
                      |..-......++...+....++  +..+|..|+.++..+++. .+...+..  .-.                        
T Consensus       238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~  316 (1075)
T KOG2171|consen  238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD  316 (1075)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence            7666666677888888888765  488999998888887765 22111110  000                        


Q ss_pred             ------------------------C-------cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHH
Q 037142          144 ------------------------G-------VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLL  192 (383)
Q Consensus       144 ------------------------~-------~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~  192 (383)
                                              |       +++.+-.++.++++.-+.+++.+|+.++.+..+.....++ .+++.++
T Consensus       317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl  395 (1075)
T KOG2171|consen  317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVL  395 (1075)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHH
Confidence                                    0       3444555667788888999999999999888766554333 5677788


Q ss_pred             HhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037142          193 GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLERE  271 (383)
Q Consensus       193 ~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~  271 (383)
                      ..+.++ ++.||..|+.+++.++..-....+.-....+.+.|+..+.+ .+++++.+|+.++.|+...+..+.+...++ 
T Consensus       396 ~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-  473 (1075)
T KOG2171|consen  396 NGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-  473 (1075)
T ss_pred             hhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-
Confidence            888999 99999999999999998665666666667788889988876 588999999999999998886666655443 


Q ss_pred             CChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC
Q 037142          272 GCIK-PLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN  340 (383)
Q Consensus       272 ~~i~-~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~  340 (383)
                      +++. .+..++.++.+.+++.++.+|..........-.         +|...+     ++.|...+...+
T Consensus       474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~---------pY~d~~-----Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI---------PYFDRL-----MPLLKNFLQNAD  529 (1075)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH---------hHHHHH-----HHHHHHHHhCCC
Confidence            4666 445566678889999999999999987654321         233333     567776655544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.47  E-value=1.4e-11  Score=116.77  Aligned_cols=295  Identities=22%  Similarity=0.240  Sum_probs=219.3

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      -+.+..++++.+++...+.-+.-++..+...+++....     ++..+.+-| .++++.++..|+.++++++..      
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl-~~~n~~~~~lAL~~l~~i~~~------  109 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDL-NSPNPYIRGLALRTLSNIRTP------  109 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHH-CSSSHHHHHHHHHHHHHH-SH------
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhh-cCCCHHHHHHHHhhhhhhccc------
Confidence            36777888888899999999999999999887773333     256777888 688999999999999999843      


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      .....+++.+.+++.++++.+|+.|+.++..+... .++....   . +++.+..++.++++.++..|+.++..+ ..++
T Consensus       110 ~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~  183 (526)
T PF01602_consen  110 EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND  183 (526)
T ss_dssp             HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred             chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence            45677899999999999999999999999999976 4433322   2 578999999999999999999999999 2232


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                      .....+. ...++.+..++... ++..+..+++++..++...+.....   ..+++.+..++++.++.|..+|+.++..+
T Consensus       184 ~~~~~~~-~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  184 DSYKSLI-PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             HHHTTHH-HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhH-HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            2111111 13345555555677 9999999999999998877655522   44677888888899999999999999998


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh
Q 037142          257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ  336 (383)
Q Consensus       257 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~  336 (383)
                      ...  .....     .+++.|..++.++++.++..++..|..++......                +.  ...-.+.-+.
T Consensus       259 ~~~--~~~~~-----~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~----------------v~--~~~~~~~~l~  313 (526)
T PF01602_consen  259 SPS--PELLQ-----KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA----------------VF--NQSLILFFLL  313 (526)
T ss_dssp             SSS--HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH----------------HG--THHHHHHHHH
T ss_pred             hcc--hHHHH-----hhHHHHHHHhhcccchhehhHHHHHHHhhcccchh----------------hh--hhhhhhheec
Confidence            865  33222     37889999999999999999999999888754111                11  1112233444


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCC
Q 037142          337 RHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       337 ~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .+++..|+.++.+++..+....+
T Consensus       314 ~~~d~~Ir~~~l~lL~~l~~~~n  336 (526)
T PF01602_consen  314 YDDDPSIRKKALDLLYKLANESN  336 (526)
T ss_dssp             CSSSHHHHHHHHHHHHHH--HHH
T ss_pred             CCCChhHHHHHHHHHhhcccccc
Confidence            47777788888877777665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.45  E-value=4.1e-11  Score=119.02  Aligned_cols=246  Identities=15%  Similarity=0.156  Sum_probs=194.1

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      .+.++.|.+.|+++++.+|..|+.+|..+....          ...+.|...| +++++.++..++.+|..+....    
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~----  715 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHL-GSPDPVVRAAALDVLRALRAGD----  715 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHh-cCCCHHHHHHHHHHHHhhccCC----
Confidence            467899999999999999999999999885321          1135677888 6789999999999998875321    


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                             ...+++.+.++++.++..++.+|..+..               .+.+...+.++++.|+..++.+|+.+....
T Consensus       716 -------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~  773 (897)
T PRK13800        716 -------AALFAAALGDPDHRVRIEAVRALVSVDD---------------VESVAGAATDENREVRIAVAKGLATLGAGG  773 (897)
T ss_pred             -------HHHHHHHhcCCCHHHHHHHHHHHhcccC---------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence                   2457788999999999999999987531               134677899999999999999999885432


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      .         ..++.|..+++++ ++.+|..++.+|+.+....          ...+.+...+.++++.||..|+.+|+.
T Consensus       774 ~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~  833 (897)
T PRK13800        774 A---------PAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAG  833 (897)
T ss_pred             c---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHh
Confidence            2         3378888999998 9999999999999885321          123457788889999999999999988


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142          256 ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL  335 (383)
Q Consensus       256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l  335 (383)
                      +...            ..++.|..+++++++.|+..|+++|..+-  .+                     ....+.|...
T Consensus       834 l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~~---------------------~~a~~~L~~a  878 (897)
T PRK13800        834 AAAD------------VAVPALVEALTDPHLDVRKAAVLALTRWP--GD---------------------PAARDALTTA  878 (897)
T ss_pred             cccc------------chHHHHHHHhcCCCHHHHHHHHHHHhccC--CC---------------------HHHHHHHHHH
Confidence            7532            24689999999999999999999998861  11                     1124667788


Q ss_pred             hcCCCHHHHHHHHHHHHH
Q 037142          336 QRHDNYEIHEKSAKILET  353 (383)
Q Consensus       336 ~~~~~~~v~~~a~~~l~~  353 (383)
                      +++++.+|+..|...|..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999988863

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.44  E-value=7.2e-12  Score=112.58  Aligned_cols=299  Identities=15%  Similarity=0.122  Sum_probs=204.1

Q ss_pred             cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHH---HHhcCChHHHHHH----HhcCChH--HHHHHhcCCCC
Q 037142            3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALG---NIAAESPRFRDLV----LGEAALI--PLLTQLNNHEN   73 (383)
Q Consensus         3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~---~l~~~~~~~~~~~----~~~g~i~--~L~~~L~~~~~   73 (383)
                      +++.++.+..+.+.|+.+.+.-++..-....|..|+.++.   ++...++.....+    ...|+.+  .+.+++ ++++
T Consensus       167 ~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~-k~~~  245 (678)
T KOG1293|consen  167 LSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLL-KDPD  245 (678)
T ss_pred             ccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhh-hCCC
Confidence            5566788888999999999988888878899999999999   7777766555443    3456555  344555 7777


Q ss_pred             hhHHHHHHHHHHhhcCCCCCC----C-hhhhhch---------------------------hHHHHHhhcc-CC------
Q 037142           74 LSMKRIATWTLSNLCGGKPRP----I-FDQVRPC---------------------------LPTLAQLVHS-ND------  114 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~~~----~-~~~~~~~---------------------------i~~l~~ll~~-~~------  114 (383)
                      ...+..++.++.++...+...    . ......+                           .-.+..+.+. .+      
T Consensus       246 ~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~  325 (678)
T KOG1293|consen  246 FSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEA  325 (678)
T ss_pred             ccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence            888888888888887765111    0 0111110                           0000101110 01      


Q ss_pred             -HHHHHHHHHHHHHhccCCCchHHHH----------------------HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142          115 -EHVMSNACWGLSLLCDGGKNDEIQA----------------------VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus       115 -~~~~~~~~~~l~~l~~~~~~~~~~~----------------------~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                       .+.....+.+-+.+... .......                      +.+......+.......|...+.+++.++.++
T Consensus       326 ~~~~~~ellf~~~sl~a~-~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~  404 (678)
T KOG1293|consen  326 TLKTTTELLFICASLAAS-DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF  404 (678)
T ss_pred             hhhhHHHHHHHHHHHhhc-chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence             11111222222233322 1111111                      11111112222223346778888999999888


Q ss_pred             hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHH
Q 037142          172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAW  251 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  251 (383)
                      +..-......+-...+..++++++..+ +..++..+++++.|++..-...+..++..|+++.+..++.+.++.+|..+.|
T Consensus       405 srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~  483 (678)
T KOG1293|consen  405 SRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLW  483 (678)
T ss_pred             HHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence            865554444455668899999999888 9999999999999999877788999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +|.++..+++..........=....+..+..++++.|++++...+.|++..+.
T Consensus       484 ~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  484 VLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            99999998765555555555556667778889999999999999999997643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.38  E-value=1.1e-10  Score=110.77  Aligned_cols=255  Identities=22%  Similarity=0.235  Sum_probs=190.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      ++..+.+=|.++++.++..|+++++++.  +++..+.+     ++.+.+++ .++++.+|+.|+.++..+....|..   
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~---  148 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL---  148 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC---
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH---
Confidence            5677778888999999999999999998  45555554     67888999 6889999999999999999875432   


Q ss_pred             hhhc-hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           98 QVRP-CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        98 ~~~~-~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                       ... .++.+.+++.++++.++..|+.++..+ .. +++....+.. ..++.+..++...++..+..+++.+..++...+
T Consensus       149 -~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~  224 (526)
T PF01602_consen  149 -VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP  224 (526)
T ss_dssp             -HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred             -HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence             222 799999999999999999999999999 33 2322222222 256777777788999999999999999886655


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                      .....   ..+++.+..++.+. ++.+..+++.++..+.... .     .-..+++.|..++.++++.+|..++.+|..+
T Consensus       225 ~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l  294 (526)
T PF01602_consen  225 EDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQL  294 (526)
T ss_dssp             HHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             hhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence            43311   35788888888888 9999999999999886644 3     2234677899999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       257 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      +... +...    . .....+..+..++++.++..++..+..++...
T Consensus       295 ~~~~-~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  295 AQSN-PPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             CCHC-HHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             hccc-chhh----h-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence            8763 1221    2 12222333334788899999999999888643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.38  E-value=7.3e-10  Score=105.77  Aligned_cols=259  Identities=16%  Similarity=0.094  Sum_probs=190.4

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      ++-.++++.+++.+++..+.-.+.+++...++..-.     ++..+.+-+ .++|+.+|..|+++++++...      ..
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~~------~i  137 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDT-TNSSPVVRALAVRTMMCIRVS------SV  137 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCcH------HH
Confidence            444556667778888888888888888766554322     256677777 688999999999999987654      34


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ...+++.+.+.+.+.++-+|+.|+.++..+... +++   .+.+.++++.+..+|.+.|+.|+.+|+.+|..+....+..
T Consensus       138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence            566788888999999999999999999999876 332   3344578899999999999999999999999998665532


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      ..  ...+.+..++..+... ++..+...+.+|......++...     ..++..+...+++.++.|.-+|+.++.++..
T Consensus       214 l~--l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        214 IE--SSNEWVNRLVYHLPEC-NEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             hH--HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            21  2234566677777766 78888888888866543332222     2457778888999999999999999999987


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      ..+++...... ..+-++++.++ +++++++..++..+..++...
T Consensus       286 ~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~  328 (746)
T PTZ00429        286 RCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF  328 (746)
T ss_pred             cCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence            64444333322 12446677764 577899999998887777644

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=2e-09  Score=93.80  Aligned_cols=304  Identities=15%  Similarity=0.101  Sum_probs=221.7

Q ss_pred             hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      ...-..+...+++..|++.|..++.++...+...|..++-.. +.+..+.+.|+++.|++++ ..++++++...+..+.|
T Consensus       294 ~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klf-p~~h~dL~~~tl~LlfN  371 (791)
T KOG1222|consen  294 ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLF-PIQHPDLRKATLMLLFN  371 (791)
T ss_pred             hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhc-CCCCHHHHHHHHHHhhh
Confidence            344456788899999999999999999999999999998654 6788888899999999999 78899999999999999


Q ss_pred             hcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHH
Q 037142           87 LCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQAL  165 (383)
Q Consensus        87 l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~  165 (383)
                      ++.+...+...+..|.+|.+..++.++..  ..-|...++.++..  +.....+.-...++.++..+-+ .+.+|-...+
T Consensus       372 lSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d--D~~K~MfayTdci~~lmk~v~~~~~~~vdl~li  447 (791)
T KOG1222|consen  372 LSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD--DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI  447 (791)
T ss_pred             ccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC--cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence            99998777777889999999999986652  23356677777765  4555566666788888876654 4445544444


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-Cchh
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFY  244 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~  244 (383)
                      ..--|+|.+. .+.+.+.+..++..|+...-...+.    --...+.|++.+.......+++  .+..|..++.. .+..
T Consensus       448 a~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~  520 (791)
T KOG1222|consen  448 ALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSES  520 (791)
T ss_pred             HHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHH
Confidence            3335666443 3566677777888888754333133    2345778888876555555554  34556666654 5667


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      .-.++..+++|+... +-+..+.+-+.+++|.+-..+..+  ..+++...+-++..+....              ....+
T Consensus       521 F~~EClGtlanL~v~-dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--------------~cA~L  585 (791)
T KOG1222|consen  521 FGLECLGTLANLKVT-DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--------------DCARL  585 (791)
T ss_pred             HHHHHHHHHhhcccC-CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--------------HHHHH
Confidence            888999999999875 334555666789999999988754  4456666666666665432              35667


Q ss_pred             HHHhccHHHHHHHhcC
Q 037142          323 VEEAKGLEKIENLQRH  338 (383)
Q Consensus       323 l~~~~~~~~L~~l~~~  338 (383)
                      +..+|.++.+.+|+..
T Consensus       586 la~a~~i~tlieLL~a  601 (791)
T KOG1222|consen  586 LAPAKLIDTLIELLQA  601 (791)
T ss_pred             hCccccHHHHHHHHHh
Confidence            8888899999988764

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.31  E-value=4.8e-10  Score=99.51  Aligned_cols=293  Identities=17%  Similarity=0.145  Sum_probs=200.8

Q ss_pred             ChHHHHHHHhC-----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            6 TLEDKKAVVDH-----GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         6 ~~~~~~~~~~~-----g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      ++.....|.+.     +....|+.+|..+|.-++..|+.+|+.+....+.........-.++.+...+++..+...+..+
T Consensus        85 ~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~  164 (429)
T cd00256          85 DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTA  164 (429)
T ss_pred             chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHH
Confidence            34445555553     5778888999999999999999999999865433211111111234455566333457788889


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS  157 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~  157 (383)
                      +.++..+....+.+......++++.|..+++..  +.+++.+++.|++-++-.  .+........++++.++++++. ..
T Consensus       165 v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~l~~i~k~s~K  242 (429)
T cd00256         165 ARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN--PHAAEVLKRLSLIQDLSDILKESTK  242 (429)
T ss_pred             HHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc--HHHHHhhccccHHHHHHHHHHhhhh
Confidence            999999999876665555677999999999853  579999999999999976  4455566667899999999987 67


Q ss_pred             hhhHHHHHHHHhhhhcCCC------ccccceecCCChHHHHHhhccc-cchhHHHHHHHH-------HHHHhc-------
Q 037142          158 QSVLTQALHTVGNIARGDY------SQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWI-------ISNITA-------  216 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~-------l~nl~~-------  216 (383)
                      .++..-++.+|.|+.....      .....+++.|+.+.+-.+-... .|+++....-..       +..++.       
T Consensus       243 EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~E  322 (429)
T cd00256         243 EKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSE  322 (429)
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8899999999999996432      1223345556555444333221 133333221111       111110       


Q ss_pred             -----------C-C----HHHHHHHHhcC--ChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 037142          217 -----------G-N----REQIQAVIDAG--LIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPL  277 (383)
Q Consensus       217 -----------~-~----~~~~~~~~~~~--~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L  277 (383)
                                 + +    .++...+-+.+  ++..|++++. +.++.+-.-||.=|+.++..- |.....+-+.|+=..+
T Consensus       323 l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~v  401 (429)
T cd00256         323 LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRV  401 (429)
T ss_pred             HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHH
Confidence                       0 0    12333333322  4778899985 457788888899999999873 5666666678999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          278 CDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       278 ~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      ++++.++|++|+.+|+.|+..++-
T Consensus       402 M~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         402 MRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2.2e-10  Score=96.86  Aligned_cols=190  Identities=19%  Similarity=0.206  Sum_probs=163.5

Q ss_pred             cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHH
Q 037142          112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYL  191 (383)
Q Consensus       112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l  191 (383)
                      +.+++-++.++.-|..++.+  -++...++..|++..++..+.+++..++..|+++|+..+.+++...+.+++.|+++.|
T Consensus        94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            44678888888889888886  5677788888999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037142          192 LGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGGTHEQIKYLE  269 (383)
Q Consensus       192 ~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~l~  269 (383)
                      +..++++.+..++..|+++++.+...++.....+...+++..|.+++++  .+...+..++..+..+.... ......+.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIAS  250 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHH
Confidence            9999987677888999999999999999999999998899999999998  57888999999999998763 33333444


Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ..++...+..+..+.+.++...++.++..++....
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            56777777788888888999999888877776443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=9.3e-11  Score=105.56  Aligned_cols=269  Identities=16%  Similarity=0.204  Sum_probs=187.1

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      .+|.|+++.+++++.+|..|+.++..+.-..+..-..-+ ..+++.+..+- +++++++|.+.+.++..|....+.+-..
T Consensus       175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~p  252 (885)
T KOG2023|consen  175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVP  252 (885)
T ss_pred             hHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence            589999999999999999999999887754333222222 23466666666 7889999999999999999877666666


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH--hCcHHHHHHhcCCCC------------------
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE--AGVCPRLVKLLGHPS------------------  157 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~i~~l~~~L~~~~------------------  157 (383)
                      -..++++++++..++.|+++...||.+...++.. + .....+..  ..++|.|+.-+.-++                  
T Consensus       253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeq-p-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr  330 (885)
T KOG2023|consen  253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-P-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR  330 (885)
T ss_pred             chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-c-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence            6689999999999999999999999999999987 3 22222211  135666665543211                  


Q ss_pred             --------------------------------------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH----hh
Q 037142          158 --------------------------------------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG----LL  195 (383)
Q Consensus       158 --------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~----ll  195 (383)
                                                            .+++...+.+|..++.        +....+++.+++    .|
T Consensus       331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L  402 (885)
T KOG2023|consen  331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHL  402 (885)
T ss_pred             hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHc
Confidence                                                  2233333333333321        122234444444    44


Q ss_pred             ccccchhHHHHHHHHHHHHhcCCHHHHHHHHh--cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHcC
Q 037142          196 IDNHKTSIKNYACWIISNITAGNREQIQAVID--AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLEREG  272 (383)
Q Consensus       196 ~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~~  272 (383)
                      .+. +..+|+.++.++|.++.|.-+   .++.  ..++|.++.+|.+..+-||..+||+|+..+...- .+..+++..  
T Consensus       403 ~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--  476 (885)
T KOG2023|consen  403 SSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--  476 (885)
T ss_pred             Ccc-hhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence            566 889999999999999976522   2222  2468899999999999999999999999876531 112223222  


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++..|+..+-+++.+|++.|+.++..+-+...
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            55566666668889999999999998877544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.27  E-value=8.8e-09  Score=88.55  Aligned_cols=323  Identities=15%  Similarity=0.155  Sum_probs=222.8

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHH------HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC
Q 037142           17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLV------LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG   89 (383)
Q Consensus        17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~------~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~   89 (383)
                      ..+..|+.+++. ..++....++..+..+...+......+      .+.-.-...+.+| ...+.-+.+...++++.++.
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~  143 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLAC  143 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHH
Confidence            357788888887 556777777777777665543222211      1223356778888 56778888889999999987


Q ss_pred             CCCCCChh-hhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-C-CChhhHHHHH
Q 037142           90 GKPRPIFD-QVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-H-PSQSVLTQAL  165 (383)
Q Consensus        90 ~~~~~~~~-~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-~-~~~~v~~~a~  165 (383)
                      ..+..... ...-....+...+++ .++.-...++.||..+...  ++....+....++..++..+. . .+.+++...+
T Consensus       144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            76333211 112233344445554 5677888889999999987  344444445556677777773 3 6788999999


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH------HHHHHHHhcCChHHHHHHhh
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR------EQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~  239 (383)
                      .+++.|+.+.. ..+.+...+.++.|..+++....+.|.+-++.++.|+....+      +....++..++.+.+-.+-.
T Consensus       222 fciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  222 FCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence            99999986554 456666679999999999887789999999999999987663      44556667777766666554


Q ss_pred             c--CchhHHHHHHHHH-------HHhcCC--------------CC--------HHHHHHHHHc--CChHHHHhhcCCC-C
Q 037142          240 N--AVFYIKKEAAWAI-------SNATFG--------------GT--------HEQIKYLERE--GCIKPLCDLLLCP-D  285 (383)
Q Consensus       240 ~--~~~~v~~~a~~~l-------~~l~~~--------------~~--------~~~~~~l~~~--~~i~~L~~ll~~~-~  285 (383)
                      .  .++++....-..-       ..+++.              ++        .+++..+-++  .++..|+.+|+.+ |
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D  380 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND  380 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence            3  3444443322221       111111              00        2334444432  4788899999865 6


Q ss_pred             HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      |.+...|+.-+..+++..+             .....+...||-+.+.+|++|+|++|+..|..++..+..
T Consensus       381 p~iL~VAc~DIge~Vr~yP-------------~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  381 PIILCVACHDIGEYVRHYP-------------EGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             CceeehhhhhHHHHHHhCc-------------hHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            8888889999999998644             456779999999999999999999999999998887654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.27  E-value=9.1e-11  Score=102.57  Aligned_cols=237  Identities=19%  Similarity=0.241  Sum_probs=164.1

Q ss_pred             HHHHHHhC---CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHh------cCChHHHHHHhcCCCChhHH
Q 037142            9 DKKAVVDH---GAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLG------EAALIPLLTQLNNHENLSMK   77 (383)
Q Consensus         9 ~~~~~~~~---g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~~L~~~~~~~~~   77 (383)
                      .+..+++.   +....++.+|+.  +++++..+++..+..+..+++...+.+..      .....++++++ +.+|..++
T Consensus        44 ~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~  122 (312)
T PF03224_consen   44 ERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQ  122 (312)
T ss_dssp             ------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHH
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHH
Confidence            34445553   346677777764  68999999999999999888777766654      23678888988 67799999


Q ss_pred             HHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc
Q 037142           78 RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL  153 (383)
Q Consensus        78 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L  153 (383)
                      ..++.+++.+....+........+.++.+++.+.    +++.+.+..++.++.++.+.  ++....+.+.++++.+...+
T Consensus       123 ~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~R~~f~~~~~v~~l~~iL  200 (312)
T PF03224_consen  123 LKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEYRQVFWKSNGVSPLFDIL  200 (312)
T ss_dssp             HHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chhHHHHHhcCcHHHHHHHH
Confidence            9999999999998766655433455566665555    45567889999999999986  67777788889999999999


Q ss_pred             ------CC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH-HHHHH
Q 037142          154 ------GH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE-QIQAV  225 (383)
Q Consensus       154 ------~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~-~~~~~  225 (383)
                            .. .+.+++..++.++|.++...+ ....+.+.++++.+..+++....+++.+-++.++.|++...++ ....+
T Consensus       201 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~m  279 (312)
T PF03224_consen  201 RKQATNSNSSGIQLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELM  279 (312)
T ss_dssp             H---------HHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             HhhcccCCCCchhHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence                  22 567889999999999986554 5555777889999999998877899999999999999986643 77777


Q ss_pred             HhcCChHHHHHHhhc--CchhHHHHH
Q 037142          226 IDAGLIGPLVNLLQN--AVFYIKKEA  249 (383)
Q Consensus       226 ~~~~~l~~L~~ll~~--~~~~v~~~a  249 (383)
                      +..++++.+-.+...  .|+++....
T Consensus       280 v~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  280 VLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             HHccHHHHHHHHhcCCCCCHHHHHHH
Confidence            788888777776654  467766543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.8e-10  Score=94.38  Aligned_cols=168  Identities=17%  Similarity=0.220  Sum_probs=141.4

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      +-++.+.++..|+...++.++++.+..+|..|+|+++.++..+|...+.+++.|+++.|+..+..+.+..++..|+.+++
T Consensus       113 ~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ais  192 (342)
T KOG2160|consen  113 DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAIS  192 (342)
T ss_pred             hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999977778889999999999


Q ss_pred             hhcCCC-CCCChhhhhchhHHHHHhhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 037142           86 NLCGGK-PRPIFDQVRPCLPTLAQLVHS--NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        86 ~l~~~~-~~~~~~~~~~~i~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~  162 (383)
                      ++.++. +........++...|...+++  .+...+..++..+..+... .......+...++...+..+....+.++..
T Consensus       193 sLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e  271 (342)
T KOG2160|consen  193 SLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSLGFQRVLENLISSLDFEVNE  271 (342)
T ss_pred             HHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHhhhhHHHHHHhhccchhhhH
Confidence            999998 555666667789999999998  5688999999999999977 444444555556666666667777888888


Q ss_pred             HHHHHHhhhhcC
Q 037142          163 QALHTVGNIARG  174 (383)
Q Consensus       163 ~a~~~L~~l~~~  174 (383)
                      .++.++..+...
T Consensus       272 ~~l~~~l~~l~~  283 (342)
T KOG2160|consen  272 AALTALLSLLSE  283 (342)
T ss_pred             HHHHHHHHHHHH
Confidence            888777666543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.3e-10  Score=102.90  Aligned_cols=272  Identities=19%  Similarity=0.242  Sum_probs=199.1

Q ss_pred             hHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142            7 LEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      |+....+++.++||.|++-|-. +..++-++++.+|..|+...   -+.+++.|++...+.+| +.....+++.|+.+..
T Consensus       244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~Lsyl-DFFSi~aQR~Alaiaa  319 (1051)
T KOG0168|consen  244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYL-DFFSIHAQRVALAIAA  319 (1051)
T ss_pred             cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            5567788999999999988876 89999999999999999754   34678899999999999 6778899999999999


Q ss_pred             hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC--CchHHHHHHHhCcHHHHHHhcCCCC----hh
Q 037142           86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG--KNDEIQAVIEAGVCPRLVKLLGHPS----QS  159 (383)
Q Consensus        86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~i~~l~~~L~~~~----~~  159 (383)
                      |+|..-+......+...+|.|..+++..|....+.++-++..++.++  .++..+.++.+|++....+++.-..    ..
T Consensus       320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~  399 (1051)
T KOG0168|consen  320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG  399 (1051)
T ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence            99998777777888999999999999999999999999999998764  3466677788888887777765321    11


Q ss_pred             hHHHHHHHHhhhhcCCCccc------------------------------------------------------------
Q 037142          160 VLTQALHTVGNIARGDYSQT------------------------------------------------------------  179 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~------------------------------------------------------------  179 (383)
                      +..-..+.+..++.+.+...                                                            
T Consensus       400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~  479 (1051)
T KOG0168|consen  400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAV  479 (1051)
T ss_pred             chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeeh
Confidence            11111222222222111100                                                            


Q ss_pred             -----------------------------------------------------------cceec----------CCChHH
Q 037142          180 -----------------------------------------------------------LYIIN----------CGALPY  190 (383)
Q Consensus       180 -----------------------------------------------------------~~l~~----------~~~i~~  190 (383)
                                                                                 ..++.          ..++++
T Consensus       480 ~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpV  559 (1051)
T KOG0168|consen  480 DCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPV  559 (1051)
T ss_pred             hhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHH
Confidence                                                                       00000          013566


Q ss_pred             HHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037142          191 LLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL  268 (383)
Q Consensus       191 l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l  268 (383)
                      |+++..+.-++.||+.++.+|..++. .+.+.+..++ +.++-..+..++.+.+..+-.-|..+.--++..-..-....+
T Consensus       560 LveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F  639 (1051)
T KOG0168|consen  560 LVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF  639 (1051)
T ss_pred             HHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH
Confidence            67777666689999999999999875 4557777777 567777888888888888777776666666655444455666


Q ss_pred             HHcCChHHHHhhcC
Q 037142          269 EREGCIKPLCDLLL  282 (383)
Q Consensus       269 ~~~~~i~~L~~ll~  282 (383)
                      ...|++..+-++..
T Consensus       640 ~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  640 RREGVFHAVKQLSV  653 (1051)
T ss_pred             hhhhHHHHHHHHhc
Confidence            67788877777765

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.19  E-value=9.6e-10  Score=94.34  Aligned_cols=240  Identities=16%  Similarity=0.090  Sum_probs=183.8

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      .-+.++.+|...+.-+...+.+++..++...........-.=....|-..++++.+......++++|..+...++.+...
T Consensus       115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~  194 (442)
T KOG2759|consen  115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF  194 (442)
T ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence            46778999999999999999999999885432211110000012334555655567888889999999999988777666


Q ss_pred             hhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142           98 QVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        98 ~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~  174 (383)
                      ...+++..++..+.  ..+..++.+.+.|++-|+-+  +...+.+...+.++.+..++++ ...+|..-++.+++|++..
T Consensus       195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67788888888773  33689999999999999987  5555666666899999999987 5678888899999999876


Q ss_pred             CCcc------ccceecC---------------------------------------------------------------
Q 037142          175 DYSQ------TLYIINC---------------------------------------------------------------  185 (383)
Q Consensus       175 ~~~~------~~~l~~~---------------------------------------------------------------  185 (383)
                      .++.      ...++..                                                               
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            6421      1111111                                                               


Q ss_pred             -------------CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH
Q 037142          186 -------------GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA  252 (383)
Q Consensus       186 -------------~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  252 (383)
                                   .+++.|+.+|.++.+|.+...||.-++..+...|+.+..+.+.|+=..+++++++++++||.+|..+
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla  432 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA  432 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence                         2366777888777568888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 037142          253 ISNATFG  259 (383)
Q Consensus       253 l~~l~~~  259 (383)
                      +..+..+
T Consensus       433 vQ~lm~~  439 (442)
T KOG2759|consen  433 VQKLMVH  439 (442)
T ss_pred             HHHHHhh
Confidence            9877643

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=3e-10  Score=99.96  Aligned_cols=306  Identities=14%  Similarity=0.113  Sum_probs=211.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCC
Q 037142           36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSND  114 (383)
Q Consensus        36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~  114 (383)
                      .++.+|..++..-...|..+.+..+.+.|+++| +.|+..+...+...++|+...- +-.......+++..+.+++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344555566665567777888889999999999 7777778888888888888765 33345556899999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC---ccccceecCC----
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY---SQTLYIINCG----  186 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~~----  186 (383)
                      ..++.+..|+++.+..+ +....+ .....-++..++.+..+++..+++.++..|+|+..+..   +....+++..    
T Consensus       487 daLqans~wvlrHlmyn-cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         487 DALQANSEWVLRHLMYN-CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhcchhhhhhhhhc-CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            99999999999999877 443322 23344467999999999999999999999999986433   3444444432    


Q ss_pred             ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcC--c---------hhHHHHHHHHHH
Q 037142          187 ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNA--V---------FYIKKEAAWAIS  254 (383)
Q Consensus       187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~--~---------~~v~~~a~~~l~  254 (383)
                      +.+.+.+.+... +|-.....++.+.++++.++.....++ +..++..+..+|...  .         ..+-.--..+..
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            445566666677 777888889999999998877666666 566777777766421  1         111111223333


Q ss_pred             HhcCCCCHHHHHHHHHcCCh--HHHHhhcC---CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccH
Q 037142          255 NATFGGTHEQIKYLEREGCI--KPLCDLLL---CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGL  329 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i--~~L~~ll~---~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  329 (383)
                      ++..+.  +....    +..  |++=..=+   .++.++-....|.+.|+.......+.    ..+....++.+.+.|.-
T Consensus       645 ~l~e~~--d~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~v----tratveR~~iL~~~G~~  714 (743)
T COG5369         645 NLSENS--DKFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEV----TRATVERIQILCANGIR  714 (743)
T ss_pred             cccccc--ccccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCcc----chhhHHHHHHHHHccHH
Confidence            443321  11111    111  22221111   23446777788888776554333322    23455778899999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          330 EKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       330 ~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      +-++.++.+.+..|++++-.+|..+
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=4.1e-08  Score=90.59  Aligned_cols=333  Identities=16%  Similarity=0.165  Sum_probs=240.1

Q ss_pred             ChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCC---
Q 037142           18 AVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKP---   92 (383)
Q Consensus        18 ~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~---   92 (383)
                      .|+.|+.-+.+ .-.+=|..|++.|..++.   ++|..+...| .+++++.|+.+ .|+++...++.++.++..+..   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            47778777765 456779999999999984   7888887666 78999999755 489999999999999987662   


Q ss_pred             ---CCC------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHHHHHhcCCC
Q 037142           93 ---RPI------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPRLVKLLGHP  156 (383)
Q Consensus        93 ---~~~------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~l~~~L~~~  156 (383)
                         ...            +....+.+..++..+...|..+|..++..+..+....+.+....+. ...++..++.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence               111            0112578888999999999999999999999998873444444433 345789999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142          157 SQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDAGLIGP  233 (383)
Q Consensus       157 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~  233 (383)
                      ..-++..++..|..++..++...+.+.=.+++..|.+++....   ..-|...|+..+.|+...+..+...+.+.+.+|.
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            8899999999999999888866665555688999999997532   3468889999999999988788888889999999


Q ss_pred             HHHHhhc---Cch--------hH--HHHHHHHHHHhcCCCC-----HHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHH
Q 037142          234 LVNLLQN---AVF--------YI--KKEAAWAISNATFGGT-----HEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCL  293 (383)
Q Consensus       234 L~~ll~~---~~~--------~v--~~~a~~~l~~l~~~~~-----~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al  293 (383)
                      |..++.-   ++.        ++  ...+..++..+...++     ....+.+.+.+++..|+.++-++  ..+++..++
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi  338 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI  338 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence            9988863   221        11  1345556666665442     22334566789999999988776  458888899


Q ss_pred             HHHHHHHHhchhcccCcCC---CCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 037142          294 KALENILKVGEAEKNTDTD---IGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       294 ~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      -++.++++.+...|..|.+   .+..++.-      ..+-.+..+.++ .....+-.+...+..|+.+.++
T Consensus       339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~------sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  339 ITVAEVVRGNARNQDEFADVTAPSIPNPRP------SIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             HHHHHHHHhchHHHHHHhhccCCCCCCCcc------chhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            9999999887776654331   01111000      011122334333 3445666667777777766553

>PTZ00429 beta-adaptin; Provisional

Probab=99.15  E-value=3.4e-08  Score=94.55  Aligned_cols=219  Identities=17%  Similarity=0.117  Sum_probs=152.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +++.|.+=+.++++.+|-.|++.++.+-.  ++..+.+     ++.+.+.+ .+.++.+|+.|+.++.++....|.  ..
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe--lv  175 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ--LF  175 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc--cc
Confidence            46777888888999999999999998763  3433333     46677888 688999999999999999876543  23


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ...+.++.+.+++.+.++.+..+|+.+|..+... .+.....  ..+.+..++..+.+-++..+...+.+|......++.
T Consensus       176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~  252 (746)
T PTZ00429        176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY-GSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE  252 (746)
T ss_pred             cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh-CchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH
Confidence            3457888999999999999999999999999876 4433332  234567788888777788888888888654322211


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                      .   .  ..++..+.+.+++. ++.|...|++++.++.... ++...... ..+-+.++.+ .++++++|.-+...|.-+
T Consensus       253 e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i  324 (746)
T PTZ00429        253 S---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHAL  324 (746)
T ss_pred             H---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHH
Confidence            1   1  25677888888898 9999999999999887542 23222221 1122344444 334556666665555444


Q ss_pred             c
Q 037142          257 T  257 (383)
Q Consensus       257 ~  257 (383)
                      +
T Consensus       325 ~  325 (746)
T PTZ00429        325 L  325 (746)
T ss_pred             H
Confidence            4

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.10  E-value=1.1e-08  Score=89.52  Aligned_cols=221  Identities=18%  Similarity=0.226  Sum_probs=162.3

Q ss_pred             cCCHHHHHHHHHHHHHhccCCCchHHHHHHH------hCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC
Q 037142          112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIE------AGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC  185 (383)
Q Consensus       112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  185 (383)
                      +.+.++.++++..+..+... .+...+.+..      ...+..++.++.++|..+...++..+..+....+....... .
T Consensus        68 ~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~  145 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K  145 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H
T ss_pred             cCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H
Confidence            46889999999999999987 5555555544      12578888899999999999999999999877664433211 2


Q ss_pred             CChHHHHHhhcc----ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh------h-cCchhHHHHHHHHHH
Q 037142          186 GALPYLLGLLID----NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL------Q-NAVFYIKKEAAWAIS  254 (383)
Q Consensus       186 ~~i~~l~~ll~~----~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll------~-~~~~~v~~~a~~~l~  254 (383)
                      +.++.++..+.+    + +..++..++.+++++.. .+..+..+.+.++++.+.+++      . ....++..+++.++.
T Consensus       146 ~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW  223 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW  223 (312)
T ss_dssp             HHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence            456666666654    4 56778899999999975 458899999999999999999      2 247889999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE  333 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~  333 (383)
                      -++..  ++....+.+.++++.|.++++. ...++...++.++.|++.....            .+...+..+|+.+.+.
T Consensus       224 lLSF~--~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~------------~~~~~mv~~~~l~~l~  289 (312)
T PF03224_consen  224 LLSFE--PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK------------SNIELMVLCGLLKTLQ  289 (312)
T ss_dssp             HHTTS--HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST------------THHHHHHHH-HHHHHH
T ss_pred             HHhcC--HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH------------HHHHHHHHccHHHHHH
Confidence            99986  7888888888899999999984 5678999999999999975442            2566677899999999


Q ss_pred             HHhcC--CCHHHHHHHHHH
Q 037142          334 NLQRH--DNYEIHEKSAKI  350 (383)
Q Consensus       334 ~l~~~--~~~~v~~~a~~~  350 (383)
                      .|...  .|+++.+--..+
T Consensus       290 ~L~~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  290 NLSERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             HHHSS--SSHHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHH
Confidence            88765  577776544433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=2.4e-07  Score=85.75  Aligned_cols=297  Identities=15%  Similarity=0.160  Sum_probs=212.8

Q ss_pred             hHHHHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCh----------------HHHHHHH-hcCChHHHHHH
Q 037142            7 LEDKKAVVDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESP----------------RFRDLVL-GEAALIPLLTQ   67 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~----------------~~~~~~~-~~g~i~~L~~~   67 (383)
                      .++|..+.-+ +++.|++.|..  .|+++...++.++.++...++                ...+.++ ..+.|..++..
T Consensus        52 rkYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~  130 (970)
T KOG0946|consen   52 RKYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS  130 (970)
T ss_pred             HHHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHH
Confidence            3455555544 57888888875  889999999999999875431                1222333 45778888999


Q ss_pred             hcCCCChhHHHHHHHHHHhhcCCCCCCChh---hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC
Q 037142           68 LNNHENLSMKRIATWTLSNLCGGKPRPIFD---QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG  144 (383)
Q Consensus        68 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  144 (383)
                      + ...|-.+|..++..+.++.+..|.....   ....++..+..++.+....+|..++..|..+.+. ++.-.+.+.-..
T Consensus       131 ~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~-n~~IQKlVAFEN  208 (970)
T KOG0946|consen  131 L-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD-NSSIQKLVAFEN  208 (970)
T ss_pred             H-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc-CchHHHHHHHHH
Confidence            8 6778999999999999998876544222   2277899999999999999999999999999998 443333444456


Q ss_pred             cHHHHHHhcCC----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc--ch--------h--HHHHHH
Q 037142          145 VCPRLVKLLGH----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH--KT--------S--IKNYAC  208 (383)
Q Consensus       145 ~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~--~~--------~--~~~~a~  208 (383)
                      ++..|+.++..    +..-|...|+..|.||..++..+.+.+.+.+.++.|..+|....  +.        +  -...++
T Consensus       209 aFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~L  288 (970)
T KOG0946|consen  209 AFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEAL  288 (970)
T ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHH
Confidence            89999999976    23467889999999999998888888889999999997775321  21        1  123466


Q ss_pred             HHHHHHhcC-CH-----HHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCCCHHHHHHHHHcC--------
Q 037142          209 WIISNITAG-NR-----EQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGGTHEQIKYLEREG--------  272 (383)
Q Consensus       209 ~~l~nl~~~-~~-----~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~--------  272 (383)
                      .+++.++.. +.     .....+...+++..|..++.++  ..+|+.++..+++++.+.+ ......+.+..        
T Consensus       289 qivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr  367 (970)
T KOG0946|consen  289 QIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPR  367 (970)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCc
Confidence            666666642 21     2223455788999999998776  6789999999999999874 34444444321        


Q ss_pred             --ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcc
Q 037142          273 --CIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEK  307 (383)
Q Consensus       273 --~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~  307 (383)
                        ++-.++.+..+. .+..|..+++++..++-....-+
T Consensus       368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq  405 (970)
T KOG0946|consen  368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ  405 (970)
T ss_pred             cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence              122244444444 56788888899888876555433

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=5.2e-08  Score=89.65  Aligned_cols=281  Identities=14%  Similarity=0.111  Sum_probs=185.6

Q ss_pred             ChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           18 AVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL-IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        18 ~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i-~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      ++..+++-...  ++..+|..|..+|.|-......+-..=.+.+++ +..++.- ++++.+++..|+.+|..+..-....
T Consensus       173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~~  251 (859)
T KOG1241|consen  173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYEF  251 (859)
T ss_pred             HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433  667888888888887552111111111123332 3334444 7889999999999999988654222


Q ss_pred             C-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH---HHHHH---------------hCcHHHHHHhcCC
Q 037142           95 I-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI---QAVIE---------------AGVCPRLVKLLGH  155 (383)
Q Consensus        95 ~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~---------------~~~i~~l~~~L~~  155 (383)
                      - .-....++..-+.-++++++++..+++..-+++|.. .-+..   ....+               .+++|.|+++|.+
T Consensus       252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeE-EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k  330 (859)
T KOG1241|consen  252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE-EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK  330 (859)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence            1 112244666666777889999999999888888854 11100   01111               1467788888843


Q ss_pred             -------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142          156 -------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA  228 (383)
Q Consensus       156 -------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~  228 (383)
                             ++++...+|-.||.-++....+.   ++. .+++.+-.-++++ +..-|..+..+++.+..+....+..-+-.
T Consensus       331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~  405 (859)
T KOG1241|consen  331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVI  405 (859)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHh
Confidence                   45677778888888777554432   222 3444444556677 89999999999999999887777777788


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142          229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      +.+|.++.++.+++..+|..+.|+++.++................++.++.-+ ...|.+-.+++|++.++++.....
T Consensus       406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999774322222222233455555555 356788999999999999765543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=7.6e-08  Score=89.13  Aligned_cols=277  Identities=15%  Similarity=0.181  Sum_probs=189.1

Q ss_pred             HHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142           23 VKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC  102 (383)
Q Consensus        23 ~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  102 (383)
                      .+=|++.+.-++-.|+.+|++++.  ++...     ...|.+-+++ ++.++.+++.|+.+...+.+..|    ...+.+
T Consensus       113 knDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll-~~~~~~irKKA~Lca~r~irK~P----~l~e~f  180 (866)
T KOG1062|consen  113 KNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLL-QHRDPYIRKKAALCAVRFIRKVP----DLVEHF  180 (866)
T ss_pred             HhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCc----hHHHHh
Confidence            333456777888899999999985  34333     3357778888 67899999999999999998765    345678


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------------CChhhHHHHHHH
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---------------PSQSVLTQALHT  167 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---------------~~~~v~~~a~~~  167 (383)
                      ++...+++.+.+..+....+..+..+|.. .++....+.+  +++.++..|+.               ++|-++..+++.
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl  257 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL  257 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence            88888899988888888888888888887 6666666655  56666666641               577888888888


Q ss_pred             HhhhhcCCCccccceec--------------CC---ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---
Q 037142          168 VGNIARGDYSQTLYIIN--------------CG---ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---  227 (383)
Q Consensus       168 L~~l~~~~~~~~~~l~~--------------~~---~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---  227 (383)
                      |+.|-.++++..+.+-+              .|   ..+.+..++.=..+..+|.-|+.+|+.+..+.+.+..++.=   
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L  337 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNML  337 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhH
Confidence            88887776654321110              00   01111111111114566666666666665554433332211   


Q ss_pred             -------cCC----hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142          228 -------AGL----IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL  296 (383)
Q Consensus       228 -------~~~----l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l  296 (383)
                             ..+    =..+++++++++..+|+.|......+...   .++..     .++-|++.|...+++.+..+...+
T Consensus       338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~---~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I  409 (866)
T KOG1062|consen  338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE---SNVRV-----MVKELLEFLESSDEDFKADIASKI  409 (866)
T ss_pred             HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc---ccHHH-----HHHHHHHHHHhccHHHHHHHHHHH
Confidence                   111    12578899999999999999999888854   44555     366788888888999999888888


Q ss_pred             HHHHHhchhcccCcCCCCcccHHHHHHHHhc
Q 037142          297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAK  327 (383)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  327 (383)
                      ..+++....++     .+..+.+.++|...|
T Consensus       410 ~~laEkfaP~k-----~W~idtml~Vl~~aG  435 (866)
T KOG1062|consen  410 AELAEKFAPDK-----RWHIDTMLKVLKTAG  435 (866)
T ss_pred             HHHHHhcCCcc-----hhHHHHHHHHHHhcc
Confidence            88887665543     455677777777776

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.8e-07  Score=85.64  Aligned_cols=223  Identities=18%  Similarity=0.216  Sum_probs=174.3

Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ..+++.+-+..++.+..+-+|..|+..++.++.. .++..+.     .+|.|.+-|.++|+.|+.+|...++.|+..++.
T Consensus       141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk-YPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPk  214 (877)
T KOG1059|consen  141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK-YPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ  214 (877)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence            3456778888999999999999999999999987 4544443     579999999999999999999999999988885


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-chhHHHHHHHHHH--
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-VFYIKKEAAWAIS--  254 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~--  254 (383)
                      ..-     .+.|.+.+++.+..+..+....+..+++|+.-.|....     .+++++-+++++. -..+-.+++.++.  
T Consensus       215 nyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~  284 (877)
T KOG1059|consen  215 NYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAV  284 (877)
T ss_pred             ccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence            433     45788999998776899999999999999987766554     4677899999875 4556666666653  


Q ss_pred             HhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHH
Q 037142          255 NATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKI  332 (383)
Q Consensus       255 ~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L  332 (383)
                      ++....  ...-++.     ++..|--++.+.|+.++..++-++..++...++.                +...  .+.+
T Consensus       285 s~s~g~~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----------------Vqa~--kdlI  341 (877)
T KOG1059|consen  285 SMSSGMSDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----------------VQAH--KDLI  341 (877)
T ss_pred             hhccCCCCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----------------HHHh--HHHH
Confidence            333332  2223333     5778888899999999999999999999765542                1111  3567


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          333 ENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       333 ~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .+++.+.++.|+-+|++++..+...++
T Consensus       342 lrcL~DkD~SIRlrALdLl~gmVskkN  368 (877)
T KOG1059|consen  342 LRCLDDKDESIRLRALDLLYGMVSKKN  368 (877)
T ss_pred             HHHhccCCchhHHHHHHHHHHHhhhhh
Confidence            789999999999999999998887776

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=7.7e-08  Score=88.54  Aligned_cols=285  Identities=17%  Similarity=0.244  Sum_probs=189.2

Q ss_pred             HhCCChHHHHHh----hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC
Q 037142           14 VDHGAVPIFVKL----LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG   89 (383)
Q Consensus        14 ~~~g~i~~L~~l----L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~   89 (383)
                      +...+++..+.+    ++++|+.-++.|+.+++.+..+....+..-+..++++.++.++ .++...++..+.|+++.++.
T Consensus       357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d  435 (859)
T KOG1241|consen  357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIAD  435 (859)
T ss_pred             hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHh
Confidence            334555555444    5568999999999999999987777776666788899999999 58888889999999999998


Q ss_pred             CCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCch----H-----HHHHHHhCcHHHHHHhcCC---
Q 037142           90 GKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND----E-----IQAVIEAGVCPRLVKLLGH---  155 (383)
Q Consensus        90 ~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~----~-----~~~~~~~~~i~~l~~~L~~---  155 (383)
                      ..+..  ......+.++.++.-+. +.|.+..++||++.+|+.. ..+    +     ...+++. ++..|++.-..   
T Consensus       436 ~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea-~~eA~~s~~qt~~~t~~y~~-ii~~Ll~~tdr~dg  512 (859)
T KOG1241|consen  436 FLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA-AYEAAVSNGQTDPATPFYEA-IIGSLLKVTDRADG  512 (859)
T ss_pred             hchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH-HHHhccCCCCCCccchhHHH-HHHHHHhhcccccc
Confidence            87533  22333455555555444 4578999999999999954 111    1     1112221 33333333332   


Q ss_pred             CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH---------hhccc---cchhHHHHHHHHHHHHhcCCHHHHH
Q 037142          156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG---------LLIDN---HKTSIKNYACWIISNITAGNREQIQ  223 (383)
Q Consensus       156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~---------ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~  223 (383)
                      .+.+.|..+..+|..+..+.++..-..+. ++...++.         .++..   +-..++..-+.+|..+.+..+..+.
T Consensus       513 nqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~  591 (859)
T KOG1241|consen  513 NQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIR  591 (859)
T ss_pred             chhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccch
Confidence            45789999999999999877654332221 22222222         22111   0234556666777766653322222


Q ss_pred             HHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc-CCCCHHHHHHHHHHHHHHHH
Q 037142          224 AVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL-LCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       224 ~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~~l~~l~~  301 (383)
                      ... ..++..+++++.+ .+..+..+|..+++.++..-+....+++-.  +.|.|..-| ...+..|...+......+++
T Consensus       592 ~~~-d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~~e~qVc~~aVglVgdl~r  668 (859)
T KOG1241|consen  592 EVS-DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSNFQEYQVCAAAVGLVGDLAR  668 (859)
T ss_pred             hHH-HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            222 2356677778877 466788999999999988766677777655  788888888 45678899999999888887


Q ss_pred             hchhc
Q 037142          302 VGEAE  306 (383)
Q Consensus       302 ~~~~~  306 (383)
                      .-+.+
T Consensus       669 aL~~~  673 (859)
T KOG1241|consen  669 ALEDD  673 (859)
T ss_pred             HHHhh
Confidence            65543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.90  E-value=1.9e-07  Score=81.59  Aligned_cols=274  Identities=15%  Similarity=0.127  Sum_probs=190.5

Q ss_pred             HHHHHHhCCChHHHHHhhCCCCh--HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            9 DKKAVVDHGAVPIFVKLLASPSD--DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         9 ~~~~~~~~g~i~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      .+..+...|.+..|++++.+++.  .++.+|.+.|..+..  .++++.+.+.| +..++.+-+....++..+..+.+|.+
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~  248 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH  248 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence            45667778999999999998664  559999999998874  47888888877 56666666556678999999999999


Q ss_pred             hcCCCCC-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142           87 LCGGKPR-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL  165 (383)
Q Consensus        87 l~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~  165 (383)
                      +..++.. .......+++..++.-.+..++.+.++++.+|.|++.+......+.+++..+.+.|+.+-.+.|+-.+..||
T Consensus       249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            9999843 445556899999999999999999999999999999763455666788887888888888888888999999


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI  245 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  245 (383)
                      -+.+.++.+.+.. ..+.+.|.+..+-.++.+- ++.....   --...+.+.        ....++.|+.++++...+.
T Consensus       329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~-DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASL-DPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEA  395 (832)
T ss_pred             HHHhhhhhhhhhh-HHHhhccchhhhhhhhhcc-Ccchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhh
Confidence            9999998765532 3355566665555555544 3321111   111122221        1234677888888766665


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142          246 KKEAAWAISNATFGGTHEQ-IKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN  298 (383)
Q Consensus       246 ~~~a~~~l~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~  298 (383)
                      +--+++-++.=+...+... .+.+-+-|.++.|-++..+++.---.-|-.+|.-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv  449 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV  449 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            5555554444333222222 2333456889999998887665433445555543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.9e-06  Score=71.54  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=180.1

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI  141 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  141 (383)
                      ..++.++ .++++.++..|+..+..+.......-.......++.+.+++...++  .+.++.++.|++..  ..-.+.+.
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~--~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK--EELRKKLL   80 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh--HHHHHHHH
Confidence            4578888 7888999999999998888772222223336688889999998777  78899999999976  44445555


Q ss_pred             HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccccee------cCCChHHHHHhhccccch-hHHHHHHHHHHHH
Q 037142          142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYII------NCGALPYLLGLLIDNHKT-SIKNYACWIISNI  214 (383)
Q Consensus       142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~------~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl  214 (383)
                      .. ++..++..+.++.......++..+.|++...+.....+.      +.|.++....+...+.+. .-......++.|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            55 788888888888777888899999999976654322211      134555555555443121 2234456677788


Q ss_pred             hcCCHHHHHHHHhcCCh--HHHHHHhhcCchhHHHH-HHHHHHHhcCCCCHHHHHHHHH--cCChHHH------------
Q 037142          215 TAGNREQIQAVIDAGLI--GPLVNLLQNAVFYIKKE-AAWAISNATFGGTHEQIKYLER--EGCIKPL------------  277 (383)
Q Consensus       215 ~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~v~~~-a~~~l~~l~~~~~~~~~~~l~~--~~~i~~L------------  277 (383)
                      +... ..+..+.+...+  ..+..+ .+.+..+|+. .+.+|-|+|...  .....++.  .++++.+            
T Consensus       160 s~~~-~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQFE-AGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hhhh-hhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            6654 556565544422  222222 2345566654 477788877552  22222222  1222222            


Q ss_pred             ---------HhhcC-----CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH-hcCCCHH
Q 037142          278 ---------CDLLL-----CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL-QRHDNYE  342 (383)
Q Consensus       278 ---------~~ll~-----~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~~~~  342 (383)
                               ++.+.     .+++.+++.-+.+|..++..              ..-++.++.-|+.+.+.++ ...++++
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCcHH
Confidence                     13332     34678999999999988863              3356779999999999888 5568899


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 037142          343 IHEKSAKILETYWCGRV  359 (383)
Q Consensus       343 v~~~a~~~l~~~~~~~~  359 (383)
                      +++.|..+.+-+..++.
T Consensus       302 ~~~ace~vvq~Lv~~e~  318 (353)
T KOG2973|consen  302 IREACEQVVQMLVRLEP  318 (353)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999998888877443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.87  E-value=2.2e-07  Score=81.19  Aligned_cols=246  Identities=11%  Similarity=0.118  Sum_probs=177.2

Q ss_pred             hhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142           98 QVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~  174 (383)
                      ...+++..|++++..++  ..++..+...|..+...   ++...+...| ...++.+-+. +.++.....+..|.++-.+
T Consensus       177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            34678899999999776  45688999999888754   5666666655 4566665554 5567888899999999999


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      +++..+.++..|+++.++...... ++.+.+.+.-+|+|++. +.......+++..+-+.|+.+..+.+.-.|..||.++
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence            998999999999999999999988 89999999999999986 4456777788888888999998888999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcC---ChHHHHhhcCCC--------------------------CHHHHHHHHHHHHHHHHhch
Q 037142          254 SNATFGGTHEQIKYLEREG---CIKPLCDLLLCP--------------------------DPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~--------------------------~~~v~~~al~~l~~l~~~~~  304 (383)
                      +.++.+  .+.-..+...|   ++++++..++-.                          +...-.+++.++.-.++...
T Consensus       332 ~vlat~--KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI  409 (832)
T KOG3678|consen  332 AVLATN--KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI  409 (832)
T ss_pred             hhhhhh--hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence            999976  34434333344   334444433210                          00111224444444444332


Q ss_pred             hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      +.         ...-.+.|.+.|.++.|.++..+++.--...|..+|. ..+++-.
T Consensus       410 Ks---------~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt-viGEEVP  455 (832)
T KOG3678|consen  410 KS---------LQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT-VIGEEVP  455 (832)
T ss_pred             HH---------hccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HhccccC
Confidence            21         1113567899999999999999998877777777776 3344333

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=5e-07  Score=83.89  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=147.2

Q ss_pred             CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142           70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL  149 (383)
Q Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l  149 (383)
                      ++.+.-++..|+.+|++++..      +....+.|-+.+++++.++-+++.|+.|...+.+. .++..+.     +++..
T Consensus       117 ~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~-----f~~~~  184 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEH-----FVIAF  184 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHH-----hhHHH
Confidence            456778888999999999875      45577889999999999999999999999999987 5544443     57788


Q ss_pred             HHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHh
Q 037142          150 VKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNIT  215 (383)
Q Consensus       150 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~  215 (383)
                      ..+|.+.+..|....+..+..+|..+++....+-+  .++-++..|++              -.+|.++...++.|+-+.
T Consensus       185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence            88999999999999999999999877655554443  45555555532              117889999999999998


Q ss_pred             cCCHHHHHHHHh------------cC-C----hHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC-----
Q 037142          216 AGNREQIQAVID------------AG-L----IGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREG-----  272 (383)
Q Consensus       216 ~~~~~~~~~~~~------------~~-~----l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~-----  272 (383)
                      .++++..+.+-+            .+ +    .+.+..++. .++..+|..|+-+|+.+..+.+ .+++++.=+.     
T Consensus       263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d-~NirYvaLn~L~r~V  341 (866)
T KOG1062|consen  263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD-NNIRYVALNMLLRVV  341 (866)
T ss_pred             CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc-cceeeeehhhHHhhh
Confidence            876554443321            00 1    112222222 2456677777777777766532 3333221000     


Q ss_pred             ---------ChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          273 ---------CIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       273 ---------~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                               =-..++++++++|..++..|+..+..++.
T Consensus       342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn  379 (866)
T KOG1062|consen  342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN  379 (866)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence                     12346667777777777777777776664

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.84  E-value=5.2e-07  Score=83.08  Aligned_cols=243  Identities=14%  Similarity=0.067  Sum_probs=161.1

Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      .....++..++..|+++.+.++.+++..+..++.-... ..-+.+...|  -.|.+.|..+.+++.-..+.++..++..-
T Consensus       795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvi  872 (1172)
T KOG0213|consen  795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVI  872 (1172)
T ss_pred             cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            34456777888899999999999999999888854101 1111222223  35788899999999999999988887433


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      .-....---.+++|.|..+|++. +..++.+++..++.++...++..-.--=..+--.|+++|...+..+|+.|..+++.
T Consensus       873 gm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  873 GMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY  951 (1172)
T ss_pred             cccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            21111112248899999999999 99999999999999997665421100001123346777788899999999999998


Q ss_pred             hcCCCCHHH-HHHHHH-----------------------c---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhccc
Q 037142          256 ATFGGTHEQ-IKYLER-----------------------E---GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKN  308 (383)
Q Consensus       256 l~~~~~~~~-~~~l~~-----------------------~---~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~  308 (383)
                      ++...++.. ...+++                       +   .++|.|++-...++..||.-.+.+++.++++.....+
T Consensus       952 IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  952 IAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             HHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence            876544332 222211                       1   2566666666677888999999999999987665543


Q ss_pred             CcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          309 TDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      .+        +.      ...+.|++-+-+.+.--++.|..++..+.-
T Consensus      1032 dY--------iy------av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1032 DY--------IY------AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             hH--------HH------HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            21        11      123555555555555556666666655543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.8e-06  Score=78.38  Aligned_cols=316  Identities=16%  Similarity=0.115  Sum_probs=198.6

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +++.|..-++.+++.+|.....+|..+........    ...+.+.+.+++ +..+..-+..+.+.++.+..+. .....
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll-~~~~~~~~~~aa~~~ag~v~g~-~i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELL-TSTKIAERAGAAYGLAGLVNGL-GIESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHh-ccccHHHHhhhhHHHHHHHcCc-HHhhh
Confidence            46677777778889999999888876653211110    112356677888 4677788888999999888775 22334


Q ss_pred             hhhchhHHHHHhhccCCHHHHHH-HHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSN-ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      ...+++..+.+.+.+......+. +..+....+..-....-..+.  .++|.++....+..+.++.++..+...+...-+
T Consensus       171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            44778888888888776544443 333333322220111111122  256777888888888999998888877765433


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                      ...-    .-+++.++.-+... ....+..++..++.++...+..... .-..++|.+.+.|.+..+++|+.+..++.++
T Consensus       249 ~~aV----K~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  249 AYAV----KLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKF  322 (569)
T ss_pred             cchh----hHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            2111    12455555555555 6788899999999988776555443 3467999999999999999999999999998


Q ss_pred             cCCCCHHHHHHHHHcC----------------------------------ChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          257 TFGGTHEQIKYLEREG----------------------------------CIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       257 ~~~~~~~~~~~l~~~~----------------------------------~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      +...+...++.++...                                  ++|.|.+-+...+..++..++..+.|++.-
T Consensus       323 ~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L  402 (569)
T KOG1242|consen  323 GSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL  402 (569)
T ss_pred             HHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence            8765444455421100                                  222233333334445556666666666654


Q ss_pred             chhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          303 GEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      -+..+.       ..+|...+     ++.+......+.++++..+..+|........
T Consensus       403 veDp~~-------lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  403 VEDPKD-------LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             hcCHHH-------HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            422211       12222222     5777777788899999988888855544443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.3e-06  Score=80.29  Aligned_cols=219  Identities=16%  Similarity=0.149  Sum_probs=168.3

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      -+.++.+| ++..+-++..|+.++..++...|    ......+|.|..-|.++|+.++..|..+++.|++. ++.++-. 
T Consensus       146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK-nPknyL~-  218 (877)
T KOG1059|consen  146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK-NPQNYLQ-  218 (877)
T ss_pred             HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh-CCccccc-
Confidence            45677888 67788999999999999987654    34577899999999999999999999999999998 6555443 


Q ss_pred             HHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHH--HHHhcC
Q 037142          141 IEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWII--SNITAG  217 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l--~nl~~~  217 (383)
                          +.|.+.++|.+ +|..+....+..+++|+.-.+..     ...+++++..++.++.-..+..+++.++  +++..+
T Consensus       219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence                46888888866 67789999999999998666632     2367889999998875567777777665  344444


Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                      .++....+  .-.+..|-.++.+.++.+|.-++.+++.++... +...+.     --..++.+|.+.|+.++..|+..+.
T Consensus       290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKAVQA-----HKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence            32222221  114667788888999999999999999998653 333333     3567889999999999999999999


Q ss_pred             HHHHhc
Q 037142          298 NILKVG  303 (383)
Q Consensus       298 ~l~~~~  303 (383)
                      -++...
T Consensus       362 gmVskk  367 (877)
T KOG1059|consen  362 GMVSKK  367 (877)
T ss_pred             HHhhhh
Confidence            888643

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=6.7e-07  Score=82.95  Aligned_cols=263  Identities=19%  Similarity=0.152  Sum_probs=192.8

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      .++-++++....|-+++..+---+.+.+...|....     +++..++.-. .++++.++..|++..+.+-.+      .
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~------~  117 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDC-EDPNPLIRALALRTMGCLRVD------K  117 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccC-CCCCHHHHHHHhhceeeEeeh------H
Confidence            456666667777778888887888888876655332     3455566665 677899999988887776654      3


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....++..+.++++++++.++..+..+..++-..    ..+.+.+.|+++.|..++.++++.|..+|+.+|..+....++
T Consensus       118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~----~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI----DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC----ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence            5567888999999999999999999999988865    346667789999999999999999999999999999877664


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      ..-..+....+..++..+... ++.-+...+.++.+....++...+.     ++..+...+.+.+..+...+..++.++.
T Consensus       194 ~~~~~l~~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  194 VNLLELNPQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLV  267 (734)
T ss_pred             CCcccccHHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHH
Confidence            222233334556666666555 6666777777777766655433333     4557777888888888888888888887


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      ...  ..........+-++|+.++.... +++..++.=+.-++...+.
T Consensus       268 ~~~--~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~  312 (734)
T KOG1061|consen  268 KYL--KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE  312 (734)
T ss_pred             HHH--HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence            652  23444445568888999888777 8888888777777766553

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.71  E-value=1e-06  Score=81.27  Aligned_cols=263  Identities=16%  Similarity=0.103  Sum_probs=171.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHH--HHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRF--RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRP   94 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~   94 (383)
                      ++...+..|++.++.+|.+|+..++.++.--..+  -+.+-..|+  .|...| ....+++.-..+.++..++... ...
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence            3556667788899999999999999887321111  122333453  367777 5667788777777666665433 222


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA-GVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                      ..--+.+++|.|...|++....++++++..++.++.. .++.+.. .+. .+-=.|+++|+..+.+++.++..+++.++.
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3334688999999999999999999999999999987 4432211 110 122356788888899999999999999974


Q ss_pred             CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      .-.       -..++..|+.-|+.. +...|.....+++-.+..+..       ..++|.|+.=...++..|+.-...++
T Consensus       955 aIG-------PqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  955 AIG-------PQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             hcC-------HHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHH
Confidence            321       113455555555444 333333333333333322211       23566666666678888999888888


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      +.+-.........++..  +.|.|-+.|.+.|.--+..|..++..+.-.
T Consensus      1020 sf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            88876644444555544  788888888888887777777777666644

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.2e-05  Score=73.27  Aligned_cols=277  Identities=17%  Similarity=0.144  Sum_probs=183.0

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHH-HHHHHHHhhcCCCCCCCh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR-IATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~-~a~~~L~~l~~~~~~~~~   96 (383)
                      ..+.+.++++..+..-+..+.+.+..+..+.  ....+.+.+++..+...+. +.+....+ .++.+....+..-.....
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~-dk~~~~~re~~~~a~~~~~~~Lg~~~E  211 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAII-DKKSALNREAALLAFEAAQGNLGPPFE  211 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhc-ccchhhcHHHHHHHHHHHHHhcCCCCC
Confidence            4556667777766777788888888777553  3445556788888888884 44333333 233333333333222223


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      ......+|.++..+.+..+.+|..+..+...+-+..+....+.     ++|.++.-+.+..++....++..++.++...+
T Consensus       212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap  286 (569)
T KOG1242|consen  212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAP  286 (569)
T ss_pred             chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence            3445677777777778888999888888877765522223333     45666666655688889999999999988777


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHh--------c------------------
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVID--------A------------------  228 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~--------~------------------  228 (383)
                      .... ..-..++|.+.+.|.++ ++.+|+.+..++..++.  .+++ ++.++.        .                  
T Consensus       287 ~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~  363 (569)
T KOG1242|consen  287 KQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVA  363 (569)
T ss_pred             HHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence            5554 34457899999999999 99999999999988764  2222 222211        0                  


Q ss_pred             ----CChHHHHHHhhc----CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142          229 ----GLIGPLVNLLQN----AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI  299 (383)
Q Consensus       229 ----~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l  299 (383)
                          --+..++.+++.    .+..+++.++..+.|++.-- ++.....++. .++|-|-..+.+..|++|..+.++|+.+
T Consensus       364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence                113344445443    46788899999999998754 3444433332 2677777777778899999999999988


Q ss_pred             HHhchhc
Q 037142          300 LKVGEAE  306 (383)
Q Consensus       300 ~~~~~~~  306 (383)
                      .+..+..
T Consensus       443 ~e~~g~~  449 (569)
T KOG1242|consen  443 LERLGEV  449 (569)
T ss_pred             HHHHHhh
Confidence            8865544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.68  E-value=1.1e-06  Score=79.32  Aligned_cols=265  Identities=16%  Similarity=0.150  Sum_probs=175.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcC---ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAE---SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PR   93 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~   93 (383)
                      ++...+++|.+..+.+|.+|+...+.++.-   ..+ .+.+...|.  .|.+-| ....+++....+.++..+.... -.
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            567788899999999999999988887631   111 123333453  356666 4556777777777776665543 22


Q ss_pred             CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh-CcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA-GVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      .-+.-+.+++|.|...+++....+..+.+..+..+|.. .++.+.. .+. .+-=.|+..|++.+.+++.+|..+++.++
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~-~peyi~~-rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN-SPEYIGV-REWMRICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc-CcccCCH-HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            23345689999999999999999999999999999987 4442211 110 12235778888899999999999999987


Q ss_pred             cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH
Q 037142          173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA  252 (383)
Q Consensus       173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  252 (383)
                      ..-.       -..++..|+.-|+.. +...|.....+++-.+..+.       -..++|.|+.=...++..++.-...+
T Consensus       759 ~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLka  823 (975)
T COG5181         759 RAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKA  823 (975)
T ss_pred             hhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHH
Confidence            4322       123455566655544 33333333334443332221       12356666665566788899888888


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          253 ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       253 l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      ++.+-.........++..  +.|.|-+.+.+.|+--+..|...+..+.-.+..
T Consensus       824 m~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         824 MCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence            888876644444555544  678888889888887787787777777765543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.67  E-value=5.4e-08  Score=56.72  Aligned_cols=41  Identities=44%  Similarity=0.866  Sum_probs=39.1

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA   46 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~   46 (383)
                      +++++..+++.|++|.|+++|++++++++..|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.66  E-value=6.9e-06  Score=74.43  Aligned_cols=240  Identities=15%  Similarity=0.077  Sum_probs=159.6

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..++..++++++++.+.++.+++.....++.-- .-.....+...|  -.|.+.|..+.+++.-..+.+++.+.....-.
T Consensus       603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            567778889999999999999998888776430 011122333333  35788888999999999999998887543322


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      ..+---.|++|.+.++|.+. +..+..+.+..++.++..+++..-.--=..+--.|++.|.+.+.++|+.|..+++.++.
T Consensus       681 ~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            22222348999999999999 99999999999999998766522110001123357777888899999999999988876


Q ss_pred             CCCHHHH-HHHH----------------------H-c---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcC
Q 037142          259 GGTHEQI-KYLE----------------------R-E---GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT  311 (383)
Q Consensus       259 ~~~~~~~-~~l~----------------------~-~---~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  311 (383)
                      ..++... ..++                      + .   .++|.|+.-...++..+|.-.+++++.++++..+....+ 
T Consensus       760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY-  838 (975)
T COG5181         760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY-  838 (975)
T ss_pred             hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH-
Confidence            5443322 2111                      1 1   256666666667778899999999999998766543221 


Q ss_pred             CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                             +..      ..+.|++-+.+.++--++.|...+..+.-
T Consensus       839 -------vy~------itPlleDAltDrD~vhRqta~nvI~Hl~L  870 (975)
T COG5181         839 -------VYS------ITPLLEDALTDRDPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             -------HHH------hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence                   111      13455555555666556666666655543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.64  E-value=2.9e-05  Score=68.97  Aligned_cols=331  Identities=15%  Similarity=0.040  Sum_probs=205.1

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHH
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWT   83 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~   83 (383)
                      ++++.+..+.-....+.+..++-+.+.+++..+.+++..+..+. +..+.+.+.++--.++.-|..+ .+..-+++|+..
T Consensus        13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl   91 (371)
T PF14664_consen   13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL   91 (371)
T ss_pred             hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence            34545555555555666665554555999999999999988764 5666677777656666767443 345558899999


Q ss_pred             HHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142           84 LSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ  163 (383)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~  163 (383)
                      +..+..... .....-.+++..++.+.++.+...+..++.+++.++-. ++   +.+...|++..+.+.+.++..++...
T Consensus        92 iR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P---~lv~~~gG~~~L~~~l~d~~~~~~~~  166 (371)
T PF14664_consen   92 IRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NP---ELVAECGGIRVLLRALIDGSFSISES  166 (371)
T ss_pred             HHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CH---HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence            988887632 22234578999999999999999999999999999976 33   56667799999999998877678888


Q ss_pred             HHHHHhhhhcCCCccccceecCCChHHHHHhhccc------cch--hHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHH
Q 037142          164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN------HKT--SIKNYACWIISNITAGNREQIQAVID-AGLIGPL  234 (383)
Q Consensus       164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~------~~~--~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L  234 (383)
                      .+.++..+..... ..+.+...--++.++.-+.+.      .+.  .....+..++..+...-+...-.-.+ ..++..|
T Consensus       167 l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL  245 (371)
T PF14664_consen  167 LLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL  245 (371)
T ss_pred             HHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence            8888888875544 333233222344444444322      022  23344555555554433222211112 2578889


Q ss_pred             HHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhchh
Q 037142          235 VNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER------EGCIKPLCDLL---LCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       235 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~------~~~i~~L~~ll---~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      +..+..+++++|+.....+..+..-..+........      .+-+..--++-   ........... .-=.+++.    
T Consensus       246 v~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~----  320 (371)
T PF14664_consen  246 VDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVN----  320 (371)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHH----
Confidence            999999999999999988888876543322222111      11110000000   00000000000 00001111    


Q ss_pred             cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 037142          306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYW  355 (383)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~  355 (383)
                              +...-....|.++|.++.|.++..+. ++.+..+|.-+|..++
T Consensus       321 --------~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  321 --------HYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             --------HHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence                    11122445578999999999998876 8889999998887664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=8.4e-07  Score=84.61  Aligned_cols=218  Identities=17%  Similarity=0.202  Sum_probs=164.9

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC--ChhHHHHHHHHHHhhcCCCC
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE--NLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~~a~~~L~~l~~~~~   92 (383)
                      .-|++|..+++|+++-.+++.--+.+...|..-++.++..+++.++-..+++.|..++  +++-+..|+++|+.++.+.+
T Consensus       510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~  589 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK  589 (1387)
T ss_pred             ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence            3499999999999999999999999999988877889888888888888999995423  45778899999999998853


Q ss_pred             CCC-hhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           93 RPI-FDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        93 ~~~-~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                      .-+ .....+.+.+++.++.++ .+-++..++-||+.|-.+ .....-.-...+..+.|...|.++-++|+.+|+.+|+.
T Consensus       590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d-~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt  668 (1387)
T KOG1517|consen  590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED-YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT  668 (1387)
T ss_pred             hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh-cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            333 333477889999999985 688999999999999987 44433334455788999999999999999999999999


Q ss_pred             hhcCC----Cccccce------------ecCCCh---HHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          171 IARGD----YSQTLYI------------INCGAL---PYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       171 l~~~~----~~~~~~l------------~~~~~i---~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                      +..+.    ++.....            .+..+.   -.++.+++.. .+-++.+...+++.++.+.......+.-....
T Consensus       669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~  747 (1387)
T KOG1517|consen  669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL  747 (1387)
T ss_pred             HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence            98752    2222211            111112   2455666777 88899999999999988776665555444444


Q ss_pred             HHH
Q 037142          232 GPL  234 (383)
Q Consensus       232 ~~L  234 (383)
                      +..
T Consensus       748 ~~~  750 (1387)
T KOG1517|consen  748 PES  750 (1387)
T ss_pred             cch
Confidence            433

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=2.4e-06  Score=76.39  Aligned_cols=318  Identities=12%  Similarity=0.034  Sum_probs=199.4

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC-C
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR-P   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~   94 (383)
                      .+++++.+.++.+++..+|..|+..+.|++.-.. ......-..+...+.++. .+.+..++ .+...+-.+..+-.. .
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVTES  159 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcccc
Confidence            4788999999999999999999999999985211 001111122334445554 34455444 445666666665522 2


Q ss_pred             -ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           95 -IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        95 -~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                       ...-..+++|.+...+...++..|.....-+..+-.. ++ +.+..+  ..+++-|+.+|.+++++|+..+=.++.++.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl--~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYL--PSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcc--hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence             2445588999999999999999999998888888765 22 222222  247888999999999999977666666554


Q ss_pred             c---CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch-hHHHH
Q 037142          173 R---GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF-YIKKE  248 (383)
Q Consensus       173 ~---~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~  248 (383)
                      .   +++...   --...++.++.-+.++ ++.++..|+.-+..++.-.+... ...-.|++..+..++.+... .++..
T Consensus       237 ~eI~s~P~s~---d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~  311 (675)
T KOG0212|consen  237 AEIRSSPSSM---DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEY  311 (675)
T ss_pred             HHHhcCcccc---CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHH
Confidence            2   233221   1235678888888888 99999998877777776443221 11235667777777766544 35554


Q ss_pred             HHHH---HHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH
Q 037142          249 AAWA---ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE  325 (383)
Q Consensus       249 a~~~---l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  325 (383)
                      +...   +..++..  +...+.+--..++..|...+.++..+.+..++.-+..+....+..-            ..+  .
T Consensus       312 a~~~n~~l~~l~s~--~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql------------~~h--~  375 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSS--ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL------------LVH--N  375 (675)
T ss_pred             HHHHHHHHHHHHhh--hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh------------hhh--c
Confidence            4333   2233322  1222221112467778888888888899888877776666544321            111  1


Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          326 AKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       326 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      ...++.|..-+.+.+++|..++..++.....+.+.
T Consensus       376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            12234444445566777778888888777776654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=0.00011  Score=61.88  Aligned_cols=328  Identities=13%  Similarity=0.064  Sum_probs=205.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh--HHHHHH--HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP--RFRDLV--LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~--~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      ..+.|..-|..++..++..++..++-+..+++  ...+..  ++.|+.+.++.++ -.+|.++...|...+..++..+..
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHHH
Confidence            45556666667888999999999999987665  444443  4789999999999 577889999999999999886533


Q ss_pred             CChhhhhchhHHHH--HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142           94 PIFDQVRPCLPTLA--QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN  170 (383)
Q Consensus        94 ~~~~~~~~~i~~l~--~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~  170 (383)
                      ....+.+.....+-  .+.-..+.-+|..+...+..+..- ++........+|++..+..-|+. .|.-|+..++.....
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            22233333333321  222233456677788888888877 67777778888999888887876 777788888888888


Q ss_pred             hhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhc----C--CHH-HHHHHHhcCChHHHHHHhhcCc
Q 037142          171 IARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITA----G--NRE-QIQAVIDAGLIGPLVNLLQNAV  242 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~----~--~~~-~~~~~~~~~~l~~L~~ll~~~~  242 (383)
                      +++. ....+.+.+.|+++.+..++... .+|.-+..++...+.+..    .  +++ ..+.++  -+++...+++..++
T Consensus       241 Laet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnD  317 (524)
T KOG4413|consen  241 LAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMND  317 (524)
T ss_pred             HHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCC
Confidence            8743 33556678889999999988643 144444445544444321    1  111 111111  13445566677789


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC--hH-HHHhhcCCCCHHHHHHHHHHHHHHHHhch--hcccCcCCCCccc
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGC--IK-PLCDLLLCPDPQIVTVCLKALENILKVGE--AEKNTDTDIGDVN  317 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~--i~-~L~~ll~~~~~~v~~~al~~l~~l~~~~~--~~~~~~~~~~~~~  317 (383)
                      +.....|+.+++.+.++  .+..+.+.+.|-  .. .+.+..+.....-+..++.+|.++...-.  .++...  -....
T Consensus       318 pdaieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitD--gkaee  393 (524)
T KOG4413|consen  318 PDAIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITD--GKAEE  393 (524)
T ss_pred             chHHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccc--cHHHH
Confidence            99999999999999876  466677666553  22 23444443333335556666666654211  111110  00111


Q ss_pred             HHHHHHHHh-------ccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          318 QYAQLVEEA-------KGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       318 ~~~~~l~~~-------~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      ..+..+.+.       ...+....++.+|.++++-.+.+.+..+
T Consensus       394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi  437 (524)
T KOG4413|consen  394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI  437 (524)
T ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence            111111111       2334455678888999988887666544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.58  E-value=6.9e-06  Score=73.77  Aligned_cols=275  Identities=12%  Similarity=0.081  Sum_probs=179.7

Q ss_pred             HHHHhhCC-CChHHHHHHHHHHHHHhcC-ChHHHHHHHhcCChHHH-HHHhcCCCChhHHHHHHHHHHhhcCC-CC-CCC
Q 037142           21 IFVKLLAS-PSDDIRMQSVWALGNIAAE-SPRFRDLVLGEAALIPL-LTQLNNHENLSMKRIATWTLSNLCGG-KP-RPI   95 (383)
Q Consensus        21 ~L~~lL~~-~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L-~~~L~~~~~~~~~~~a~~~L~~l~~~-~~-~~~   95 (383)
                      .++....+ +....+.+++.++++++.. .|+.-...- +.++-.+ ..-++..++..+|-.++.+|.+-+.. .. ...
T Consensus       137 ~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s-N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~  215 (858)
T COG5215         137 EMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS-NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCY  215 (858)
T ss_pred             HHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh-hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33333333 4567888899999998853 342211111 1222223 33444556788888899988873221 11 111


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      .....-+++.....-+.+|.+++..+..|+..+-.- ..+..+...+.-+.......++++++++...+......+|...
T Consensus       216 E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L-yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEe  294 (858)
T COG5215         216 EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML-YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEE  294 (858)
T ss_pred             hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            122244666677777788999999999999988754 3455555556556677788899999999999999888887543


Q ss_pred             Cccc---ccee-----c--------CCChHHHHHhhccc------cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142          176 YSQT---LYII-----N--------CGALPYLLGLLIDN------HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP  233 (383)
Q Consensus       176 ~~~~---~~l~-----~--------~~~i~~l~~ll~~~------~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~  233 (383)
                      -+..   +.+-     +        .+++|.++++|...      ++..+-..|..+|.-.+...   .+.+++. ++..
T Consensus       295 id~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~F  370 (858)
T COG5215         295 IDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGF  370 (858)
T ss_pred             hhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHH
Confidence            2211   0011     1        13678888888641      14456666666776665422   1222222 4555


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          234 LVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       234 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      +-+-+.+++..-|+.|+.+++.+....+..+..+++. ..+|.+...+.++.-.++..+.|++..+...
T Consensus       371 vEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         371 VEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            5556677888999999999999999877777777654 5788888888877778888999999888764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.53  E-value=5.8e-06  Score=79.12  Aligned_cols=223  Identities=16%  Similarity=0.146  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhh-hchhHHHHHhhcc
Q 037142           34 RMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQV-RPCLPTLAQLVHS  112 (383)
Q Consensus        34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~l~~ll~~  112 (383)
                      |..|+..|+.+..-.+-.....+.-|+.|.++++| +++-.+++-..+++-+.+..-++.++...+ .++-.+.++.+.+
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL-QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL-QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh-ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            56677778887776667777777889999999999 677788888888887887776666655554 4555666666665


Q ss_pred             -C--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHhhhhcCCCccccceecCCCh
Q 037142          113 -N--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP-SQSVLTQALHTVGNIARGDYSQTLYIINCGAL  188 (383)
Q Consensus       113 -~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  188 (383)
                       +  +++-+..++.+|..++++ ..-..+...+.+++...+..|.++ .+-++..++-+|+.|=.+.+...-.-.+.+..
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence             2  358889999999999998 666777788888999999999885 68888889999999987777655555667889


Q ss_pred             HHHHHhhccccchhHHHHHHHHHHHHhcC----CHHHHHHH------------HhcCCh---HHHHHHhhcCchhHHHHH
Q 037142          189 PYLLGLLIDNHKTSIKNYACWIISNITAG----NREQIQAV------------IDAGLI---GPLVNLLQNAVFYIKKEA  249 (383)
Q Consensus       189 ~~l~~ll~~~~~~~~~~~a~~~l~nl~~~----~~~~~~~~------------~~~~~l---~~L~~ll~~~~~~v~~~a  249 (383)
                      +.|..+|+++ -++||.+|+++|+.+..+    .++.....            ++..+.   -.+..+++.+++-+|.+.
T Consensus       645 ekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  645 EKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            9999999998 999999999999998764    22222222            122222   256667778899999999


Q ss_pred             HHHHHHhcCC
Q 037142          250 AWAISNATFG  259 (383)
Q Consensus       250 ~~~l~~l~~~  259 (383)
                      +.++..+...
T Consensus       724 ~v~ls~~~~g  733 (1387)
T KOG1517|consen  724 VVALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.53  E-value=2.9e-05  Score=69.16  Aligned_cols=209  Identities=22%  Similarity=0.289  Sum_probs=157.5

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      ..++.+.+.+.+.++.++..|.+.++.+..           ...++.+..++ .+.+..++..++.+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELL-SDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHh-cCCCHHHHHHHHHHHHccCCh------
Confidence            367888899999899999999999777653           23578899999 788899999999988887643      


Q ss_pred             hhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC------------hhhHHH
Q 037142           97 DQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS------------QSVLTQ  163 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~------------~~v~~~  163 (383)
                          ..++.++.++. +.+..++..+.++|..+-..            ..+..++..+.++.            ..++..
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE------------RALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch------------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                27788899888 68999999999999998865            13566666666644            145666


Q ss_pred             HHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142          164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                      +...++.+-           +...++.+...+.+. ...+|..+..+++.+...+         ..+.+.+...+.+++.
T Consensus       169 a~~~l~~~~-----------~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~  227 (335)
T COG1413         169 AAEALGELG-----------DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL  227 (335)
T ss_pred             HHHHHHHcC-----------ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH
Confidence            666665543           124578888899888 8899999999999987654         3455678888889999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC  292 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  292 (383)
                      .+|..++.+++.+-...            ....+...+...+..+...+
T Consensus       228 ~vr~~~~~~l~~~~~~~------------~~~~l~~~l~~~~~~~~~~~  264 (335)
T COG1413         228 EVRKAALLALGEIGDEE------------AVDALAKALEDEDVILALLA  264 (335)
T ss_pred             HHHHHHHHHhcccCcch------------hHHHHHHHHhccchHHHHHH
Confidence            99999999998875431            35556666666665555443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.52  E-value=3.5e-06  Score=79.75  Aligned_cols=273  Identities=16%  Similarity=0.163  Sum_probs=165.8

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR  100 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  100 (383)
                      .|.+.+.++|.+.|..|..-|.+=...+...-+.=-+..++..++++| ++.+.+++..|+.+++-++..-   ......
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKv---ke~~le   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKV---KEDQLE   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhc---hHHHHH
Confidence            577788889999999988766442211111111111345678899999 7889999999999999999543   233344


Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC----cHHHHHHhcCC--CChhhHHHHHHHHhhhhcC
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG----VCPRLVKLLGH--PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~  174 (383)
                      .++.-|..-+-++..+.+.-..-.|.....+ -++.........    +.|.+...+..  +...++-.++..++.+...
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence            5555555554444444444444444333322 111111122222    44555555433  4445788888888777654


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWA  252 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~  252 (383)
                      .....-. +..+++..++.-+.+. ...+|+.++.+|+.++... ......     ++..|.+-+.. .....-+.-..+
T Consensus       164 ~g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~  236 (1233)
T KOG1824|consen  164 FGTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQC  236 (1233)
T ss_pred             hcccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHH
Confidence            4432221 4456777788888888 8999999999999998643 222222     22333333332 344444445666


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142          253 ISNATFGGTHEQIKYLEREGCIKPLCDLL---LCPDPQIVTVCLKALENILKVGEAEK  307 (383)
Q Consensus       253 l~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~al~~l~~l~~~~~~~~  307 (383)
                      |+.++...+...-..+  ..+++.+.+..   +..+.++++.++.++..++..++.+-
T Consensus       237 l~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei  292 (1233)
T KOG1824|consen  237 LAAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI  292 (1233)
T ss_pred             HHHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh
Confidence            6666654332222221  34788888877   67788999999999999999988764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.50  E-value=7.3e-07  Score=64.51  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=107.5

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      +.+..|+.-.+...+.+.+++...-|+|++-++.........+++...+..+..++..+.+.++..|+|+|-.  ..+..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHHH
Confidence            4466777777667799999999999999999876656666788999999999999999999999999999986  77888


Q ss_pred             HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142          139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP  189 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  189 (383)
                      .+.+.+.+|.++..+.++...+...++.++..++...-.....+....+++
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~  144 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR  144 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence            899999999999999999999999999999999866654444444433333

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.48  E-value=3.3e-05  Score=69.56  Aligned_cols=273  Identities=14%  Similarity=0.108  Sum_probs=175.5

Q ss_pred             HHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh----HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           20 PIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL----IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        20 ~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i----~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      .....-++. ++..+|..|+.+|.+-..   ..+..+...+-.    +..+..- +.++.+++..+..+|..+..-....
T Consensus       180 aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~LyY~f  255 (858)
T COG5215         180 AIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMMLYYKF  255 (858)
T ss_pred             HHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444 667788888888877321   222222222222    2233443 6789999999999998887644221


Q ss_pred             -ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH---------------HHHHhCcHHHHHHhcCC---
Q 037142           95 -IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ---------------AVIEAGVCPRLVKLLGH---  155 (383)
Q Consensus        95 -~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------~~~~~~~i~~l~~~L~~---  155 (383)
                       ......-......+.+++++.++...+...-..+|....+....               ...-..++|.++.+|..   
T Consensus       256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e  335 (858)
T COG5215         256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE  335 (858)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence             22222445555667788999999999888777777541110000               00112378899999854   


Q ss_pred             ----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          156 ----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       156 ----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                          +++++-..|..||..++....+.   +++ .++..+-.-+.++ +..-|+.+..+++.+..+..+....-+-+..+
T Consensus       336 d~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qal  410 (858)
T COG5215         336 DYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIVPQAL  410 (858)
T ss_pred             CccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhh
Confidence                46677788888887777554421   222 2344444555667 88889999999999998877766666667789


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHh-hcC--CCCHHHHHHHHHHHHHHHHhchhc
Q 037142          232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCD-LLL--CPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~-ll~--~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      |.+...+.++...++..++|+++.++..     ....++ .+-++..++ ++.  .+.|.+..++.|...|++....+.
T Consensus       411 p~i~n~m~D~~l~vk~ttAwc~g~iad~-----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a  484 (858)
T COG5215         411 PGIENEMSDSCLWVKSTTAWCFGAIADH-----VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKA  484 (858)
T ss_pred             HHHHHhcccceeehhhHHHHHHHHHHHH-----HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhh
Confidence            9999999999999999999999999854     222222 333333322 221  346677888999999999875543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.00034  Score=61.31  Aligned_cols=263  Identities=14%  Similarity=0.121  Sum_probs=168.7

Q ss_pred             cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh---------HHHHHHHhcCChHHHHHHhcCCCC
Q 037142            3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP---------RFRDLVLGEAALIPLLTQLNNHEN   73 (383)
Q Consensus         3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~~L~~~~~   73 (383)
                      .++-|+.-..+++.++++.|+.+|.+++.+|....+..|..++..+.         ...+.+++.++++.|++-+ ..-|
T Consensus       111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv-eRLd  189 (536)
T KOG2734|consen  111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV-ERLD  189 (536)
T ss_pred             hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH-HHhh
Confidence            34568888899999999999999999999999999999999885431         1222233333333333333 1112


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc
Q 037142           74 LSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL  153 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L  153 (383)
                      +.+++.                                   ..-...++..+-|+... .+.....+++.|.+..|+.-+
T Consensus       190 Esvkee-----------------------------------a~gv~~~L~vveNlv~~-r~~~~~~~~e~~ll~WLL~rl  233 (536)
T KOG2734|consen  190 ESVKEE-----------------------------------ADGVHNTLAVVENLVEV-RPAICTEIVEQGLLSWLLKRL  233 (536)
T ss_pred             hcchhh-----------------------------------hhhhHHHHHHHHHHHhc-cHHHHHHHHHhhHHHHHHHHH
Confidence            222221                                   12233445555666665 566666777778877777755


Q ss_pred             CC--CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-----c---ccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142          154 GH--PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-----D---NHKTSIKNYACWIISNITAGNREQIQ  223 (383)
Q Consensus       154 ~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-----~---~~~~~~~~~a~~~l~nl~~~~~~~~~  223 (383)
                      ..  +-......+..++..+...++.....+-+..+++.++.-+.     +   .......++...+|+.+... +..+.
T Consensus       234 ~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~  312 (536)
T KOG2734|consen  234 KGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRE  312 (536)
T ss_pred             hcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhh
Confidence            43  34455677778888777777666666666788888877663     1   11234455566666665544 47788


Q ss_pred             HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CC---------CHHHHHHH
Q 037142          224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CP---------DPQIVTVC  292 (383)
Q Consensus       224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~---------~~~v~~~a  292 (383)
                      .++...++..+.-+++. ....+..|..+|-....+. ..+.+..+++..+...++.+.- .+         ..+.-+..
T Consensus       313 ~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv  391 (536)
T KOG2734|consen  313 RFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHV  391 (536)
T ss_pred             hhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHH
Confidence            88877777666555555 5567778888998888764 3467777788766666665433 21         22455667


Q ss_pred             HHHHHHHHHhch
Q 037142          293 LKALENILKVGE  304 (383)
Q Consensus       293 l~~l~~l~~~~~  304 (383)
                      +..|+.++..+.
T Consensus       392 ~siiaSl~~~~~  403 (536)
T KOG2734|consen  392 CSILASLLRNLD  403 (536)
T ss_pred             HHHHHHHHHhcc
Confidence            777888877653

>TIGR02270 conserved hypothetical protein

Probab=98.48  E-value=4e-05  Score=68.94  Aligned_cols=221  Identities=19%  Similarity=0.073  Sum_probs=156.1

Q ss_pred             CChHHHHHhhC-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLA-SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      .+++.++..|. +.+.+++..+++++.  ..+.+         ..+..|+..| .+.++.++..+..+|+.+-..     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVL-QAGPEGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHh-cCCCHHHHHHHHHHHhcCCch-----
Confidence            45778888884 577888777666654  22221         1278899999 677888999999998865433     


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                           ...+.|..++++.++.++..++.++......             ..+.+..+|+++++.++..++++++.+-.. 
T Consensus       117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-  177 (410)
T TIGR02270       117 -----QAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------------PGPALEAALTHEDALVRAAALRALGELPRR-  177 (410)
T ss_pred             -----HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence                 3778899999999999998888766653322             346788888999999999999999887521 


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH------------------h----cCChHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI------------------D----AGLIGP  233 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~------------------~----~~~l~~  233 (383)
                                ..++.|...+.+. ++.||..|++.++.+..  +.....+.                  .    ...++.
T Consensus       178 ----------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~  244 (410)
T TIGR02270       178 ----------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAW  244 (410)
T ss_pred             ----------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHH
Confidence                      3466777888888 99999999998876632  11111111                  1    123444


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          234 LVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       234 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      |..+++++  .++..++++++.+-..            ..++.|+..+.+..  +...|.+++..++-.
T Consensus       245 L~~ll~d~--~vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       245 LRELLQAA--ATRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             HHHHhcCh--hhHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            55555543  3888888888877543            25778888876544  888899999988853

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.45  E-value=3.7e-06  Score=60.92  Aligned_cols=154  Identities=8%  Similarity=0.040  Sum_probs=121.7

Q ss_pred             CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142          186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI  265 (383)
Q Consensus       186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  265 (383)
                      +.+..|+.-.....+.+.++....-|.|.+. +|.+-..+.+.++++.+++.+..++..++..+...|||+|..  +...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d--~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD--KTNA   92 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC--hHHH
Confidence            4455666655555488888888888888865 457777888999999999999999999999999999999976  7888


Q ss_pred             HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 037142          266 KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHE  345 (383)
Q Consensus       266 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~  345 (383)
                      +.+.+.++++.++..+.++...+...++.++..+...+.             ..+..+-...+++.+++.-.+.+-+.+.
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-------------t~r~ell~p~Vv~~v~r~~~s~s~~~rn  159 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-------------TERDELLSPAVVRTVQRWRESKSHDERN  159 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-------------chhHHhccHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999988888888888876654322             2344455666777777777777777777


Q ss_pred             HHHHHHHHhc
Q 037142          346 KSAKILETYW  355 (383)
Q Consensus       346 ~a~~~l~~~~  355 (383)
                      .|...++.+.
T Consensus       160 La~~fl~~~~  169 (173)
T KOG4646|consen  160 LASAFLDKHV  169 (173)
T ss_pred             HHHHHHHhhc
Confidence            7877777654

>TIGR02270 conserved hypothetical protein

Probab=98.44  E-value=7.1e-05  Score=67.35  Aligned_cols=152  Identities=16%  Similarity=0.056  Sum_probs=118.0

Q ss_pred             ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142           60 ALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA  139 (383)
Q Consensus        60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (383)
                      .++.++..|..+++.++...+++++...  +.+        ..+..++..+.+.++.++..+..+|..+-..        
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~--------  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ--EDA--------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR--------  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch--------
Confidence            4677888885566677777666655422  211        1488999999999999999999999876643        


Q ss_pred             HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142          140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR  219 (383)
Q Consensus       140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~  219 (383)
                          +..+.|..+|+++++.++..++.+++...            ....+.+..++++. ++.++..++++++.+...  
T Consensus       117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHE-DALVRAAALRALGELPRR--  177 (410)
T ss_pred             ----HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCC-CHHHHHHHHHHHHhhccc--
Confidence                35688999999999999998887776621            12367888999988 999999999999988643  


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                               ..++.|...+.+.++.||..|++++..+-
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                     35666788899999999999999997774

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=7.4e-05  Score=62.31  Aligned_cols=269  Identities=16%  Similarity=0.144  Sum_probs=165.3

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHH-hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVL-GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      .-++.++.+.+|.++..|...+..++..  ..+...- ..-.++.+.+++. ..++  .+.|+.++.|++.+... ....
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq~~~l-~~~l   79 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQKEEL-RKKL   79 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHhhHHH-HHHH
Confidence            4578899999999999999999988865  2222111 1234677888884 4333  77899999999988522 2333


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH--HH----hCcHHHHHHhcCCC-C-hhhHHHHHHHHhh
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV--IE----AGVCPRLVKLLGHP-S-QSVLTQALHTVGN  170 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~----~~~i~~l~~~L~~~-~-~~v~~~a~~~L~~  170 (383)
                      ...++..+...+.+....+-..+|..+.|+++. +.......  ..    +|++.....+..++ + .--.......+.|
T Consensus        80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~-~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSRD-DDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHHHHHHHHHHhcCcccchHHHHHHHHHHhccC-chHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            334777777777777778888999999999987 33222221  11    34433333344332 1 1223455667777


Q ss_pred             hhcCCCccccceecCCC--hHHHHHhhccccchhHHHH-HHHHHHHHhcCCHHHHHHHHh--cCChHHHH----------
Q 037142          171 IARGDYSQTLYIINCGA--LPYLLGLLIDNHKTSIKNY-ACWIISNITAGNREQIQAVID--AGLIGPLV----------  235 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~--i~~l~~ll~~~~~~~~~~~-a~~~l~nl~~~~~~~~~~~~~--~~~l~~L~----------  235 (383)
                      ++..... ...+.....  ...+..+- +. +..+|+. .+++|.|++... .....+++  .+++|.+.          
T Consensus       159 ls~~~~g-R~l~~~~k~~p~~kll~ft-~~-~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagpee~s  234 (353)
T KOG2973|consen  159 LSQFEAG-RKLLLEPKRFPDQKLLPFT-SE-DSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGPEELS  234 (353)
T ss_pred             Hhhhhhh-hhHhcchhhhhHhhhhccc-cc-chhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCccccC
Confidence            7754432 233333332  22333332 33 5566554 678888887654 22233332  22233322          


Q ss_pred             -----------HHhh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHH
Q 037142          236 -----------NLLQ-----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALEN  298 (383)
Q Consensus       236 -----------~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~  298 (383)
                                 +++.     .+++.+|+.-..+|..+|..  ...++.+.+.|+.+.+-.+-+.. +++++..+-.....
T Consensus       235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                       3332     24779999999999999876  78899989999999888887764 66666655444444


Q ss_pred             HHH
Q 037142          299 ILK  301 (383)
Q Consensus       299 l~~  301 (383)
                      +++
T Consensus       313 Lv~  315 (353)
T KOG2973|consen  313 LVR  315 (353)
T ss_pred             HHh
Confidence            443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.40  E-value=4.3e-05  Score=72.70  Aligned_cols=268  Identities=14%  Similarity=0.109  Sum_probs=161.4

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142           63 PLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI  141 (383)
Q Consensus        63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  141 (383)
                      .|++.+ .++|.++|-.|+.=|.+=..+. -..+.......+..+++++++.+.+++..|..|++-++.....+....  
T Consensus         9 ~Llekm-tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~--   85 (1233)
T KOG1824|consen    9 NLLEKM-TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET--   85 (1233)
T ss_pred             HHHHHc-cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH--
Confidence            466677 5778888888887665443333 333555567899999999999999999999999999996523333333  


Q ss_pred             HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-----ccchhHHHHHHHHHHHHhc
Q 037142          142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-----NHKTSIKNYACWIISNITA  216 (383)
Q Consensus       142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl~~  216 (383)
                         +++.|..-+-++..+.+.-+.-.|.....+-+.......-..+.+.+...+.+     .....++..++..++-+..
T Consensus        86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence               34455555444443344332222222222222222233444445555444432     2134588888888877654


Q ss_pred             CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHH
Q 037142          217 GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKA  295 (383)
Q Consensus       217 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~  295 (383)
                      .-....-. +..+++..++.-+.++..-+|+.|+.+|+.++..++.....+     ++..|.+-|..+ .+.....-+.+
T Consensus       163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~-----li~~Ll~~L~~~~q~~~~rt~Iq~  236 (1233)
T KOG1824|consen  163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE-----LIEHLLKGLSNRTQMSATRTYIQC  236 (1233)
T ss_pred             hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHhccCCCCchHHHHHHHHH
Confidence            33222211 344556666667778888999999999999998877665555     466666666543 34444445667


Q ss_pred             HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh---cCCCHHHHHHHHHHHHHhcC
Q 037142          296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ---RHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~---~~~~~~v~~~a~~~l~~~~~  356 (383)
                      |..+++..+.+...         +..     ..++.+.++.   +..++++++.+.+.++.|..
T Consensus       237 l~~i~r~ag~r~~~---------h~~-----~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  237 LAAICRQAGHRFGS---------HLD-----KIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             HHHHHHHhcchhhc---------ccc-----hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            77777665543211         111     1234445555   66667777777777766543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00011  Score=66.20  Aligned_cols=271  Identities=10%  Similarity=0.030  Sum_probs=170.3

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI   95 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~   95 (383)
                      .+|.|-+-+...++..|...+.-|..+-...+ +....+  ..+++.|+..| .+++.+++..+=.+++++...- ..+.
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~  244 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPS  244 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence            45555555556788888887766666554322 111111  24567788899 6778888877766666654432 1222


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh-hHHHHHH---HHhhh
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALH---TVGNI  171 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~-v~~~a~~---~L~~l  171 (383)
                      .......++.++..+.++++.++..|+.-+..+..- . +..-...-+|++..++.++.++++. +...+..   .+..+
T Consensus       245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l  322 (675)
T KOG0212|consen  245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-P-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL  322 (675)
T ss_pred             ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-C-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence            224567899999999999999998887777766654 2 2222233357888888888886653 4333322   22233


Q ss_pred             hcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHH
Q 037142          172 ARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA  250 (383)
Q Consensus       172 ~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  250 (383)
                      +..... .+. ++. .+++.+...++++ ....|..++.-+..+-...+. ........+++.|..-+.+.+..+...+.
T Consensus       323 ~s~~~~-~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L  398 (675)
T KOG0212|consen  323 VSSERL-KEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLAL  398 (675)
T ss_pred             Hhhhhh-ccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence            322211 111 333 4678888888888 889999988777766543322 22223567888999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          251 WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       251 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      ..++++|...+..+...     ++..|++++..+..-+...+-..+.+++..
T Consensus       399 ~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  399 SLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            99999998753322211     345566666555444455565566665543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.39  E-value=2.8e-05  Score=65.00  Aligned_cols=267  Identities=14%  Similarity=0.091  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142           75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG  154 (383)
Q Consensus        75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~  154 (383)
                      ..+..-..++.....+.+........-+...|-++++.-++-.+.-+..++.++.-. .....-...+..+-.+++..++
T Consensus       123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~  201 (432)
T COG5231         123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQ  201 (432)
T ss_pred             HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHH
Confidence            344444555555555543332222223444555566666666788888999998865 2222223345456677888887


Q ss_pred             C--CChhhHHHHHHHHhhhhcCCCccccceec--CCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-HHHHHHHH-hc
Q 037142          155 H--PSQSVLTQALHTVGNIARGDYSQTLYIIN--CGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-REQIQAVI-DA  228 (383)
Q Consensus       155 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~~~~~~~~-~~  228 (383)
                      .  ++.+++...+-+++.++.+.. ..+ .++  ...+.-++.+.+....+.+-+-++.++.|++... ...+..+. .+
T Consensus       202 n~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~  279 (432)
T COG5231         202 NYVGVKQLQYNSLIIIWILTFSKE-CAQ-DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLN  279 (432)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhc
Confidence            6  678899999999999986543 332 222  1345666666665547788888999999998733 23444443 44


Q ss_pred             CChHHHHHHhhc--CchhHHHHHHHHHHHhcCC---------------------CC--------HHHHHHHHH--cCChH
Q 037142          229 GLIGPLVNLLQN--AVFYIKKEAAWAISNATFG---------------------GT--------HEQIKYLER--EGCIK  275 (383)
Q Consensus       229 ~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~---------------------~~--------~~~~~~l~~--~~~i~  275 (383)
                      ++.+..-.++..  .+.+++...-..=..+..+                     ..        ..++..+.+  ..++.
T Consensus       280 ~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k  359 (432)
T COG5231         280 DISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVK  359 (432)
T ss_pred             chHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHH
Confidence            455555444443  2444443322211111100                     00        122333333  24677


Q ss_pred             HHHhhcCCCCHH-HHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          276 PLCDLLLCPDPQ-IVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       276 ~L~~ll~~~~~~-v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      .|...++...+. ....|+.-+..+++.             .++...++...|+-+.+.+|++|++++|+-.|..++..+
T Consensus       360 ~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-------------~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~  426 (432)
T COG5231         360 VLKKYLQSNNPNTWICVACSDIFQLVRA-------------SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC  426 (432)
T ss_pred             HHHHHHhcCCCCceEeeeHhhHHHHHHh-------------CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence            788888876665 344567777777764             345677899999999999999999999999999988876


Q ss_pred             cCC
Q 037142          355 WCG  357 (383)
Q Consensus       355 ~~~  357 (383)
                      .+.
T Consensus       427 i~~  429 (432)
T COG5231         427 ISS  429 (432)
T ss_pred             Hhh
Confidence            543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.38  E-value=8.3e-07  Score=51.65  Aligned_cols=41  Identities=41%  Similarity=0.611  Sum_probs=38.0

Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      +++.++.+++.|++|.|+.++.+++++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36788899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.37  E-value=4.8e-05  Score=71.27  Aligned_cols=236  Identities=15%  Similarity=0.119  Sum_probs=166.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHH---HHHHHhcCChHHHHHHhcCC------CChhHHHHHHHHHHhhc
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRF---RDLVLGEAALIPLLTQLNNH------ENLSMKRIATWTLSNLC   88 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~~L~~~------~~~~~~~~a~~~L~~l~   88 (383)
                      .++.-+++|+..+++-+..++..+.++...++..   ++.+.+.=+...+-++|+..      +....+.-++.+|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3566678899888888889999999999766532   33466665578888888431      34577888999999999


Q ss_pred             CCCCCCChhhhhchhHHHHHhhccCCH-HHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142           89 GGKPRPIFDQVRPCLPTLAQLVHSNDE-HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT  167 (383)
Q Consensus        89 ~~~~~~~~~~~~~~i~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~  167 (383)
                      .++.......+-+-+|.++..+...+. ++...++.+|..++..  ++..+.+.+.|.++.|.+.+.+ .+.....++.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            976555556678899999999987776 9999999999999965  7888999999999999999988 55678888888


Q ss_pred             HhhhhcCCCccccceecC----CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH-HHHHHhcC----ChHHHHHHh
Q 037142          168 VGNIARGDYSQTLYIINC----GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ-IQAVIDAG----LIGPLVNLL  238 (383)
Q Consensus       168 L~~l~~~~~~~~~~l~~~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~-~~~~~~~~----~l~~L~~ll  238 (383)
                      +.+++.......-. -..    .++..+...+... ....+...+..|+.+....+.. ........    +..-+..++
T Consensus       163 L~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  163 LLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            88887654311110 111    3345555555555 6677888899999887655211 11112223    344455566


Q ss_pred             hc-CchhHHHHHHHHHHHhcC
Q 037142          239 QN-AVFYIKKEAAWAISNATF  258 (383)
Q Consensus       239 ~~-~~~~v~~~a~~~l~~l~~  258 (383)
                      .+ ..+.-|..+....+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            55 356667766666666543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.37  E-value=2.6e-05  Score=76.01  Aligned_cols=295  Identities=14%  Similarity=0.102  Sum_probs=187.0

Q ss_pred             hHHHHHhhCC-CChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC----C
Q 037142           19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK----P   92 (383)
Q Consensus        19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~----~   92 (383)
                      ++.+...+.. ...+.+..|+..|..++... .+.+    =..++|.++.++ .++...++..|+.+|..+....    +
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            5556666655 66788899999999888522 1211    134689999999 7888999999998887776433    2


Q ss_pred             CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142           93 RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                      .....+..-++|.|..++.+ ....+|..-+.+|..|+.. .    ..+.+.+.-.....++.+++.+.       ... 
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t-A----~rFle~~q~~~~~g~~n~~nset-------~~~-  565 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT-A----YRFLELTQELRQAGMLNDPNSET-------APE-  565 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH-H----HHHHHHHHHHHhcccccCccccc-------ccc-
Confidence            33445558899999999998 4566787888888888854 2    12222222223333455544430       000 


Q ss_pred             hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHH
Q 037142          172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAW  251 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  251 (383)
                       ...+...+.+.+ ++-.....++.++ ++.|++.-+..|.-||..-.   +.--+.-+++.|+..|++.+..+|-.-..
T Consensus       566 -~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfd  639 (1431)
T KOG1240|consen  566 -QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFD  639 (1431)
T ss_pred             -cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHh
Confidence             011111111221 2334555666666 78888888888777764211   11112336889999999998888876555


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142          252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK  331 (383)
Q Consensus       252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (383)
                      .|.-++..-+..-    .+..++|.|.+-+.++++-|...|++++..+++.+--++.         .+.++      ++.
T Consensus       640 sI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v~~i------~~~  700 (1431)
T KOG1240|consen  640 SIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AVKDI------LQD  700 (1431)
T ss_pred             hccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HHHHH------HHh
Confidence            5554433322111    2345788888999999999999999999999986543321         12222      345


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          332 IENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       332 L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      ...++-|||.=|++.+..+|.....
T Consensus       701 v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  701 VLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hhhheeCchHHHHHHHHHHHHHHHh
Confidence            5677889999999999887765443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=0.00035  Score=67.65  Aligned_cols=292  Identities=14%  Similarity=0.149  Sum_probs=187.6

Q ss_pred             cCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHH
Q 037142            3 ASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATW   82 (383)
Q Consensus         3 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~   82 (383)
                      ++.+.+-.+.++..|.+..|+.+|.+. |..|..++..|..+++. ++..+..++.|++..+..++..+.....+.+++.
T Consensus      1799 ~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAe 1876 (2235)
T KOG1789|consen 1799 ATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAE 1876 (2235)
T ss_pred             HhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHH
Confidence            344556667788899999999999764 57799999999999975 4777777889999999999887888889999999


Q ss_pred             HHHhhcCCC---CCCChhhh-----------hchhHHHHHhhcc--CCHHH------HHHHHHHHHHhcc----CC---C
Q 037142           83 TLSNLCGGK---PRPIFDQV-----------RPCLPTLAQLVHS--NDEHV------MSNACWGLSLLCD----GG---K  133 (383)
Q Consensus        83 ~L~~l~~~~---~~~~~~~~-----------~~~i~~l~~ll~~--~~~~~------~~~~~~~l~~l~~----~~---~  133 (383)
                      .++.+..+.   |......+           .+.-...+..++.  ++|++      +......+..+..    +.   +
T Consensus      1877 LlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p 1956 (2235)
T KOG1789|consen 1877 LLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDP 1956 (2235)
T ss_pred             HHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999998876   32222111           1112223334431  22221      1112222222111    00   0


Q ss_pred             c------h-------------------------------HHHHHHHhCcHHHHHHhcCCCCh--hhHHHHHHHHhhhhcC
Q 037142          134 N------D-------------------------------EIQAVIEAGVCPRLVKLLGHPSQ--SVLTQALHTVGNIARG  174 (383)
Q Consensus       134 ~------~-------------------------------~~~~~~~~~~i~~l~~~L~~~~~--~v~~~a~~~L~~l~~~  174 (383)
                      .      +                               +-+.+. .++++.+.+++..+++  ........++-.|...
T Consensus      1957 ~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~ 2035 (2235)
T KOG1789|consen 1957 TVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRH 2035 (2235)
T ss_pred             cccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHh
Confidence            0      0                               000111 1345666666655332  2333333444555566


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      .+...+++-..|.+|.++..+... +..+-..|++++..++.+. ...+.+.....+..++..|...- ....-|+.+|-
T Consensus      2036 hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2036 HPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALK 2112 (2235)
T ss_pred             CcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHH
Confidence            777777788889999999999887 7777799999999997654 66777777777777888776543 23337788888


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCC-------HHHHHHHHHHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPD-------PQIVTVCLKALENIL  300 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------~~v~~~al~~l~~l~  300 (383)
                      .+......+.....++.|+++.|+.+|+...       ...+.....+|...+
T Consensus      2113 R~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk~~~ 2165 (2235)
T KOG1789|consen 2113 RLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALKSAI 2165 (2235)
T ss_pred             HHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHHHHH
Confidence            8876655566666678999999999998532       233444455554444

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=9.6e-05  Score=68.26  Aligned_cols=278  Identities=14%  Similarity=0.132  Sum_probs=171.4

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      .+-+-| .+.|+....-|+.+++|+....      .....-+-+-+++-+.+  .-+++.++.|+..|.+. .++.+.. 
T Consensus       115 ~iknDL-~srn~~fv~LAL~~I~niG~re------~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~-spDl~~~-  185 (938)
T KOG1077|consen  115 SIKNDL-SSRNPTFVCLALHCIANIGSRE------MAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRK-SPDLVNP-  185 (938)
T ss_pred             HHHhhh-hcCCcHHHHHHHHHHHhhccHh------HHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhc-CccccCh-
Confidence            344444 4567888889999999988653      22223344446776554  67889999999999987 5443332 


Q ss_pred             HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc-----------------cccchhH
Q 037142          141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-----------------DNHKTSI  203 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~-----------------~~~~~~~  203 (383)
                        .+..++++++|.+.+-.+..++...+-.++...++...     +.++.-+.-|.                 -+ .|.+
T Consensus       186 --~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP-~PWL  257 (938)
T KOG1077|consen  186 --GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVP-APWL  257 (938)
T ss_pred             --hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCC-ChHH
Confidence              35678999999999999999999999999877665433     22332222221                 13 6788


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcC--ch-----hHHHHHHHHHHHhcCCC--CHHHHHHHHHcCC
Q 037142          204 KNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNA--VF-----YIKKEAAWAISNATFGG--THEQIKYLEREGC  273 (383)
Q Consensus       204 ~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~--~~-----~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~  273 (383)
                      +...++.|.++-.. ++..+..+.+  +++.+....+.+  +.     ..+....+-..+++.+-  .++....     .
T Consensus       258 ~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-----~  330 (938)
T KOG1077|consen  258 QVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-----A  330 (938)
T ss_pred             HHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-----H
Confidence            88999999888432 2233333322  333333333311  11     22222233334444332  2232222     6


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHH
Q 037142          274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILE  352 (383)
Q Consensus       274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~  352 (383)
                      +..|.+++.+.++.+|.-++..++.++.....              ...+...  .+.+...+. .++-.|+++|.++|.
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--------------~davK~h--~d~Ii~sLkterDvSirrravDLLY  394 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASSEFS--------------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLY  394 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhccch--------------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHH
Confidence            78899999999999999999999888875321              1122222  234444444 788889999999999


Q ss_pred             HhcCCCCC----CCCcccccccccccchhhhc
Q 037142          353 TYWCGRVV----GPQPGLLYAGNEENEEEDAL  380 (383)
Q Consensus       353 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  380 (383)
                      .+.+.++.    +.+-+.+..++..+|++-+.
T Consensus       395 ~mcD~~Nak~IV~elLqYL~tAd~sireeivl  426 (938)
T KOG1077|consen  395 AMCDVSNAKQIVAELLQYLETADYSIREEIVL  426 (938)
T ss_pred             HHhchhhHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            98888763    33334444566666655443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.33  E-value=0.00014  Score=64.67  Aligned_cols=239  Identities=15%  Similarity=0.111  Sum_probs=171.9

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhhhcCCCc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....+.+..++-+++.+++..+..++..+..+  .+..+.+.+.++--.++..|..+  +..=+.+|++.++.+......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            33444555455555599999999999999987  67778888877766677777664  344567999999999865332


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                       .+ .+..|++..++.+..+. ++.++..|+.++..++-.+|+.   +...|++..|.+.+.++..++....+.++..+.
T Consensus       102 -~~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  102 -PK-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             -cc-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence             12 34668999999999998 9999999999999999877653   467999999999998887778888999999998


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhcCCC-------CH--HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhcc
Q 037142          258 FGGTHEQIKYLEREGCIKPLCDLLLCP-------DP--QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKG  328 (383)
Q Consensus       258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (383)
                      ..  +...+++...--+..++.-+.+.       +.  +-...+..++..+++.-++.-..            -..+..+
T Consensus       176 d~--p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l------------~~~~~~~  241 (371)
T PF14664_consen  176 DS--PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL------------SMNDFRG  241 (371)
T ss_pred             CC--cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee------------ecCCchH
Confidence            76  55566554433344444433222       22  24455677777777653322110            0112246


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          329 LEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       329 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      ++.|.+.+..|+.++++...+++..+|.-...
T Consensus       242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p  273 (371)
T PF14664_consen  242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP  273 (371)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence            77788889999999999999999999887653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.33  E-value=3.9e-06  Score=70.24  Aligned_cols=191  Identities=14%  Similarity=0.094  Sum_probs=121.6

Q ss_pred             CCCChHHHHHHHHHHHHHhcCC--hHHHHHHHh--cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142           27 ASPSDDIRMQSVWALGNIAAES--PRFRDLVLG--EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC  102 (383)
Q Consensus        27 ~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~--~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  102 (383)
                      .+.+++.|..|+.-|..+....  ......+..  ..++..+...+ ++....+...|+.++..++......-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5689999999999999988654  222232221  14556777777 566778999999999999876533333345789


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYI  182 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  182 (383)
                      +|.|++.+.++...++..+..+|..++.. .+ ....+    ..+.+...+.+.++.++..++..+..+....+.....+
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~-~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIES-CS-YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTT-S--H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHH-CC-cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            99999999999999999999999999987 33 11111    25677788899999999999999999986655222223


Q ss_pred             ecC----CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHH
Q 037142          183 INC----GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAV  225 (383)
Q Consensus       183 ~~~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~  225 (383)
                      -..    .+++.+...+.+. ++.+|..|-.++..+....++....+
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~  215 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESI  215 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred             cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccc
Confidence            222    3677788888888 99999999999988865544444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.31  E-value=6.3e-05  Score=72.07  Aligned_cols=302  Identities=17%  Similarity=0.131  Sum_probs=196.6

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      ++.+..++++...+.+..++.-...++. .+......+....+++.+-.+. .+.+..++...+..+..+.--.+  ...
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~  433 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KER  433 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCc
Confidence            3444445555445555555444444442 1112223333344455555555 56677777766665555543322  223


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      .+....|.....+++.++.++.+..+.+..+-...+........+ ..+|.+..+-.+...+++.+.++.+..++.... 
T Consensus       434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-  511 (759)
T KOG0211|consen  434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-  511 (759)
T ss_pred             CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence            456788899999999999999999988766554423344444444 377888888888889999999999999885544 


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                        ..+++...-+.+...+.+. ...+++.|...+..++....   ..-.....++.+.....++++..|...+.++.-++
T Consensus       512 --~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la  585 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA  585 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence              2244444555666666666 77899999998888875322   11122345667777776778889998888888776


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142          258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR  337 (383)
Q Consensus       258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~  337 (383)
                      ...+.+    +....+++.+.++..+..+.|+..+++.+..+...-...                ..+.-..+.++.+..
T Consensus       586 ~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~  645 (759)
T KOG0211|consen  586 EVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSS  645 (759)
T ss_pred             HHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhcc
Confidence            543322    233347999999999999999999999999888754432                233444566777777


Q ss_pred             CCCHHHHHHHHHHH
Q 037142          338 HDNYEIHEKSAKIL  351 (383)
Q Consensus       338 ~~~~~v~~~a~~~l  351 (383)
                      +++-+++..|..+.
T Consensus       646 d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  646 DQELDVRYRAILAF  659 (759)
T ss_pred             CcccchhHHHHHHH
Confidence            77777777766544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=0.00022  Score=60.11  Aligned_cols=263  Identities=15%  Similarity=0.132  Sum_probs=186.1

Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----hHHHHHHHhCcHHHHHHhcC
Q 037142           79 IATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN----DEIQAVIEAGVCPRLVKLLG  154 (383)
Q Consensus        79 ~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~i~~l~~~L~  154 (383)
                      -++.+|-.+....  .......+..|.|..-+..++..++.-+|..+..+..+ .+    ..+..++..++++.++.++.
T Consensus        62 lcVscLERLfkak--egahlapnlmpdLQrGLiaddasVKiLackqigcilEd-cDtnaVseillvvNaeilklildcIg  138 (524)
T KOG4413|consen   62 LCVSCLERLFKAK--EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED-CDTNAVSEILLVVNAEILKLILDCIG  138 (524)
T ss_pred             hHHHHHHHHHhhc--cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc-CchhhHHHHHHHhhhhHHHHHHHHHc
Confidence            3677777777643  22334567778888888888889999999988888876 33    33445667899999999999


Q ss_pred             CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH--hhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142          155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG--LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG  232 (383)
Q Consensus       155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~--ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  232 (383)
                      .+|.+|...+...+..++.... ....+++....+.+-.  +.... +.-.|...+..+-.+.+-++......-..|.+.
T Consensus       139 geddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLld  216 (524)
T KOG4413|consen  139 GEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLD  216 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence            9999999999999999986544 3444666666654432  22333 667788888888888888888888888899999


Q ss_pred             HHHHHhhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccC
Q 037142          233 PLVNLLQN-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNT  309 (383)
Q Consensus       233 ~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~  309 (383)
                      .|..=|.. .+.-++..+......++..  ....+++.+.|+++.+++.+.  +.+|--+..++-....++....-... 
T Consensus       217 lLeaElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv-  293 (524)
T KOG4413|consen  217 LLEAELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV-  293 (524)
T ss_pred             HHHHHhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc-
Confidence            88888876 5777888888888888765  556778888999999999886  44555555566666666644322211 


Q ss_pred             cCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          310 DTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       310 ~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                           .....++.+.  -.++.-.++.+..+++..+.|.+.+-.+=.
T Consensus       294 -----seeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  294 -----SEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS  333 (524)
T ss_pred             -----CHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence                 1112222221  134555677788888888888887765433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=0.00012  Score=70.68  Aligned_cols=303  Identities=12%  Similarity=0.090  Sum_probs=197.1

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      |.++.+..++.. .+++++..|+..+..++.. .++...+...|.+..|+.+|.  .-+..+..++.+|.-+++......
T Consensus      1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLH--S~PS~R~~vL~vLYAL~S~~~i~k 1847 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLH--SQPSMRARVLDVLYALSSNGQIGK 1847 (2235)
T ss_pred             cccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHh--cChHHHHHHHHHHHHHhcCcHHHH
Confidence            788888888875 8899999999998888764 478888889999999999993  356789999999999998754434


Q ss_pred             hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCC---CchHHH----------HHHHhCcHHHHHHhcCC--CCh-
Q 037142           96 FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGG---KNDEIQ----------AVIEAGVCPRLVKLLGH--PSQ-  158 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~---~~~~~~----------~~~~~~~i~~l~~~L~~--~~~-  158 (383)
                      .....|++..+..++- ++.++.+.+++..+..+..++   +.-.+.          ..... .-+..++.+..  ++| 
T Consensus      1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPE 1926 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPE 1926 (2235)
T ss_pred             HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcc
Confidence            4455777777776665 567899999999999988652   110110          11111 12445555543  222 


Q ss_pred             -----hhHHHHHHHHhhhhcC-------CCcc-------------------------ccceec------------CCChH
Q 037142          159 -----SVLTQALHTVGNIARG-------DYSQ-------------------------TLYIIN------------CGALP  189 (383)
Q Consensus       159 -----~v~~~a~~~L~~l~~~-------~~~~-------------------------~~~l~~------------~~~i~  189 (383)
                           ..+......+..++..       ++..                         ...+.+            .+.++
T Consensus      1927 LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLe 2006 (2235)
T KOG1789|consen 1927 LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLE 2006 (2235)
T ss_pred             cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHH
Confidence                 2233333334433310       0000                         000000            12244


Q ss_pred             HHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037142          190 YLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL  268 (383)
Q Consensus       190 ~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l  268 (383)
                      .+.+++..+. +...-.--..++-.+....+...+.+-..|-+|.++..+...+..+-+.|..+|..++.+  .-....+
T Consensus      2007 k~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AM 2084 (2235)
T KOG1789|consen 2007 KVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN--QFCCDAM 2084 (2235)
T ss_pred             HHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHH
Confidence            4555554331 222222233344455566677777777889999999999887777778999999999987  4667777


Q ss_pred             HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          269 EREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       269 ~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                      .....+..++..++... +..--|+.+|.+++......           -..+.+ .+|.++.|..|++.
T Consensus      2085 A~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~e-----------LVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGE-----------LVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred             hccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHH-----------HHHHHh-ccCcHHHHHHHhcc
Confidence            77777888888776443 33447889999998743322           234444 78899999888774

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=3.2e-06  Score=75.30  Aligned_cols=146  Identities=11%  Similarity=0.069  Sum_probs=121.9

Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      .-..+++.+|..++.........+.+..+.+.|+++|+.+ +..+...+...+.|.+..-......++..+++..++.++
T Consensus       404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v  482 (743)
T COG5369         404 LDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV  482 (743)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh
Confidence            3445667777777765555555677888999999999988 888888899999998876667778888999999999999


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      .+.+..++....|++.++..++.....-.++...++..++++..+++..++.+++..+.|+.....+
T Consensus       483 ~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~k  549 (743)
T COG5369         483 MSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSK  549 (743)
T ss_pred             hcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccc
Confidence            9999999999999999999987555455556778899999999999999999999999999985554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=3.1e-05  Score=72.29  Aligned_cols=182  Identities=16%  Similarity=0.177  Sum_probs=116.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      ++++.+++=.++++|.+|..|++.++.+--+  ...+.+     ..++.+.+ ++.++.++..+..+..++-..+  .+.
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey~-----~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~--~~~  155 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEYL-----CDPLLKCL-KDDDPYVRKTAAVCVAKLFDID--PDL  155 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHHH-----HHHHHHhc-cCCChhHHHHHHHHHHHhhcCC--hhh
Confidence            4667777777889999999999988876532  333333     57889999 6888999999999999988764  344


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      ....|+++.|..++.++++.+..+|+.++..+... .............+..++..+..-+..-+...+.++.+....++
T Consensus       156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~-~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~  234 (734)
T KOG1061|consen  156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHES-HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS  234 (734)
T ss_pred             ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh-CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence            55689999999999999999999999999999976 32111111111233444444444445555555555555443332


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      ...+     .++..+...+.+. ++.+...+..++.++.
T Consensus       235 ~ea~-----~i~~r~~p~Lqh~-n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  235 REAE-----DICERLTPRLQHA-NSAVVLSAVKVILQLV  267 (734)
T ss_pred             hhHH-----HHHHHhhhhhccC-CcceEeehHHHHHHHH
Confidence            1111     2344444455554 4444444554444444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=1.1e-05  Score=73.64  Aligned_cols=219  Identities=15%  Similarity=0.139  Sum_probs=143.2

Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC--Cc--h-HHH
Q 037142           64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG--KN--D-EIQ  138 (383)
Q Consensus        64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--~~--~-~~~  138 (383)
                      ++.+. .+.+..++.+|+..+..|....     ...........+++.+++..+|..|...+.......  +.  + .-.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44554 5667777777777777766532     122335666778889999999999876665544331  11  1 111


Q ss_pred             HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH-HHHHHHHH--h
Q 037142          139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY-ACWIISNI--T  215 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~-a~~~l~nl--~  215 (383)
                      .+.+. .+..+.+.+.+-+..|+..|.++|+.+-.-+++...+.++..++    +-+...   ..... .-...++.  +
T Consensus       277 kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlm----s~lRRk---r~ahkrpk~l~s~GewS  348 (823)
T KOG2259|consen  277 KLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLM----SRLRRK---RTAHKRPKALYSSGEWS  348 (823)
T ss_pred             hhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHh----hhhhhh---hhcccchHHHHhcCCcc
Confidence            23333 67888999999999999999999998876666544444433222    211110   11111 11111111  1


Q ss_pred             c-----------CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC
Q 037142          216 A-----------GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP  284 (383)
Q Consensus       216 ~-----------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  284 (383)
                      .           ..++....++.+|.-..++.-+.+.-.+||+.|+..++.++.+ ++.....     .+..|++++.++
T Consensus       349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE  422 (823)
T KOG2259|consen  349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDE  422 (823)
T ss_pred             cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccH
Confidence            0           1123445566788888888888888999999999999999986 3454444     588999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 037142          285 DPQIVTVCLKALENILKV  302 (383)
Q Consensus       285 ~~~v~~~al~~l~~l~~~  302 (383)
                      ...|+..|+.+|..+...
T Consensus       423 ~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999888865

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00028  Score=65.35  Aligned_cols=260  Identities=13%  Similarity=0.088  Sum_probs=166.7

Q ss_pred             HhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142           24 KLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKPRPIFDQVRPC  102 (383)
Q Consensus        24 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  102 (383)
                      +=|.+.|+.-+..|+.+++|+.+  .+.++.+.     +.+-++|-+.. ..-++..++-+|..|.+..|.  .....+-
T Consensus       118 nDL~srn~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--l~~~~~W  188 (938)
T KOG1077|consen  118 NDLSSRNPTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--LVNPGEW  188 (938)
T ss_pred             hhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc--ccChhhH
Confidence            33455777888889999999874  35555553     23335663333 345677888888888887543  3334566


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-------------CCChhhHHHHHHHHh
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-------------HPSQSVLTQALHTVG  169 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-------------~~~~~v~~~a~~~L~  169 (383)
                      +..++.++.+.+..+...+...+..++.. .++........ .+..|.....             -+.|.+....++.|.
T Consensus       189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~-~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq  266 (938)
T KOG1077|consen  189 AQRIVHLLDDQHMGVVTAATSLIEALVKK-NPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQ  266 (938)
T ss_pred             HHHHHHHhCccccceeeehHHHHHHHHHc-CCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHH
Confidence            78899999999999999999999999987 66555543322 2333333221             167888999999998


Q ss_pred             hhhcCCCccccceecCCChHHHHHhhcccc---------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142          170 NIARGDYSQTLYIINCGALPYLLGLLIDNH---------KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~---------~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                      ++-.-.+....    ....+.+-.+|...+         +...+...++-.-+++.+-+..-+.+  ......|.+++.+
T Consensus       267 ~~p~~~D~~~r----~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~  340 (938)
T KOG1077|consen  267 IYPTPEDPSTR----ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSH  340 (938)
T ss_pred             hCCCCCCchHH----HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhc
Confidence            87422221111    112223333332110         22334445555556655433333333  2357788999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ....+|.-|...++.++...  ..... ++.. ...++..|+ .+|..++..|+..|+-++....
T Consensus       341 rE~NiRYLaLEsm~~L~ss~--~s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  341 RETNIRYLALESMCKLASSE--FSIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             ccccchhhhHHHHHHHHhcc--chHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence            99999999999999999873  22222 2222 778888888 7799999999999999986544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1.9e-05  Score=72.25  Aligned_cols=246  Identities=14%  Similarity=0.143  Sum_probs=147.3

Q ss_pred             HHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHH---HHHHhhcCCC---CCCC
Q 037142           22 FVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIAT---WTLSNLCGGK---PRPI   95 (383)
Q Consensus        22 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~---~~L~~l~~~~---~~~~   95 (383)
                      +..+..+.|+.++.+|+..|..+... ....+.+     ....++++ ++.+..++..|+   |..+|.+-.+   ....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~-----Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKAC-----YSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccc-ccccHHH-----HHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            34444445555555555555444431 1222222     34567777 677788888774   5556666222   1122


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHhhhh--
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-HPSQSVLTQALHTVGNIA--  172 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-~~~~~v~~~a~~~L~~l~--  172 (383)
                      ....-.++..+...+.+-...+|..|+.+|+.+-.- +.+.+....+..++..+-..-. +.-+.-.    ..=+..+  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l----~s~GewSsG  350 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKAL----YSSGEWSSG  350 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHH----HhcCCcccC
Confidence            334456777888888888999999999999887765 4455555444333331111100 0111111    0001011  


Q ss_pred             ---------cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142          173 ---------RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       173 ---------~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                               ...+.....++..|.-..++.-+.+. -.+||.+|+..++.|+..++.....     .+..|++++++...
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHH
Confidence                     11222334467778888899988888 8899999999999999988776654     46689999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC  292 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  292 (383)
                      .||..|..+|..++.+..       ++...++.++..|.+.++++++..
T Consensus       425 ~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l  466 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREAL  466 (823)
T ss_pred             HHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999988876531       112234445555555555555433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.18  E-value=2.6e-05  Score=75.93  Aligned_cols=233  Identities=15%  Similarity=0.125  Sum_probs=154.4

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC----
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAA---ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG----   89 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~----   89 (383)
                      .++|.++.++.++..++|..|+.+|..+..   +-+..-..+...=++|.|-.++.++....++..-+..|+.|+.    
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r  541 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR  541 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence            579999999999999999999999988753   1111112222233467777777433444444443444444321    


Q ss_pred             --------------CCCCC---C--------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC
Q 037142           90 --------------GKPRP---I--------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG  144 (383)
Q Consensus        90 --------------~~~~~---~--------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  144 (383)
                                    +.+..   .        ......+-.....++.++++-+++..+..|.-||..+......    .-
T Consensus       542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN----D~  617 (1431)
T KOG1240|consen  542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN----DV  617 (1431)
T ss_pred             HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc----cc
Confidence                          11111   0        0111334444556777778888888888888888542111111    13


Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      +++.|+.+|.+.|+.++.+-...|..++-.-.   ..-.+..++|.|.+-|.+. .+.|...|++++.-++...--.+..
T Consensus       618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~  693 (1431)
T KOG1240|consen  618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPA  693 (1431)
T ss_pred             hHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHH
Confidence            78899999999999999888887776653322   1124557889999999998 9999999999999998644222222


Q ss_pred             HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      +  ..+++....++-+++..+|..++.+|......
T Consensus       694 v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  694 V--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             H--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            2  33566777788899999999999999888754

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00041  Score=62.89  Aligned_cols=286  Identities=12%  Similarity=0.177  Sum_probs=162.2

Q ss_pred             CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHH
Q 037142           27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTL  106 (383)
Q Consensus        27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l  106 (383)
                      ++.-+.++..+++.+..++..+  ...... ...+..|-.+| +++....+-.|+++|..++...|...    ..+=+-+
T Consensus       274 s~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv----~vcN~ev  345 (898)
T COG5240         274 SDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV----SVCNKEV  345 (898)
T ss_pred             cCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----eecChhH
Confidence            3344678888888888877543  111111 12355666667 67788888899999999988765432    2233445


Q ss_pred             HHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCC
Q 037142          107 AQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG  186 (383)
Q Consensus       107 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  186 (383)
                      -.++.+.+..+...|+..|..-.   ..+.+..++.  .++.+++=+.++-..+...+++.|+..   .+....     .
T Consensus       346 EsLIsd~Nr~IstyAITtLLKTG---t~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~---Fp~k~~-----s  412 (898)
T COG5240         346 ESLISDENRTISTYAITTLLKTG---TEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLL---FPSKKL-----S  412 (898)
T ss_pred             HHHhhcccccchHHHHHHHHHcC---chhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhh---CcHHHH-----H
Confidence            56777777777666665554433   4456665543  244555544444444444444444433   332211     3


Q ss_pred             ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 037142          187 ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIK  266 (383)
Q Consensus       187 ~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~  266 (383)
                      .+..|...|.+...-+.+..++.+++.+....|+.++..     +..|...+.+.  +..+-++..|+-+...+....- 
T Consensus       413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~-  484 (898)
T COG5240         413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRAKT-  484 (898)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC-
Confidence            355555555444366778888888888877766666544     33455555432  2223344444444433210000 


Q ss_pred             HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          267 YLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       267 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                         ....+.++.+-+--++.-++..|+.||..+.-....-                +........|.+++++++++|+++
T Consensus       485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~DdeVRdr  545 (898)
T COG5240         485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQDDEVRDR  545 (898)
T ss_pred             ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhcccHHHHHH
Confidence               0112333333333456678888888887776432221                112233467789999999999999


Q ss_pred             HHHHHHHhcCCCCC
Q 037142          347 SAKILETYWCGRVV  360 (383)
Q Consensus       347 a~~~l~~~~~~~~~  360 (383)
                      |.-.+..+-..+.-
T Consensus       546 Asf~l~~~~~~da~  559 (898)
T COG5240         546 ASFLLRNMRLSDAC  559 (898)
T ss_pred             HHHHHHhhhhhhhh
Confidence            99888876654443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.15  E-value=4.4e-05  Score=63.86  Aligned_cols=230  Identities=15%  Similarity=0.110  Sum_probs=149.3

Q ss_pred             CCCChHHHHHHHHHHHHHhcCChHHHHHHH-hcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCC-Chhhhhchh
Q 037142           27 ASPSDDIRMQSVWALGNIAAESPRFRDLVL-GEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRP-IFDQVRPCL  103 (383)
Q Consensus        27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i  103 (383)
                      +.-++-.+.-|+.++.++... ++.|+..- +...-..++..++++ .+.+++...+.++..+...+... .....-..+
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli  237 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            334455677888999998865 46665543 333445677777433 25778888888888888765222 122234566


Q ss_pred             HHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHhhhhcC-----
Q 037142          104 PTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---PSQSVLTQALHTVGNIARG-----  174 (383)
Q Consensus       104 ~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~-----  174 (383)
                      ..++++.+.. ...+.+-++..+.+++...+...+....-.|-+...++.|..   .|.+++...-..=..+..+     
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            6677777644 577888899999999974133445544444434455555543   4555544332222111111     


Q ss_pred             -----------------CCccc--------cceec--CCChHHHHHhhccccchh-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037142          175 -----------------DYSQT--------LYIIN--CGALPYLLGLLIDNHKTS-IKNYACWIISNITAGNREQIQAVI  226 (383)
Q Consensus       175 -----------------~~~~~--------~~l~~--~~~i~~l~~ll~~~~~~~-~~~~a~~~l~nl~~~~~~~~~~~~  226 (383)
                                       +++..        ..+.+  ..+++.|..+++.. ++. ....||.-+..++...|+....+.
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                             11111        11111  13577888888887 555 566788889999999999999999


Q ss_pred             hcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          227 DAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       227 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      +.|+=..++++++|++++||-+|..++..+..
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999877653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00019  Score=66.81  Aligned_cols=93  Identities=14%  Similarity=0.092  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      .+.|..-..++..++.. -++....     +++.|++.+.+.++..-...+..+...++..++.+             ..
T Consensus       373 ~~yRqlLiktih~cav~-Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~  433 (948)
T KOG1058|consen  373 GKYRQLLIKTIHACAVK-FPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------AS  433 (948)
T ss_pred             hHHHHHHHHHHHHHhhc-ChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HH
Confidence            34455666666666554 2333333     68888888888877666666666666665444321             11


Q ss_pred             HHHhccHHHH-HHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          323 VEEAKGLEKI-ENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       323 l~~~~~~~~L-~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      +     +++| +.+-.-...++.+-|.+++-.|.+...
T Consensus       434 i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  434 I-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             H-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            1     1222 222333566677777777777777665

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.13  E-value=0.00086  Score=59.75  Aligned_cols=219  Identities=24%  Similarity=0.289  Sum_probs=156.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      -.++.+..++.+.++.+|..|+.+|+.+-..           ..++.++.++..+++..++..+.++|+.+-...     
T Consensus        74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----  137 (335)
T COG1413          74 EAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----  137 (335)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----
Confidence            4688999999999999999999988887632           347889999955789999999999999987643     


Q ss_pred             hhhhchhHHHHHhhccCC------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142           97 DQVRPCLPTLAQLVHSND------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA  164 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a  164 (383)
                           .+..+...+.+..            ..++..+...+..+-..            ..++.+...+.+.+..++..+
T Consensus       138 -----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~------------~~~~~l~~~l~~~~~~vr~~A  200 (335)
T COG1413         138 -----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP------------EAIPLLIELLEDEDADVRRAA  200 (335)
T ss_pred             -----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh------------hhhHHHHHHHhCchHHHHHHH
Confidence                 3666667766654            13555555555555533            357888999999999999999


Q ss_pred             HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      ..+|+.+....         ..+.+.+...+.+. +..++..++..++.+-...           ..+.+...+...+..
T Consensus       201 a~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~  259 (335)
T COG1413         201 ASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAALLALGEIGDEE-----------AVDALAKALEDEDVI  259 (335)
T ss_pred             HHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccCcch-----------hHHHHHHHHhccchH
Confidence            99999887554         24567888888888 9999999999998875422           345667777777777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      ++..+.......-.            ......+...+.+....++..+..++..+..
T Consensus       260 ~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         260 LALLAAAALGALDL------------AEAALPLLLLLIDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             HHHHHHHHhcccCc------------hhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence            77666666551110            0123445555555666666666666655543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00057  Score=64.16  Aligned_cols=275  Identities=18%  Similarity=0.154  Sum_probs=184.7

Q ss_pred             hHHHHHHhcCCCChhHHHHHHH-HHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142           61 LIPLLTQLNNHENLSMKRIATW-TLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA  139 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (383)
                      -..|.++| ++.....+..|+. +++.++.+.      ..+..+|.+++...+++.++++-+---|...++. .+ +...
T Consensus        37 ~~dL~~lL-dSnkd~~KleAmKRIia~iA~G~------dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-qp-dLAL  107 (968)
T KOG1060|consen   37 HDDLKQLL-DSNKDSLKLEAMKRIIALIAKGK------DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-QP-DLAL  107 (968)
T ss_pred             hHHHHHHH-hccccHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-CC-Ccee
Confidence            35688899 5555555556655 555566553      2677999999999999999999998888888876 22 2222


Q ss_pred             HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142          140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR  219 (383)
Q Consensus       140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~  219 (383)
                      +    -+..+-+-|+++|+.++..|+++|..+=-      . ++..-.+-.+-++..+. .+.||+.|+.++-.+=.-.+
T Consensus       108 L----SIntfQk~L~DpN~LiRasALRvlSsIRv------p-~IaPI~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd~  175 (968)
T KOG1060|consen  108 L----SINTFQKALKDPNQLIRASALRVLSSIRV------P-MIAPIMLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLDP  175 (968)
T ss_pred             e----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------h-hHHHHHHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCCh
Confidence            2    36788899999999999999988876521      0 11111223334455566 89999999999999877666


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037142          220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI  299 (383)
Q Consensus       220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l  299 (383)
                      +....+     +..+-.+|.+.++.|...|+.+.-.+|    ++....+..  -...|+.++.+-+.--|...+..|.+.
T Consensus       176 e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIHk--nyrklC~ll~dvdeWgQvvlI~mL~RY  244 (968)
T KOG1060|consen  176 EQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIHK--NYRKLCRLLPDVDEWGQVVLINMLTRY  244 (968)
T ss_pred             hhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhhH--HHHHHHhhccchhhhhHHHHHHHHHHH
Confidence            666544     446777888999999999999998887    455665543  578899999887776677788888887


Q ss_pred             HHhchhcccCcC-----------------CCCcc---cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          300 LKVGEAEKNTDT-----------------DIGDV---NQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       300 ~~~~~~~~~~~~-----------------~~~~~---~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ++..-.......                 .+..+   +.-.++|     ++....|+.+.++.|...+.++...+....+
T Consensus       245 AR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL-----L~stkpLl~S~n~sVVmA~aql~y~lAP~~~  319 (968)
T KOG1060|consen  245 ARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL-----LQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ  319 (968)
T ss_pred             HHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH-----HHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence            764322210000                 00011   1112222     2445567778888888888877776666654


Q ss_pred             C----CCCccccccccc
Q 037142          360 V----GPQPGLLYAGNE  372 (383)
Q Consensus       360 ~----~~~~~~~~~~~~  372 (383)
                      .    +++.+++|+-.+
T Consensus       320 ~~~i~kaLvrLLrs~~~  336 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSNRE  336 (968)
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            3    667777766443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.10  E-value=9.3e-06  Score=56.59  Aligned_cols=87  Identities=26%  Similarity=0.356  Sum_probs=70.5

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      ++.|++.|.+++++.++..++++|+.+.          ....++.+..+++++++.++..++++|..+...         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~---------   61 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGDP---------   61 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---------
Confidence            5789999967889999999999999543          235799999999999999999999999987522         


Q ss_pred             HHhCcHHHHHHhcCCCC-hhhHHHHHHHHh
Q 037142          141 IEAGVCPRLVKLLGHPS-QSVLTQALHTVG  169 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~-~~v~~~a~~~L~  169 (383)
                         ..++.|.+++.+++ ..++..+..+|+
T Consensus        62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 ---EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               36889999998854 556888888774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.09  E-value=1.1e-05  Score=56.18  Aligned_cols=87  Identities=29%  Similarity=0.420  Sum_probs=70.5

Q ss_pred             hHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccc
Q 037142          103 LPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY  181 (383)
Q Consensus       103 i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  181 (383)
                      +|.|++.+ +++++.++..++++|+.+...            ..++.+..+++++++.++..++.+|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57888888 788999999999999855321            25799999999999999999999999873         


Q ss_pred             eecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          182 IINCGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                        ....++.|..++.++.+..+|..|+.+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12468899999988746677999988875

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.09  E-value=0.00055  Score=65.32  Aligned_cols=138  Identities=19%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR  100 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  100 (383)
                      -+++...+.|.+++...-.-|.+++...|+....     .+..+.+-+ +++|+.+|..|+++++.+-..      ....
T Consensus        59 dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl-~d~N~~iR~~AlR~ls~l~~~------el~~  126 (757)
T COG5096          59 DVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDL-QDPNEEIRGFALRTLSLLRVK------ELLG  126 (757)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhc-cCCCHHHHHHHHHHHHhcChH------HHHH
Confidence            3344444556666666666666666555532222     245666677 789999999999999886543      5668


Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .+++.+.+++.++++.+|+.|+.++..+-+- ++   ..+.+.|.+..+..++.++||.+...|+.++..+...
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            8999999999999999999999999999966 33   3344557888888899999999999999999988643

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=98.09  E-value=1.1e-05  Score=46.89  Aligned_cols=39  Identities=41%  Similarity=0.744  Sum_probs=36.8

Q ss_pred             hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 037142            7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIA   45 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~   45 (383)
                      ++++..+++.|+++.|++++.+++++++..|+|+|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            468899999999999999999999999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.08  E-value=4.7e-05  Score=63.72  Aligned_cols=182  Identities=17%  Similarity=0.137  Sum_probs=118.5

Q ss_pred             cCCCChhHHHHHHHHHHhhcCCC-CCCChhh----hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh
Q 037142           69 NNHENLSMKRIATWTLSNLCGGK-PRPIFDQ----VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA  143 (383)
Q Consensus        69 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~----~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  143 (383)
                      .++.+.+.+..++.-|..++... +......    ...++..+...+.+....+...++.++..++.. .........+.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~-l~~~~~~~~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ-LGSHFEPYADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH-HGGGGHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhHhHHHHHHH
Confidence            35678899999999999988776 2221111    234556777788888889999999999999976 44445555554


Q ss_pred             CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC-hHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142          144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA-LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI  222 (383)
Q Consensus       144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~  222 (383)
                       ++|.|+..+.+++..++..+..+|..++...+..      ..+ ++.+.....+. ++.+|..++..+..+....+...
T Consensus        95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----
T ss_pred             -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchH
Confidence             8899999999999999999999999998755411      123 56666777788 99999999999998876554111


Q ss_pred             HHHH----hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          223 QAVI----DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       223 ~~~~----~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      ..+-    -..+.+.+...+.++++++|..|-.++..+...
T Consensus       167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            1111    134677888889999999999998888887544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.0011  Score=54.31  Aligned_cols=255  Identities=17%  Similarity=0.241  Sum_probs=161.7

Q ss_pred             hHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           19 VPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        19 i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      +..+.+.|..  ....-+..|+..|.++...           +.+..+.+.. .+.+...+...+.+|+......     
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~~-----   67 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAF-IDDSALLKHELAYVLGQMQDED-----   67 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhc-ccchhhhccchhhhhhhhccch-----
Confidence            3445555543  2334455566666666532           2255566665 3445667778888888877543     


Q ss_pred             hhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           97 DQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                           .+|.+...+.+.  .+-+|..+..+|..+...            ...+.+-++.+++...|+..+..++..+-..
T Consensus        68 -----Av~~l~~vl~desq~pmvRhEAaealga~~~~------------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~  130 (289)
T KOG0567|consen   68 -----AVPVLVEVLLDESQEPMVRHEAAEALGAIGDP------------ESLEILTKYIKDPCKEVRETCELAIKRLEWK  130 (289)
T ss_pred             -----hhHHHHHHhcccccchHHHHHHHHHHHhhcch------------hhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence                 788899888855  478889999999988833            3456666777777777777777777666421


Q ss_pred             CCcc----cccee--------cCCChHHHHHhhc-cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142          175 DYSQ----TLYII--------NCGALPYLLGLLI-DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA  241 (383)
Q Consensus       175 ~~~~----~~~l~--------~~~~i~~l~~ll~-~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  241 (383)
                      +.-.    ...+.        ..+-+..+-..+. .+...--|..+.+.|.|+..  ++.         +..+.+-+..+
T Consensus       131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~  199 (289)
T KOG0567|consen  131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EEA---------INALIDGLADD  199 (289)
T ss_pred             hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HHH---------HHHHHHhcccc
Confidence            1100    00011        1122333333333 33123345667777777632  232         33445556667


Q ss_pred             chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142          242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY  319 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  319 (383)
                      +.-.|.+++++++++-+..            .++.|.+.|.  .+++-+|..|..||.-+.                   
T Consensus       200 SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-------------------  248 (289)
T KOG0567|consen  200 SALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIA-------------------  248 (289)
T ss_pred             hHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc-------------------
Confidence            8889999999999997542            3666666654  357889999999998765                   


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                           ....++.|+++.+.+.+-|++.|.-.++-+
T Consensus       249 -----~e~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  249 -----DEDCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             -----CHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                 333467788999999999999998887643

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00076  Score=65.56  Aligned_cols=260  Identities=14%  Similarity=0.131  Sum_probs=164.9

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ++++.|...+++.|..++=.|+..++.++...| +..+     .++...++++..-++...-+.++-+|+.++... -..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-----~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLl  414 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-----QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLL  414 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-----HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccc
Confidence            577888888899999999999999999997655 2222     345666776643345666778999999999865 112


Q ss_pred             hhhhhchhHHHHHhhc--------cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142           96 FDQVRPCLPTLAQLVH--------SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT  167 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~  167 (383)
                      ......++|.+.+-+.        +....+|..||.+++.+++.+.+...+.+...-.-..+...+.+.+-+.+.+|..+
T Consensus       415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            2334567777777665        23468999999999999987333333433332122234455677888999999988


Q ss_pred             HhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHH-hhcCchhHH
Q 037142          168 VGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNL-LQNAVFYIK  246 (383)
Q Consensus       168 L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~  246 (383)
                      +....--..+..      .+++.+ .....- .-..+.++...+..-.+..+..++.++++     ++.. +.+=+..+|
T Consensus       495 lqE~VGR~~n~p------~Gi~Li-s~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ir  561 (1133)
T KOG1943|consen  495 LQENVGRQGNFP------HGISLI-STIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIR  561 (1133)
T ss_pred             HHHHhccCCCCC------Cchhhh-hhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHH
Confidence            876652211110      122221 222211 23345555666665555555666655543     2222 445588999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142          247 KEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       247 ~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~  300 (383)
                      ..++++|.+++..     ..+......++++++...+.+...+..+..+...++
T Consensus       562 elaa~aL~~Ls~~-----~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~  610 (1133)
T KOG1943|consen  562 ELAAYALHKLSLT-----EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI  610 (1133)
T ss_pred             HHHHHHHHHHHHh-----hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence            9999999998754     233344568888998888888776665544444443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.004  Score=58.75  Aligned_cols=314  Identities=16%  Similarity=0.201  Sum_probs=182.0

Q ss_pred             CccCCChHHHHHHH-------h--CC----ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHH
Q 037142            1 SIASKTLEDKKAVV-------D--HG----AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ   67 (383)
Q Consensus         1 n~~~~~~~~~~~~~-------~--~g----~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~   67 (383)
                      |+|+++.|.++.+.       +  .+    -|..|.+-|+++++.+|--|+++|..+=-       .++..=++-.+-++
T Consensus        79 NVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~  151 (968)
T KOG1060|consen   79 NVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKA  151 (968)
T ss_pred             HhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHH
Confidence            67888888776543       1  12    27788888899999999888888775531       11100001122233


Q ss_pred             hcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHH
Q 037142           68 LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCP  147 (383)
Q Consensus        68 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~  147 (383)
                      . .++.+-+|..|+.++-.+-.-.+.    ....++..+-.++.+.++-+.-.|..++..+|    ++..+.+-.  -..
T Consensus       152 ~-~D~s~yVRk~AA~AIpKLYsLd~e----~k~qL~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIHk--nyr  220 (968)
T KOG1060|consen  152 V-TDPSPYVRKTAAHAIPKLYSLDPE----QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIHK--NYR  220 (968)
T ss_pred             h-cCCcHHHHHHHHHhhHHHhcCChh----hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhhH--HHH
Confidence            3 677889999999999888765432    22367788888999999999999999999998    345555533  467


Q ss_pred             HHHHhcCCCChhhHHHHHHHHhhhhcCC---Cccccc----------------------eecCC---ChHHHHHhhcccc
Q 037142          148 RLVKLLGHPSQSVLTQALHTVGNIARGD---YSQTLY----------------------IINCG---ALPYLLGLLIDNH  199 (383)
Q Consensus       148 ~l~~~L~~~~~~v~~~a~~~L~~l~~~~---~~~~~~----------------------l~~~~---~i~~l~~ll~~~~  199 (383)
                      .+..+|.+-+..-+..++..|...+.+.   +.....                      ..+.+   ++...-.++.+. 
T Consensus       221 klC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-  299 (968)
T KOG1060|consen  221 KLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-  299 (968)
T ss_pred             HHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-
Confidence            8888888866666666777776666321   100000                      00100   123334566677 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC----------------CCHH
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG----------------GTHE  263 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~----------------~~~~  263 (383)
                      ++.+..+++.+...++..+.  .     ..++..|+.+|.++ ..+|......|..++..                .++.
T Consensus       300 n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~  371 (968)
T KOG1060|consen  300 NPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT  371 (968)
T ss_pred             CcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence            88899999999988875431  1     23456677766543 23333333333333321                0111


Q ss_pred             HHH--------HHHHcC----ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH
Q 037142          264 QIK--------YLEREG----CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK  331 (383)
Q Consensus       264 ~~~--------~l~~~~----~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  331 (383)
                      +..        .+....    +++-+..-.++.|.++...++.+|..+.......                  ..-.+.-
T Consensus       372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~g  433 (968)
T KOG1060|consen  372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNG  433 (968)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHH
Confidence            111        111111    1222222333444455555666666665433221                  2234566


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          332 IENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       332 L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      |..++.+.+..|...+...|..+...+-
T Consensus       434 Lv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  434 LVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            6777777777777777777777766553

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.03  E-value=0.00024  Score=68.21  Aligned_cols=316  Identities=16%  Similarity=0.098  Sum_probs=208.4

Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc--CCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142           11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA--ESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL   87 (383)
Q Consensus        11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~--~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l   87 (383)
                      +....+++++.+.++..+..+.++..|...+.++..  +.+ +..+     .+.+.+++.. ++.+..++.........+
T Consensus       270 ~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~-----~~~~~l~~~~-~d~~~~v~~~~~~~~~~L  343 (759)
T KOG0211|consen  270 SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK-----SLTESLVQAV-EDGSWRVSYMVADKFSEL  343 (759)
T ss_pred             HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh-----hhhHHHHHHh-cChhHHHHHHHhhhhhhH
Confidence            477888999999999999888999999988888774  222 2222     2234455544 333333333222222111


Q ss_pred             ---------------------------------------cCCC--CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH
Q 037142           88 ---------------------------------------CGGK--PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS  126 (383)
Q Consensus        88 ---------------------------------------~~~~--~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~  126 (383)
                                                             +...  +.........++|.+..+..+.++.++...+..+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~  423 (759)
T KOG0211|consen  344 SSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT  423 (759)
T ss_pred             HHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence                                                   1111  01111223455677777777888888888887777


Q ss_pred             HhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHH
Q 037142          127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNY  206 (383)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~  206 (383)
                      .+.-. .+  ....++ ...|.+...+++.++.|+......+..+-..++..-........++.+..+-... ...++.+
T Consensus       424 ~~~p~-~~--k~~ti~-~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~a  498 (759)
T KOG0211|consen  424 GLSPI-LP--KERTIS-ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLA  498 (759)
T ss_pred             ccCcc-CC--cCcCcc-ccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHH
Confidence            77643 11  111122 3678888899999999999988777666544443333344556677788777776 7889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 037142          207 ACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP  286 (383)
Q Consensus       207 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  286 (383)
                      .++.+-.++....   ..+++...-+.+...+.+....+++.|+..+.-++...+.+   . .....++.++.+...++.
T Consensus       499 il~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w-~~~~~i~k~L~~~~q~~y  571 (759)
T KOG0211|consen  499 ILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---W-ARLEEIPKLLAMDLQDNY  571 (759)
T ss_pred             HHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---h-hHHHhhHHHHHHhcCccc
Confidence            9999988875432   44455556666777777888999999999998887653311   1 112357777777766677


Q ss_pred             HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          287 QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       287 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      ..|...+.++..++...++.                +.....++.+.++..++.++|+-.+.+.+..+...-..
T Consensus       572 ~~R~t~l~si~~la~v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~  629 (759)
T KOG0211|consen  572 LVRMTTLFSIHELAEVLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE  629 (759)
T ss_pred             chhhHHHHHHHHHHHHhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence            78888888888777765543                33444578889999999999999999988887766553

>PF05536 Neurochondrin: Neurochondrin

Probab=97.97  E-value=0.0024  Score=60.11  Aligned_cols=237  Identities=16%  Similarity=0.079  Sum_probs=156.8

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC----hhhhhchhHHHHHhhcc-------CCHHHHHHHHHHHHHhc
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI----FDQVRPCLPTLAQLVHS-------NDEHVMSNACWGLSLLC  129 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~l~~ll~~-------~~~~~~~~~~~~l~~l~  129 (383)
                      +...+++| +..+.+-+-.++..+.+++...+...    .....-+.+.+-+++.+       +....+.-++..|..+|
T Consensus         7 l~~c~~lL-~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    7 LEKCLSLL-KSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHh-ccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            45667777 45554456667777778777653221    12334567788888886       23566777888888888


Q ss_pred             cCCCch-HHHHHHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142          130 DGGKND-EIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA  207 (383)
Q Consensus       130 ~~~~~~-~~~~~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a  207 (383)
                      .. +.- ....+..  -+|.++..+.+.+. .+...++.+|..++ ..++..+.+++.|.++.|.+.+.+  .+.....+
T Consensus        86 ~~-~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   86 RD-PELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             CC-hhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            75 221 1133443  58999999988766 99999999999999 556677789999999999999876  45678889


Q ss_pred             HHHHHHHhcCCHHHHHH---HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHH----HHHHHHHcCChHHHHhh
Q 037142          208 CWIISNITAGNREQIQA---VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHE----QIKYLEREGCIKPLCDL  280 (383)
Q Consensus       208 ~~~l~nl~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~----~~~~l~~~~~i~~L~~l  280 (383)
                      +.++.+++.........   -.-..+++.+...+.......+-+++..|..+....+..    ....-.-..+...+.++
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            99998887643211100   001234566666666667778888899999998764211    01111112355566677


Q ss_pred             cCCC-CHHHHHHHHHHHHHHHHhch
Q 037142          281 LLCP-DPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       281 l~~~-~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++++ .+.-|..++.....++...+
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~~G  264 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDLLG  264 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            7765 45667778888877777633

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.97  E-value=1.3e-05  Score=50.13  Aligned_cols=55  Identities=27%  Similarity=0.492  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          201 TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       201 ~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                      +.+|..|+++|++++...+..... ....+++.|..++.+++..||..|+|+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998877666665 4456899999999998889999999999875

...

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.91  E-value=0.00057  Score=59.76  Aligned_cols=227  Identities=13%  Similarity=0.066  Sum_probs=157.2

Q ss_pred             HHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh----hhh----hchhHHHHHhhccCCHHHHHHHHH
Q 037142           52 RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF----DQV----RPCLPTLAQLVHSNDEHVMSNACW  123 (383)
Q Consensus        52 ~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~----~~~i~~l~~ll~~~~~~~~~~~~~  123 (383)
                      ...+...+.+..|+..| ..-+-+.+..+..+..++.+.......    ...    ..++..|+...+  ++++...+..
T Consensus        69 a~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~  145 (335)
T PF08569_consen   69 AQEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGD  145 (335)
T ss_dssp             HHHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHH
Confidence            34456778888999998 677889999999999999988733321    111    234444444444  5566667777


Q ss_pred             HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC---CChHHHHHhhccccc
Q 037142          124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC---GALPYLLGLLIDNHK  200 (383)
Q Consensus       124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~~  200 (383)
                      .|...++.  ....+.+.....+..++..+..++-++...|..++..+..........++..   .++.....++.++ +
T Consensus       146 mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-N  222 (335)
T PF08569_consen  146 MLRECIKH--ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-N  222 (335)
T ss_dssp             HHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-S
T ss_pred             HHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-C
Confidence            78888876  5666777777888999999999999999999999999876655454445543   3566778888888 9


Q ss_pred             hhHHHHHHHHHHHHhcCC--HHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHH--cCC
Q 037142          201 TSIKNYACWIISNITAGN--REQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG--THEQIKYLER--EGC  273 (383)
Q Consensus       201 ~~~~~~a~~~l~nl~~~~--~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~--~~~  273 (383)
                      .-+++.++..|+.+....  -......+ +..-+..++.+|.+.+..++-+|..++--+..+.  +++....+..  ..+
T Consensus       223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kL  302 (335)
T PF08569_consen  223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKL  302 (335)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHH
T ss_pred             eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            999999999999997543  23333333 5667999999999999999999999998888775  3343344333  245


Q ss_pred             hHHHHhhcCCC
Q 037142          274 IKPLCDLLLCP  284 (383)
Q Consensus       274 i~~L~~ll~~~  284 (383)
                      +..|-++..+.
T Consensus       303 l~fl~~f~~~~  313 (335)
T PF08569_consen  303 LRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHTTTTT-
T ss_pred             HHHHHhCCCCC
Confidence            66666655544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.87  E-value=0.00013  Score=51.24  Aligned_cols=95  Identities=16%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC
Q 037142          203 IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL  282 (383)
Q Consensus       203 ~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  282 (383)
                      .|+.++..|+.++.+-+......+ ..++++++..+.+++.+||..||.+|.|++.....+....+  ..+++.|.+++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence            366777888887665444443333 34889999999999999999999999999876444444443  348999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 037142          283 CPDPQIVTVCLKALENILK  301 (383)
Q Consensus       283 ~~~~~v~~~al~~l~~l~~  301 (383)
                      +.++.|+..| ..|-++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999988755 66666653

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.87  E-value=0.00083  Score=51.20  Aligned_cols=131  Identities=15%  Similarity=0.116  Sum_probs=105.9

Q ss_pred             HHHHHhCcHHHHHHhcCCCC------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHH
Q 037142          138 QAVIEAGVCPRLVKLLGHPS------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWI  210 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~  210 (383)
                      ..++..++++.|++++.++.      .++...++.++..|..+.- ..-..++..++..+...+.... +..+...|+..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45667788999999998854      4888899999999998753 2233566678889998887653 68899999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037142          211 ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE  269 (383)
Q Consensus       211 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~  269 (383)
                      |-+++..++.....+-+.=-++.|+..++.++++++..|...+-.+....++...+.+.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            99999988777777777777999999999999999999999999888777666665443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.84  E-value=7.3e-05  Score=46.68  Aligned_cols=55  Identities=29%  Similarity=0.480  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                      +.+|..++++|.+++.. ..+....... .+++.|..+|+++++.|+..++++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEG-CPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTT-THHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcc-cHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57899999999999877 5555555444 4899999999999999999999999875

...

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.0054  Score=59.41  Aligned_cols=280  Identities=14%  Similarity=0.145  Sum_probs=167.4

Q ss_pred             CChHHHHHhhC------C--CChHHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142           17 GAVPIFVKLLA------S--PSDDIRMQSVWALGNIAA---ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus        17 g~i~~L~~lL~------~--~~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      |+++.+++.|.      .  .++.-.+-|+..++++++   ..+.++ ..++.-+++.++-.+ +++--.++..|+|+++
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f-~s~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEF-QSPYGYLRARACWVLS  487 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhh-cCchhHHHHHHHHHHH
Confidence            56666677776      2  345666778888888873   121222 223344456666677 6777789999999999


Q ss_pred             hhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHH
Q 037142           86 NLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        86 ~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~  162 (383)
                      .++.-. ..+......++....+++. +++..++..++.+|..+..+ .......+..+  ++++.++.+.+.-+.+...
T Consensus       488 ~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~-~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt  565 (1010)
T KOG1991|consen  488 QFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN-QEQADEKVSAHVPPIMQELLKLSNEVENDDLT  565 (1010)
T ss_pred             HHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc-chhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence            999553 3444556778888888888 77899999999999999877 33222222221  3566667777765545555


Q ss_pred             HHHHH-HhhhhcCCCccccceecCCChHHHHHhhcc---c--cchhHHHHHHHHHHHHhc------CCHHHHHHHHhcCC
Q 037142          163 QALHT-VGNIARGDYSQTLYIINCGALPYLLGLLID---N--HKTSIKNYACWIISNITA------GNREQIQAVIDAGL  230 (383)
Q Consensus       163 ~a~~~-L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~---~--~~~~~~~~a~~~l~nl~~------~~~~~~~~~~~~~~  230 (383)
                      ..+.. ++.++..-....-.+.+ .+.....+++.+   .  .+..=...|.++|..+..      ..++..+. ++..+
T Consensus       566 ~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~  643 (1010)
T KOG1991|consen  566 NVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIV  643 (1010)
T ss_pred             HHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence            44443 34443322222111221 344556666653   1  122334445555544431      22222222 23445


Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      ++.+-.++.+.-.++-++++..+..++... ++--..+.+  +.+.+.+.++....+.-....-+|.|++..+..
T Consensus       644 l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  644 LPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence            666666677777778888888777776542 222223333  677777777777666677777778888777665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.79  E-value=0.00013  Score=51.16  Aligned_cols=87  Identities=20%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCC
Q 037142           77 KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP  156 (383)
Q Consensus        77 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~  156 (383)
                      |.-++.+|+..+..-+.........++|.++..+.++|..+|..+|.+|++++.. ..+..-.... .+++.|.+++.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~-~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFN-EIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHcCC
Confidence            4566777777766654555556688999999999999999999999999999976 3332222222 4788999999999


Q ss_pred             ChhhHHHHH
Q 037142          157 SQSVLTQAL  165 (383)
Q Consensus       157 ~~~v~~~a~  165 (383)
                      +++|+..|.
T Consensus        81 d~~Vr~~a~   89 (97)
T PF12755_consen   81 DENVRSAAE   89 (97)
T ss_pred             chhHHHHHH
Confidence            999887763

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.74  E-value=0.0072  Score=55.67  Aligned_cols=255  Identities=15%  Similarity=0.087  Sum_probs=158.8

Q ss_pred             CCChHHHHHHHhCCChHHHHHhh----------CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC--
Q 037142            4 SKTLEDKKAVVDHGAVPIFVKLL----------ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH--   71 (383)
Q Consensus         4 ~~~~~~~~~~~~~g~i~~L~~lL----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~--   71 (383)
                      ++++.....+.....+..|.++-          ...++.+...|++||.|+...++..|..+.+.|..+.++..|+..  
T Consensus         9 sRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~   88 (446)
T PF10165_consen    9 SRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSD   88 (446)
T ss_pred             ccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccc
Confidence            45566666666666677776665          237899999999999999999999999999999999999999643  


Q ss_pred             --CChhHHHHHHHHHHhhcCCCCCCChhh--hhchhHHHHHhh----cc-------------CCHHHHHHHHHHHHHhcc
Q 037142           72 --ENLSMKRIATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLV----HS-------------NDEHVMSNACWGLSLLCD  130 (383)
Q Consensus        72 --~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~l~~ll----~~-------------~~~~~~~~~~~~l~~l~~  130 (383)
                        .+.++.-...++|.-++...+......  ..+++..+...+    ..             .+.+....++..+.|+..
T Consensus        89 ~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~  168 (446)
T PF10165_consen   89 SSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITL  168 (446)
T ss_pred             cCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhh
Confidence              256666667777776665543322122  134555544433    21             145667888899999987


Q ss_pred             CCCchHHH-HHHH--hCcHHHHHHhcC---C--CChhhHHHHHHHHhhhhcCCCcc-----------ccceecCCChHHH
Q 037142          131 GGKNDEIQ-AVIE--AGVCPRLVKLLG---H--PSQSVLTQALHTVGNIARGDYSQ-----------TLYIINCGALPYL  191 (383)
Q Consensus       131 ~~~~~~~~-~~~~--~~~i~~l~~~L~---~--~~~~v~~~a~~~L~~l~~~~~~~-----------~~~l~~~~~i~~l  191 (383)
                      . .+.... ....  ..++..+..++.   .  +.......+..+|.++-......           .-.......+..+
T Consensus       169 ~-~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L  247 (446)
T PF10165_consen  169 H-YPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL  247 (446)
T ss_pred             c-cCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence            6 332221 1111  013344444421   1  33456777778887773211111           0011223456666


Q ss_pred             HHhhcc----cc---chhHHHHHHHHHHHHhcCCHHHHHHHHh----------------cCChHHHHHHhhcCchhHHHH
Q 037142          192 LGLLID----NH---KTSIKNYACWIISNITAGNREQIQAVID----------------AGLIGPLVNLLQNAVFYIKKE  248 (383)
Q Consensus       192 ~~ll~~----~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~v~~~  248 (383)
                      +.+|..    ..   -.......+.+|.+++..+...+..+..                ..+-..|+.++.++.+.+|..
T Consensus       248 l~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~  327 (446)
T PF10165_consen  248 LDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDA  327 (446)
T ss_pred             HHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHH
Confidence            666642    10   1245667888888888876555444432                123456888888888899999


Q ss_pred             HHHHHHHhcCC
Q 037142          249 AAWAISNATFG  259 (383)
Q Consensus       249 a~~~l~~l~~~  259 (383)
                      +...+..+|..
T Consensus       328 vaellf~Lc~~  338 (446)
T PF10165_consen  328 VAELLFVLCKE  338 (446)
T ss_pred             HHHHHHHHHhh
Confidence            98888888744

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.01  Score=58.80  Aligned_cols=226  Identities=14%  Similarity=0.070  Sum_probs=146.2

Q ss_pred             CCCChhHHHHHHHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHH
Q 037142           70 NHENLSMKRIATWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCP  147 (383)
Q Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~  147 (383)
                      ++.+..++..+..+|..++...+..  .......+...+.+-+++.+...+...+.++..+....+.+....+..  .++
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~  741 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP  741 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence            4447789999999999999874222  222335566667777777788888888888888887612233333333  345


Q ss_pred             HHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCC------ChHHHHHhhc----cccchhHHHHHHHHHHHHhcC
Q 037142          148 RLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG------ALPYLLGLLI----DNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       148 ~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~------~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~  217 (383)
                      .++-.+++.|...+..+..+|..++.     ++...+.|      .+..++..+.    .+ ...+....+.++..+...
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHH
Confidence            55555588888899999998888872     11111111      3333333332    33 333333335566666543


Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                      .........-.++++.+..++.++++++++.|+.++..++...+........ ..+++.++.+.++....++..+...+.
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2222222222345566666777899999999999999999876555544432 247888889888888899999999999


Q ss_pred             HHHHhch
Q 037142          298 NILKVGE  304 (383)
Q Consensus       298 ~l~~~~~  304 (383)
                      .+++..+
T Consensus       895 kLirkfg  901 (1176)
T KOG1248|consen  895 KLIRKFG  901 (1176)
T ss_pred             HHHHHhC
Confidence            9988655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.0021  Score=60.11  Aligned_cols=163  Identities=18%  Similarity=0.208  Sum_probs=112.8

Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      ++=+.+-+++.+.|+-+|.....++.---.+  ..+      .+.+..|++. .++.|++|+.+|.-+|+.++..+++  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G--Tgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--  588 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVG--TGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--  588 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhc--cCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--
Confidence            4556677788888888888776665432222  111      1356777777 6778999999999999999876663  


Q ss_pred             cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                             ..+..+++|+...++.||..+..+|+-.|++....       ..+..|-.+..++..-||+.|+.+++-+...
T Consensus       589 -------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  589 -------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             -------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence                   36667788877769999999999999988875321       1344555666778888999999998888765


Q ss_pred             CCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 037142          260 GTHEQIKYLEREGCIKPLCDLLLCPDPQIV  289 (383)
Q Consensus       260 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  289 (383)
                      .++......  .++.+.+.+.+.+++.+..
T Consensus       655 ~t~~~~pkv--~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  655 QTEQLCPKV--NGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             cccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence            543333331  2456667777766655443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.70  E-value=0.032  Score=51.23  Aligned_cols=313  Identities=17%  Similarity=0.150  Sum_probs=171.0

Q ss_pred             hHHHHHhhCCCCh---HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142           19 VPIFVKLLASPSD---DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-   94 (383)
Q Consensus        19 i~~L~~lL~~~~~---~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-   94 (383)
                      +|.|+..|.+.++   .-...++.+|..++....-+.....  ..+..+........+......++.++.++....... 
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            4678888877544   6788899999999976543333322  444444444433446667777777887776654211 


Q ss_pred             ---Chhhh--hchhHHHHHhhcc-----C--CHHHHHHHHHHHHHhccCCCchHHHHHHHh-------------------
Q 037142           95 ---IFDQV--RPCLPTLAQLVHS-----N--DEHVMSNACWGLSLLCDGGKNDEIQAVIEA-------------------  143 (383)
Q Consensus        95 ---~~~~~--~~~i~~l~~ll~~-----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-------------------  143 (383)
                         .....  ..++|.+......     .  ++.+...+...+..+.+..+.+..+.+.+.                   
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~  158 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS  158 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc
Confidence               12222  2266666665531     1  244444444444444443222222222210                   


Q ss_pred             -------C-----------------------cHHHHHHhcC-CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHH
Q 037142          144 -------G-----------------------VCPRLVKLLG-HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLL  192 (383)
Q Consensus       144 -------~-----------------------~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~  192 (383)
                             .                       ++..++.+.. .+++..+..++++++.++...+...  .. ..+++.+.
T Consensus       159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~  235 (415)
T PF12460_consen  159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLL  235 (415)
T ss_pred             ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHH
Confidence                   0                       1222222221 2345556666666666664321111  00 02233333


Q ss_pred             Hhh-ccccchhHHHHHH----HHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC------
Q 037142          193 GLL-IDNHKTSIKNYAC----WIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG------  260 (383)
Q Consensus       193 ~ll-~~~~~~~~~~~a~----~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~------  260 (383)
                      ..+ ... .+..+..++    |+...+.. +++. ..     .++..|+.++.+  +++...|+..+.-+....      
T Consensus       236 ~~~~~~~-~~~~~~~~~~~~~Wi~KaLv~R~~~~-~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~  306 (415)
T PF12460_consen  236 QSISSSE-DSELRPQALEILIWITKALVMRGHPL-AT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK  306 (415)
T ss_pred             hhhcccC-CcchhHHHHHHHHHHHHHHHHcCCch-HH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc
Confidence            333 122 333344443    34433333 3322 21     234567777765  667778888887776651      


Q ss_pred             -CHHHHHHHHHc----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH
Q 037142          261 -THEQIKYLERE----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL  335 (383)
Q Consensus       261 -~~~~~~~l~~~----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l  335 (383)
                       +....+.+.+.    .++|.|++..+..+.+.+...+.||..+++..+...           +...+.  ..++.|.+-
T Consensus       307 ~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v-----------l~~~l~--~LlPLLlqs  373 (415)
T PF12460_consen  307 ENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV-----------LLPELP--TLLPLLLQS  373 (415)
T ss_pred             cccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH-----------HHHHHH--HHHHHHHHH
Confidence             12334444443    357777777777777788889999999998766432           222222  245777777


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCC
Q 037142          336 QRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       336 ~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      ++.++.+++..+..++..+..+.
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcC
Confidence            88999999999999999888776

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.0033  Score=57.24  Aligned_cols=194  Identities=15%  Similarity=0.071  Sum_probs=103.7

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI  141 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  141 (383)
                      |.|-.+| ++.-+.+.-.+++.+..++..+  .........+..|-.++++.....|-.|...|..++-. .+..+. . 
T Consensus       267 pfL~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~-~P~kv~-v-  340 (898)
T COG5240         267 PFLNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK-YPQKVS-V-  340 (898)
T ss_pred             HHHHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh-CCceee-e-
Confidence            4445555 3433455556666666666543  22334566777777788888888888888888888865 222221 1 


Q ss_pred             HhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH
Q 037142          142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ  221 (383)
Q Consensus       142 ~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~  221 (383)
                         +-+.+=.++.+.+..+...|...|..  .+.++.+..+     +..+..++++- +...+.-++.++..++..-+.-
T Consensus       341 ---cN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrL-----v~~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k  409 (898)
T COG5240         341 ---CNKEVESLISDENRTISTYAITTLLK--TGTEETIDRL-----VNLIPSFVHDM-SDGFKIIAIDALRSLSLLFPSK  409 (898)
T ss_pred             ---cChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHH-----HHHHHHHHHhh-ccCceEEeHHHHHHHHhhCcHH
Confidence               23445556666677776666655533  3444444322     22333333333 3334444444444444333332


Q ss_pred             HHHHHhcCChHHHHHHh-hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC
Q 037142          222 IQAVIDAGLIGPLVNLL-QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC  283 (383)
Q Consensus       222 ~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  283 (383)
                      ...+     +..|...| +.+..+.|+.++.+|..+..+. ++....     .+..|+..+.+
T Consensus       410 ~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~skEr-----aLe~LC~fIED  461 (898)
T COG5240         410 KLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMEND-PDSKER-----ALEVLCTFIED  461 (898)
T ss_pred             HHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhC-chHHHH-----HHHHHHHHHhh
Confidence            3222     33444444 3456777777777777777663 333333     34556666643

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.0016  Score=65.64  Aligned_cols=188  Identities=12%  Similarity=0.114  Sum_probs=111.6

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      ..++|.|.+.=.+++..++..-...-..|... +..-...... .++..|+.-|.+..++|++++|.+|..|..+.+...
T Consensus       997 ~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen  997 KKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred             HHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence            45666666666688877765544444444433 2333333333 478888889999999999999999999998765321


Q ss_pred             cceecC--CChHHHHHhhccccchhHHHHH---HHHHHHHhcC-----CHHHHHHHHhcCChHHHHHH-hhcCchhHHHH
Q 037142          180 LYIINC--GALPYLLGLLIDNHKTSIKNYA---CWIISNITAG-----NREQIQAVIDAGLIGPLVNL-LQNAVFYIKKE  248 (383)
Q Consensus       180 ~~l~~~--~~i~~l~~ll~~~~~~~~~~~a---~~~l~nl~~~-----~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~  248 (383)
                        +.+.  .+-..+...+.+- .+.+|+.|   +.+++.++..     ++.....++ ..++|.|++= +-+.-.++|+-
T Consensus      1075 --~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~ 1150 (1702)
T KOG0915|consen 1075 --VKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRF 1150 (1702)
T ss_pred             --HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHH
Confidence              1111  1222333344444 67788775   4555555421     111111111 2234444331 11457899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH-HHHH
Q 037142          249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTV-CLKA  295 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~-al~~  295 (383)
                      +..++..++...+......+.  ..++.|++....-++.+..+ ++.+
T Consensus      1151 si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             HHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh
Confidence            999999999875544444433  37888999888777766544 4444

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.0045  Score=59.34  Aligned_cols=168  Identities=13%  Similarity=0.122  Sum_probs=116.9

Q ss_pred             cCCCChhhHHHHH-HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          153 LGHPSQSVLTQAL-HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       153 L~~~~~~v~~~a~-~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                      +.+.++.-+..|+ +++..++.+++ ..      ..++.+++...+. +.++++-.-.-+-+++...|+..-.     .+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATR-DVELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            5555555555555 44566655554 11      2455566666666 8888888888888888877643322     24


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcC
Q 037142          232 GPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT  311 (383)
Q Consensus       232 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  311 (383)
                      +.+.+=++++++.+|..|..+++.+-.   ++....     +++++.+++.++++.||+.|..|+.++.+.+...     
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~~---~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----  161 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLRV---KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----  161 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcCh---HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----
Confidence            456666777888888888888877642   233333     5788888888888888888888888888765433     


Q ss_pred             CCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       312 ~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                                 ..+.|....+..+..+.++.|...|...+....++
T Consensus       162 -----------~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         162 -----------YHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----------hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence                       56777888888888888888888888777766655

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.62  E-value=0.00018  Score=41.66  Aligned_cols=38  Identities=53%  Similarity=0.654  Sum_probs=35.0

Q ss_pred             HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       220 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      +.+..+.+.|+++.|++++.+++.++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46777889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.62  E-value=0.00092  Score=63.94  Aligned_cols=187  Identities=18%  Similarity=0.154  Sum_probs=136.8

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHH-------------HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFR-------------DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~-------------~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      ..|+.+|+  ++++-..+..++.-+..|++..+             +.+. ..++|.+++.+ ...+...+..-..+|++
T Consensus       818 ~klld~Ls--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  818 EKLLDLLS--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHhcC--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            34444444  35666677777777776665333             2222 45788899988 46677888899999999


Q ss_pred             hcCCCCCCC-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC---hhhHH
Q 037142           87 LCGGKPRPI-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS---QSVLT  162 (383)
Q Consensus        87 l~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~---~~v~~  162 (383)
                      ...+.|... ......++|.|++.+.-.|..++..+..++..+... .+.....-.++ ++|.++.+=++.+   -.++.
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~-~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE-SETLQTEHLST-LVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh-ccccchHHHhH-HHHHHHhcCCCCCcchhHHHH
Confidence            988766542 223478999999999999999999999999888765 34444444443 7788887777755   56889


Q ss_pred             HHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142          163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN  213 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n  213 (383)
                      .|+.+|..+.+.-|...-...+..++..+.+.|.++ ..-+|++|.++=.+
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            999999999986555544456668899999999998 88999999876443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.58  E-value=0.0053  Score=48.97  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=74.0

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHh
Q 037142           30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQL  109 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~l  109 (383)
                      ++.+|..++-+++.++...+...+     ..++.+...| +++++.+|++|+.+|..|...+..+.   ...++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence            578999999999999965544333     2368899999 78899999999999999987653221   12344777888


Q ss_pred             hccCCHHHHHHHHHHHHHhccC
Q 037142          110 VHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus       110 l~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999965

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.0033  Score=58.99  Aligned_cols=220  Identities=13%  Similarity=0.092  Sum_probs=135.6

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      +..+..+|.+.++.++..|+..|..++.+....+..      ...+++++-+.++..++-..+.-|..+..    .....
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i  314 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI  314 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence            455566666666677777777776666543222211      24455555444444444444444444441    12234


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..+.+--+++++.++|.+++..++.....|....+-+.+-.+.+..+...--. =.+++.+-+...+++++..+...++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            56677778888999999999999999888886511122222222111111000 01245566888899999998776654


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhc
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNAT  257 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~  257 (383)
                      ..     .+++.+++.+.+. ++.-....+..+.......|..+..+     +..|.+-+.. .+.++.+.|+|.++.-+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            43     6789999999988 88777777777777766665555444     4455555543 57788889999999988


Q ss_pred             CCC
Q 037142          258 FGG  260 (383)
Q Consensus       258 ~~~  260 (383)
                      ...
T Consensus       463 e~~  465 (948)
T KOG1058|consen  463 EGL  465 (948)
T ss_pred             hhh
Confidence            763

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.012  Score=52.06  Aligned_cols=182  Identities=16%  Similarity=0.172  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC---------ccccceecCCChH
Q 037142          119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY---------SQTLYIINCGALP  189 (383)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~l~~~~~i~  189 (383)
                      ..++.-+.-++..  ++.+..+++...++.++.+|.++|..+..+.+..+..++..+-         ..+..+++.++++
T Consensus       102 hd~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla  179 (536)
T KOG2734|consen  102 HDIIQEMHVLATM--PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA  179 (536)
T ss_pred             HHHHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence            3455566667766  7788888999999999999999999999999999999984321         2245567778889


Q ss_pred             HHHHhhccccchhHHH------HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHHHHHHHHHHHhcCCCC
Q 037142          190 YLLGLLIDNHKTSIKN------YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAISNATFGGT  261 (383)
Q Consensus       190 ~l~~ll~~~~~~~~~~------~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~  261 (383)
                      .|+..+..- ++.++.      ..+..+-|++.-.+.....+.+.|.+..|..-+..  +-...+..|...++-+..+++
T Consensus       180 LLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~  258 (536)
T KOG2734|consen  180 LLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD  258 (536)
T ss_pred             HHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence            998888765 555554      46677888888888888888888888887774432  344566777778877777644


Q ss_pred             HHHHHHHHHcCChHHHHhhcC---CCC------HHHHHHHHHHHHHHHHhch
Q 037142          262 HEQIKYLEREGCIKPLCDLLL---CPD------PQIVTVCLKALENILKVGE  304 (383)
Q Consensus       262 ~~~~~~l~~~~~i~~L~~ll~---~~~------~~v~~~al~~l~~l~~~~~  304 (383)
                       +....+..-+++..+++-+.   ..+      .+...+...+|+.++....
T Consensus       259 -e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~  309 (536)
T KOG2734|consen  259 -ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA  309 (536)
T ss_pred             -hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence             45666667788888887653   333      2556677778887776544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.52  E-value=0.013  Score=46.74  Aligned_cols=93  Identities=25%  Similarity=0.311  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH
Q 037142          114 DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG  193 (383)
Q Consensus       114 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~  193 (383)
                      ++.+|.+++.+++.++.. .+.    +++. .++.+...|+++++.|+..|+.+|..|...+.-.    .+..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r-~~~----~ve~-~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIR-YPN----LVEP-YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHh-CcH----HHHh-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            578999999999999976 332    2332 5799999999999999999999999998654311    22233478888


Q ss_pred             hhccccchhHHHHHHHHHHHHhcC
Q 037142          194 LLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       194 ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                      ++.++ ++.++..|..++..+...
T Consensus        71 ~l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCC-CHHHHHHHHHHHHHHHHh
Confidence            88888 999999999999998765

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.015  Score=54.99  Aligned_cols=285  Identities=13%  Similarity=0.121  Sum_probs=161.5

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR  100 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  100 (383)
                      .+=.++.+....+...|++++.++....+..  ..   ..+..|--++ +++...+|-.|+++|..++...|...    .
T Consensus       249 fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v----~  318 (865)
T KOG1078|consen  249 FLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAV----T  318 (865)
T ss_pred             HHHHHHhchhHHHHHHHHHHHhhccccCHhh--cc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccc----c
Confidence            3334445567788888888888877543221  11   1344444445 67778888888888888887664321    2


Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccc
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL  180 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  180 (383)
                      ..-.-|-.++.+.+..+...+..++..-.   ....+..+...  ++.++.=+.++..-+...+.++|+..   .+    
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKTG---~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~---fp----  386 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKTG---TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLK---FP----  386 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHhc---chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhh---cc----
Confidence            23334556666666666555555554433   23444444332  34444445555555555555554433   22    


Q ss_pred             ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142          181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       181 ~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                       ....+.+..|..+|.....-+.+.....++..++..+++.++.     ++..|...+.+.  +...-+...+.-+...+
T Consensus       387 -~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg  458 (865)
T KOG1078|consen  387 -RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG  458 (865)
T ss_pred             -HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC
Confidence             1223556666677665546677788888888877766555543     344455555432  22233444444443322


Q ss_pred             CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC
Q 037142          261 THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN  340 (383)
Q Consensus       261 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~  340 (383)
                      .    ........+..+.....-.+..++..|..++.++...++...                  ....-.|.+++.+++
T Consensus       459 P----~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~D  516 (865)
T KOG1078|consen  459 P----KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDSD  516 (865)
T ss_pred             C----CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCch
Confidence            1    000112344455555555677888889999998883332221                  122456778899999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 037142          341 YEIHEKSAKILETYWCG  357 (383)
Q Consensus       341 ~~v~~~a~~~l~~~~~~  357 (383)
                      ++++++|.-.+..+-+.
T Consensus       517 devRdrAtf~l~~l~~~  533 (865)
T KOG1078|consen  517 DEVRDRATFYLKNLEEK  533 (865)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999888776633

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.50  E-value=0.0041  Score=47.48  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=99.7

Q ss_pred             HHHHHHhcCChHHHHHHhcCCCC-----hhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC--CHHHHHHHHH
Q 037142           51 FRDLVLGEAALIPLLTQLNNHEN-----LSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN--DEHVMSNACW  123 (383)
Q Consensus        51 ~~~~~~~~g~i~~L~~~L~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~  123 (383)
                      +...++..|++..|++++.+...     .++...++.++..|..+.-.........++..+...++.+  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788999999999954432     4777888999999998864445555577888888888743  6899999999


Q ss_pred             HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142          124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus       124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      .|-++..+ ++.....+.+.=-++.|+..|+.++++++.+++..+..|-...+
T Consensus        83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            99999998 66667777777778999999999999999999998887765544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.0073  Score=59.68  Aligned_cols=240  Identities=13%  Similarity=0.055  Sum_probs=145.9

Q ss_pred             CCCChHHHHHHHHHHHHHhcCChHHHHHHHhc--CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142           27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGE--AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP  104 (383)
Q Consensus        27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  104 (383)
                      ++.+..+|..+.++|..++... .........  .+-..|.+-+ ++.+...+...+.+|..+....+..........++
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~  741 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP  741 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3457899999999999998752 222111110  1122333333 34456677777888888877655333344444444


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhc--cCC---CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          105 TLAQLVHSNDEHVMSNACWGLSLLC--DGG---KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       105 ~l~~ll~~~~~~~~~~~~~~l~~l~--~~~---~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      -++-.++..+...++.+..+|..++  ...   .++.....++. +++.+...+-.+...+....+-++..+.....+..
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l  820 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL  820 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence            4444448888999999999999888  110   01111222221 34444444433444343333445555544333221


Q ss_pred             cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      ..-.=.++++.+..+|.+. ++.++..|++.+..++..-++..-......+++.+..+.++....+|..+-..+-.++..
T Consensus       821 d~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  821 DDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            1111124455566667788 999999999999999987766665555556899999988888888999888888888776


Q ss_pred             CCHHHHHHHHH
Q 037142          260 GTHEQIKYLER  270 (383)
Q Consensus       260 ~~~~~~~~l~~  270 (383)
                      .+.+.++.+..
T Consensus       900 fg~~eLe~~~p  910 (1176)
T KOG1248|consen  900 FGAEELESFLP  910 (1176)
T ss_pred             hCHHHHHhhCH
Confidence            66565555443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.45  E-value=0.0014  Score=46.05  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          203 IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       203 ~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                      ++...+++++|++..++.....+.+.++++.++....  ..+|-+|+.|.+++.|++.. +++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-NPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-CHHHHHHHHh
Confidence            4678899999999999999999999999999999875  46899999999999999988 4566555443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.0075  Score=61.07  Aligned_cols=326  Identities=14%  Similarity=0.124  Sum_probs=183.2

Q ss_pred             CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      -+.+-.|+++-++ ..+.-+.-|+..++.++....+--+..+ ...||.|.+.= .+|+..++.....+-..|..++...
T Consensus       955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~ 1032 (1702)
T KOG0915|consen  955 PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKV 1032 (1702)
T ss_pred             hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHH
Confidence            3456667777665 4566677788888888854322111111 23456666664 6788887765544444444443333


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH---HHHHHhhh
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ---ALHTVGNI  171 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~---a~~~L~~l  171 (383)
                      .......+++-|+.-+.+..+.+|+.+|.+|..|.++.+.+....... .++..+++.+++=.+.|+.+   ++.+|+.+
T Consensus      1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp-elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP-ELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444557888888888889999999999999999998833333222222 35666677776645556655   56666666


Q ss_pred             hcCCCccccceecCCChHHHHHhhc-----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch---
Q 037142          172 ARGDYSQTLYIINCGALPYLLGLLI-----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF---  243 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~~i~~l~~ll~-----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~---  243 (383)
                      +..--+.....-...+++.+++++-     +. -+.+|..++.++..++...+...... -...+|.|++....-.+   
T Consensus      1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~-v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSK-VNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred             HhhhcccCCcccHHHHHHHHHHHHhccCcccc-hHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHH
Confidence            5221111221112234555555543     44 67899999999999997765533222 23356666665554322   


Q ss_pred             --------hHHHHHHHHHHHhcCCCCH--HHHHHHHH-------cCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchh
Q 037142          244 --------YIKKEAAWAISNATFGGTH--EQIKYLER-------EGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       244 --------~v~~~a~~~l~~l~~~~~~--~~~~~l~~-------~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~  305 (383)
                              .+..+|...+..=+..+++  +.+..++.       ...+|.+.++++.+ .-..+..+...+..++.....
T Consensus      1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence                    2223333332222211111  11111111       13567777777654 335566666677777766554


Q ss_pred             cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      +-.+         +...+     +..+.....+.++.+++....++-.++....+
T Consensus      1270 emtP---------~sgKl-----l~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1270 EMTP---------YSGKL-----LRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred             ccCc---------chhHH-----HHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence            4322         22222     34455556667888877777666666655544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.43  E-value=0.0067  Score=50.22  Aligned_cols=164  Identities=13%  Similarity=0.045  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 037142          205 NYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCD  279 (383)
Q Consensus       205 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~  279 (383)
                      .+|+..+..++.+ ++.+..+++.++.-.|...++..     -..+|-.+..+++.+...++++.+.++.+.+++|..++
T Consensus        68 cnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr  146 (262)
T PF04078_consen   68 CNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR  146 (262)
T ss_dssp             HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence            4456666666664 58888999999988888888643     45789999999999999888999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          280 LLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       280 ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .++.++.-.+-.|...+..++..+.+.....   ...+.+..+..-  .-..+..+.+++++.+.+.......++.+...
T Consensus       147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC---~t~eRf~av~~v--L~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  147 IMEFGSELSKTVATFILQKILLDDVGLNYIC---QTAERFFAVAMV--LNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHT---SSHHHHHHHHHH--HHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHhccHHHHHHHHHHHHHHHcchhHHHHHh---cCHHHHHHHHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            9999988888889999999998766544321   112222222211  12334567888999888888888887777765


Q ss_pred             C-----CCCccccccccccc
Q 037142          360 V-----GPQPGLLYAGNEEN  374 (383)
Q Consensus       360 ~-----~~~~~~~~~~~~~~  374 (383)
                      .     +-+|..+|+++...
T Consensus       222 ar~aL~~~LP~~Lrd~~f~~  241 (262)
T PF04078_consen  222 AREALRQCLPDQLRDGTFSN  241 (262)
T ss_dssp             HHHHHHHHS-GGGTSSTTTT
T ss_pred             HHHHHHHhCcHHHhcHHHHH
Confidence            2     55677777775543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.40  E-value=0.01  Score=52.08  Aligned_cols=210  Identities=12%  Similarity=0.081  Sum_probs=148.0

Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc-----cceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT-----LYIINCGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                      ..++..+.+..++..|..-+-+.+..+..++.++........     +.+.. ..-+.+..++....++++...+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            345556789999999999888999999999999986544331     11221 112222233333325566666666777


Q ss_pred             HHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 037142          213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLLLCPDPQIV  289 (383)
Q Consensus       213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~  289 (383)
                      .++.. +.....++....+..+.+.+..++.++...|..++..+.... +.....++..   .++...-.++.+++.=++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            66654 577788888888889999999999999999999999976653 4444444442   467778889999999999


Q ss_pred             HHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          290 TVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       290 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+++..|..++......          ....+++.+..-+..+..++.+++..|+-.|..+..-|......
T Consensus       227 rqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             hhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            99999999999754432          34567787888888899999999999999999999888777654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0031  Score=60.10  Aligned_cols=222  Identities=14%  Similarity=0.164  Sum_probs=143.3

Q ss_pred             HHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 037142           23 VKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC  102 (383)
Q Consensus        23 ~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  102 (383)
                      +..+.++-+-++-+++..|..+.+.. +-...+...+++...+..| .+.|+-+--+|+..+..+|...|       ..+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i  803 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI  803 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence            34445566778999999999999644 4455566678889999999 67888888899998888887533       457


Q ss_pred             hHHHHHhhccCC----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142          103 LPTLAQLVHSND----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       103 i~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      +|.+.....+..    ++-+..+-.++.++... -.+......+ -++..++...++++..-+..++..++++|.-....
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa-~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA-LGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHH-hccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            788877544221    34455555666666654 2333333323 36777888888888888999999999999654422


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhc---CChHHHHHHhh-cCchhHHHHHHHHHH
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA---GLIGPLVNLLQ-NAVFYIKKEAAWAIS  254 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~-~~~~~v~~~a~~~l~  254 (383)
                      ....+. .++..++.+...+....+|++|+..+..+-.+.....-.+...   +....+..... +++..+|..|+.++-
T Consensus       882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            221111 2345556666666578899999999999877655444443321   12223333332 345567777766664


Q ss_pred             Hh
Q 037142          255 NA  256 (383)
Q Consensus       255 ~l  256 (383)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            33

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.40  E-value=0.021  Score=55.06  Aligned_cols=250  Identities=12%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHh-cCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL-NNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      +++..|.++......++......+|...+.-+++..... +.-+.|..+.+. +.+.|+.+...+-.++-.++... .+.
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~  607 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANY  607 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhh
Confidence            566778888887788888888889998888777765544 345556655554 34557777666666666666531 222


Q ss_pred             hhhhhchhHHHHHhhccCC----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142           96 FDQVRPCLPTLAQLVHSND----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN  170 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~  170 (383)
                      -......+|.+++.+..++    .....-++..|..+.++.+++..+.++.. .+|++.++.-+ +|......+-.||+.
T Consensus       608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra  686 (1005)
T KOG2274|consen  608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRA  686 (1005)
T ss_pred             cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHH
Confidence            2344678999999998665    77778888888888887566655666665 77888887654 788899999999999


Q ss_pred             hhcCCCccccceecCCChH--HHHHhhccccchhHHHHHHHHHHHHh----cCCHHHHHHHHhcCChHH-HHHHhhcCch
Q 037142          171 IARGDYSQTLYIINCGALP--YLLGLLIDNHKTSIKNYACWIISNIT----AGNREQIQAVIDAGLIGP-LVNLLQNAVF  243 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~i~--~l~~ll~~~~~~~~~~~a~~~l~nl~----~~~~~~~~~~~~~~~l~~-L~~ll~~~~~  243 (383)
                      +.....+....--..++..  .++..++.--++..-..++..+|.++    ..-+.....-++. ++.. +.++-+....
T Consensus       687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~l  765 (1005)
T KOG2274|consen  687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETL  765 (1005)
T ss_pred             HHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhH
Confidence            8866543322222222222  33333321113333334444444443    2211111111111 2222 3333344677


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                      ++-..-..+++++...........+.+
T Consensus       766 sviQsLi~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  766 SVIQSLIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            788888888888887744344444433

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.40  E-value=0.015  Score=51.89  Aligned_cols=178  Identities=11%  Similarity=0.063  Sum_probs=116.0

Q ss_pred             CCChhHHHHHHH-HHHhhcCCCCCCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142           71 HENLSMKRIATW-TLSNLCGGKPRPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR  148 (383)
Q Consensus        71 ~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~  148 (383)
                      ++..+-+..|+. ...-++.++..........++..+++.+.+ .+...+.-++..|..++.. .......-.+. .+..
T Consensus       298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~~~l~DstE~-ai~K  375 (516)
T KOG2956|consen  298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QPARLFDSTEI-AICK  375 (516)
T ss_pred             ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh-chHhhhchHHH-HHHH
Confidence            334455666666 444445544333444456677788888887 7888999999999999987 33322222222 4566


Q ss_pred             HHHhcCCCChhhHHHHHH-HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037142          149 LVKLLGHPSQSVLTQALH-TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID  227 (383)
Q Consensus       149 l~~~L~~~~~~v~~~a~~-~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~  227 (383)
                      +++.-.+.++++...|.. ++..++.+.+..        .+..+..++.+. ++..-..++..+..++..-+..--..+-
T Consensus       376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll  446 (516)
T KOG2956|consen  376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL  446 (516)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence            667667766666666554 455566655532        255566666666 7777777777777777532221111123


Q ss_pred             cCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          228 AGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       228 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      ..+.|.+++...+.+..||+.|+++|..+...
T Consensus       447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            56899999999999999999999999888644

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.39  E-value=0.009  Score=57.38  Aligned_cols=221  Identities=15%  Similarity=0.082  Sum_probs=141.8

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ  108 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~  108 (383)
                      ..+-++..|++++...++-  ..-.. ...+++..|+++. ...+.++....+.+|+..+..+|.......+.+.|....
T Consensus       503 ~~~~~ki~a~~~~~~~~~~--~vl~~-~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~  578 (1005)
T KOG2274|consen  503 VPPPVKISAVRAFCGYCKV--KVLLS-LQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN  578 (1005)
T ss_pred             CCCchhHHHHHHHHhccCc--eeccc-cchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence            3445566666666555521  11111 1235667777777 556788888999999999998887777777888888777


Q ss_pred             hhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC----hhhHHHHHHHHhhhhcCCCccccce
Q 037142          109 LVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS----QSVLTQALHTVGNIARGDYSQTLYI  182 (383)
Q Consensus       109 ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l  182 (383)
                      ++.  ++||.+...+-.++..++..  ..+...+.+. .+|.++..|..++    .....-++..|..+.++.+.-....
T Consensus       579 lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~  655 (1005)
T KOG2274|consen  579 LFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL  655 (1005)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence            664  67788877777777777764  3344444443 7899999998865    6677778888887887655433333


Q ss_pred             ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH--HHHHHhhc-CchhHHHHHHHHHHHh
Q 037142          183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG--PLVNLLQN-AVFYIKKEAAWAISNA  256 (383)
Q Consensus       183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~--~L~~ll~~-~~~~v~~~a~~~l~~l  256 (383)
                      +-.-.++++.++.-++.+..+...+--+|+.+.....+....--..++..  .+++.++. -+++.-..++..++.+
T Consensus       656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~l  732 (1005)
T KOG2274|consen  656 LICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPL  732 (1005)
T ss_pred             HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHH
Confidence            33356777777665554788888888888888876655554444333333  55554442 1333333444444433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.0032  Score=62.03  Aligned_cols=160  Identities=19%  Similarity=0.209  Sum_probs=124.4

Q ss_pred             ChHHHHHhhC----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142           18 AVPIFVKLLA----SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        18 ~i~~L~~lL~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      ..|.+++..+    .++|++|..|.-+|+.+..-+.++.+.-     .+.|+..+.+++++.++.+++-+++-++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4566666663    3789999999999999987665554443     689999998899999999999999999876543


Q ss_pred             CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                          .....-+.+...+.+.++.+|+.+..++.+|..+      ..+--.|.++.+..+|.+++.++..-|=..+..|+.
T Consensus       995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence                3445667788888999999999999999999976      233345899999999999999999888888888875


Q ss_pred             CCCccccceecCCChHHHHHhhccc
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDN  198 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~  198 (383)
                      ....    +.  +++|-++.-|++.
T Consensus      1065 k~n~----iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGNT----IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             cccc----hh--hhchHHHHhhccC
Confidence            4432    22  3566666666544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.38  E-value=0.014  Score=47.46  Aligned_cols=158  Identities=13%  Similarity=0.058  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142          204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC  278 (383)
Q Consensus       204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~  278 (383)
                      ..+++..+..++++ ++.+..+++..+--.+..+|..     +..-.|-.+..+|+.+..+++.+.+..+...+++|..+
T Consensus        96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            34555556656555 4778888888887778888764     35679999999999999999889999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccH-----HHHHHHhcCCCHHHHHHHHHHHHH
Q 037142          279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGL-----EKIENLQRHDNYEIHEKSAKILET  353 (383)
Q Consensus       279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~L~~l~~~~~~~v~~~a~~~l~~  353 (383)
                      +.++.++...+..|...+..++..+..          ...+++-.+.-..+     ..+.++.+.++..+.+-+.....+
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~G----------L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlr  244 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVG----------LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLR  244 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhcccc----------HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            999999998899999999988876543          34445444333222     233466777888877776666666


Q ss_pred             hcCCCC-----CCCCccccccccc
Q 037142          354 YWCGRV-----VGPQPGLLYAGNE  372 (383)
Q Consensus       354 ~~~~~~-----~~~~~~~~~~~~~  372 (383)
                      +-+...     ..-+|+.+|+++.
T Consensus       245 Lsdnprar~aL~~clPd~Lrd~tf  268 (293)
T KOG3036|consen  245 LSDNPRARAALRSCLPDQLRDGTF  268 (293)
T ss_pred             hcCCHHHHHHHHhhCcchhccchH
Confidence            555443     2456677777654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.38  E-value=0.041  Score=50.77  Aligned_cols=258  Identities=15%  Similarity=0.044  Sum_probs=158.7

Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhh----------ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV  150 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll----------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~  150 (383)
                      +.+|.-++++...........++..|.++.          ...++.+...|+.||+|+... .+...+.+.+.|..+.++
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-SPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHH
Confidence            344555555554444444556666666665          245789999999999999988 667777788889999999


Q ss_pred             HhcCCC-----ChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhcc----------------ccchhHHHHHH
Q 037142          151 KLLGHP-----SQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLID----------------NHKTSIKNYAC  208 (383)
Q Consensus       151 ~~L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~----------------~~~~~~~~~a~  208 (383)
                      ..|+..     +.++....++.|.-++.........+++. +++..+...+..                +.+.....+++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999875     78888889999988887766666556554 677776665531                01344567889


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---------cCchhHHHHHHHHHHHhcCCCCHHHHHHH-----------
Q 037142          209 WIISNITAGNREQIQAVIDAGLIGPLVNLLQ---------NAVFYIKKEAAWAISNATFGGTHEQIKYL-----------  268 (383)
Q Consensus       209 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---------~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-----------  268 (383)
                      +++-|+....+..... .....++.++.++.         .+.......++-+|.|+-..    ....+           
T Consensus       161 KllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~----~~~~l~~~~~~~~~~~  235 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE----CLDSLLSPKFQQSSLF  235 (446)
T ss_pred             HHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH----HHhhhhcccCCccccc
Confidence            9999998655433320 11223444444332         12456777788888877322    11111           


Q ss_pred             ---HHcCChHHHHhhcCC-----CCH---HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH------------
Q 037142          269 ---EREGCIKPLCDLLLC-----PDP---QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE------------  325 (383)
Q Consensus       269 ---~~~~~i~~L~~ll~~-----~~~---~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~------------  325 (383)
                         .....+..|+++|+.     .+.   +...=.+..|.++++....             .++.++.            
T Consensus       236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~-------------~Rk~lr~~lLP~~~Dr~~~  302 (446)
T PF10165_consen  236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE-------------VRKYLRARLLPPDKDRKKP  302 (446)
T ss_pred             CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH-------------HHHHHHHHhCCChhhcccC
Confidence               111234555555531     111   2233345555566554321             2222222            


Q ss_pred             ----hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          326 ----AKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       326 ----~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                          ...--+|.++..++...++..+..++-.+...
T Consensus       303 ~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  303 PEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhh
Confidence                24566788899999888988888877655443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.33  E-value=0.015  Score=55.27  Aligned_cols=203  Identities=14%  Similarity=-0.008  Sum_probs=142.8

Q ss_pred             CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH-HhccCCCchHHHHHHHhCcHHHHHHhcCCCC-hhhHHHHHHHHh
Q 037142           92 PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS-QSVLTQALHTVG  169 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~-~~v~~~a~~~L~  169 (383)
                      ..+......++...|+.+...+.++.+..+..+|. .+.-.  .....     ..++.+...+..+. .--...++.++.
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~~~~~-----~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--GERSY-----EVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--CCchh-----hhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            34455566899999999999888888888888887 22221  11111     23445544444432 222355788999


Q ss_pred             hhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhcCchhHHHH
Q 037142          170 NIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID-AGLIGPLVNLLQNAVFYIKKE  248 (383)
Q Consensus       170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~  248 (383)
                      ||+..++...+.+.+.-.++.+-.++..+ ++..+..++..+.|+..++.-....+.+ ...++.....+..........
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            99988877777788877788788888888 9999999999999999888677777776 455666666666666777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          249 AAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      ++.++..++... ...+.... -......+..++.+++++++...+..+.|+....
T Consensus       647 ~a~a~a~I~sv~-~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~  701 (748)
T KOG4151|consen  647 GAGALAAITSVV-ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL  701 (748)
T ss_pred             ccccccchhhcc-hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence            777776555542 23333222 2457888999999999999999999988865543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.32  E-value=0.024  Score=52.81  Aligned_cols=246  Identities=14%  Similarity=0.106  Sum_probs=133.6

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ  108 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~  108 (383)
                      +++..+..|+..+..+...-|+..+..     +..++.+. .+.+..+|.+|+..|-.+|.+.+    ..+..+..+|.+
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence            678899999999999999888887766     57899999 78899999999999999999854    346778999999


Q ss_pred             hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC---CCChhhHHHHHHHHhhhhcCCC-cccc--ce
Q 037142          109 LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG---HPSQSVLTQALHTVGNIARGDY-SQTL--YI  182 (383)
Q Consensus       109 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~---~~~~~v~~~a~~~L~~l~~~~~-~~~~--~l  182 (383)
                      +|.++++.-...+-++|..+... ++.        +.+..++..+.   .+++.++..++..|..=...-. +...  .-
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~-d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E  174 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQ-DPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE  174 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhc-CcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence            99999988888888888888765 221        12334444443   4677899999888854432211 1110  01


Q ss_pred             ecCCChHHHHHhhccccchhHHHHHHHHHHHHhc----CCHHHHHHHHhcCChHHHHHHh------hcCchhHHHHHHH-
Q 037142          183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITA----GNREQIQAVIDAGLIGPLVNLL------QNAVFYIKKEAAW-  251 (383)
Q Consensus       183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~v~~~a~~-  251 (383)
                      .+.-++..+.++|.+- ...--...+.+|..+-.    ......+.+++     .+.+..      ...+++.-..... 
T Consensus       175 ~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~Idrli~C  248 (556)
T PF05918_consen  175 MEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESIDRLISC  248 (556)
T ss_dssp             HHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            1122344555566543 33333344455555543    23344444432     222222      1122222222222 


Q ss_pred             ---HHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          252 ---AISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       252 ---~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                         ++--+.... +.....++++ .++|.+-++    +.+.+...+..+..++.++.
T Consensus       249 ~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~  300 (556)
T PF05918_consen  249 LRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCG  300 (556)
T ss_dssp             HHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT--
T ss_pred             HHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCC
Confidence               222223332 4455556555 466655555    44556667777777776654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.0025  Score=56.71  Aligned_cols=274  Identities=15%  Similarity=0.130  Sum_probs=146.3

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhc-----CChHHHHHHHhcCChHHH------HHHhcCCCChhHHHHHHHHHHhhc
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAA-----ESPRFRDLVLGEAALIPL------LTQLNNHENLSMKRIATWTLSNLC   88 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-----~~~~~~~~~~~~g~i~~L------~~~L~~~~~~~~~~~a~~~L~~l~   88 (383)
                      ..+...+.+.++.++.++..++..+..     +.|+..+.-...|.+-.+      -...-++.-...+..++.++.++.
T Consensus       298 RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~  377 (728)
T KOG4535|consen  298 RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSIL  377 (728)
T ss_pred             HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcC
Confidence            344445566789999999988877652     223222222222211111      111213334456667777888877


Q ss_pred             CCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHH
Q 037142           89 GGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHT  167 (383)
Q Consensus        89 ~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~  167 (383)
                      ... ...+.......+-.+..+-.+++.-++..|..++.-+.-+ +.-......-......+...+.+..-..+..+.++
T Consensus       378 ~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawt  456 (728)
T KOG4535|consen  378 PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWS  456 (728)
T ss_pred             chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHH
Confidence            654 2212211222222333333344455666677776666655 33222222222356777777888788899999999


Q ss_pred             HhhhhcC----CCc---cccceecCCChHHHHHhh--ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH----H
Q 037142          168 VGNIARG----DYS---QTLYIINCGALPYLLGLL--IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP----L  234 (383)
Q Consensus       168 L~~l~~~----~~~---~~~~l~~~~~i~~l~~ll--~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~----L  234 (383)
                      ++|++..    -+.   ....+.. -.+..++...  .+..+.+|+.++.++|+|+.    +..+.+.+.+.-..    +
T Consensus       457 lgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnll----Qvlq~i~~~~~~e~~~~~~  531 (728)
T KOG4535|consen  457 LGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLL----QFLQPIEKPTFAEIIEESI  531 (728)
T ss_pred             hhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH----HHHHHhhhccHHHHHHHHH
Confidence            9999732    221   1111110 0112222211  12227889999999999996    33333333222111    1


Q ss_pred             HHHhh----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHH
Q 037142          235 VNLLQ----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENI  299 (383)
Q Consensus       235 ~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l  299 (383)
                      ..++.    .....||-+||++++|+..+..-.....=....+++.|..++. ..+.+++.+|..+|..-
T Consensus       532 ~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp  601 (728)
T KOG4535|consen  532 QALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP  601 (728)
T ss_pred             HhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence            12222    3478999999999999987732111111011235677777765 45778888887777543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.058  Score=50.81  Aligned_cols=130  Identities=19%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142           75 SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG  154 (383)
Q Consensus        75 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~  154 (383)
                      .+.+.+..++..+-..  ........+.+..+++...+++..+|..++..|..+...  ...+...+-.++...+..-+.
T Consensus        61 RIl~fla~fv~sl~q~--d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   61 RILSFLARFVESLPQL--DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHhhhcc--CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHh
Confidence            4444444555444433  223446788889999999999999999999999999875  233333333357788888899


Q ss_pred             CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142          155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN  213 (383)
Q Consensus       155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n  213 (383)
                      +..+.|+..|+.+|+.+-..+.+     -+..+...+..+++.+++++||+.++..+.+
T Consensus       137 Drep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             ccCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            99999999999999998532211     1235678888889888799999998765543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.28  E-value=0.00098  Score=46.81  Aligned_cols=58  Identities=17%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCChHHHHHHHhc
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLA--SPSDDIRMQSVWALGNIAAESPRFRDLVLGE   58 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~   58 (383)
                      |++.++++.+..+.+.|++|.++....  +.+|-+++.|++++.+++..+++.++.+.+.
T Consensus        12 nl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen   12 NLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            678899999999999999999999865  4889999999999999999999988877643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.28  E-value=0.084  Score=46.11  Aligned_cols=198  Identities=14%  Similarity=0.088  Sum_probs=121.7

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC--CCccc
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG--DYSQT  179 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~  179 (383)
                      +.-.+..+.+.....|+.++..+..+..... .+.+..-.. .++..+...++.+..+-+..|+++++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~-tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRE-TLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            3444455566778999999999998886511 122222122 3678888888887766667788888777644  22333


Q ss_pred             cceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHH--hhc----------Cch
Q 037142          180 LYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNL--LQN----------AVF  243 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~l--l~~----------~~~  243 (383)
                      ..+++ .+.+.|...+.+.. ....|..++.+|+-++.   ..++.....++  .+..++..  ...          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            33443 46777888877652 34566667767766543   33333332211  22222221  111          134


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      .+...|+.+-+-+....+...+....+ ..++.|..+|++.+.+||..|..+|.-+.+....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            577777666565665544444444333 4689999999999999999999999988876653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.24  E-value=0.029  Score=51.51  Aligned_cols=189  Identities=16%  Similarity=0.095  Sum_probs=118.7

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhh-cc----CCHHHHHHHHHHHHHhccCCCch
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV-HS----NDEHVMSNACWGLSLLCDGGKND  135 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll-~~----~~~~~~~~~~~~l~~l~~~~~~~  135 (383)
                      +..++.+.....++..+..++.+++.+.-.-+..  .....++..+...+ ..    ..+...+...|....+.-. .++
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R-~~~  267 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR-GHP  267 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc-CCc
Confidence            3344444434445666777777777776542111  13344445444444 21    2245556666777666654 333


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc--------ccceecC----CChHHHHHhhccccchhH
Q 037142          136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ--------TLYIINC----GALPYLLGLLIDNHKTSI  203 (383)
Q Consensus       136 ~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~l~~~----~~i~~l~~ll~~~~~~~~  203 (383)
                      ....     ++..++.++.+  +++...+.+.+..+....++.        ++.+.+.    .++|.+++..... +...
T Consensus       268 ~~~~-----~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~  339 (415)
T PF12460_consen  268 LATE-----LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEI  339 (415)
T ss_pred             hHHH-----HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chhh
Confidence            3222     46778888877  567888888888888663322        2222222    2456666666666 5558


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142          204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                      +...+.+++++..+-|...-.---..++|.+++.+..++.+++..+..++..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            888899999998876543322223558999999999899999999999999998774

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.041  Score=53.65  Aligned_cols=313  Identities=16%  Similarity=0.154  Sum_probs=174.0

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC---hh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI---FD   97 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~   97 (383)
                      .+...++++.--+|..|||.++.+++.+  +++...-..+++...+.|.++.+-.++..|+.+|..+.++.+..+   ..
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            3334445555678999999999999432  222222234456677788667788899999999999998875442   23


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHH-HHhccCCCchHHHHHHHhCcHHHHHHhcCC------CChhhHHHHHHHHhh
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGL-SLLCDGGKNDEIQAVIEAGVCPRLVKLLGH------PSQSVLTQALHTVGN  170 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~------~~~~v~~~a~~~L~~  170 (383)
                      .+.++++-++++.+.-+.+....+...+ +..+.. -.+....++.+ +.....+++..      .++.=...|.++|+.
T Consensus       544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseE-lsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEE-LSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHh-hchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            3466666677777655544444444333 233332 22222333333 55666667663      122233445555554


Q ss_pred             hh---cCCCccccce--ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142          171 IA---RGDYSQTLYI--INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI  245 (383)
Q Consensus       171 l~---~~~~~~~~~l--~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  245 (383)
                      +.   ..-++....+  ++..+++.+-.++++. -.++-++++..+.+++...++..-.+  =++++.+.+.+......-
T Consensus       622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dy  698 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDY  698 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHH
Confidence            43   1112111111  2223455555666666 67777888888877766543332222  235677777777777777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          246 KKEAAWAISNATFGGTHEQIKYLE-REGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       246 ~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      -....-++.|....+.+.....-. -.-+...+..++.++  ...=.+.|++.+..++-.+.. +        .+++...
T Consensus       699 f~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~--------~dq~ipl  769 (1010)
T KOG1991|consen  699 FTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-L--------LDQYIPL  769 (1010)
T ss_pred             HHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-c--------HhhHhHH
Confidence            788889999998776543222110 011233334444442  223345577777777766554 2        3344555


Q ss_pred             HHHhccHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 037142          323 VEEAKGLEKIENLQR-HDNYEIHEKSAKILET  353 (383)
Q Consensus       323 l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~  353 (383)
                      |.+.    .+.++.. .++...+..+.+...+
T Consensus       770 f~~~----a~~~l~~~~e~s~~~~~~leVvin  797 (1010)
T KOG1991|consen  770 FLEL----ALSRLTREVETSELRVMLLEVVIN  797 (1010)
T ss_pred             HHHH----HHHHHhccccchHHHHHHHHHHHH
Confidence            5332    2334444 4555666777765543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.22  E-value=0.11  Score=45.44  Aligned_cols=171  Identities=17%  Similarity=0.093  Sum_probs=115.8

Q ss_pred             hchhHHHH-HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC-c
Q 037142          100 RPCLPTLA-QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY-S  177 (383)
Q Consensus       100 ~~~i~~l~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~-~  177 (383)
                      .++++.++ ..+++.++.+|+.++.|++-.|-- +.+....     .++.+...+..+++.++..+++++.-+....+ .
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            35554444 788899999999999999998876 3322222     46777888877899999999999988873322 1


Q ss_pred             cccce-------ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhc----CchhH
Q 037142          178 QTLYI-------INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID-AGLIGPLVNLLQN----AVFYI  245 (383)
Q Consensus       178 ~~~~l-------~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~----~~~~v  245 (383)
                      .....       -...+++.+...+.+. ++.++..++..++.+.....     +.+ ..++..|+-+..+    ++..+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~L  172 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRL  172 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHH
Confidence            11111       1235678888888888 88999999999988764331     111 3345555555543    35788


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC
Q 037142          246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP  284 (383)
Q Consensus       246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  284 (383)
                      |+.-..++-..+.. ++.+. ..+...+++.+..+.+..
T Consensus       173 rQ~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  173 RQCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence            88888888888876 34443 445556777777776643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0048  Score=56.23  Aligned_cols=158  Identities=16%  Similarity=0.219  Sum_probs=112.7

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142          104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQTLYI  182 (383)
Q Consensus       104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  182 (383)
                      ..+.+++.+.++-+|.....++.---.+  ..      ..+++..+++. .++.++.|+.+|.-+|+.+|..+.      
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~G--Tg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVG--TG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhc--CC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence            3566677778877777766655433222  11      12567788887 677899999999999999986554      


Q ss_pred             ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH
Q 037142          183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  262 (383)
                         ..+...+++|+.+.+..+|.....+|+-.|++.....       .+..|-.++.+++.-||+.|+.+++-+...+++
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence               4566677788777689999999999998888764322       345666778888999999999999998877654


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCCHH
Q 037142          263 EQIKYLEREGCIKPLCDLLLCPDPQ  287 (383)
Q Consensus       263 ~~~~~l~~~~~i~~L~~ll~~~~~~  287 (383)
                      +.-...  .++++.+.+++.+++.+
T Consensus       655 ~Lnp~v--~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         655 ELNPNV--KRIIKKFNRVIVDKHES  677 (926)
T ss_pred             ccChhH--HHHHHHHHHHHhhhhHh
Confidence            433332  24677777777666543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.0019  Score=61.09  Aligned_cols=226  Identities=14%  Similarity=0.066  Sum_probs=149.9

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHH-HHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALG-NIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL   84 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L   84 (383)
                      ....+...|+.|+.+.|..+...+.+..+..+..+|. .+......      -..+++++.+.+.++..-.-.-.++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            3445566788899999999998888888888888887 33322111      1234556666663222222233677889


Q ss_pred             HhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCCCChhhHH
Q 037142           85 SNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        85 ~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~~~~~v~~  162 (383)
                      .||+..+ ..+........++.+-.++..+++..+..++..+.||..+ +.-....+.+ ....+.....+...+.....
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            9998877 3334444466777778888899999999999999999987 3333333444 23445555566666666777


Q ss_pred             HHHHHHhhhhcCCCcccc-ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          163 QALHTVGNIARGDYSQTL-YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~-~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ++++++..+.....+.+. ...-......+..++.+. ++.++...++.+.|+.....+....++....++.+..+-.
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~  722 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK  722 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            777777756555444444 222235677888888888 9999999999999976666566666666666655555433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.17  Score=48.17  Aligned_cols=282  Identities=14%  Similarity=0.091  Sum_probs=164.4

Q ss_pred             CCChHHHHHhhCC-----C---ChHHHHHHHHHHHHHhc--CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142           16 HGAVPIFVKLLAS-----P---SDDIRMQSVWALGNIAA--ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus        16 ~g~i~~L~~lL~~-----~---~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      +|+++.+...|..     +   ++.-.+-|++.+.++.+  ..+.....+++.-+++.++..+ +++---++..++..++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            5889999998842     1   23344556777776654  2223334445555667777777 5666778999999999


Q ss_pred             hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHHH
Q 037142           86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLTQ  163 (383)
Q Consensus        86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~~  163 (383)
                      .+..+  .++......+.+....++++++..++..|+.++..+..+  ......+..+  +.++.++.+-+.-+.++...
T Consensus       486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~--~q~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN--EQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc--hhhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            99554  344455677888888899999999999999999988876  2222333332  23333333334434444444


Q ss_pred             HHHHH-hhhhcCCCccccceecC---CChHHHHHhhcccc-----chhHHHHHHHHHHHHhc------CCHHHHHHHHhc
Q 037142          164 ALHTV-GNIARGDYSQTLYIINC---GALPYLLGLLIDNH-----KTSIKNYACWIISNITA------GNREQIQAVIDA  228 (383)
Q Consensus       164 a~~~L-~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~-----~~~~~~~a~~~l~nl~~------~~~~~~~~~~~~  228 (383)
                      ++..+ ..++..-......+...   .+++....++..++     .++-+..|.+.|..+..      ..+..... +..
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEV  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHH
Confidence            44333 22332211111111110   12223333333221     12345556666655432      22222222 234


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhchhc
Q 037142          229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP-QIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~l~~l~~~~~~~  306 (383)
                      ...|.+--++.+.-.+.-.+|+..+-+.+..  ...+.. +.=|+.+.+.+++.+..+ .....+..++.|++.++...
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~--skeI~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFM--SKEIEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH--HHHhhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence            4566666667777788888899888777654  122221 123567777777777764 56677889999999988654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.20  E-value=0.019  Score=50.04  Aligned_cols=194  Identities=14%  Similarity=0.100  Sum_probs=116.8

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh--hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-CchHHH
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD--QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-KNDEIQ  138 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~  138 (383)
                      ...+..+ .+.....|..++..+.++.......+..  ....+++.+.+.++.+..+-+..++.++.-++... ..+...
T Consensus        46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            3444555 3456788899999888888765333222  23567888888888777655666767666665431 224445


Q ss_pred             HHHHhCcHHHHHHhcCCCC--hhhHHHHHHHHhhhhcCCCccccceec-CCChHHHHH--hhcc---------ccchhHH
Q 037142          139 AVIEAGVCPRLVKLLGHPS--QSVLTQALHTVGNIARGDYSQTLYIIN-CGALPYLLG--LLID---------NHKTSIK  204 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~l~~--ll~~---------~~~~~~~  204 (383)
                      .+++. +.|.|...+.++.  ..++..++.+|+.++.-.......+.. ...+..+..  ..+.         .+++.+.
T Consensus       125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            55554 7788888888744  456667776777665322211111110 011221111  1111         1135678


Q ss_pred             HHHHHHHHHHhcCCHH-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          205 NYACWIISNITAGNRE-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       205 ~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      ..|+.+-+-|...-+. ...... ...++.|..+|.+++..||..|..+|+-+..
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8888777776654333 233322 3468999999999999999999999987753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.17  E-value=0.00086  Score=48.40  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=61.4

Q ss_pred             CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      .++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+=..++.+|.+++++||.+|..++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4688899999555488888899999999999888888777789999999999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.15  E-value=0.036  Score=45.24  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=98.4

Q ss_pred             cCCChHHHHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhH
Q 037142            3 ASKTLEDKKAVVDHGAVPIFVKLLAS-----PSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSM   76 (383)
Q Consensus         3 ~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~   76 (383)
                      || +++.+..|.+..+=-.|-.+|..     +.+-+|..++.+++.+.. ++.+....++..+++|..++.+ ...++..
T Consensus       107 AS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GSelS  184 (293)
T KOG3036|consen  107 AS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGSELS  184 (293)
T ss_pred             hc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hcccHHH
Confidence            44 58999999999887777777753     567899999999999986 4556777888899999999999 6778888


Q ss_pred             HHHHHHHHHhhcCCCCCCChhh--------hhchh-HHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           77 KRIATWTLSNLCGGKPRPIFDQ--------VRPCL-PTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        77 ~~~a~~~L~~l~~~~~~~~~~~--------~~~~i-~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      +..|..++..+..++.......        +...+ ..+.++.+.+++.+.++++.+..+++.+
T Consensus       185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999988874432221        12222 2334555678899999999999999976

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.082  Score=47.68  Aligned_cols=265  Identities=14%  Similarity=0.082  Sum_probs=141.4

Q ss_pred             CChHHHHHhh----CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLL----ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      |.+..++..+    .+++..++..|+++|++.++..|.-..... .-.+..++.-|.+..+.+++..++.+|..+.....
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~  332 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS  332 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence            4444444443    347789999999999999987443322222 22355666666466689999999999998887543


Q ss_pred             CCChh-hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHH-HHH--hCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           93 RPIFD-QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIE--AGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        93 ~~~~~-~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~--~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      ..+.. ..-++.-.+..+..+.+++.+..+...+..|+.. .....+. +.+  .+-...++-.+.++++.+. .||+..
T Consensus       333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l-~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~  410 (533)
T KOG2032|consen  333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL-AGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE  410 (533)
T ss_pred             hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH-cCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence            32211 1233444466677789999999998888877754 2222222 221  1122344455566777664 455555


Q ss_pred             hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHH-----HHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142          169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS-----NITAGNREQIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~-----nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                      ...+.-+-.          .+.+..++... - +....-...+-     .+....++.......+     ...++++.-+
T Consensus       411 ~~~c~p~l~----------rke~~~~~q~~-l-d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~-----~~~~f~sswe  473 (533)
T KOG2032|consen  411 LRTCYPNLV----------RKELYHLFQES-L-DTDMARFQAFYNQWCIQLNHIHPDILMLLLTE-----DQHIFSSSWE  473 (533)
T ss_pred             HHhcCchhH----------HHHHHHHHhhh-h-HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHh-----chhheecchH
Confidence            444422211          11222222211 0 00000111111     1222222322222211     1122333344


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      .+|..|...-.++..+..+..+...--.-+...|-.+...+-++++..+..|+..+..
T Consensus       474 ~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  474 QVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            6777777666666654333333332222345556666677888999999999887764

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=97.11  E-value=0.047  Score=46.29  Aligned_cols=206  Identities=11%  Similarity=0.049  Sum_probs=147.3

Q ss_pred             HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CC--Chhhh---hchhHHHHHhhccCCHHHHHHHHH
Q 037142           50 RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RP--IFDQV---RPCLPTLAQLVHSNDEHVMSNACW  123 (383)
Q Consensus        50 ~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~--~~~~~---~~~i~~l~~ll~~~~~~~~~~~~~  123 (383)
                      .....+.+.|.+..+++.+ ..-+-+.+..++.+..++-..+- .+  .....   ..++..+++--.+ .+++...+..
T Consensus        70 qLtqef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~  147 (342)
T KOG1566|consen   70 QLTQEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGN  147 (342)
T ss_pred             HHHHHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHH
Confidence            3445567889999999999 66678888889998888877652 22  11122   2344444444222 4777777777


Q ss_pred             HHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC----hHHHHHhhcccc
Q 037142          124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA----LPYLLGLLIDNH  199 (383)
Q Consensus       124 ~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~l~~ll~~~~  199 (383)
                      .+....++  ....+.+..+.-+.....+++.++-++...|..++..+.......+..++..+.    .+.--.++.+. 
T Consensus       148 mlrEcirh--e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-  224 (342)
T KOG1566|consen  148 MLRECIRH--EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-  224 (342)
T ss_pred             HHHHHHhh--HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-
Confidence            77777776  556666777778889999999999899999999998887555444443443322    34455667777 


Q ss_pred             chhHHHHHHHHHHHHhcCC---HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142          200 KTSIKNYACWIISNITAGN---REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                      +.-++..+...++.+..+.   ....+++-...-+..++.+|++++..++-+|..+..-+..+.
T Consensus       225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            9999999999999987543   233444445677999999999999999999999988888775

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.063  Score=44.40  Aligned_cols=196  Identities=17%  Similarity=0.215  Sum_probs=126.8

Q ss_pred             HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           14 VDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      -+...++.++..|.+  +.|-+|..|..+|+.+. +.          ..++.+-+.. +++-.++++.+..++..+-..+
T Consensus        64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~----------~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~  131 (289)
T KOG0567|consen   64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP----------ESLEILTKYI-KDPCKEVRETCELAIKRLEWKD  131 (289)
T ss_pred             ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch----------hhHHHHHHHh-cCCccccchHHHHHHHHHHHhh
Confidence            345678999999876  66888999999999887 22          3456666666 6777777777766666653221


Q ss_pred             ---------------CCCChhhhhchhHHHHHhhccCC-HH-HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142           92 ---------------PRPIFDQVRPCLPTLAQLVHSND-EH-VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG  154 (383)
Q Consensus        92 ---------------~~~~~~~~~~~i~~l~~ll~~~~-~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~  154 (383)
                                     |...  ...+-+.-+...+.+.+ +. -+..+...|.|+-..   +         .+..+.+-+.
T Consensus       132 ~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E---e---------aI~al~~~l~  197 (289)
T KOG0567|consen  132 IIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE---E---------AINALIDGLA  197 (289)
T ss_pred             ccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH---H---------HHHHHHHhcc
Confidence                           1111  11122333433333332 22 344555555555432   1         3566777777


Q ss_pred             CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142          155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP  233 (383)
Q Consensus       155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~  233 (383)
                      .++.-.++.+..+++.+-.           .-.++.+.+.|.. ..++-+|..|+.+|+.++..  +         .++.
T Consensus       198 ~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~v  255 (289)
T KOG0567|consen  198 DDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEV  255 (289)
T ss_pred             cchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHH
Confidence            7888888999999987742           2347777776643 33788999999999998742  2         4556


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhc
Q 037142          234 LVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       234 L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      |...+.++.+-|++.+..++.-+-
T Consensus       256 L~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  256 LKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHH
Confidence            677788888888888888776554

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.08  E-value=0.21  Score=45.01  Aligned_cols=161  Identities=16%  Similarity=0.152  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-------C------------------CCC--------hhHHHHHHH
Q 037142           36 QSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-------N------------------HEN--------LSMKRIATW   82 (383)
Q Consensus        36 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-------~------------------~~~--------~~~~~~a~~   82 (383)
                      .|+..|-.+....+.....+.+.+++..+++.+.       +                  ..+        ..+.+..+.
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            4556666666555555666677777777776652       1                  000        133444556


Q ss_pred             HHHhhcC-CC--CCCChhhh--hchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC
Q 037142           83 TLSNLCG-GK--PRPIFDQV--RPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG  154 (383)
Q Consensus        83 ~L~~l~~-~~--~~~~~~~~--~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~  154 (383)
                      ++..+.. ..  .......+  ..+...|...+++.   .+.+...++..+..+..+ .+.....+.+.|+++.+++.+.
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n-ePT~~~~l~e~Gl~~~~L~~i~  161 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN-EPTSFSILQEAGLIDAFLDAIT  161 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc-CCchhHHHHHcCChHHHHHHHh
Confidence            6666666 22  22222222  34455555666654   388999999999999998 8888899999999999999988


Q ss_pred             -C---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142          155 -H---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN  198 (383)
Q Consensus       155 -~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~  198 (383)
                       .   ++.++....-.+|+.+|-+.. ..+.+.+.+.++.+++++.++
T Consensus       162 ~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  162 AKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             ccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCH
Confidence             4   677888888899999987665 455577889999999888764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.06  E-value=0.0025  Score=46.07  Aligned_cols=70  Identities=17%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l  351 (383)
                      ++..|+++|. +.|+.+...|+.-|..+++..+.             -+.++...|+.+.+.+|+.|+|++|+..|+..+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5788888884 45788888899999999987543             356689999999999999999999999999998


Q ss_pred             HHhc
Q 037142          352 ETYW  355 (383)
Q Consensus       352 ~~~~  355 (383)
                      ..+.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.023  Score=54.48  Aligned_cols=219  Identities=12%  Similarity=0.101  Sum_probs=136.7

Q ss_pred             CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHH
Q 037142           70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRL  149 (383)
Q Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l  149 (383)
                      .++.+.++..++..+..+.+...........+++.+.+..+++.|+-+--+++..+..||.. .+        ..++|.+
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~--------e~il~dL  807 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YP--------EDILPDL  807 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cc--------hhhHHHH
Confidence            35567788899999999998654556666789999999999999999999999988888876 22        2356666


Q ss_pred             HHh-cCC---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHH
Q 037142          150 VKL-LGH---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAV  225 (383)
Q Consensus       150 ~~~-L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~  225 (383)
                      .+. ...   ..++.+...-.++.+++..-.+....... -++..+++.+.++ +...|..++..+++++....-.....
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~  885 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDF  885 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence            663 322   11233333345555555433332222222 4566677777777 88889999999999986432211111


Q ss_pred             HhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHH--HHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHH
Q 037142          226 IDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYL--EREGCIKPLCDLLLCP-DPQIVTVCLKALENIL  300 (383)
Q Consensus       226 ~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l--~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~  300 (383)
                      + +.++..++.+.. ++++.+|+.|+..+..+..+.+.+....+  .-.+....+....... +..++..+..++..+-
T Consensus       886 ~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  886 F-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             H-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            1 223444455444 46889999999999999876543333322  1123444455544443 4445555655555443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.03  E-value=0.034  Score=52.28  Aligned_cols=194  Identities=15%  Similarity=0.138  Sum_probs=140.8

Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ...+++|.|++++...|..+|...+.-+-.....    .-+..++..++|.+...+.+.++.++...+.++..++..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence            5578999999999999999998888777776654    223455567899999999999999999999999998854332


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      .   .++...++.+..+-.+. +..+|.+..-+++.++.......   .+.-.......-+.++-..-|..+.++++...
T Consensus       403 ~---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 R---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             h---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence            2   34445566666665544 88899999999998876532222   12222334444567777788888888887776


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142          258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      ..-+..   . +...+++.++-+..+++..++..|..++..+.....+.
T Consensus       476 ~~~~~~---~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQS---E-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchh---h-hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            543211   1 23458888999998999999999998888888765554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=97.03  E-value=0.094  Score=47.01  Aligned_cols=276  Identities=19%  Similarity=0.152  Sum_probs=145.2

Q ss_pred             hHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH-HHHHHhhcCCCCCCCh
Q 037142           19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA-TWTLSNLCGGKPRPIF   96 (383)
Q Consensus        19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a-~~~L~~l~~~~~~~~~   96 (383)
                      +..++.=+.+ ....+|..++--|..-+. ++.++..+...|.+..+++.+...++..+...+ +.++.-++.+.+....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4555555553 556777777776766665 579999999999999999999544444344433 4445555555444333


Q ss_pred             hhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc---C------CCChhhHHHHHH
Q 037142           97 DQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL---G------HPSQSVLTQALH  166 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L---~------~~~~~v~~~a~~  166 (383)
                      .........+.+++... .........      ..  .........+ .....+...+   .      +...+-+..++.
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            33456667767777611 100000000      00  0001111110 0111111111   1      123344555666


Q ss_pred             HHhhhh--------------cCCCccccceecCCChHHHHHhhcc----cc-----------chhHHHHHHHHHHHHhcC
Q 037142          167 TVGNIA--------------RGDYSQTLYIINCGALPYLLGLLID----NH-----------KTSIKNYACWIISNITAG  217 (383)
Q Consensus       167 ~L~~l~--------------~~~~~~~~~l~~~~~i~~l~~ll~~----~~-----------~~~~~~~a~~~l~nl~~~  217 (383)
                      ++-.++              ...+...+.+.+.|+++.++..+..    ..           +-.....++++|-|.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            665553              1112234556667889999888752    10           112345578888888876


Q ss_pred             CHHHHHHHHh--cCChHHHHHHh-h---cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH------HHhh-cC--
Q 037142          218 NREQIQAVID--AGLIGPLVNLL-Q---NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP------LCDL-LL--  282 (383)
Q Consensus       218 ~~~~~~~~~~--~~~l~~L~~ll-~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~------L~~l-l~--  282 (383)
                      +.+...++..  .+.++.+...+ .   ....++...++.++.|++.++ ++.+..+...++...      -+.. +.  
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~  331 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLP  331 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhccccccc
Confidence            6666666653  33333333332 2   233445677899999999874 344444443322211      1111 11  


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHhchh
Q 037142          283 -----CPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       283 -----~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                           ....+...-++.++.|+++.++.
T Consensus       332 ~~~~~~~~~D~~IL~Lg~LINL~E~s~~  359 (361)
T PF07814_consen  332 NYVPEESSFDILILALGLLINLVEHSEA  359 (361)
T ss_pred             ccccccccchHHHHHHHhHHHheeeCcc
Confidence                 11236677788888898876543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.12  Score=46.59  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=100.7

Q ss_pred             HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CCh
Q 037142           80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQ  158 (383)
Q Consensus        80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~  158 (383)
                      -...++.+.............+.+..+..-..+++..++..++.+|.+.+.+ .++........ .+..++.-|.+ .+.
T Consensus       237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~-~ldaii~gL~D~~~~  314 (533)
T KOG2032|consen  237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTT-QLDAIIRGLYDDLNE  314 (533)
T ss_pred             HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHH-HHHHHHHHHhcCCcc
Confidence            3344444444332222233345555555555677889999999999999998 66666665554 45566655554 668


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCC---ChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHHHHHh--cCChH
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCG---ALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQAVID--AGLIG  232 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~--~~~l~  232 (383)
                      +|.-.++.+|..+.......   -+..+   +...+..++.+. ++++|..+...++.++.... ...+.+.+  .+...
T Consensus       315 ~V~leam~~Lt~v~~~~~~~---~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~  390 (533)
T KOG2032|consen  315 EVQLEAMKCLTMVLEKASND---DLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA  390 (533)
T ss_pred             HHHHHHHHHHHHHHHhhhhc---chhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc
Confidence            89888888888776432211   12222   334556677777 99999999999988875221 11111111  22233


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          233 PLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       233 ~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      .+...++++++.+-. ||.+....+
T Consensus       391 ~lllhl~d~~p~va~-ACr~~~~~c  414 (533)
T KOG2032|consen  391 PLLLHLQDPNPYVAR-ACRSELRTC  414 (533)
T ss_pred             cceeeeCCCChHHHH-HHHHHHHhc
Confidence            444445566665544 444444444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.01  E-value=0.0087  Score=59.15  Aligned_cols=140  Identities=12%  Similarity=0.138  Sum_probs=110.5

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC  278 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~  278 (383)
                      +|.++.+|.-+++.++.-+.+..+.     -+|.|+.+|. ++++.+|-.++.+++-++-.- +..+.     ..-+.|.
T Consensus       936 dp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f-pnlie-----~~T~~Ly 1004 (1251)
T KOG0414|consen  936 DPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PNLIE-----PWTEHLY 1004 (1251)
T ss_pred             CHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc-ccccc-----hhhHHHH
Confidence            7899999999999998777665543     4788999997 789999999999999998652 22222     2577899


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      ..+.+.++.+++.|+..+..++-                  ..+++--|.+..+-.++.+++++|+..|......+-..+
T Consensus      1005 ~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999985                  345777888888999999999999999986666666555


Q ss_pred             C--CCCCccccc
Q 037142          359 V--VGPQPGLLY  368 (383)
Q Consensus       359 ~--~~~~~~~~~  368 (383)
                      +  +.-+|+.+.
T Consensus      1067 n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1067 NTIYNLLPDILS 1078 (1251)
T ss_pred             cchhhhchHHHH
Confidence            4  244444433

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.95  E-value=0.61  Score=48.18  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      +.+..++..+..+...+|..|++||..+...++....   ...+-..+..-+ .+....+|+.|+..++......+    
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~----  887 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIP----  887 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccH----
Confidence            4667777888888899999999999999987665332   123333445555 45567889999998887765443    


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      .........+..-+.++...+|+.++..++.+|..
T Consensus       888 e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e  922 (1692)
T KOG1020|consen  888 ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE  922 (1692)
T ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence            23344556666777788888999999999988876

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.29  Score=48.53  Aligned_cols=156  Identities=14%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~  175 (383)
                      ...+.++..|+..+++.|..++..++..+..++.. .+   ..+.+ .++...++++.. ++++..+-++-+|+.++...
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r-lp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rG  411 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR-LP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRG  411 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc-Cc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence            34467888888889999999999999999999987 33   22222 245666665554 45778889999999998432


Q ss_pred             CccccceecCCChHHHHHhhccc-------cchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDN-------HKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKK  247 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~-------~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~  247 (383)
                      =-....+  ..+++.+++-+..+       ....+|..|++++..++... +.....+++.=.-..|...+.+++..+|+
T Consensus       412 lLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR  489 (1133)
T KOG1943|consen  412 LLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR  489 (1133)
T ss_pred             CcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence            1111100  14566666665432       14578999999999998743 34344433322223344556678889999


Q ss_pred             HHHHHHHHhcCC
Q 037142          248 EAAWAISNATFG  259 (383)
Q Consensus       248 ~a~~~l~~l~~~  259 (383)
                      .|..++......
T Consensus       490 AAsAAlqE~VGR  501 (1133)
T KOG1943|consen  490 AASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHHHhcc
Confidence            998888766543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.91  E-value=0.3  Score=44.11  Aligned_cols=234  Identities=14%  Similarity=0.131  Sum_probs=143.4

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCCh---HHHHHHHhcCChHHHHHHhcC------CCChhHHHHHHHHHHhhcCCC
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESP---RFRDLVLGEAALIPLLTQLNN------HENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~~L~~------~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      .+..+++..+++-|..|+...+.+....+   ..++.+.+.=+.+.+-+++..      .++.-.+..++.+|..+|+..
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            36677777888889999999999986543   456667777667888888842      234445677888999999987


Q ss_pred             CCCChhhhhchhHHHHHhhccC---C----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh-HHH
Q 037142           92 PRPIFDQVRPCLPTLAQLVHSN---D----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV-LTQ  163 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~ll~~~---~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~  163 (383)
                      +-.....+-+-||.++.++...   |    ..+...+..+|..++..  +.....++..|.++.+.++-.-++.+- ..-
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~--e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA--EAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC--CchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            6556666678899999998732   2    34778888999999987  667788888999999987765443222 233


Q ss_pred             HHHHHhhhhcCCC---ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH--HHHHHHHhcC----ChHHH
Q 037142          164 ALHTVGNIARGDY---SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR--EQIQAVIDAG----LIGPL  234 (383)
Q Consensus       164 a~~~L~~l~~~~~---~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~--~~~~~~~~~~----~l~~L  234 (383)
                      ++..+.-.....+   +....+.  .++..+..=+... +...+.+.|+.|..+.....  -........+    ...-+
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~  249 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV  249 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence            3443333332221   1111111  1122222222334 66788889999986543322  1111111111    12234


Q ss_pred             HHHhhcC-chhHHHHHHHHHHHhcCC
Q 037142          235 VNLLQNA-VFYIKKEAAWAISNATFG  259 (383)
Q Consensus       235 ~~ll~~~-~~~v~~~a~~~l~~l~~~  259 (383)
                      ..++.+. .+.-|..|.....|+++.
T Consensus       250 ~~IL~~kv~p~qr~pAL~Laa~~~hi  275 (698)
T KOG2611|consen  250 VAILQNKVAPSQRLPALILAANMMHI  275 (698)
T ss_pred             HHHHhcccCchhcChHHHHHHHHHHH
Confidence            5556543 555666666666666544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.19  Score=47.69  Aligned_cols=177  Identities=18%  Similarity=0.103  Sum_probs=108.8

Q ss_pred             cHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          145 VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       145 ~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      .=+.+-+++.+.|+-++.....++..-=.+..       +.+.+..|+..--++.+.+||+.|.-+|+-++..+++.   
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence            33455666777788777776655532211111       23567777777433449999999999999988877553   


Q ss_pred             HHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          225 VIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                            .+..+.+|. +-++.||.-|+.+|+-.|........        +..|-.+..++..-||+.|+-++.-++...
T Consensus       590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA--------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA--------INLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH--------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                  455566665 56999999999999998887432221        333333444566678888988888777654


Q ss_pred             hhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH-HHhcCCCC
Q 037142          304 EAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL-ETYWCGRV  359 (383)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l-~~~~~~~~  359 (383)
                      ...-..        .      -.|+.+.+.+++..++++.--+--.+| +.+.+.+.
T Consensus       656 t~~~~p--------k------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGG  698 (929)
T KOG2062|consen  656 TEQLCP--------K------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGG  698 (929)
T ss_pred             ccccCc--------h------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCC
Confidence            332211        1      122345667777777776533333333 44444443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.86  E-value=0.061  Score=50.19  Aligned_cols=123  Identities=19%  Similarity=0.268  Sum_probs=86.5

Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH
Q 037142           72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK  151 (383)
Q Consensus        72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~  151 (383)
                      .+...++-|...+.....+-|    .....++..++.+.+++|..+|.+|+..|..+|.. .++.+..     +...|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~k-----vaDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSK-----VADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhH-----HHHHHHH
Confidence            368889999999999988765    34567899999999999999999999999999987 5555554     4678999


Q ss_pred             hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc---cccchhHHHHHHHHHHH
Q 037142          152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI---DNHKTSIKNYACWIISN  213 (383)
Q Consensus       152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~---~~~~~~~~~~a~~~l~n  213 (383)
                      +|.++++.-...+=.+|..+...++.        +.+..+..-+.   .. ++.+|+.++..|..
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~  159 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSG-DEQVRERALKFLRE  159 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS--HHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccC-chHHHHHHHHHHHH
Confidence            99999887777777777777655553        34555555554   45 78899999988754

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.00079  Score=59.80  Aligned_cols=184  Identities=15%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             CChhHHHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC----CCchH--HHHHHHhC
Q 037142           72 ENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG----GKNDE--IQAVIEAG  144 (383)
Q Consensus        72 ~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~~~--~~~~~~~~  144 (383)
                      .+.-++..|++++.-+.-+.. ..+.....+....++..+.++....+..++|++++++..    .++..  ...+.. .
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-L  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-H
Confidence            344456677778777777763 335556678888888888888899999999999998742    11111  111111 1


Q ss_pred             cHHHHHHhcC---CCChhhHHHHHHHHhhhhcCCCccc---cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142          145 VCPRLVKLLG---HPSQSVLTQALHTVGNIARGDYSQT---LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       145 ~i~~l~~~L~---~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      .+..+...-.   -++++|+..+.++|+|+..--+...   ......+.+..+......+....|+-++|.+++|+..+.
T Consensus       482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            2333333221   2678999999999999974322110   001111222222222222336789999999999998754


Q ss_pred             HHHHHHHHh----cCChHHHHHHhh-cCchhHHHHHHHHHHHhcCC
Q 037142          219 REQIQAVID----AGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       219 ~~~~~~~~~----~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~  259 (383)
                      .-   .+.+    ..+++.|..++. +.+.+||..|+.+|..-...
T Consensus       562 a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  562 AL---PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             cc---cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            11   1122    234566666664 57999999999999877654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.81  E-value=0.036  Score=48.39  Aligned_cols=170  Identities=16%  Similarity=0.051  Sum_probs=107.3

Q ss_pred             CChHHHH-HhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142           17 GAVPIFV-KLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-   94 (383)
Q Consensus        17 g~i~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-   94 (383)
                      +++..|+ ..+.+.++.+|+.++.+||-++--+.+.....     ++.+.+.+ +..+..++..|+.++.-+....... 
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444443 66778999999999999999997655443333     56778888 4558999999999998887644211 


Q ss_pred             -Ch-------hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHH
Q 037142           95 -IF-------DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLT  162 (383)
Q Consensus        95 -~~-------~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~  162 (383)
                       +.       .....++..+.+.+.+.+++++..++..++.|... ..-..    ...++..|+-..-+    ++..++.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~-~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS-GRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-CCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence             11       12356888889999999999999999999998765 21111    01233444333332    3455555


Q ss_pred             HHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142          163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN  198 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~  198 (383)
                      .....+-.++...+.... .+...+++.+..+....
T Consensus       175 ~L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence            555555666655543332 33344555555554433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.78  E-value=0.0017  Score=34.78  Aligned_cols=29  Identities=38%  Similarity=0.669  Sum_probs=25.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAA   46 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~   46 (383)
                      ++|.++++++++++++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.74  E-value=0.56  Score=46.28  Aligned_cols=184  Identities=15%  Similarity=0.154  Sum_probs=115.7

Q ss_pred             HHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCC----hhHH
Q 037142           10 KKAVVDHGAVPIFVKLLAS-----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHEN----LSMK   77 (383)
Q Consensus        10 ~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~----~~~~   77 (383)
                      ...+.+.|++..++.++.+     ...+.....+..|..++.- +.+|+.+++.|+++.|++.+.   ....    ..+.
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            4556678999999999986     2335566666766666654 689999999999999998884   2322    5666


Q ss_pred             HHHHHHHHhhcCCCCCCChh-------------hhhchhHHHHHhhcc----CCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           78 RIATWTLSNLCGGKPRPIFD-------------QVRPCLPTLAQLVHS----NDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        78 ~~a~~~L~~l~~~~~~~~~~-------------~~~~~i~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      +..+.++..+..........             ....-+..+++.+.+    .++.+....+..|-+|+.+ ..+..+.+
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G-~~e~m~~L  267 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG-NEEKMDAL  267 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC-CHHHHHHH
Confidence            66666666655433111000             022336666666663    4689999999999999998 77777766


Q ss_pred             HHhCcHHHHHHhcCC--CChhhHHHHHHHHhhhhcCCC------ccccceecCCChHHHHHhhcc
Q 037142          141 IEAGVCPRLVKLLGH--PSQSVLTQALHTVGNIARGDY------SQTLYIINCGALPYLLGLLID  197 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~i~~l~~ll~~  197 (383)
                      ++. + ...+++=+-  ....--...+.+++.++.+-+      ...+.+++.|++...+..|..
T Consensus       268 v~~-F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~  330 (802)
T PF13764_consen  268 VEH-F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK  330 (802)
T ss_pred             HHH-H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence            654 2 332232111  111111234667777765433      234556778888877777653

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.74  E-value=0.039  Score=45.81  Aligned_cols=183  Identities=14%  Similarity=0.106  Sum_probs=114.2

Q ss_pred             ChhHHHHHHHHHHhhcCCCCCCChhhh--hchhHHHHHh-------hccCC--H---HHHHHHHHHHHHhccCCCchHHH
Q 037142           73 NLSMKRIATWTLSNLCGGKPRPIFDQV--RPCLPTLAQL-------VHSND--E---HVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        73 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~l~~l-------l~~~~--~---~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      +++.++.|+.-|+.--+..+.......  .|.+..+++=       +..+.  .   .-..+++..+..++.+  ++-..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh--petr~   85 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH--PETRM   85 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTTHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC--hHHHH
Confidence            566677776666554433232222222  3444444331       12221  2   3334455556677777  56667


Q ss_pred             HHHHhCcHHHHHHhcCCC-----ChhhHHHHHHHHhhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          139 AVIEAGVCPRLVKLLGHP-----SQSVLTQALHTVGNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~-----~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                      .+.++.+.-.+..+|...     -+.++-.++++++.++..++ +.+..+.+.+++|..+..+..+ ++--+..|.+++.
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlq  164 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQ  164 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHH
Confidence            788888877788888652     36788899999999996544 5567778899999999999998 8888999999998


Q ss_pred             HHhcCCHHHHHHHHh--------cCChHHHHHH-hhcCchhHHHHHHHHHHHhcCC
Q 037142          213 NITAGNREQIQAVID--------AGLIGPLVNL-LQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       213 nl~~~~~~~~~~~~~--------~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      .+...+ ....++-+        ..++..++.- ...+++.+-+..+.+-..++.+
T Consensus       165 KIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  165 KILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            886543 33333321        1234444433 3457889999999999999987

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.74  E-value=0.056  Score=45.18  Aligned_cols=105  Identities=24%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHH
Q 037142          246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVE  324 (383)
Q Consensus       246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  324 (383)
                      ...|..+|.-++--. +.....+.+...+..+++++. ...+.++..++.+|..++...+.+             .+.|+
T Consensus       108 i~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~FE  173 (257)
T PF08045_consen  108 IALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDFE  173 (257)
T ss_pred             HHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHHH
Confidence            344556666665543 455666667899999999995 467899999999999888765543             55699


Q ss_pred             HhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCCCCCc
Q 037142          325 EAKGLEKIENLQRHD--NYEIHEKSAKILETYWCGRVVGPQP  364 (383)
Q Consensus       325 ~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~  364 (383)
                      +.+|+..+..+..+.  +.+++-++...|.-|..++.+....
T Consensus       174 ~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~  215 (257)
T PF08045_consen  174 ELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPP  215 (257)
T ss_pred             HhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCc
Confidence            999999999997764  5679999999999888888765443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=96.73  E-value=0.31  Score=41.47  Aligned_cols=224  Identities=13%  Similarity=0.019  Sum_probs=139.9

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      ..|-..|.++++.+|..|+..|+.+...-+..   .+...-+..|+.++.+. .|......++..+..+.... ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            45667888999999999999999887543321   12233355666655321 25555666677777777443 222222


Q ss_pred             hhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC
Q 037142           99 VRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        99 ~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~  175 (383)
                      ...++..+.+...  +.....|..+...+..+..+ ..+....+- .+++..+++.+.. .||+-...+...+..+....
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~-~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN-HREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH-hHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence            3344444444333  22367788888888888866 333333332 3477778888866 78999889999888887655


Q ss_pred             CccccceecCCChHHHHHhhcc--------cc-c--hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          176 YSQTLYIINCGALPYLLGLLID--------NH-K--TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~--------~~-~--~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      +.       ....+-+.+.+..        +. +  .-.+..--..|.+....++...     .-.+|.|++-|.++...
T Consensus       156 ~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~  223 (262)
T PF14500_consen  156 DI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPS  223 (262)
T ss_pred             cc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcH
Confidence            41       2345555555431        11 1  1234444455555555554443     33688999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 037142          245 IKKEAAWAISNATFGGT  261 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~  261 (383)
                      +|..+..+|..++..-+
T Consensus       224 ~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  224 VKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            99999999988876533

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.70  E-value=0.39  Score=47.31  Aligned_cols=239  Identities=17%  Similarity=0.173  Sum_probs=147.6

Q ss_pred             hchhHHHHHhhcc-----CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC----CCC----hhhHHHHHH
Q 037142          100 RPCLPTLAQLVHS-----NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG----HPS----QSVLTQALH  166 (383)
Q Consensus       100 ~~~i~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~----~~~----~~v~~~a~~  166 (383)
                      .|++..++.++.+     .+.+....++..|...+.-  ..+.+.+.+.+.++.|+..+.    .+.    ..+....+.
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            4577777777763     3456777777778777765  678888888999999988874    333    677777777


Q ss_pred             HHhhhhcCCCcc-c---cceecC--------CChHHHHHhhccc---cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCCh
Q 037142          167 TVGNIARGDYSQ-T---LYIINC--------GALPYLLGLLIDN---HKTSIKNYACWIISNITAGNREQIQAVIDAGLI  231 (383)
Q Consensus       167 ~L~~l~~~~~~~-~---~~l~~~--------~~i~~l~~ll~~~---~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l  231 (383)
                      ++..+....... .   ......        ..+..+++.+.+.   .++.+....+++|.+++.++++..+.++++  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            777766332211 1   001111        2255566666543   168889999999999999998888877653  1


Q ss_pred             HHHHHHhhc-----CchhHHHHHHHHHHHhcCCC-----CHHHHHHHHHcCChHHHHhhcCCC--------CHHH-----
Q 037142          232 GPLVNLLQN-----AVFYIKKEAAWAISNATFGG-----THEQIKYLEREGCIKPLCDLLLCP--------DPQI-----  288 (383)
Q Consensus       232 ~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v-----  288 (383)
                      ....++=.-     ++..+.   +.+++.++...     +......+++.|++...++.+...        +++-     
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            222222111     122232   33444443321     356778888999999888766432        2222     


Q ss_pred             ---HHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 037142          289 ---VTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       289 ---~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                         ...++..|.-++......|              .+...++++.+-.|-. +.+..|-..|..+|+.+.+.++
T Consensus       349 ~psLp~iL~lL~GLa~gh~~tQ--------------~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEPTQ--------------LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHHHH--------------HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence               2345555665655443332              2345566666666633 3367799999999998888665

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.68  E-value=0.0089  Score=57.56  Aligned_cols=151  Identities=20%  Similarity=0.166  Sum_probs=116.7

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ..++|.|++.+.+.+...+..-+.+|.++...-|...-.---...+|.|++.| +-+|..++..+..++.-+....+...
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccc
Confidence            46899999999987777888888889888876554221111134577888888 78899999999999988887766666


Q ss_pred             hhhhhchhHHHHHhhccCC---HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           96 FDQVRPCLPTLAQLVHSND---EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      ......++|.++.+=.+.+   ..+|..|+.++..+.+..+......... .++..+...|.++..-+|..|.++=
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~-~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP-LVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH-HHHHHhhhccCcHHHHHHHHHHHHh
Confidence            6677889999999888665   7899999999999999525544444444 4889999999999988998887653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.67  E-value=0.12  Score=50.31  Aligned_cols=175  Identities=16%  Similarity=0.187  Sum_probs=111.0

Q ss_pred             HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCC-hHHHHHHhhc-Cchh
Q 037142          167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL-IGPLVNLLQN-AVFY  244 (383)
Q Consensus       167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~-l~~L~~ll~~-~~~~  244 (383)
                      ++++++..++.....+++.|++..+..++..-.+..++..+++.++|++...+........... ...+..++.. .+.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7889998888889999999999999999986558899999999999998643221111111101 1122223333 2336


Q ss_pred             HHHHHHHHHHHhcCCCC-------HH-HHHHH--------------HHcCChHH-HHhhcC-CCCHHHHHHHHHHHHHHH
Q 037142          245 IKKEAAWAISNATFGGT-------HE-QIKYL--------------EREGCIKP-LCDLLL-CPDPQIVTVCLKALENIL  300 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~-------~~-~~~~l--------------~~~~~i~~-L~~ll~-~~~~~v~~~al~~l~~l~  300 (383)
                      .-..|+..++.+..++.       .+ ..+.+              .....+.+ +..++. +..+..+..|+|++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            66677777777766421       01 11111              11122333 545554 456788999999999999


Q ss_pred             HhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 037142          301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETY  354 (383)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~  354 (383)
                      +..+             .+.+.+.+.|+++.+.++-.. ...++...+..++...
T Consensus       654 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  654 EQNK-------------EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HcCh-------------hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            7543             366778899998988877433 3445666666666543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.62  E-value=0.081  Score=47.39  Aligned_cols=176  Identities=13%  Similarity=0.160  Sum_probs=113.4

Q ss_pred             ChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142           30 SDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ  108 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~  108 (383)
                      ..+-+..|+.-|..+.. ++....+... ..++..+++.|.++.+...+..|+++|..++...+.+-.....-.+..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            45566777775555443 3333333222 233567888886557889999999999999999876655555667777777


Q ss_pred             hhccCCHHHHHHHHHHH-HHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCC
Q 037142          109 LVHSNDEHVMSNACWGL-SLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA  187 (383)
Q Consensus       109 ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  187 (383)
                      .-.+.+.++...|.... ..++.. .+..        .+..+..++...|......++..+..++..-+..--..+=..+
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~-~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~di  449 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASH-LPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDI  449 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhh-Cchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhh
Confidence            77777766666665543 344443 2211        2233444444467677777888888887543311111122367


Q ss_pred             hHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          188 LPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      .|.+++...+. +..+|+.|+++|-.+..
T Consensus       450 aP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            88888888888 99999999999987763

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.62  E-value=0.68  Score=44.05  Aligned_cols=103  Identities=20%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      |.+..+++.. .+++..++..++..|..+.......+.....++...+..-+.+..+.+|.+|..+|+.+-....++...
T Consensus        85 ~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~  163 (892)
T KOG2025|consen   85 GTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP  163 (892)
T ss_pred             HHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence            3344445554 567889999999999999986666677788899999999999999999999999999998541222222


Q ss_pred             HHHHhCcHHHHHHhcCC-CChhhHHHHHHHH
Q 037142          139 AVIEAGVCPRLVKLLGH-PSQSVLTQALHTV  168 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L  168 (383)
                            +...+..+++. ++++|+..++..+
T Consensus       164 ------v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  164 ------VVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             ------HHHHHHHHHhcCCcHHHHHHHHHhh
Confidence                  34566666654 8899999887665

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.56  E-value=0.012  Score=45.81  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=99.4

Q ss_pred             HHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          147 PRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       147 ~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      ..++..|.  ...++++..++-++..+...   ..+ -...-+-+.+...+... +.+-...++.++..+-...++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLLDA---ARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444443  35677888888888777411   111 11112334444555555 6667888999999999999999888


Q ss_pred             HH-hcCChHHHHHHhh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 037142          225 VI-DAGLIGPLVNLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQ-IVTVCLKALEN  298 (383)
Q Consensus       225 ~~-~~~~l~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~al~~l~~  298 (383)
                      ++ ..|+++.+..++.  ..+..+...++.+|..-|..   +.+...+..++++.|-+.++. ++.. ++..|+-+|+.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            88 7889999999998  67888999999998887765   444544556789999999964 4555 77777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.56  E-value=0.019  Score=44.68  Aligned_cols=147  Identities=16%  Similarity=0.074  Sum_probs=98.5

Q ss_pred             ChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142          187 ALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI  265 (383)
Q Consensus       187 ~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  265 (383)
                      -++.++..+.. ...+++|..+..++..+.   +...+. ....+-+.+-..+..++.+-...++.++..+--. .++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence            35556666654 337889999999998884   222222 2333445556666666677788888999888766 45655


Q ss_pred             HHHH-HcCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh-cCCCH
Q 037142          266 KYLE-REGCIKPLCDLLL--CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ-RHDNY  341 (383)
Q Consensus       266 ~~l~-~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~  341 (383)
                      ..++ ..|+++.+..+..  +++..++..++.+|..-+....              .+. +....+++-|+++. .++++
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~-~I~~~~~~~L~~~~~~~~~~  143 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRT-FISKNYVSWLKELYKNSKDD  143 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHH-CCHHHCHHHHHHHTTTCC-H
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHH-HHHHHHHHHHHHHHccccch
Confidence            5555 5799999999998  7788888888888865553222              233 33555679999998 46666


Q ss_pred             H-HHHHHHHHHHH
Q 037142          342 E-IHEKSAKILET  353 (383)
Q Consensus       342 ~-v~~~a~~~l~~  353 (383)
                      . ++-+|.-.|.+
T Consensus       144 ~~ir~~A~v~L~K  156 (157)
T PF11701_consen  144 SEIRVLAAVGLCK  156 (157)
T ss_dssp             H-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            6 78888777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.52  E-value=0.13  Score=48.48  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=113.6

Q ss_pred             hHHHHHhhCC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           19 VPIFVKLLAS----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        19 i~~L~~lL~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      -|...+..++    +|++++..|.-+|..+..-+.++...     .+|.++..+.+++++.++.+|+-.++-+.....  
T Consensus       894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN--  966 (1128)
T COG5098         894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN--  966 (1128)
T ss_pred             hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehh--
Confidence            3444445544    78999999999999887644444332     368999999779999999999988887765321  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                        ......-.+|.+-+.+.+..+++.++.++.++.-. ..     +--.|-.+.+..+|.++|.++..-|-..+..++..
T Consensus       967 --~~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         967 --TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             --hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence              12344567788888899999999999999998854 11     11236789999999999999998888888888865


Q ss_pred             CCccccceecCCChHHHHHh
Q 037142          175 DYSQTLYIINCGALPYLLGL  194 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~l  194 (383)
                      +...     -.|+++....+
T Consensus      1039 dNt~-----yn~fidifs~l 1053 (1128)
T COG5098        1039 DNTM-----YNGFIDIFSTL 1053 (1128)
T ss_pred             ccch-----hhhhHHHHHHc
Confidence            5432     23666554433

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.49  E-value=0.081  Score=51.90  Aligned_cols=190  Identities=11%  Similarity=0.033  Sum_probs=135.9

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      .+-+.|-.-+.+.++.-|..|+..+........ ........|.+-.++.....+.|..+...++.+|..++........
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            344556666777899999999999988876543 1111111244455555555677888899999999999987655566


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      ....+.+|.++..+.+....++..+..++-..+.. .+  .     ....+.+...+++.++.++..+...+.......+
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-~~--l-----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~  403 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-TP--L-----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG  403 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-cc--H-----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence            66788999999999998888888888777776643 11  1     1357888999999999999998877776665444


Q ss_pred             -ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          177 -SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       177 -~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                       .....-.-.+.++.++....+. +..||..|..+++-+..
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence             2222222235677788888888 99999999999988764

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.34  E-value=0.0075  Score=32.25  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             hhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142          102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus       102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      ++|.+.++++++++++|..++++|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998854

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.32  E-value=0.042  Score=36.04  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037142          204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREG  272 (383)
Q Consensus       204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~  272 (383)
                      .+.++|++++++... .....+.+.++++.++++.. ++...+|-.|.++|+-++..  .+..+.+-+.|
T Consensus         4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence            578999999998754 66666667899999999987 57899999999999999876  67777666555

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=1.1  Score=43.14  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....+.+-.++.++...+...++.++.++... ..   +.+..  .+..+-.++.++..-++.+|.++|..++...+.
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~  315 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-NS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ  315 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-CH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence            45677777888888889999999999888865 22   22222  467777888889999999999999999866654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.26  E-value=0.091  Score=53.73  Aligned_cols=166  Identities=13%  Similarity=0.103  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc
Q 037142          119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN  198 (383)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~  198 (383)
                      .++.|....++..  .+..+.+ + +++..++..+..+...++..|++||..++..++.   .+....+...+..-+.+.
T Consensus       795 ~~a~li~~~la~~--r~f~~sf-D-~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~Ds  867 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHA--RSFSQSF-D-PYLKLILSVLGENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDS  867 (1692)
T ss_pred             hhHHHHHHHHHhh--hHHHHhh-H-HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccc
Confidence            3455555555543  2222222 2 4678888999999999999999999999987763   233344455555666666


Q ss_pred             cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142          199 HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC  278 (383)
Q Consensus       199 ~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~  278 (383)
                       ...||++|+..+|..+...++......     ..+..-+.+....||+.+...+..+|...  +....     ....+.
T Consensus       868 -sasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~-----i~~~ca  934 (1692)
T KOG1020|consen  868 -SASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEET--PDFSK-----IVDMCA  934 (1692)
T ss_pred             -hhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhh-----HHHHHH
Confidence             889999999999999887777665543     35666667788899999999999998763  12222     233444


Q ss_pred             hhcC---CCCHHHHHHHHHHHHHHHHhch
Q 037142          279 DLLL---CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       279 ~ll~---~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +++.   +++..++.-+...+.+++....
T Consensus       935 kmlrRv~DEEg~I~kLv~etf~klWF~p~  963 (1692)
T KOG1020|consen  935 KMLRRVNDEEGNIKKLVRETFLKLWFTPV  963 (1692)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHhccCC
Confidence            4443   3333478888888888775443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.19  E-value=1  Score=41.55  Aligned_cols=166  Identities=11%  Similarity=0.056  Sum_probs=121.8

Q ss_pred             hhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC----hhhHHHHHHHHhhhhcCCCc
Q 037142          102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS----QSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus       102 ~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~----~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....+...+.++++..+..+...+..++..  ......++....+..|..++.+++    ..+...++.++..+..+.-.
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            345567777788877777788888888876  778888888778899999998854    46777778888777655431


Q ss_pred             cccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          178 QTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                       .-..+...++.....+.... .+..+-..|+..+-+++.+++...+.+.+.--+..|+..++..+..++..|...+-.+
T Consensus       162 -sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 -SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             -eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence             12223334454444444221 1567788899999999999988888888888899999999999999999988888888


Q ss_pred             cCCCCHHHHHHHHH
Q 037142          257 TFGGTHEQIKYLER  270 (383)
Q Consensus       257 ~~~~~~~~~~~l~~  270 (383)
                      .....+...+.+.+
T Consensus       241 ~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  241 FRKAPDDKRFEMAK  254 (713)
T ss_pred             HhhCChHHHHHHHH
Confidence            77665555555544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.17  E-value=0.076  Score=50.03  Aligned_cols=194  Identities=12%  Similarity=0.079  Sum_probs=136.3

Q ss_pred             HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142          141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE  220 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~  220 (383)
                      ++.+++|.++++.+..|..+|...+.-+-.+..+   ..+..++..+++.+...+.+. ++.+|+..+.++..++..-  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL--  400 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKL--  400 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhh--
Confidence            4457899999999999999998777777666543   334567778999999999999 9999999999999988532  


Q ss_pred             HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142          221 QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       221 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~  300 (383)
                       -...++...+..+..+-.+.+..+|.....+++.++....+..++.    -....+.+.++++-...+..+.+++..-.
T Consensus       401 -~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~----vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  401 -SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR----VLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             -chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcc----ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence             1123344455566665556778899998888888886643333222    23444555566665667887877776655


Q ss_pred             HhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142          301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      +..+...           +     ....++.+.-+.-+++..++..|...+..|....+..
T Consensus       476 ~~~~~~~-----------v-----a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE-----------V-----ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh-----------h-----hhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            5433221           1     2233577777788888999999999999888776543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=96.13  E-value=0.9  Score=40.31  Aligned_cols=163  Identities=16%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             hHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHh-cCC-hHHHHHHhhcC-----c--------hhHHHHHHH
Q 037142          188 LPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVID-AGL-IGPLVNLLQNA-----V--------FYIKKEAAW  251 (383)
Q Consensus       188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~-~~~-l~~L~~ll~~~-----~--------~~v~~~a~~  251 (383)
                      ++.+...|... ...+...+++.|..++. .+......+++ -++ .+.+..++...     .        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            78888999888 78888899999999998 66677777763 233 34555555321     1        289999999


Q ss_pred             HHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH
Q 037142          252 AISNATFGGTHEQIKYLER-EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE  330 (383)
Q Consensus       252 ~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (383)
                      .+..+...+++.....+++ .+.+..+++-+..+++++....+..+..-+-....-.+         ...-.+-+...+.
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r---------~~K~~~fn~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR---------STKCKLFNEWTLS  207 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh---------hhhhhhcCHHHHH
Confidence            9888888878887777776 67888999999998889999999999865544433221         1222344666788


Q ss_pred             HHHHHhcCCCH----HHHHHHHHHHHHhcCCCCC
Q 037142          331 KIENLQRHDNY----EIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       331 ~L~~l~~~~~~----~v~~~a~~~l~~~~~~~~~  360 (383)
                      .|..+-...++    .+.+.+...+..++.+...
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence            88888887777    8999999999999887654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.07  E-value=0.29  Score=47.87  Aligned_cols=196  Identities=20%  Similarity=0.182  Sum_probs=122.8

Q ss_pred             HHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH--HHHHhhccC-CHH
Q 037142           40 ALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP--TLAQLVHSN-DEH  116 (383)
Q Consensus        40 ~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~l~~ll~~~-~~~  116 (383)
                      +|.+++.+.++..+.+++.|+...+..+++.....++...++..+.|++...+..........+.  ....++..- +.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            77788889999999999999999999999766788999999999999998764443332222222  333333333 346


Q ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHH-HHHhh
Q 037142          117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY-LLGLL  195 (383)
Q Consensus       117 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~-l~~ll  195 (383)
                      .-..++..+..+... .++....    +.           -+.+......++......   . ........+.+ +..++
T Consensus       574 rsY~~~siLa~ll~~-~~~~~~~----~~-----------r~~~~~~l~e~i~~~~~~---~-~~~~~~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSD-SEKTTEC----VF-----------RNSVNELLVEAISRWLTS---E-IRVINDRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhC-CCcCccc----cc-----------hHHHHHHHHHHhhccCcc---c-eeehhhhhcchhHHHHh
Confidence            777777777777655 2211000    01           111222222222222111   1 11222223333 55566


Q ss_pred             ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHH
Q 037142          196 IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISN  255 (383)
Q Consensus       196 ~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~  255 (383)
                      ..+..+..+.+|+|++.+++..+++....+.+.++++.+.+.-.. ....++.++...+-+
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            555478899999999999999988888888889998888876543 255566666555543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.02  E-value=0.063  Score=44.86  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=74.7

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHH
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWT   83 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~   83 (383)
                      +|..+..+.+...++.|+.+|+. ..+.++..++.+|..+.-+++.+...+-+.+++..++.++++.+ +.+++-.++.+
T Consensus       122 Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EF  201 (257)
T PF08045_consen  122 HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEF  201 (257)
T ss_pred             CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHH
Confidence            57788999999999999999954 78999999999999999899999999999999999999996443 77888888888


Q ss_pred             HHhhcCCC
Q 037142           84 LSNLCGGK   91 (383)
Q Consensus        84 L~~l~~~~   91 (383)
                      |.-.....
T Consensus       202 L~fyl~~E  209 (257)
T PF08045_consen  202 LYFYLMPE  209 (257)
T ss_pred             HHHHHccc
Confidence            87776654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.037  Score=50.71  Aligned_cols=126  Identities=17%  Similarity=0.296  Sum_probs=93.0

Q ss_pred             CCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKL-LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~l-L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      .|++..+++. .++.+++++..|.-+|+-++.+++         ..++..+++|.++.+..++.-.+.+|+-.|....  
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--  618 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG--  618 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--
Confidence            4567777777 677899999999999999987653         4567788888777899999999999998887752  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ  158 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~  158 (383)
                          ...++..|-.+..+.+.-+|..|+-++..+..+ .++....-+. ++...+.+.+.+...
T Consensus       619 ----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-~n~~Lnp~v~-~I~k~f~~vI~~Khe  676 (926)
T COG5116         619 ----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQ-CNPELNPNVK-RIIKKFNRVIVDKHE  676 (926)
T ss_pred             ----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh-cCcccChhHH-HHHHHHHHHHhhhhH
Confidence                233677788888888889999999999888766 3333222222 356666666665443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.98  E-value=0.18  Score=49.56  Aligned_cols=192  Identities=16%  Similarity=0.101  Sum_probs=128.6

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..+-+.+..-+.+.++.-+..++..+...... .......- ..+.+..++.. +.+.|..+...++.+|..++......
T Consensus       252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~~~~~~~-~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~  329 (815)
T KOG1820|consen  252 SKITKNLETEMLSKKWKDRKEALEELVAILEE-AKKEIVKG-YTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL  329 (815)
T ss_pred             hhcChHHHHhhhccchHHHHHHHHHHHHHHhc-cccccccC-cchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence            44555566666788899999999998888876 33011111 11233333333 35578888999999999998665433


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      ...+. .+.++.++..+... ...++..+..++-.++...+       -....+.+...+.+.++.++.++...+.....
T Consensus       330 ~~~~~-~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  330 FRKYA-KNVFPSLLDRLKEK-KSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             hHHHH-HhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            32222 25678888888877 78888877777665554221       13356778888999999999997777766665


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      ..++.....-.-.++++.++....+.+.+||..|..++.-+...
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            53322222212245788899999999999999999998877764

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.92  E-value=0.81  Score=42.76  Aligned_cols=252  Identities=12%  Similarity=0.068  Sum_probs=140.6

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ  108 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~  108 (383)
                      ..++.|..++..|..+........ ...+    ..+.+.+.....++....-+.+|..|+.+.... ..+..++.|.+..
T Consensus        41 ~p~e~R~~~~~ll~~~i~~~~~~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~  114 (464)
T PF11864_consen   41 QPSEARRAALELLIACIKRQDSSS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLS  114 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHcccccc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHH
Confidence            456788888888888876442211 1111    123444444444433445556666666654222 2345666676665


Q ss_pred             hhcc---------------------------CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhh
Q 037142          109 LVHS---------------------------NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSV  160 (383)
Q Consensus       109 ll~~---------------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v  160 (383)
                      .+..                           .+.......+..+.++... +......-.-.+++..++.+. +..++..
T Consensus       115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKf-n~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKF-NFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            5531                           1234455566666666665 322222111123555655553 3355556


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ...++..+-.+.....      +-.+.++.++..|.+.. ...+...+..++.|++...-.       +..+..|..+|.
T Consensus       194 i~~~L~vldaii~y~~------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~  260 (464)
T PF11864_consen  194 IEACLSVLDAIITYGD------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILR  260 (464)
T ss_pred             HHHHHHHHHHHHHcCc------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHHHHHHc
Confidence            6777777766654221      11233455555554320 336777888899999864411       224556777773


Q ss_pred             c------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC--ChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142          240 N------AVFYIKKEAAWAISNATFGGTHEQIKYLEREG--CIKPLCDLLLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       240 ~------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~~~~~v~~~al~~l~~l~  300 (383)
                      +      .+..+-+-|+..+..+....+......+--.-  +++.+...++.+++.+-..++..+.+++
T Consensus       261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            2      24566678888888887664333333322223  7888888888888777777777777777

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.69  E-value=1.1  Score=40.34  Aligned_cols=144  Identities=13%  Similarity=0.201  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhhhc---CCCccccceec-CCChHHHHHhhcccc--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142          161 LTQALHTVGNIAR---GDYSQTLYIIN-CGALPYLLGLLIDNH--KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL  234 (383)
Q Consensus       161 ~~~a~~~L~~l~~---~~~~~~~~l~~-~~~i~~l~~ll~~~~--~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L  234 (383)
                      ....++.+..+..   +.....+.+++ ..+...|..++.+..  .+.+-..|+.++..+....|.....+.+.|+.+.+
T Consensus        77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~  156 (379)
T PF06025_consen   77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF  156 (379)
T ss_pred             HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence            4445566666655   33344555666 556667777776542  46788889999999999988888888899999999


Q ss_pred             HHHhh-c---CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH-------HHHHHHHHHHHHHHHhc
Q 037142          235 VNLLQ-N---AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP-------QIVTVCLKALENILKVG  303 (383)
Q Consensus       235 ~~ll~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-------~v~~~al~~l~~l~~~~  303 (383)
                      ++.+. .   ++.++-...-.+++.+|-+  ....+.+.+.+.++.+++++.+++.       +.-...-.++..++++.
T Consensus       157 L~~i~~~~i~~s~e~l~~lP~~l~AicLN--~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~  234 (379)
T PF06025_consen  157 LDAITAKGILPSSEVLTSLPNVLSAICLN--NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH  234 (379)
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHhHHhcC--HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence            99988 4   3566666667778888876  7889999999999999999976543       22233344566666655


Q ss_pred             hhc
Q 037142          304 EAE  306 (383)
Q Consensus       304 ~~~  306 (383)
                      +..
T Consensus       235 p~L  237 (379)
T PF06025_consen  235 PSL  237 (379)
T ss_pred             HHH
Confidence            544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.56  E-value=0.52  Score=43.41  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=116.0

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC---ChhHHHHHHHHHHhhcCCCCCCC
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE---NLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~---~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ...+.+.+.+++..-+..|..-|..++.+. .+...++...++..|.+++.+..   ..++...++.++..+..+.-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            456778888888888888999999998764 77777888888999999995332   35677777888888777653222


Q ss_pred             hhhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           96 FDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                      ......++.....+.+  ..+..+...|+..+-++..+ ++.....+.+.--++.++..++..+..+...|+..+..+..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~-s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG-SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            2333444444444443  33567788888889888887 66677778888889999999999999999998888887775


Q ss_pred             CCC
Q 037142          174 GDY  176 (383)
Q Consensus       174 ~~~  176 (383)
                      ..+
T Consensus       243 ~a~  245 (713)
T KOG2999|consen  243 KAP  245 (713)
T ss_pred             hCC
Confidence            544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.50  E-value=0.43  Score=43.67  Aligned_cols=238  Identities=12%  Similarity=0.041  Sum_probs=137.5

Q ss_pred             HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142           13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        13 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      .++...+..|+.++.++|+.-|.....+|.++-......|..+. ..+...+.+++.......-...++.+++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            44556678899999999999999999999998865556666554 33456677777545555667788888888887653


Q ss_pred             CCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           93 RPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        93 ~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                      .+- .....-....++.+.+.+. .........++...+.. ++.....     ++..++..--..++.=....+.-+..
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~  281 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEE  281 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHH
Confidence            232 2222333455556666554 34456666677666655 3332222     23444444444554444445555555


Q ss_pred             hhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc-----Cc
Q 037142          171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN-----AV  242 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~-----~~  242 (383)
                      +...-+...-.-+...+...+..++++. +..|.+.|+....|=     ... .++.   ..++|.+..-+..     =+
T Consensus       282 il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn  354 (409)
T PF01603_consen  282 ILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----YFL-SLISQNSRVILPIIFPALYRNSKNHWN  354 (409)
T ss_dssp             HHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----HHH-HHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----HHH-HHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence            5543321111111123456677778888 888888888765432     222 2222   2356677776643     16


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHH
Q 037142          243 FYIKKEAAWAISNATFGGTHEQI  265 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~  265 (383)
                      ..+|..|..++.-+... ++...
T Consensus       355 ~~Vr~~a~~vl~~l~~~-d~~lf  376 (409)
T PF01603_consen  355 QTVRNLAQNVLKILMEM-DPKLF  376 (409)
T ss_dssp             TTHHHHHHHHHHHHHTT-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CHHHH
Confidence            78999998888888765 34433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.44  E-value=0.65  Score=41.71  Aligned_cols=158  Identities=16%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             HHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhc----c-cc
Q 037142          126 SLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI----D-NH  199 (383)
Q Consensus       126 ~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~----~-~~  199 (383)
                      -+++-.   +.-..+.+..-.+.+-.-+.. +...-+.+|+..+..++...+.....+    +...+..++.    + ..
T Consensus       195 Pnl~~~---e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~  267 (370)
T PF08506_consen  195 PNLCLR---EEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSN  267 (370)
T ss_dssp             HHHS-----HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT
T ss_pred             CccCCC---HHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcc
Confidence            355543   333344444556666666654 345667889999999986543222111    1223333443    1 12


Q ss_pred             chhHHHHHHHHHHHHhcCCHH------------HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHH
Q 037142          200 KTSIKNYACWIISNITAGNRE------------QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKY  267 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  267 (383)
                      +..-+..|+..++.++.....            ....++...++|.|. --.+..+-+|..|++.+..+...-+++....
T Consensus       268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~  346 (370)
T PF08506_consen  268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ  346 (370)
T ss_dssp             -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH
Confidence            567778899999999864421            345556666777666 2224578899999999999987755544443


Q ss_pred             HHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142          268 LEREGCIKPLCDLLLCPDPQIVTVCLKAL  296 (383)
Q Consensus       268 l~~~~~i~~L~~ll~~~~~~v~~~al~~l  296 (383)
                           +++.++..|.+++.-|...|..++
T Consensus       347 -----~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  347 -----IFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -----HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             -----HHHHHHHHhCCCCcchhhhhhhhC
Confidence                 799999999999988888887664

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.42  E-value=2.2  Score=39.86  Aligned_cols=131  Identities=18%  Similarity=0.143  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHhhcCCC-CCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142           74 LSMKRIATWTLSNLCGGK-PRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV  150 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~-~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~  150 (383)
                      +.+-...+.++..+.... +..  ....+.+.+..+++...+++..+|..++..|..+...  -..+....-.|++..+.
T Consensus        61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~  138 (885)
T COG5218          61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLS  138 (885)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence            334444455555544422 222  1456688888999999999999999999999998876  33444544556888888


Q ss_pred             HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHH
Q 037142          151 KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWII  211 (383)
Q Consensus       151 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l  211 (383)
                      .-+-+-.+-|+..|+.+|+.+-....+.     +......+..+++.+++..+|..|+--+
T Consensus       139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-----en~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         139 ERLFDREKAVRREAVKVLCYYQEMELNE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            8888889999999999999886333221     1234556777777766888888876544

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.37  E-value=1.9  Score=46.71  Aligned_cols=272  Identities=9%  Similarity=0.092  Sum_probs=148.8

Q ss_pred             CCChHHHHHHHHHHHHHhcC---ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142           28 SPSDDIRMQSVWALGNIAAE---SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP  104 (383)
Q Consensus        28 ~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  104 (383)
                      +.+..+...|+..|..++..   .++....-....++.++..++.++.+.++++..+.++.++.......-......++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            45677888888888887742   222222223345677888888667788999999999999876543222223355666


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhccCCCchHH-----HHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCC---
Q 037142          105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI-----QAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGD---  175 (383)
Q Consensus       105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~---  175 (383)
                      .+.....+.++.+...+..++..+... .-..+     ..+.  .++..+..+... .+.++--.|+..|++++..-   
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d-~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIRE-YFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHh-hhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence            666566677788888888888877644 11101     1111  234445445443 34566677777777652110   


Q ss_pred             C------------------------ccccceec-----CCChHHH---HHhhccccchhHHHHHHHHHHHHhcC-----C
Q 037142          176 Y------------------------SQTLYIIN-----CGALPYL---LGLLIDNHKTSIKNYACWIISNITAG-----N  218 (383)
Q Consensus       176 ~------------------------~~~~~l~~-----~~~i~~l---~~ll~~~~~~~~~~~a~~~l~nl~~~-----~  218 (383)
                      +                        .....+.+     ...++.|   ..+..+. +.+||..|+.+|-.+...     +
T Consensus      1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076       1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence            0                        00000001     1123333   3334555 899999999988776532     2


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcC-----------------------chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCC
Q 037142          219 REQIQAVIDAGLIGPLVNLLQNA-----------------------VFYIKKEAAWAISNATFGG--THEQIKYLEREGC  273 (383)
Q Consensus       219 ~~~~~~~~~~~~l~~L~~ll~~~-----------------------~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~  273 (383)
                      ++.=..++. +++-++++.+++.                       +..+...+..+|.+++.--  --+.+..++ .++
T Consensus      1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~ 1461 (1780)
T PLN03076       1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKV 1461 (1780)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            222222333 3444455444321                       0012233333444443210  011122222 245


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      +..|..++..++..+-..+..+|.+++.....
T Consensus      1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            55666666677778888889999999876553

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.26  E-value=0.75  Score=39.31  Aligned_cols=202  Identities=10%  Similarity=0.082  Sum_probs=139.1

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----hHHHHHHHh-CcHHHHHHhcCCC-ChhhHHHHHHHHhhhhc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN----DEIQAVIEA-GVCPRLVKLLGHP-SQSVLTQALHTVGNIAR  173 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~-~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~~  173 (383)
                      .+....+++.+..-+.+.+.+++....++-+. .-    .....+... .++..++..  .. .+++.-.+-..+.....
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~-qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcir  154 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRR-QVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIR  154 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHh-hcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHh
Confidence            56788899999988999999999999888865 22    222222221 233333333  12 35666666666666554


Q ss_pred             CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCC---hHH-HHHHhhcCchhHHHHH
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL---IGP-LVNLLQNAVFYIKKEA  249 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~---l~~-L~~ll~~~~~~v~~~a  249 (383)
                      +.. ..+.+....-+......+..+ .-++...|..+...+..........++..+.   ++. --.++.++++-+|..+
T Consensus       155 he~-LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  155 HEF-LAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             hHH-HHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            433 444556666677777777777 7788888888888877665555556654332   333 5567788999999999


Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142          250 AWAISNATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       250 ~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      ..+++.+....  .....+++.+-.-+..++.+|+++...+|..|-....-++....+.
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~  291 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP  291 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence            99999987653  3344555554567889999999999999999999998887765544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.26  E-value=1.5  Score=36.67  Aligned_cols=203  Identities=17%  Similarity=0.107  Sum_probs=121.9

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      ++.|+.-+.+..+++.+...+.+|..++.+.   . .....++..+..+.+.++.+...-+...+..+-.. .+...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHH---
Confidence            3455554657778999999999999999875   1 33455777777777777777766677777777765 32221   


Q ss_pred             HHhCcHHHHHHh-----c---C--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh-ccccchhHHHHHHH
Q 037142          141 IEAGVCPRLVKL-----L---G--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL-IDNHKTSIKNYACW  209 (383)
Q Consensus       141 ~~~~~i~~l~~~-----L---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll-~~~~~~~~~~~a~~  209 (383)
                         +.++.++..     .   .  +...+.......+++.+|...++.-     ..+++.+..++ .+. ++..+..++.
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale  144 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALE  144 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHH
Confidence               123333333     1   1  1344555666678888887777521     24678888888 666 8888889999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcCCCCH
Q 037142          210 IISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDLLLCPDP  286 (383)
Q Consensus       210 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~  286 (383)
                      .+..++...   ...+  ......+..-+.. ..+.+.+..+..+..+.... +.+.... ....++..+-+...+.+.
T Consensus       145 ~l~~Lc~~~---vvd~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  145 ALAPLCEAE---VVDF--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHHh---hccH--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhcccccc
Confidence            999988321   1111  1122233333322 35555555555555444433 2333333 344577777777776654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.19  E-value=0.11  Score=48.92  Aligned_cols=131  Identities=12%  Similarity=0.105  Sum_probs=96.3

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC  278 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~  278 (383)
                      ++.++..|.-+|..+..-+.+...     .-+|.++..|. +++|.+|..|+..++.++..-+ ..+..     .-..|.
T Consensus       909 d~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN-~~~de-----~t~yLy  977 (1128)
T COG5098         909 DEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN-TTADE-----HTHYLY  977 (1128)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh-hhhHH-----HHHHHH
Confidence            788999999888888765544442     34788999997 7999999999999998875421 22222     356777


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      +-+.+.+..|+..|+..+..++-.+.                  +.--|-...+..++..++.+|.+.|--.+..+...+
T Consensus       978 rrL~De~~~V~rtclmti~fLilagq------------------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILAGQ------------------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHccc------------------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            88888999999999999999886554                  333444566777788888888887776666665555


Q ss_pred             C
Q 037142          359 V  359 (383)
Q Consensus       359 ~  359 (383)
                      +
T Consensus      1040 N 1040 (1128)
T COG5098        1040 N 1040 (1128)
T ss_pred             c
Confidence            4

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.12  E-value=0.097  Score=34.37  Aligned_cols=57  Identities=18%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           34 RMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        34 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      ...|+|+++++++. +.....+.+.++++.++++..+++...+|-.|.++|+-++...
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            56799999999974 3555566667999999999988888999999999999998764

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.06  E-value=1.2  Score=42.50  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142          144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ  223 (383)
Q Consensus       144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~  223 (383)
                      .++|.|...+++.+..++..++..+..+...-+   -.+++.-+++.+..+.....+..++..++-+++.++.    ..+
T Consensus       389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD  461 (700)
T KOG2137|consen  389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLD  461 (700)
T ss_pred             HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHH
Confidence            488899999999999999999999999886544   2245566788887765444488999999999998872    222


Q ss_pred             HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142          224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD  285 (383)
Q Consensus       224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  285 (383)
                      ...-...+..+.......++.+......+..++..... .. ..+....++|.++-+...+.
T Consensus       462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence            21112234445555556788888888888777766532 11 33344567888777776554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.98  E-value=2.4  Score=37.57  Aligned_cols=157  Identities=15%  Similarity=0.096  Sum_probs=109.2

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHhhhhc-CCCccccceecC-C-ChHHHHHhhcccc----c--------hhHHHHHHHH
Q 037142          146 CPRLVKLLGHPSQSVLTQALHTVGNIAR-GDYSQTLYIINC-G-ALPYLLGLLIDNH----K--------TSIKNYACWI  210 (383)
Q Consensus       146 i~~l~~~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~-~i~~l~~ll~~~~----~--------~~~~~~a~~~  210 (383)
                      ++.+...|....+.+...+++.|..++. ........+.+. + -.+.+..++....    +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788888888888888999999999997 444444444332 2 1334444543210    1        2788887766


Q ss_pred             HHH-HhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCChHHHHhhcCCCC
Q 037142          211 ISN-ITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISN-ATFGG--THEQIKYLEREGCIKPLCDLLLCPD  285 (383)
Q Consensus       211 l~n-l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~  285 (383)
                      +.. +..+++..+..++ +.+.+..+..-|...++++......++.. +....  +......+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            544 5557777887877 56667888888888888888888888875 43332  3455556666778889999888777


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 037142          286 P----QIVTVCLKALENILKV  302 (383)
Q Consensus       286 ~----~v~~~al~~l~~l~~~  302 (383)
                      +    .+...+-..|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    7888888888888754

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.88  E-value=2.7  Score=37.89  Aligned_cols=212  Identities=16%  Similarity=0.196  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-----CChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALP  189 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  189 (383)
                      ..++..++..+...+.. ..+....+... ++..+.++|..     ..+.+...++..|..++.... ....+...+.++
T Consensus       110 ~kvK~~i~~~~~ly~~k-Y~e~f~~~l~~-fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~-~~~lf~~~~~L~  186 (370)
T PF08506_consen  110 EKVKAWICENLNLYAEK-YEEEFEPFLPT-FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPH-HKNLFENKPHLQ  186 (370)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH-HHTTT-SHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh-HHHHhCCHHHHH
Confidence            34555666666665554 34444444332 55666666644     235666778888877664322 221122222222


Q ss_pred             HH-----HHhhc----------------------cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---
Q 037142          190 YL-----LGLLI----------------------DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ---  239 (383)
Q Consensus       190 ~l-----~~ll~----------------------~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---  239 (383)
                      .+     ++.+.                      ..+...-|.+|+..+..++...++....++    ...+..++.   
T Consensus       187 ~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~  262 (370)
T PF08506_consen  187 QIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYA  262 (370)
T ss_dssp             HHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHh
Confidence            22     22221                      111345677888888888854333332222    223333333   


Q ss_pred             ---cCchhHHHHHHHHHHHhcCCCCH------H-----HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          240 ---NAVFYIKKEAAWAISNATFGGTH------E-----QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       240 ---~~~~~v~~~a~~~l~~l~~~~~~------~-----~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                         +.+.+-|..|...++.++..+..      .     +...+....++|-|. --.+..|-++..|++.+..+-..-++
T Consensus       263 ~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~  341 (370)
T PF08506_consen  263 SNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK  341 (370)
T ss_dssp             H-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H
T ss_pred             hCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH
Confidence               24677888899999999876521      0     345556666777776 22345677788888888777654332


Q ss_pred             cccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 037142          306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL  351 (383)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l  351 (383)
                      .+                 -.+.++.+.+.+.+++.-|+..|..++
T Consensus       342 ~~-----------------l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  342 EQ-----------------LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HH-----------------HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HH-----------------HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            21                 223568889999999999988887543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.82  E-value=2.2  Score=36.31  Aligned_cols=221  Identities=14%  Similarity=0.078  Sum_probs=133.0

Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142           64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI  141 (383)
Q Consensus        64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  141 (383)
                      |=..| .+++..+|..++.+|+.+...-+..  ......-++.....-+  .|......++.++..+... ..-.... .
T Consensus         4 Lg~~L-tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~-~~~~~~~-~   78 (262)
T PF14500_consen    4 LGEYL-TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKM-KNFSPES-A   78 (262)
T ss_pred             hhhhh-CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhC-cCCChhh-H
Confidence            44556 5778999999999999888765422  1222233333334433  3555555557777766644 2211111 1


Q ss_pred             HhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142          142 EAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR  219 (383)
Q Consensus       142 ~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~  219 (383)
                       ..++..+.+...  .--...|..+...+..+..+...... -...+++..++..+....||+-...+...+..+...-+
T Consensus        79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence             113444444332  23456788888888888866443222 22346788888888877788888888887777765432


Q ss_pred             HHHHHHHhcCChHHHHHHhhc-------C---ch--hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 037142          220 EQIQAVIDAGLIGPLVNLLQN-------A---VF--YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQ  287 (383)
Q Consensus       220 ~~~~~~~~~~~l~~L~~ll~~-------~---~~--~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  287 (383)
                            + ....+.+.+.+..       +   ++  -.+..-..+|.++... ++.....     .+|.|++-|.++.+.
T Consensus       157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~-----~~p~LleKL~s~~~~  223 (262)
T PF14500_consen  157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPF-----AFPLLLEKLDSTSPS  223 (262)
T ss_pred             ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHH-----HHHHHHHHHcCCCcH
Confidence                  1 3344445554431       1   21  2334444555555443 3455444     799999999999999


Q ss_pred             HHHHHHHHHHHHHHhch
Q 037142          288 IVTVCLKALENILKVGE  304 (383)
Q Consensus       288 v~~~al~~l~~l~~~~~  304 (383)
                      ++..++..|...+...+
T Consensus       224 ~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  224 VKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            99999999988887543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.82  E-value=0.28  Score=38.27  Aligned_cols=145  Identities=12%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ..++.|+++|+. .++.+|.+++++||.+..-+|...+.+...  .+   ..-....+.........   + ....+..+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~---~-~~~~~~~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP---M-MGISPSSE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh---h-ccCCCchH
Confidence            356788888886 579999999999999987666544432211  11   00000111111111111   1 11112233


Q ss_pred             hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           96 FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      ......++..|.+.++++. ..-...++.++.++... ....+...... ++|.++..++..++..++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~-l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS-LGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-cCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3444667778888888665 33334456666655543 22233333333 7899999999877788888877777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=1.7  Score=44.79  Aligned_cols=102  Identities=6%  Similarity=0.050  Sum_probs=58.6

Q ss_pred             CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcH
Q 037142           70 NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVC  146 (383)
Q Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i  146 (383)
                      ..+..+++...+.++.++..............+++.+-......   ...+.+.+..++.-++.. .-+....-+-.+++
T Consensus       852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssD-fLqSLp~sci~~li  930 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSD-FLQSLPTSCILDLI  930 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhc-chhcCChHHHHHHH
Confidence            34456677777778888776542222222345555555544433   456777777777777755 22222222222456


Q ss_pred             HHHHHhcCC-CChhhHHHHHHHHhhhh
Q 037142          147 PRLVKLLGH-PSQSVLTQALHTVGNIA  172 (383)
Q Consensus       147 ~~l~~~L~~-~~~~v~~~a~~~L~~l~  172 (383)
                      ..+..+-+. .|-++--.|+..+++++
T Consensus       931 dtl~~fs~QktdlNISltAi~lfWtvs  957 (1610)
T KOG1848|consen  931 DTLLVFSRQKTDLNISLTAIGLFWTVS  957 (1610)
T ss_pred             HHHHHHHhhhccccccHHHHHHHHHHH
Confidence            666666544 66677777888787776

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.76  E-value=0.92  Score=41.53  Aligned_cols=233  Identities=13%  Similarity=0.036  Sum_probs=132.3

Q ss_pred             hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCch
Q 037142           57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKND  135 (383)
Q Consensus        57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~  135 (383)
                      +...+..|+.++ +++|+.-|...-.+|.++....+.........+...+.+.+... ...-...++..++.+..+...+
T Consensus       131 ~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p  209 (409)
T PF01603_consen  131 DQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP  209 (409)
T ss_dssp             -HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred             CHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence            344567788888 78899889998888888877655555555566777777777633 4555666777777777662222


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHH
Q 037142          136 EIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI  214 (383)
Q Consensus       136 ~~~~~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl  214 (383)
                      ..+.... -+...++.+.+.+.- ........++..++..++....     .++..++..--.. ++.-...-+.-+..+
T Consensus       210 lk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~-----~~i~~llk~WP~t-~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  210 LKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE-----PVIKGLLKHWPKT-NSQKEVLFLNELEEI  282 (409)
T ss_dssp             --HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH-----HHHHHHHHHS-SS--HHHHHHHHHHHHHH
T ss_pred             CcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHHhCCCC-CchhHHHHHHHHHHH
Confidence            2222111 133455666666443 3345566677777766664332     2334444444333 343344455556666


Q ss_pred             hcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhc----C-CCC
Q 037142          215 TAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLL----L-CPD  285 (383)
Q Consensus       215 ~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll----~-~~~  285 (383)
                      ...- +..... +...++..+..++.+.+.+|.+.|+....|       +....++..   .++|.++..+    + +-+
T Consensus       283 l~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n-------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn  354 (409)
T PF01603_consen  283 LEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNN-------EYFLSLISQNSRVILPIIFPALYRNSKNHWN  354 (409)
T ss_dssp             HTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred             HHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence            5533 232222 234467788888999999999988766532       222222322   2455555443    3 236


Q ss_pred             HHHHHHHHHHHHHHHHhchh
Q 037142          286 PQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       286 ~~v~~~al~~l~~l~~~~~~  305 (383)
                      ..++..+..++..+...+..
T Consensus       355 ~~Vr~~a~~vl~~l~~~d~~  374 (409)
T PF01603_consen  355 QTVRNLAQNVLKILMEMDPK  374 (409)
T ss_dssp             TTHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHHHhCHH
Confidence            68898899998888775543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.68  E-value=0.78  Score=43.75  Aligned_cols=139  Identities=14%  Similarity=0.092  Sum_probs=97.0

Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      ..+...++|.|..-+++.+..++..++..+..+++. -+  ...+ ..-++|.+..+. ++.+..++..++-|++.++..
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~v-k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~  459 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFV-KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR  459 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHH-HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence            345578899999999999999999999999998876 22  2333 334778877763 457889999999999999832


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      -+.    ..-...+..+....... ++.+....+++..++....... ..++-++++|.++.+...+...
T Consensus       460 lD~----~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~  523 (700)
T KOG2137|consen  460 LDK----AAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLN  523 (700)
T ss_pred             HHH----HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccccc
Confidence            221    11112344555555666 8889998888888887644332 4455677899998888765433

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.68  E-value=0.05  Score=43.81  Aligned_cols=82  Identities=13%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCC---------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhH
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLAS---------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM   76 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~---------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~   76 (383)
                      +......|++.|++..|++.|..         .+.+++..++.||..+..........+-..+.+..++..| .+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence            45678899999999999998853         3457889999999999876544444444568899999999 6889999


Q ss_pred             HHHHHHHHHhhc
Q 037142           77 KRIATWTLSNLC   88 (383)
Q Consensus        77 ~~~a~~~L~~l~   88 (383)
                      +..++.+|+.+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.64  E-value=0.37  Score=38.24  Aligned_cols=111  Identities=18%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC-------------------cHHHHHHhcCC-CChhhHH
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG-------------------VCPRLVKLLGH-PSQSVLT  162 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-------------------~i~~l~~~L~~-~~~~v~~  162 (383)
                      .+.+.-++.++++.+|..++.++..+.++ .........+..                   +-..|+..|.. .+..+..
T Consensus        42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~  120 (182)
T PF13251_consen   42 PSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT  120 (182)
T ss_pred             cchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            34455566688999999999999999987 443333322111                   12234444554 5788999


Q ss_pred             HHHHHHhhhhcCCCccccceecCCChHH----HHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142          163 QALHTVGNIARGDYSQTLYIINCGALPY----LLGLLIDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~----l~~ll~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      ..++++..++...+...   ++.|+++.    +..++.+. |.+++..++.+++.+....
T Consensus       121 q~lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  121 QLLKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence            99999999998877432   23455544    45566777 9999999999999887643

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.62  E-value=2.3  Score=35.59  Aligned_cols=202  Identities=15%  Similarity=0.202  Sum_probs=114.9

Q ss_pred             hHHHHH-hhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           19 VPIFVK-LLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        19 i~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      ++.|+. .-+..+++.+...+.+|..++..+.....     -++..+..+. +.+.......+...+..+-...+. .+ 
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r-~f-   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLV-EQGSLELRYVALRLLTLLWKANDR-HF-   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCch-HH-
Confidence            344554 44458999999999999999976511111     1234455555 455555556677777777665421 11 


Q ss_pred             hhhchhHHHHHh--------hc--cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHH
Q 037142           98 QVRPCLPTLAQL--------VH--SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALH  166 (383)
Q Consensus        98 ~~~~~i~~l~~l--------l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~  166 (383)
                         +.+..++..        ..  +...+.......++..+|.. .++     ....+++.+..+| ++.++.++..++.
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p~-----~g~~ll~~ls~~L~~~~~~~~~alale  144 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-RPD-----HGVDLLPLLSGCLNQSCDEVAQALALE  144 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-Chh-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence               333333333        01  22355556666788889987 333     1223678888888 7888889999999


Q ss_pred             HHhhhhcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHHHHHhcCChHHHHHHhhcCch
Q 037142          167 TVGNIARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       167 ~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                      +|..++...      +++. ..-..+.+-++.+..+.+....+..+..+..+.- ..........++..+.++..+.+.
T Consensus       145 ~l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  145 ALAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            999998322      2221 2234455555555456666655555554443221 111122344556666666655443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.59  E-value=0.34  Score=38.91  Aligned_cols=126  Identities=15%  Similarity=0.086  Sum_probs=80.9

Q ss_pred             hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc----------------CChHHHHHHhcC-----CCChhHHHHHHHHH
Q 037142           26 LASPSDDIRMQSVWALGNIAAESPRFRDLVLGE----------------AALIPLLTQLNN-----HENLSMKRIATWTL   84 (383)
Q Consensus        26 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~----------------g~i~~L~~~L~~-----~~~~~~~~~a~~~L   84 (383)
                      +.++.......++..|.|++..+...+ .+++.                ..+..|+.++.+     .....-....+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            334555677888899999998654433 22222                245666776644     12344566788999


Q ss_pred             HhhcCCCCCCChhhh--hch--hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH---hCcHHHHHHhcC
Q 037142           85 SNLCGGKPRPIFDQV--RPC--LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE---AGVCPRLVKLLG  154 (383)
Q Consensus        85 ~~l~~~~~~~~~~~~--~~~--i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~i~~l~~~L~  154 (383)
                      .|++.....+.....  .+.  +..|+.+.++.+..-|.-++.+|.|+|-.  .+....+..   -+++|.++.-|.
T Consensus        83 ~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   83 ANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhcc
Confidence            999998765554443  233  77788888888888888899999999976  344444433   245555544443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.59  E-value=0.36  Score=37.60  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142          186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI  222 (383)
Q Consensus       186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~  222 (383)
                      .+++.|+.+++++.+..+|.++++++|.+.+-+|...
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~   46 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH   46 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH
Confidence            4577888888887679999999999999987665433

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.56  E-value=0.29  Score=39.30  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             CCChhhHHHHHHHHhhhhcCCCcccc---------------ceecCCChHHHHHhhcc-----ccchhHHHHHHHHHHHH
Q 037142          155 HPSQSVLTQALHTVGNIARGDYSQTL---------------YIINCGALPYLLGLLID-----NHKTSIKNYACWIISNI  214 (383)
Q Consensus       155 ~~~~~v~~~a~~~L~~l~~~~~~~~~---------------~l~~~~~i~~l~~ll~~-----~~~~~~~~~a~~~l~nl  214 (383)
                      +++......++..|.|++........               ...+...+..|+..+..     .....-......++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            33444555566667777654432211               01122356777777765     11344566788899999


Q ss_pred             hcCCHHHHHHHHh--cCC--hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---cCChHHHHhhc
Q 037142          215 TAGNREQIQAVID--AGL--IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER---EGCIKPLCDLL  281 (383)
Q Consensus       215 ~~~~~~~~~~~~~--~~~--l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~---~~~i~~L~~ll  281 (383)
                      +... +.++.+++  .+.  +..|.....+.+..-|.-++.+|-|+|-.  .+....++.   -++++.|+--+
T Consensus        86 S~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   86 SQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             cCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhc
Confidence            7764 88888884  344  77888888888777788889999999987  344455554   24445444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.20  E-value=0.35  Score=36.89  Aligned_cols=75  Identities=7%  Similarity=-0.017  Sum_probs=64.1

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhch
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~  304 (383)
                      .+..|..-+.+.++.+...|...|-.++.+++......+.+.+++..|..++.. .++.|+..++..+........
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            345566677788999999999999999999988888888889999999999987 688999999998888776544

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.07  E-value=2.6  Score=45.75  Aligned_cols=201  Identities=13%  Similarity=0.115  Sum_probs=114.4

Q ss_pred             CCChhHHHHHHHHHHhhcCCCCC----CChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCc
Q 037142           71 HENLSMKRIATWTLSNLCGGKPR----PIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV  145 (383)
Q Consensus        71 ~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  145 (383)
                      +++..+...|+..|..++...-.    ....+...++..+..++. +.+.++++.++.|+.++... ...++    .+ +
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s-~~~nI----kS-G 1221 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS-RVNNV----KS-G 1221 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHhhh----hc-C
Confidence            34667777888888787764411    223444677888887776 55689999999999998865 22222    23 4


Q ss_pred             HHHHHHhcC----CCChhhHHHHHHHHhhhhcCCCccccceec--C----CChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          146 CPRLVKLLG----HPSQSVLTQALHTVGNIARGDYSQTLYIIN--C----GALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       146 i~~l~~~L~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~----~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      .+.++..+.    ++++.+...+..++..++...-.   .+..  .    ..+..+..+.....+.++-..|+..|.+++
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence            677777765    46788888899888877643211   1111  1    234444444444424555566666666552


Q ss_pred             c----CCH-----------------------HHHHHHH-----hcCChHHHHH---HhhcCchhHHHHHHHHHHHhcCCC
Q 037142          216 A----GNR-----------------------EQIQAVI-----DAGLIGPLVN---LLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       216 ~----~~~-----------------------~~~~~~~-----~~~~l~~L~~---ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                      .    +.-                       .....+.     ....+|.|..   +..+...+||..|+.+|..+....
T Consensus      1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076       1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence            1    000                       0000000     0123343333   344678999999999987776432


Q ss_pred             ----CHHHHHHHHHcCChHHHHhhc
Q 037142          261 ----THEQIKYLEREGCIKPLCDLL  281 (383)
Q Consensus       261 ----~~~~~~~l~~~~~i~~L~~ll  281 (383)
                          +++.-..++. +++.++++.+
T Consensus      1379 G~~Fs~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076       1379 GHLFSLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred             hccCCHHHHHHHHH-HHHHHHHHHH
Confidence                2222223222 4566666554

>PRK14707 hypothetical protein; Provisional

Probab=93.92  E-value=12  Score=41.04  Aligned_cols=314  Identities=17%  Similarity=0.101  Sum_probs=174.5

Q ss_pred             hHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH-HhhcCCCCCCCh
Q 037142           19 VPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL-SNLCGGKPRPIF   96 (383)
Q Consensus        19 i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L-~~l~~~~~~~~~   96 (383)
                      |..++.-++. ++.--..+|+..|.....+++..+..+-..| +-..+..|.+.++...-.+++..+ ..++.+. ....
T Consensus       207 ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~  284 (2710)
T PRK14707        207 VATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDP-GLRK  284 (2710)
T ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHH
Confidence            3444444443 4444455566666554444455555553334 555666666677665555555544 4555443 2222


Q ss_pred             hhh-hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcC
Q 037142           97 DQV-RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        97 ~~~-~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~  174 (383)
                      .+- .++-..+-.+-+-.+..+-..+...|..=..+ +.+..+.+-.. .+...+.-|+. +|..+...+...|..=...
T Consensus       285 al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~  362 (2710)
T PRK14707        285 ALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVA  362 (2710)
T ss_pred             hcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence            222 33444444444566666666666665543333 24433333222 34455555555 6766777777776655555


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAI  253 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l  253 (383)
                      ++...+.+--.|+-..|..+-+=+ +...-..+...|..=..++++....+ +...+..+++-+. =++..+...++..|
T Consensus       363 d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        363 DPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             CHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            554444333334334444443444 55555555555544444555655554 3334444455454 47888888888888


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHH
Q 037142          254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE  333 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~  333 (383)
                      .--... +.+..+.+--.++...|--+-+.+|..+...+...|..=+....             .+++-|.-.+....|.
T Consensus       441 A~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~-------------~l~~a~~~q~~~~~L~  506 (2710)
T PRK14707        441 AGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHER-------------RLRKALKPQEVVIALH  506 (2710)
T ss_pred             HHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccH-------------HHHhhcCHHHHHHHHH
Confidence            776665 35555554445566666666678888888777777655544322             2445565666677888


Q ss_pred             HHhcCCCHHHHHHHHHHHH
Q 037142          334 NLQRHDNYEIHEKSAKILE  352 (383)
Q Consensus       334 ~l~~~~~~~v~~~a~~~l~  352 (383)
                      .|...++......|...|.
T Consensus       507 aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        507 SLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             HhhcCCCcHHHHHHHHHHH
Confidence            8888888876666665553

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=1.1  Score=42.66  Aligned_cols=184  Identities=14%  Similarity=0.120  Sum_probs=111.7

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhc-CCh----HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CC
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAA-ESP----RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PR   93 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~   93 (383)
                      |.+.+-|+..+.++|..|+..+.++-- .+|    +-.+.+++.. ...+.++| +++-+.++..|+.-+..+.... ..
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence            334455666899999999999998751 222    4456666555 57788899 7888889998887777666432 11


Q ss_pred             CChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           94 PIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      .........+..+..-+. +...++|..+..+|..+..+   +..-.+.+. ++|++-..|.+...+|+.++...|..+=
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            111222223333332222 45578999999999999976   333334443 5678888888889999999888887664


Q ss_pred             cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142          173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN  213 (383)
Q Consensus       173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n  213 (383)
                      ....   ..+.+---.+.++..|..+ +..+-+..+..+-+
T Consensus       331 ~vra---~~f~~I~~~d~~l~~L~~d-~~~v~rr~~~li~~  367 (1005)
T KOG1949|consen  331 AVRA---AKFWKICPMDHILVRLETD-SRPVSRRLVSLIFN  367 (1005)
T ss_pred             hhhh---hhhhccccHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence            2221   1122222344555555554 44444333333333

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.65  E-value=0.46  Score=35.91  Aligned_cols=75  Identities=9%  Similarity=-0.059  Sum_probs=61.9

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~  303 (383)
                      .+..+..-+.++++.+...|..+|-.+..+++......+.+.+++.-|++++..      .++.|+..++..+..-....
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            355667777889999999999999999999888888888888999999999963      46789999988887776544


Q ss_pred             h
Q 037142          304 E  304 (383)
Q Consensus       304 ~  304 (383)
                      .
T Consensus       119 ~  119 (139)
T cd03567         119 P  119 (139)
T ss_pred             c
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.62  E-value=0.52  Score=35.92  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l  351 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+....+++.|..+... .+..|++++..++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4666777777899999999999999999877643            66667788899999999887 7889999999999


Q ss_pred             HHhcCCCCCCC
Q 037142          352 ETYWCGRVVGP  362 (383)
Q Consensus       352 ~~~~~~~~~~~  362 (383)
                      ..+......+|
T Consensus       106 ~~W~~~f~~~~  116 (144)
T cd03568         106 KQWADEFKNDP  116 (144)
T ss_pred             HHHHHHhCCCc
Confidence            98876655444

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.48  E-value=0.95  Score=36.70  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 037142          204 KNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC  278 (383)
Q Consensus       204 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~  278 (383)
                      ...++..+..++++ |+.+..+++..+--.+...+..     +..-+|..+..+|+.+..++++..+..+....++|.++
T Consensus       117 vcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            34566666666655 4777777777765455555542     24568889999999999999989999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHH-----HHHhcCCCHHHHHHHHHH
Q 037142          279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKI-----ENLQRHDNYEIHEKSAKI  350 (383)
Q Consensus       279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L-----~~l~~~~~~~v~~~a~~~  350 (383)
                      +.++.++.--+-.++..+..++..+..          .+.+++-++.-..+..+     .++...+...+.+.+..+
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvG----------LqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRc  262 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVG----------LQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRC  262 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            999988877777788888888765543          34556655554433322     234445555554444433

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.43  E-value=0.67  Score=32.18  Aligned_cols=68  Identities=22%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      ...+..+ .++.+.+|..++..|.++..... ........++..+...++++|+-+--+|+.++..++..
T Consensus         6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            4456667 67788899999999999998764 34445578999999999999999999999999999976

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=0.64  Score=39.63  Aligned_cols=145  Identities=16%  Similarity=0.139  Sum_probs=102.8

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      ...+.-.+..+.+.+++.....+..+..|+.. -.+....... .++-.+++-++.....|-..|+.++..+.....+..
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~f-h~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i  164 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEF-HPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI  164 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhh-hHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677788899999999999999999987 3333333333 366788888888888999999999998876544333


Q ss_pred             cceecCCChHHHHHhhc----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          180 LYIINCGALPYLLGLLI----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      ..     -++.++..|.    .+ +..++..|-.+|..++..-..       ..+++.|...+++.++.++..++....+
T Consensus       165 ~~-----~ld~lv~~Ll~ka~~d-nrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  165 DQ-----ELDDLVTQLLHKASQD-NRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             HH-----HHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence            32     2333443332    23 567888898988888754311       2357788888999999999998888777


Q ss_pred             hcCC
Q 037142          256 ATFG  259 (383)
Q Consensus       256 l~~~  259 (383)
                      +...
T Consensus       232 ~v~r  235 (334)
T KOG2933|consen  232 CVIR  235 (334)
T ss_pred             ccee
Confidence            6544

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.22  E-value=0.67  Score=35.26  Aligned_cols=75  Identities=9%  Similarity=0.003  Sum_probs=62.7

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++..|..-+.++++.++..|...|-.+..+++......+.+.+++..|..++. ..++.|+..++..+..-.....
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            45566677788899999999999999999988888888888999999999987 4577899999998888776544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.16  E-value=0.58  Score=39.89  Aligned_cols=145  Identities=14%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      +...+..| ++.+.+....++..+..|+...+..-......++..+++-+++....+-+.+|.++..+... -+..+...
T Consensus        90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~-ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS-LNNSIDQE  167 (334)
T ss_pred             HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            34455666 67788888888888888888765443344466777777778888899999999999999876 33333332


Q ss_pred             HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      .+ +.+-.|..--..++.=++..+-.+|..++.+....       .+++.|...+.+. ++.++..++.++.+...
T Consensus       168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence            22 12222222223356678899999999888654322       3577888888888 89999988887777653

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.09  E-value=0.76  Score=34.98  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l  351 (383)
                      .+..|..-+.++++.++..|+..|..++..++.            .+...+.+.++++.|..+.. ..+..|++++..++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li  109 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT------------HFHDEVASREFMDELKDLIKTTKNEEVRQKILELI  109 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            566777777889999999999999999987653            36666778888999998876 67788999999999


Q ss_pred             HHhcCCCCCC
Q 037142          352 ETYWCGRVVG  361 (383)
Q Consensus       352 ~~~~~~~~~~  361 (383)
                      ..+...-..+
T Consensus       110 ~~W~~~f~~~  119 (142)
T cd03569         110 QAWALAFRNK  119 (142)
T ss_pred             HHHHHHhCCC
Confidence            8887665444

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PRK14707 hypothetical protein; Provisional

Probab=93.07  E-value=16  Score=40.07  Aligned_cols=310  Identities=13%  Similarity=0.062  Sum_probs=167.8

Q ss_pred             HHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh-hh
Q 037142           23 VKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ-VR  100 (383)
Q Consensus        23 ~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~  100 (383)
                      +.-|+. ++..+...|+..|..-..++++.++.+-..| +...+.-+.+.++...-+.+...|..=..+++.....+ -.
T Consensus       337 LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q  415 (2710)
T PRK14707        337 LNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ  415 (2710)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh
Confidence            334443 7777788888777766666778887775444 66677777678877777777776654444443333333 35


Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccc
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      ++-..|-.+-+-++..+...+...|..-.-+ +.+..+.+-..+ +...+.-++. +|..+-..+...|..=..+.....
T Consensus       416 ~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~  493 (2710)
T PRK14707        416 GVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLR  493 (2710)
T ss_pred             hHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHH
Confidence            5556666666677878888888877755544 345554443333 3444455555 777777666666655444444433


Q ss_pred             cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      +.+--.++...|..+-+.++.......+.++-+.+.... .....+-..++...+-.+.+.++......++..|......
T Consensus       494 ~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~  572 (2710)
T PRK14707        494 KALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLAD  572 (2710)
T ss_pred             hhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhc
Confidence            322222344444444445534445555666666665322 2222211222222233334456777778888788776554


Q ss_pred             CCHHHHHHHHHcCChHHHHhhc-CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          260 GTHEQIKYLEREGCIKPLCDLL-LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       260 ~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                       .+..... +...-+..+++.| +.++......++..|...+......             +.-+..-+.-..+..+..-
T Consensus       573 -~~~~~~~-L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~l-------------r~~l~~q~lan~lNALSKW  637 (2710)
T PRK14707        573 -EPQLPKD-LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDL-------------RKELDPVDVTNVLNALSKW  637 (2710)
T ss_pred             -chhhHHh-hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhh-------------hhhccHHHHHHHHhhhhcC
Confidence             2333333 3444556666655 4566555555555555444433222             1113233333444555555


Q ss_pred             CCHHHHHHHHHHH
Q 037142          339 DNYEIHEKSAKIL  351 (383)
Q Consensus       339 ~~~~v~~~a~~~l  351 (383)
                      ++.+..+.+..-|
T Consensus       638 P~s~~C~~Aa~rL  650 (2710)
T PRK14707        638 PGTEVCAEVARLL  650 (2710)
T ss_pred             CCchHHHHHHHHH
Confidence            5555544444443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.00  E-value=0.56  Score=32.56  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=57.4

Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH
Q 037142          146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE  220 (383)
Q Consensus       146 i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~  220 (383)
                      ++..+..+.++.+.++..++..|+.+.....  ....-..+++..+...++++ ++-+--+|+..+..++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence            4667778889999999999999999997766  11122236778888889998 999999999999999876544

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.97  E-value=1.1  Score=36.91  Aligned_cols=127  Identities=16%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhccCCCchHH-HHHHHhCcHHHHHHhcCC-----C----------ChhhHHHHHHHHhhhhcCCCcc
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEI-QAVIEAGVCPRLVKLLGH-----P----------SQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~i~~l~~~L~~-----~----------~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..+|++++-++.|++.+.+-... +.+.- -++..+++..-.     .          .-+-+..++.+|+.++-.+. +
T Consensus        80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~-N  157 (257)
T PF12031_consen   80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN-N  157 (257)
T ss_pred             HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc-C
Confidence            36677778888887754211111 11111 133334443321     1          12457889999999986544 4


Q ss_pred             ccceecCC-------ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCch
Q 037142          179 TLYIINCG-------ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       179 ~~~l~~~~-------~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~  243 (383)
                      .+.++.++       ++..|..++....++..|+-|+..|.+++.++......+. +.+.+..|+..+.....
T Consensus       158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            55566654       3445666666665888999999999999999877765554 78889999999876543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.85  E-value=0.65  Score=45.31  Aligned_cols=167  Identities=16%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             chhHHHHHhhccCCHH--HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHHhhhhcC
Q 037142          101 PCLPTLAQLVHSNDEH--VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~~  174 (383)
                      ..+..+.+++.+....  -...++..+......   +...      .+..+..+++.    +++.+...|+-+++.+...
T Consensus       395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~---Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~  465 (618)
T PF01347_consen  395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRR---PTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHK  465 (618)
T ss_dssp             HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCC---CCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence            3566677777765422  222333333333322   2211      35566666654    4567888888787777632


Q ss_pred             CCcc---------ccceecCCChHHHHHhhc----cccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142          175 DYSQ---------TLYIINCGALPYLLGLLI----DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA  241 (383)
Q Consensus       175 ~~~~---------~~~l~~~~~i~~l~~ll~----~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  241 (383)
                      .-..         ........+++.+...+.    .. +..-+..++++|+|+...           ..++.+..++...
T Consensus       466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~  533 (618)
T PF01347_consen  466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGK  533 (618)
T ss_dssp             HHTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTS
T ss_pred             eeecccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhc
Confidence            1111         111222345666666665    33 567888899999999532           2566666666654


Q ss_pred             ---chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHH
Q 037142          242 ---VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKALE  297 (383)
Q Consensus       242 ---~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l~  297 (383)
                         +..+|..|++++..++... ++.        +.+.|+.++.+  .++++|..|...|.
T Consensus       534 ~~~~~~~R~~Ai~Alr~~~~~~-~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm  585 (618)
T PF01347_consen  534 EEVPHFIRVAAIQALRRLAKHC-PEK--------VREILLPIFMNTTEDPEVRIAAYLILM  585 (618)
T ss_dssp             S-S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhhcC-cHH--------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence               7889999999999887653 222        34455555543  46788887765543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.75  E-value=7.4  Score=35.24  Aligned_cols=267  Identities=12%  Similarity=0.018  Sum_probs=133.6

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHHhcC---ChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHH
Q 037142           30 SDDIRMQSVWALGNIAAESPRFRDLVLGEA---ALIPLLTQLN-NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPT  105 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  105 (383)
                      +..+..+|+++|+.+.... +....+-+.-   ++...+..+. .+.+..+....+|+|..=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6788999999999988643 4433332221   2344455552 233566777777777652222111122222333444


Q ss_pred             HHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc------
Q 037142          106 LAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ------  178 (383)
Q Consensus       106 l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~------  178 (383)
                      +..+-+ -++..+....+.++.++..+ .+.....-.. .-++.++..+-+....++..|...+..+...-+..      
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q-~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQ-FPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            444433 45678888899999999977 3322111111 25677777777777777777666555443221110      


Q ss_pred             ----ccceecCC-----ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142          179 ----TLYIINCG-----ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEA  249 (383)
Q Consensus       179 ----~~~l~~~~-----~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  249 (383)
                          .+.....+     +.+.+..++.+. +......-+|..--+..+++....--.-...+...-.+++++++.+|..|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHH
Confidence                11111122     233456666663 22222222222222222222111111113345555556678899999988


Q ss_pred             HHHHHHhc--CCCCHHHHHHHHHcCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHH
Q 037142          250 AWAISNAT--FGGTHEQIKYLEREGCIKPLCDLLLCP-DP----QIVTVCLKALENILK  301 (383)
Q Consensus       250 ~~~l~~l~--~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~----~v~~~al~~l~~l~~  301 (383)
                      ..+=..+.  ...+.......++- +..++...++.+ ..    ++...++..+++++-
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            55433332  22222222222221 344555555533 33    667777777777774

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.65  E-value=2.9  Score=40.43  Aligned_cols=135  Identities=17%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             hhHHHHHhhccC----CHHHHHHHHHHHHHhccCC--CchHH-HHHHHhCcHHHHHHhcC----CCChhhHHHHHHHHhh
Q 037142          102 CLPTLAQLVHSN----DEHVMSNACWGLSLLCDGG--KNDEI-QAVIEAGVCPRLVKLLG----HPSQSVLTQALHTVGN  170 (383)
Q Consensus       102 ~i~~l~~ll~~~----~~~~~~~~~~~l~~l~~~~--~~~~~-~~~~~~~~i~~l~~~L~----~~~~~v~~~a~~~L~~  170 (383)
                      .+..+..+++++    .+.++..++.+++.+....  ..+.. ..+.+ .+++.+...|.    ..+..-+...+++|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            566677777643    4567777777776665421  11111 11222 25556555553    3566667888999998


Q ss_pred             hhcCCCccccceecCCChHHHHHhhc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--CchhHH
Q 037142          171 IARGDYSQTLYIINCGALPYLLGLLI-D-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--AVFYIK  246 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~i~~l~~ll~-~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~  246 (383)
                      +...           ..++.+..++. . ..+..+|..|+++|..++...+...        -+.+++++.+  .++++|
T Consensus       473 ~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      473 AGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             cCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHH
Confidence            8532           23555666665 2 1256799999999999876443433        3345666654  578899


Q ss_pred             HHHHHHHHHh
Q 037142          247 KEAAWAISNA  256 (383)
Q Consensus       247 ~~a~~~l~~l  256 (383)
                      ..|+.+|...
T Consensus       534 iaA~~~lm~t  543 (574)
T smart00638      534 MAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHhc
Confidence            9988888665

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.64  E-value=0.38  Score=38.66  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             chHHHHHHHhCcHHHHHHhcCC---------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHH
Q 037142          134 NDEIQAVIEAGVCPRLVKLLGH---------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIK  204 (383)
Q Consensus       134 ~~~~~~~~~~~~i~~l~~~L~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~  204 (383)
                      ..-++.+++.|++..|+..|..         .+......+++||..++.........+-..+++..+...+.++ +..++
T Consensus        97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r  175 (187)
T PF06371_consen   97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTR  175 (187)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHH
T ss_pred             chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHH
Confidence            3456677788888888888743         4557888899999999866554444445578999999999988 99999


Q ss_pred             HHHHHHHHHHh
Q 037142          205 NYACWIISNIT  215 (383)
Q Consensus       205 ~~a~~~l~nl~  215 (383)
                      ..++.+|+.+|
T Consensus       176 ~~~leiL~~lc  186 (187)
T PF06371_consen  176 KLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.61  E-value=7.9  Score=38.38  Aligned_cols=323  Identities=11%  Similarity=0.035  Sum_probs=162.6

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC------CCChhhhhch
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP------RPIFDQVRPC  102 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~  102 (383)
                      .|.-+...++..|..++.+. .+...+++.|++..|+..-.-+   +...-...+|..+.....      .....++..+
T Consensus       365 ~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~v  440 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQV  440 (1516)
T ss_pred             ccccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHH
Confidence            45556677888888888665 7777888888887777665322   111222233333333221      1123445667


Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--------C-----------ChhhHHH
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--------P-----------SQSVLTQ  163 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--------~-----------~~~v~~~  163 (383)
                      +..-+.++.-.....+.++..++......  ..-...+-....++.|+.++++        .           +.+....
T Consensus       441 v~~~~~l~~cs~~~~~~~~~~ff~~~f~f--rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~h  518 (1516)
T KOG1832|consen  441 VKLAIELLDCSQDQARKNSALFFAAAFVF--RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFH  518 (1516)
T ss_pred             HHHHHHHHhcchhhccchHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhh
Confidence            77777777744433443333222211111  1111112122344555555532        1           1122223


Q ss_pred             HHHHHhhhhc-----CCCccccceecCCChHHHHHhhccccc-----hhHHHHHHHHHHHHhcCCH-------HHHHHHH
Q 037142          164 ALHTVGNIAR-----GDYSQTLYIINCGALPYLLGLLIDNHK-----TSIKNYACWIISNITAGNR-------EQIQAVI  226 (383)
Q Consensus       164 a~~~L~~l~~-----~~~~~~~~l~~~~~i~~l~~ll~~~~~-----~~~~~~a~~~l~nl~~~~~-------~~~~~~~  226 (383)
                      .|.+|+..-.     ..+.....-++.+..+..+.-+.....     ...-+..++-+-.+....+       ...+.++
T Consensus       519 tC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenfl  598 (1516)
T KOG1832|consen  519 TCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFL  598 (1516)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHH
Confidence            4444543321     112222223334444444443332211     1222334444444333222       2344455


Q ss_pred             hcCChHHHHHHhhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHHhhcC----CCCH
Q 037142          227 DAGLIGPLVNLLQNA--------VFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLCDLLL----CPDP  286 (383)
Q Consensus       227 ~~~~l~~L~~ll~~~--------~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~~ll~----~~~~  286 (383)
                      ..+++..+..+...+        ..+....|..+|+-+...  ++....+...        .++..+++...    ..|+
T Consensus       599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            666777777766532        234555666666655554  2333333221        24555555433    2388


Q ss_pred             HHHHHHHHHHHHHHHhchhcccC--------------cCC--------CCcccHHHHHHHHhccHHHHHHHhcCCCH---
Q 037142          287 QIVTVCLKALENILKVGEAEKNT--------------DTD--------IGDVNQYAQLVEEAKGLEKIENLQRHDNY---  341 (383)
Q Consensus       287 ~v~~~al~~l~~l~~~~~~~~~~--------------~~~--------~~~~~~~~~~l~~~~~~~~L~~l~~~~~~---  341 (383)
                      +++..|+.+|.|++...+...+.              +..        .....+.+...+..+|+..|..|+..+++   
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            99999999999998765322111              000        01123445556677899999999887553   


Q ss_pred             --HHHHHHHHHHHHhcCCCC
Q 037142          342 --EIHEKSAKILETYWCGRV  359 (383)
Q Consensus       342 --~v~~~a~~~l~~~~~~~~  359 (383)
                        .++..|...|-.+..++.
T Consensus       757 aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             HHHHHHHHHHHHhccccCcH
Confidence              588888888887777665

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.55  E-value=2.5  Score=33.67  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-------------------CChHHHHHHhcCCCChhHHHHH
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-------------------AALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-------------------g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      +.+--++.++++.+|..|+.++..+..+...+-...-+.                   ..-..|+..|....+..+..+.
T Consensus        43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~  122 (182)
T PF13251_consen   43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL  122 (182)
T ss_pred             chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            344445668999999999999999886654333222211                   1123345556555677888899


Q ss_pred             HHHHHhhcCCCCCC--ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           81 TWTLSNLCGGKPRP--IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        81 ~~~L~~l~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      +.++..+....|..  .......++..+..++.+.|.+++..++.++..+...
T Consensus       123 lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  123 LKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            99999999987544  4455577778888888899999999999999888754

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.44  E-value=1.3  Score=36.04  Aligned_cols=137  Identities=7%  Similarity=0.112  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc----cchhHHHHHHHHHHHHhcCCH-HHHHHHHhcCChHHHH
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN----HKTSIKNYACWIISNITAGNR-EQIQAVIDAGLIGPLV  235 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~----~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~  235 (383)
                      ...++..|..++++. +....++++.+--.+..++...    ..+.+|..++++++.+..+++ .....+....++|.+.
T Consensus       117 vcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            345666666666554 4566678877655555665432    246788899999999998654 5555556899999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHHhh-cCCCCHHHHHHHHHHHHHHH
Q 037142          236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLCDL-LLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~~l-l~~~~~~v~~~al~~l~~l~  300 (383)
                      .++..++.--+.-|+..+..+..+  ....+++++.        .++..++.- .+.+...+.+.++++-.+++
T Consensus       196 rIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs  267 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS  267 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence            999999888888888888888765  4555655541        223333332 23455566666666655554

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.43  E-value=1.1  Score=41.67  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142          228 AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK  307 (383)
Q Consensus       228 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~  307 (383)
                      .+++..++.-..+++..||..++..|+-+...-  ..+...+-++++..|.+-+-+.++-|+..|+.+|+.+=+...+..
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            456777777778889999999999998887552  234444455677777777778889999999999998875443321


Q ss_pred             cCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 037142          308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKI  350 (383)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~  350 (383)
                               +.....        .+.-++++|+.+|++.|.--
T Consensus       168 ---------n~~~n~--------l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         168 ---------NRIVNL--------LKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             ---------HHHHHH--------HHHHHhcCcHHHHHHHHHHH
Confidence                     111111        12345788999998887643

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=12  Score=36.65  Aligned_cols=270  Identities=14%  Similarity=0.053  Sum_probs=132.3

Q ss_pred             HHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHh--cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           20 PIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLG--EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        20 ~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      ..+.++|.++ |.-++-.+++++.-...|-.-..+.+..  .+....+.+++..-+.-+.+...+..++.+.........
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            4567777774 6677777888887766543211122111  233445566664444556677777777777654311111


Q ss_pred             hhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCC--CchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHH
Q 037142           97 DQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGG--KNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTV  168 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L  168 (383)
                      .....+++.+-.+=+  .+.+-++...+.++.++...-  .+.....     ++=.++++--+    +.....+.+...-
T Consensus       609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~-----fL~pVIel~~D~~sP~hv~L~EDgmeLW  683 (978)
T KOG1993|consen  609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP-----FLYPVIELSTDPSSPEHVYLLEDGMELW  683 (978)
T ss_pred             HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH-----HHHHHHHHhcCCCCCceeehhhhHHHHH
Confidence            122223333322222  344667777888888877541  1111111     12222333222    1222333344333


Q ss_pred             hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142          169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE  248 (383)
Q Consensus       169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~  248 (383)
                      .....+.+.....+.  +++|.+...+... .+.+ ..++.++....--+......-...|+...+.+++.+-..+-...
T Consensus       684 ~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~a  759 (978)
T KOG1993|consen  684 LTTLMNSQKLTPELL--LLFPHLLYIIEQS-TENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQA  759 (978)
T ss_pred             HHHHhcccccCHHHH--HHHHHHHHHHHhh-hhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            333333333222232  5678888887654 3333 34444554433222122222223566777777776543333344


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHHHHH
Q 037142          249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALENIL  300 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~~l~  300 (383)
                      .+.++..+...  .+........++++.++..+-  .+.|.+.-.-+..+.++.
T Consensus       760 vLkiveili~t--~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~  811 (978)
T KOG1993|consen  760 VLKIVEILIKT--NPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS  811 (978)
T ss_pred             HHHHHHHHHhh--hHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence            45555555543  345555566778888777543  345555555555555444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.18  E-value=1.1  Score=43.63  Aligned_cols=136  Identities=17%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             hhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCch--------HHHHHHHhCcHHHHHHhcC----CCChhhHHHHH
Q 037142          102 CLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKND--------EIQAVIEAGVCPRLVKLLG----HPSQSVLTQAL  165 (383)
Q Consensus       102 ~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~~~i~~l~~~L~----~~~~~v~~~a~  165 (383)
                      .+..+..+++    ..++.++..++.+++.+.......        .........+++.+...+.    ..+..-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            4555555555    345677777777777666431001        0011122235666666665    36678888999


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc--C
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDN--HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN--A  241 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~--~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~  241 (383)
                      ++|+|+..  +         ..++.+..++...  ....+|..|++++..++...+...        .+.++.++.+  .
T Consensus       512 kaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e  572 (618)
T PF01347_consen  512 KALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTE  572 (618)
T ss_dssp             HHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS
T ss_pred             HHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCC
Confidence            99999952  1         3467777766543  267889999999999977665443        3456777765  4


Q ss_pred             chhHHHHHHHHHHHh
Q 037142          242 VFYIKKEAAWAISNA  256 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l  256 (383)
                      +.++|..|..+|...
T Consensus       573 ~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  573 DPEVRIAAYLILMRC  587 (618)
T ss_dssp             -HHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHhc
Confidence            788999998888663

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=91.96  E-value=1.3  Score=33.53  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~  346 (383)
                      .+..+..-+.++++.++..|+..|..++..++.            .+...+...+++..|..+...      .+..|+++
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k  106 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE------------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK  106 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            466677778899999999999999999987764            366667788888888888853      56889999


Q ss_pred             HHHHHHHhcCCCCC
Q 037142          347 SAKILETYWCGRVV  360 (383)
Q Consensus       347 a~~~l~~~~~~~~~  360 (383)
                      +..++..+-.....
T Consensus       107 il~li~~W~~~f~~  120 (139)
T cd03567         107 IIELLYSWTLELPH  120 (139)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999988765543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.89  E-value=8.9  Score=35.17  Aligned_cols=136  Identities=13%  Similarity=0.113  Sum_probs=90.6

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHhccCCCc---hHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHhhhhc
Q 037142          104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKN---DEIQAVIEAGVCPRLVKLLGH-------PSQSVLTQALHTVGNIAR  173 (383)
Q Consensus       104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~i~~l~~~L~~-------~~~~v~~~a~~~L~~l~~  173 (383)
                      ..+..+...++.+-+-.++.....++.+ .+   .+.+.+.+.-+++.+-+++.+       ++.-.+.-++..|..+|+
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~-~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKN-DDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcc-cchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3466777777777788888888888877 32   233446676566777788765       223334556777777776


Q ss_pred             CCCc-cccceecCCChHHHHHhhccccchh------HHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCch
Q 037142          174 GDYS-QTLYIINCGALPYLLGLLIDNHKTS------IKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       174 ~~~~-~~~~l~~~~~i~~l~~ll~~~~~~~------~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                      ..+- ....++  +-||.+..+++...+++      +...+..+|..++.. +...+.++..|.++.+.++..-++.
T Consensus        93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~  166 (698)
T KOG2611|consen   93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDG  166 (698)
T ss_pred             ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCC
Confidence            5431 111123  34788888887543444      666777888777665 5778889999999999988765433

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.27  E-value=6.8  Score=37.91  Aligned_cols=168  Identities=17%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             hchhHHHHHhhccCCHH--HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHHhhhhc
Q 037142          100 RPCLPTLAQLVHSNDEH--VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTVGNIAR  173 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~  173 (383)
                      ...+..+.+.+.++...  ....++..+...... ++.        ..+..+..++.+    +++.++..++-+++.++.
T Consensus       356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~-Pt~--------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~  426 (574)
T smart00638      356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY-PTE--------EILKALFELAESPEVQKQPYLRESALLAYGSLVR  426 (574)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc-CCH--------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence            34666777777765422  233333333334333 221        245666777765    356677777777777763


Q ss_pred             C----CCccccceecCCChHHHHHhhcc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---cCch
Q 037142          174 G----DYSQTLYIINCGALPYLLGLLID---NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ---NAVF  243 (383)
Q Consensus       174 ~----~~~~~~~l~~~~~i~~l~~ll~~---~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~  243 (383)
                      .    .+... ..+-..+++.+...+..   ..+...+...+++|+|+....           .++.+..++.   ..+.
T Consensus       427 ~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~  494 (574)
T smart00638      427 RYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLST  494 (574)
T ss_pred             HHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCH
Confidence            2    21111 11112355566555532   115556777899999986532           2334444444   2367


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC--CCCHHHHHHHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALE  297 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~l~  297 (383)
                      .+|..|+++|..++...+..         +.+.|+.++.  ..++++|..|..+|.
T Consensus       495 ~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm  541 (574)
T smart00638      495 FIRLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVRMAAVLVLM  541 (574)
T ss_pred             HHHHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence            89999999999887543322         3344555554  357789987766553

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=91.07  E-value=4.5  Score=29.72  Aligned_cols=89  Identities=12%  Similarity=0.226  Sum_probs=58.8

Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH-HHhccHH
Q 037142          252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV-EEAKGLE  330 (383)
Q Consensus       252 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~  330 (383)
                      =|++++.. +......     ++..|.+=|+.+++.|+..++..|..++..+...            +...+ .....+.
T Consensus        24 Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik   85 (122)
T cd03572          24 EIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIR   85 (122)
T ss_pred             HHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHH
Confidence            34455544 3333433     5778888898889999999999999999876533            33322 2233344


Q ss_pred             HHHHHhc--------CCCHHHHHHHHHHHHHhcCCC
Q 037142          331 KIENLQR--------HDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       331 ~L~~l~~--------~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      .+.+...        .++..|+..|.+++..+|.++
T Consensus        86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            4444433        244579999999999988875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.76  E-value=2.5  Score=31.82  Aligned_cols=76  Identities=12%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC---CCHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH---DNYEIHEKSAK  349 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~v~~~a~~  349 (383)
                      .+..|..-++++++.++..|+..|..++..++.            .+...+....++..|..+...   .+.+|++++..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~------------~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~  105 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK------------PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALE  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh------------HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            466777778889999999999999999987654            356667676777778888764   57889999999


Q ss_pred             HHHHhcCCCCC
Q 037142          350 ILETYWCGRVV  360 (383)
Q Consensus       350 ~l~~~~~~~~~  360 (383)
                      ++..+......
T Consensus       106 ll~~W~~~f~~  116 (133)
T cd03561         106 LILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHhcC
Confidence            99887665443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.66  E-value=1.2  Score=33.51  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCH-H-HHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNY-E-IHEKSAKI  350 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~-~-v~~~a~~~  350 (383)
                      .+..|..-+.++++.++..|+..+..++..++.            .+...+...++++.|..+...+.. . |++++..+
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~------------~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l  105 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS------------KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------------HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            466677777889999999999999999987653            366777888889999988776433 3 99999999


Q ss_pred             HHHhcCCCCCCC
Q 037142          351 LETYWCGRVVGP  362 (383)
Q Consensus       351 l~~~~~~~~~~~  362 (383)
                      +..+......+|
T Consensus       106 i~~W~~~f~~~~  117 (133)
T smart00288      106 IQEWADAFKNDP  117 (133)
T ss_pred             HHHHHHHHcCCC
Confidence            988777654433

Unpublished observations. Domain of unknown function.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.29  E-value=6  Score=29.73  Aligned_cols=76  Identities=7%  Similarity=-0.080  Sum_probs=62.4

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhchh
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC---PDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      ++..|..-+.++++.++..|..+|-.+..+++......+.+..++..|+.++..   .++.|+..++..+.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            355677778889999999999999999999887777787777888889998875   4778999999988887765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=20  Score=35.33  Aligned_cols=128  Identities=19%  Similarity=0.192  Sum_probs=85.0

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCC--CCCCh--hh----h
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGK--PRPIF--DQ----V   99 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~--~~~~~--~~----~   99 (383)
                      +||.++..|=++|......          .|..-.+++++.+.. +..++..|.-.+-|.++..  +..+.  ..    .
T Consensus        17 pdps~rk~aEr~L~~~e~q----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~   86 (960)
T KOG1992|consen   17 PDPSVRKPAERALRSLEGQ----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDR   86 (960)
T ss_pred             CCCccCchHHHHHHHhccC----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHH
Confidence            6688888887777766543          355556888885554 7888999999999998844  22211  11    1


Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                      ..+-..++.++-+....++.....+++-++...-++....     ++|.|+..++..|-.+....+.+-..+
T Consensus        87 e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-----Ll~dL~~~ls~~D~~~~~gVL~tahsi  153 (960)
T KOG1992|consen   87 EQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-----LLPDLVARLSSGDFNVINGVLVTAHSI  153 (960)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-----HHHHHHhhccccchHHHHHHHHHHHHH
Confidence            2344456677778888999999999999997612222222     578888888877765555555544433

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.53  E-value=2.9  Score=31.46  Aligned_cols=73  Identities=11%  Similarity=-0.011  Sum_probs=59.5

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhc
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVG  303 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~  303 (383)
                      +..|..-+.++++.++..|...+-.+..+++......+.+.+++..|..++....  +.|+..++..+..-....
T Consensus        39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4456667778999999999999999999988888888888899999999988653  348888888887776544

Unpublished observations. Domain of unknown function.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.40  E-value=3.8  Score=32.12  Aligned_cols=110  Identities=22%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC---C
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLNNHENLSMKRIATWTLSNLCGGK---P   92 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~---~   92 (383)
                      .+..+..+|.+.++.-|-.++..+...+..++  .+.+.+.+  .+..+++.|++..+..+.+.++.++..+....   |
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45567788888888888888888888776431  33443333  46778889976667788888888888887544   3


Q ss_pred             CCChhhh----hchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           93 RPIFDQV----RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        93 ~~~~~~~----~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      .......    ..+++.+++++++  ......++.++..+...
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            2222222    4455555565554  56666777777777765

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=89.25  E-value=23  Score=34.61  Aligned_cols=121  Identities=12%  Similarity=0.026  Sum_probs=79.4

Q ss_pred             CCChhhhhchhHHHHHhhc-----c---CCHHHHHHHHHHHHHhcc--CCCchHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 037142           93 RPIFDQVRPCLPTLAQLVH-----S---NDEHVMSNACWGLSLLCD--GGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~-----~---~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~  162 (383)
                      ++......|+++.+...+.     +   ++..-.+-+++.+.++..  . .+.....+.+.-+++.++..++++-.-++.
T Consensus       400 Krke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f~s~ygfL~S  478 (970)
T COG5656         400 KRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAFRSNYGFLKS  478 (970)
T ss_pred             ccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhhcCcccchHH
Confidence            3444556889999999884     1   123334445555555554  2 233344455555778888888998888999


Q ss_pred             HHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142          163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      .+|..+..+...-++.   -+-..+.+....++.+. +-.++..|.-++..+..+.
T Consensus       479 race~is~~eeDfkd~---~ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~  530 (970)
T COG5656         479 RACEFISTIEEDFKDN---GILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNE  530 (970)
T ss_pred             HHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhch
Confidence            9999999885332221   11123456667778887 8889999999988887654

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.19  E-value=4.7  Score=28.34  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 037142          270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK  349 (383)
Q Consensus       270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~  349 (383)
                      ...++..|++.+..+++.....++..+..+++...              ....+.+.|+.+-|.++-..-+++.+....+
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            34578888888888888888889999999887543              4556889999999999998888888888888


Q ss_pred             HHHH
Q 037142          350 ILET  353 (383)
Q Consensus       350 ~l~~  353 (383)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8764

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.05  E-value=20  Score=34.81  Aligned_cols=146  Identities=17%  Similarity=0.130  Sum_probs=90.7

Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCCh----hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           64 LLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIF----DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      |.+-| +-+|.+++.+|+..+.++.--. |....    ..+..-...+.++++++-+.+|..+...++.+... .-+.+.
T Consensus       179 l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~-fWe~iP  256 (1005)
T KOG1949|consen  179 LWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK-FWEMIP  256 (1005)
T ss_pred             HHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHcC
Confidence            44445 5678999999999998876322 32211    12355667788899999999999988887776643 122222


Q ss_pred             HHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          139 AVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      ..+-..++..+..-+.. ...+|+......|..+..+...  ..+++ -++|.+-..+.+. .+.||.++...|..+-
T Consensus       257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHH
Confidence            11111233344443333 4568888888888888754432  11222 2344555556666 8899999988887774

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.95  E-value=30  Score=37.70  Aligned_cols=272  Identities=14%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-Chhhh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-IFDQV   99 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~   99 (383)
                      .++..|..+++..+-.+..+++.++..-++  ..+ -.+..+.++.-+.+..|+-.|.--.-+++.+-++.... .....
T Consensus       880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl  956 (2067)
T KOG1822|consen  880 LIVNSLINPNPKLRCAAAEALARLAQVVGS--APF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHL  956 (2067)
T ss_pred             HHhhhhccCChHHHHHHHHHHHHHHHhccc--cch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhc
Confidence            334444456666666666666666642111  111 12234556666655556655655566677776665222 23333


Q ss_pred             hchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-C--ChhhHHHHHHHHh------
Q 037142          100 RPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-P--SQSVLTQALHTVG------  169 (383)
Q Consensus       100 ~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~--~~~v~~~a~~~L~------  169 (383)
                      ...+..+..+.+++ ++.++..++.++..+... ..+.....++. .+..+..+|.+ +  ..++...--+++.      
T Consensus       957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s-~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen  957 NTSVSILLALATDSTSPVVQTWSLHALALILDS-SGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred             ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC-CCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence            55677788888765 469999999999988876 44444444443 33444555543 2  2223322223332      


Q ss_pred             hhhcCCCcccc--------ceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142          170 NIARGDYSQTL--------YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA  241 (383)
Q Consensus       170 ~l~~~~~~~~~--------~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  241 (383)
                      ++........+        .-.....+-...-+++++ ++-++..++.++.++-...+....   -.-+++.+..++.+.
T Consensus      1035 alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             HHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence            22211110000        001111122222334455 888999999999887654332110   012344455544444


Q ss_pred             chhHHHHHHHHHHHhcCCCCH------------------HHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 037142          242 VFYIKKEAAWAISNATFGGTH------------------EQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILK  301 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l~~~~~~------------------~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~  301 (383)
                      ..-.|..+...+..+......                  ......-+.|.--.+..+++. .|....+.....+.++..
T Consensus      1111 ~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred             hhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            333333333333333222100                  000010134444555666653 355677777777777543

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=88.85  E-value=6.6  Score=33.03  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142           14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~   92 (383)
                      -+...++.++++++.++..+    -..++....+.-...-..+..|-++.|.+++.+.. +.-+|..|+.+|..+....+
T Consensus        70 re~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   70 REERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            34566777777776544311    11122211111011111223466888888885333 56678899999999998877


Q ss_pred             CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142           93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR  148 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~  148 (383)
                      ........-+-..+...+..++..+....+..+..|.-..--+.++...+.|+++.
T Consensus       146 ~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  146 ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            66555555555555555655554444444444444442201234444555555543

The function of this family is unknown.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.75  E-value=0.99  Score=38.71  Aligned_cols=161  Identities=17%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhcC--ChHHHHHHhc---CCCChhHHHHHHHHHHhhcCCCCCCChhhh-h--chh
Q 037142           32 DIRMQSVWALGNIAAESPRFRDLVLGEA--ALIPLLTQLN---NHENLSMKRIATWTLSNLCGGKPRPIFDQV-R--PCL  103 (383)
Q Consensus        32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~--~~i  103 (383)
                      +-+.-++..+.-++.+ +.....+...+  ....+..++.   ++.....+-.++++++|+..+...+..... .  .++
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~  156 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL  156 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence            3355555555544443 33333333222  2344444442   234677788899999999988654433222 1  233


Q ss_pred             HHHHHhhccC---CHHHHHHHHHHHHHhccCCCchHH-HHHHHhCcHHHHHHhc-CC-CChhhHHHHHHHHhhhhcCCCc
Q 037142          104 PTLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEI-QAVIEAGVCPRLVKLL-GH-PSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus       104 ~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~i~~l~~~L-~~-~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ..+.....+.   +..++..++..+.|++.. ..... ..-....++..+.+.+ .. .|+++...++-++++++...+.
T Consensus       157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~-~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVL-LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH-HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            3333333333   688888999999988743 11111 0001112455666633 33 7899999999999999966654


Q ss_pred             cccceecCCChHHHHHh
Q 037142          178 QTLYIINCGALPYLLGL  194 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~l  194 (383)
                      ........|+-..+...
T Consensus       236 ~~~~~~~l~~~~~~~~~  252 (268)
T PF08324_consen  236 AKQLAKSLDVKSVLSKK  252 (268)
T ss_dssp             HHHHCCCCTHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHH
Confidence            44433333444443333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=27  Score=34.49  Aligned_cols=159  Identities=11%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHH-------HHhc---CCCChhHHHHHHHHHH
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLL-------TQLN---NHENLSMKRIATWTLS   85 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~-------~~L~---~~~~~~~~~~a~~~L~   85 (383)
                      ..+|.++.+|+++...+-.+|+.++-.+-.-.+.....+... .+.+.+.       ..+.   +.+|+-+.+..++.+.
T Consensus       498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~  577 (960)
T KOG1992|consen  498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS  577 (960)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence            368899999999999999999999987654322212122222 2222122       2221   1223334444444333


Q ss_pred             hhcCCCCCCChhhhhchhHHHHHhhccC-CHH----HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142           86 NLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEH----VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV  160 (383)
Q Consensus        86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v  160 (383)
                      -+=..--........+..+.+.+.-+++ +|.    +.+..+.++...|.. ++.....+.+. ++|.+...+..+=.+.
T Consensus       578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs~~e~a-L~p~fq~Il~eDI~Ef  655 (960)
T KOG1992|consen  578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVSSLEEA-LFPVFQTILSEDIQEF  655 (960)
T ss_pred             hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            2211100001112233333333333433 333    344455555556655 44444444443 7777777787777777


Q ss_pred             HHHHHHHHhhhhcCCCc
Q 037142          161 LTQALHTVGNIARGDYS  177 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~  177 (383)
                      .-.++..++.+...+..
T Consensus       656 iPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  656 IPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            88888888888765543

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=88.23  E-value=3.6  Score=35.59  Aligned_cols=93  Identities=11%  Similarity=0.076  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc-cceecCCChHHHHHhhcc
Q 037142          119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT-LYIINCGALPYLLGLLID  197 (383)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~l~~ll~~  197 (383)
                      ....|++..-.   ..+.+...... ++|.++.++++.++.++..++.+|..+....+... ..+.+.|..+.+.+.+..
T Consensus        98 ~~l~w~v~~~~---~~~~i~~~~~l-iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~  173 (282)
T PF10521_consen   98 HVLSWIVLSQL---DRPWISQHWPL-IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFP  173 (282)
T ss_pred             HHHHHHHHhcC---CcchHHHhhhH-HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHH
Confidence            34556666122   22333333332 78999999999999999999999999997655322 225667766655544321


Q ss_pred             -----------ccchhHHHHHHHHHHHHh
Q 037142          198 -----------NHKTSIKNYACWIISNIT  215 (383)
Q Consensus       198 -----------~~~~~~~~~a~~~l~nl~  215 (383)
                                 .+...+...+.-++..++
T Consensus       174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~  202 (282)
T PF10521_consen  174 CLYYLPPITPEDESLELLQAAYPALLSLL  202 (282)
T ss_pred             HhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence                       114456666666666663

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=87.98  E-value=10  Score=31.96  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             CcHHHHHHhcCCCChh--------hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-chhHHHHHHHHHHHH
Q 037142          144 GVCPRLVKLLGHPSQS--------VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-KTSIKNYACWIISNI  214 (383)
Q Consensus       144 ~~i~~l~~~L~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-~~~~~~~a~~~l~nl  214 (383)
                      ..++.++++++.++.-        +....-.++..++.            |-++.+..++.++. +.-+|..|+.++..+
T Consensus        73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l  140 (249)
T PF06685_consen   73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAFL  140 (249)
T ss_pred             hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            4678899998765431        22222333333332            45677777776552 567899999999999


Q ss_pred             hcCCHHHHHHHHh
Q 037142          215 TAGNREQIQAVID  227 (383)
Q Consensus       215 ~~~~~~~~~~~~~  227 (383)
                      +...+..++.+++
T Consensus       141 ~~~~~~~Re~vi~  153 (249)
T PF06685_consen  141 VHEGPISREEVIQ  153 (249)
T ss_pred             HHcCCCCHHHHHH
Confidence            9877777776654

The function of this family is unknown.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=87.81  E-value=24  Score=33.10  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      +.+..++.+..++.++...+.++.++-.+.... .........++..|.......  +....+..++.||+..  +-.. 
T Consensus       176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S--~~g~-  249 (464)
T PF11864_consen  176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS--HLGH-  249 (464)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC--ccHH-
Confidence            334444455434444455566666666655543 112233344555555553333  6666677788888865  2111 


Q ss_pred             HHHHhCcHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCCc-cccceecCC--ChHHHHHhhccccchhHHHHHHH
Q 037142          139 AVIEAGVCPRLVKLLGH------PSQSVLTQALHTVGNIARGDYS-QTLYIINCG--ALPYLLGLLIDNHKTSIKNYACW  209 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~--~i~~l~~ll~~~~~~~~~~~a~~  209 (383)
                           ..+..|..+|.+      ++..+..=|+..++.+.-+... ....+--.-  +++.+...++.. ++.+-.+.+.
T Consensus       250 -----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~  323 (464)
T PF11864_consen  250 -----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILL  323 (464)
T ss_pred             -----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHH
Confidence                 145677777732      3556667788888887765522 222222223  678888888887 8888888888


Q ss_pred             HHHHHhc
Q 037142          210 IISNITA  216 (383)
Q Consensus       210 ~l~nl~~  216 (383)
                      .+.++..
T Consensus       324 ~i~~ll~  330 (464)
T PF11864_consen  324 LINRLLD  330 (464)
T ss_pred             HHHHHHh
Confidence            8888874

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=87.43  E-value=2.7  Score=41.74  Aligned_cols=131  Identities=13%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHh
Q 037142           30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQL  109 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~l  109 (383)
                      .+.++.++.-.|++++-......+..     +|.|++-|..+....++.+.+-+++-+|.+.    .......+|.+...
T Consensus       944 ~~~vra~~vvTlakmcLah~~LaKr~-----~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRLAKRL-----MPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence            36788899999999997666655544     6899999976777788888888888888753    12346689999999


Q ss_pred             hccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142          110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       110 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      |.++++-+|++++-.|.+|...   +..++--  .++=.++.-|-+.++.++..+=.+++.+...
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G--~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQF---GIVKWNG--ELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhh---hhhhcch--hhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999965   2222211  1222333334456677888887777777643

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.37  E-value=32  Score=33.98  Aligned_cols=261  Identities=16%  Similarity=0.123  Sum_probs=132.3

Q ss_pred             ChHHHHHHHHHHHHHhcC--ChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh---hhhchhH
Q 037142           30 SDDIRMQSVWALGNIAAE--SPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD---QVRPCLP  104 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~  104 (383)
                      ..-+|+..+|.++.-.+.  ..+.+..+     -..+++++++..|.-++-.++.++.-+..+-......   .......
T Consensus       500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~  574 (978)
T KOG1993|consen  500 SRIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFV  574 (978)
T ss_pred             hhHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHH
Confidence            346788899999887752  12222222     3567888854447777888888888777665333222   2255666


Q ss_pred             HHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccc
Q 037142          105 TLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLY  181 (383)
Q Consensus       105 ~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~  181 (383)
                      .+.++++. +.-+.+..++..+..+... ..+.+...... +++.+-.+-+  ++++-++.+.+.+|.+++..-..... 
T Consensus       575 ~lfkll~~~~e~Dtk~~VL~~ls~lI~r-~~e~I~P~~~~-ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~-  651 (978)
T KOG1993|consen  575 LLFKLLKAVEECDTKTSVLNLLSTLIER-VSEHIAPYAST-IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF-  651 (978)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHhhhHHHHH-HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-
Confidence            66777763 3456677788888888766 44444332221 3333222222  25667788889999999854332211 


Q ss_pred             eecCCChHHHHHhhcccc---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          182 IINCGALPYLLGLLIDNH---KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       182 l~~~~~i~~l~~ll~~~~---~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      .. ..++-+++.+-.+.+   +..+.+.+...=+....+.+.....+  .+++|.+...+......++. +...+..-.-
T Consensus       652 ~~-~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l--l~L~p~l~~~iE~ste~L~t-~l~Ii~sYil  727 (978)
T KOG1993|consen  652 EF-YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL--LLLFPHLLYIIEQSTENLPT-VLMIISSYIL  727 (978)
T ss_pred             cc-hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH--HHHHHHHHHHHHhhhhhHHH-HHHHHHHHHh
Confidence            11 122333333322221   22233333322222222222222222  23566666666544333322 2222221111


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      -.+...... ...|+.+.+.+++.+-..+-....+..+..++...
T Consensus       728 Ld~~~fl~~-y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~  771 (978)
T KOG1993|consen  728 LDNTVFLND-YAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTN  771 (978)
T ss_pred             hccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence            112232222 33467777888776555555555666666665543

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.13  E-value=44  Score=35.43  Aligned_cols=148  Identities=16%  Similarity=0.057  Sum_probs=91.0

Q ss_pred             CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH
Q 037142          144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ  223 (383)
Q Consensus       144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~  223 (383)
                      +++|.|-.-|.+++..++..|...++.+......... =-........+.-+.+. +..+|..++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            5889999999999999999999999999765543211 00113344445555566 889999999999888776655443


Q ss_pred             HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      ....     .+.--..+.++.+|.....++..+...  .-.... ... .+..+-+-+.++...||..|+..|..+...
T Consensus       337 ~~~~-----~~~l~~~~~D~~~rir~~v~i~~~~v~--~~~l~~-~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 ASTI-----LLALRERDLDEDVRVRTQVVIVACDVM--KFKLVY-IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHHH-----HHHHHhhcCChhhhheeeEEEEEeehh--Hhhhhh-hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            3211     111112234555444433222222111  111122 222 566666677788999999999999988874

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=86.92  E-value=13  Score=35.16  Aligned_cols=223  Identities=14%  Similarity=0.038  Sum_probs=120.4

Q ss_pred             cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-----------CCChhhHHHHHHHHhhhhcCCCcccc
Q 037142          112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-----------HPSQSVLTQALHTVGNIARGDYSQTL  180 (383)
Q Consensus       112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~  180 (383)
                      +++.++...+-..|..+.....        +..++..|+.+..           .-++.++...+..|+.=.   .   .
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e--------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~---A  313 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE--------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---I---A  313 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC--------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---H---H
Confidence            4456677777777766664311        1123444444433           135566655555553311   1   0


Q ss_pred             ceecCCChHHHHHhhccc-cchhHHHHHHHHH---HHHhcCCHHHHHHHHhcCChHHHHHHhh--------cCchhHHHH
Q 037142          181 YIINCGALPYLLGLLIDN-HKTSIKNYACWII---SNITAGNREQIQAVIDAGLIGPLVNLLQ--------NAVFYIKKE  248 (383)
Q Consensus       181 ~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l---~nl~~~~~~~~~~~~~~~~l~~L~~ll~--------~~~~~v~~~  248 (383)
                      .-.-...+..+...+.+. .+.+++..++..+   .......+...-..+...+...+...+.        ..+...|..
T Consensus       314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~  393 (501)
T PF13001_consen  314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL  393 (501)
T ss_pred             HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence            001123344444444333 2456676776666   5554433222222222223333333332        247789999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhcc
Q 037142          249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKG  328 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  328 (383)
                      +..+|+.++.... ....  -+-+++..|++.+..++++++..+-.||..++.........      ...-....    .
T Consensus       394 aYe~lG~L~~~~p-~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~~~~~~~----~  460 (501)
T PF13001_consen  394 AYETLGLLAKRAP-SLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------EDEQKRLL----L  460 (501)
T ss_pred             HHHHHHHHHccCc-cccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hhHHHHHH----H
Confidence            9999999998743 2211  12357889999998889999999888988888765432210      00000000    0


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142          329 LEKIENLQRHDNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       329 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      ...+.....+....++..|.+....+|..++.+
T Consensus       461 ~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~  493 (501)
T PF13001_consen  461 ELLLLSYIQSEVRSCRYAAVKYANACFPFSDVP  493 (501)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence            111222333555668899999999999887754

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.69  E-value=23  Score=31.62  Aligned_cols=195  Identities=10%  Similarity=0.007  Sum_probs=105.1

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      .++..+..++.++.++......+.++..-+...   .......++..+.+-+.+..+.+|+..+.++........+....
T Consensus        22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~   98 (339)
T PF12074_consen   22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL   98 (339)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence            345677888877778887777777766555432   22334667888888888888889999998888887510112222


Q ss_pred             HHHHhCcHHHHHHhcCC----CChhhH---HHHHHHHhhhhcCCCccccc--------eec--CCC--hHHHHHhhcccc
Q 037142          139 AVIEAGVCPRLVKLLGH----PSQSVL---TQALHTVGNIARGDYSQTLY--------IIN--CGA--LPYLLGLLIDNH  199 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~----~~~~v~---~~a~~~L~~l~~~~~~~~~~--------l~~--~~~--i~~l~~ll~~~~  199 (383)
                      .+.. .++|.+...++.    +-+...   ..+..++..+..........        ..+  ..+  -+.+..-+  . 
T Consensus        99 ~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~-  174 (339)
T PF12074_consen   99 KFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A-  174 (339)
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence            3333 267777777743    222211   11111111111111100000        000  000  01122221  2 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCC
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~  260 (383)
                      +++-....++++..+..+.+.....-........++-++-++  ...+|+.|..++..+....
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~  237 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN  237 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence            445566667777666554322221111223455677777776  8999999999999988764

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.67  E-value=15  Score=29.51  Aligned_cols=66  Identities=23%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             hHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccC
Q 037142           61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        61 i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~  131 (383)
                      ++.++++. -+++..++..|+.++..+.+..-..    -...+|.++.+..++++.++..|...+..+.+.
T Consensus        10 l~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvn----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK   75 (187)
T PF12830_consen   10 LKNILELC-LSSDDSVRLAALQVLELILRQGLVN----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEK   75 (187)
T ss_pred             HHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCC----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence            55667766 5778999999999999988765111    134899999999999999999999999999876

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=86.21  E-value=28  Score=32.25  Aligned_cols=277  Identities=11%  Similarity=0.088  Sum_probs=126.1

Q ss_pred             hHHHHHhhCC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC---
Q 037142           19 VPIFVKLLAS----PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK---   91 (383)
Q Consensus        19 i~~L~~lL~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~---   91 (383)
                      +..|...+..    +++.+-....+++..+-.+-......++.. .+..+....++..|+..-+....+++.+.+..   
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            3444444433    344455555555554444333333333322 23333333334447777776666666665443   


Q ss_pred             -CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           92 -PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        92 -~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                       +.....+...++|.+...|+.+-.+..-++...++.+.+....+.....+.. +++.++.----+...-.-...+.|..
T Consensus       107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~-L~~~Ll~p~lWe~~gniPalvrLL~a  185 (435)
T PF03378_consen  107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQ-LFPPLLSPALWERRGNIPALVRLLQA  185 (435)
T ss_dssp             GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGG-GHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHH-HHHHHcCcchhccCCCcCcHHHHHHH
Confidence             2222345678899999999988778888888888877765121122211111 23332211100111222445556666


Q ss_pred             hhcCCCccccceecCC----ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH-HHHHHHhcCChHHHHHHhh-cCchh
Q 037142          171 IARGDYSQTLYIINCG----ALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE-QIQAVIDAGLIGPLVNLLQ-NAVFY  244 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~----~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~-~~~~~  244 (383)
                      +....+..   +...+    ++..+-+++.+. .  .-..+...|..+...-+. ..+..+ ..++..+..-++ +...+
T Consensus       186 ~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~k  258 (435)
T PF03378_consen  186 YIKKDPSF---IVANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEK  258 (435)
T ss_dssp             HHHHHGGG-------S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HH
T ss_pred             HHHhCchh---hcchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHH
Confidence            65444432   23233    334444555555 2  224566777776654332 222221 123333444444 34566


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHH---cCChHHHHhhc-----C-CCCHHHHHHHHHHHHHHHHhch
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLER---EGCIKPLCDLL-----L-CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~---~~~i~~L~~ll-----~-~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      .++.-+..++.++...+++..-..++   .|+...++.-+     + -..+.-++.+.-++.+++..++
T Consensus       259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~  327 (435)
T PF03378_consen  259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP  327 (435)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence            66666666666655434454444444   24444444421     1 1223335566667777775443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=86.01  E-value=6  Score=30.04  Aligned_cols=74  Identities=9%  Similarity=-0.005  Sum_probs=58.3

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHH---HHHHHHHHHHHHHHhc
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQ---IVTVCLKALENILKVG  303 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---v~~~al~~l~~l~~~~  303 (383)
                      ++..|..-+.++++.++..|..++-.+..+++......+.+..++..|..++..+ ...   |+..++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            3556777788899999999999999999988777777777778899999987754 322   8888888887776654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=85.91  E-value=16  Score=29.27  Aligned_cols=107  Identities=14%  Similarity=0.046  Sum_probs=67.5

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      ++.++++.-+++..++..|+..+..+....--.     -...+|.++.+. .++++.++..|...+..+.+..+..-...
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            456677777899999999999998877432100     013478888888 78999999999999999988764332222


Q ss_pred             hhchhHHHHHhhc----cCCHHH---HHHHHHHHHHhccC
Q 037142           99 VRPCLPTLAQLVH----SNDEHV---MSNACWGLSLLCDG  131 (383)
Q Consensus        99 ~~~~i~~l~~ll~----~~~~~~---~~~~~~~l~~l~~~  131 (383)
                      ...++..-..+-.    +.....   ....+..++.+...
T Consensus        84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~  123 (187)
T PF12830_consen   84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS  123 (187)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc
Confidence            3334444333322    111111   45555666666654

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.89  E-value=2.4  Score=32.17  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHH---HHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYE---IHEKSA  348 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~---v~~~a~  348 (383)
                      ++..|..-+.++++.++..|+..+..++..++.            .+...+....+++.|..+.. .+...   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            466777778889999999999999999987653            35666767778888888755 34444   899999


Q ss_pred             HHHHHhcCCCCCCC
Q 037142          349 KILETYWCGRVVGP  362 (383)
Q Consensus       349 ~~l~~~~~~~~~~~  362 (383)
                      .++..+-......|
T Consensus       111 ~ll~~W~~~f~~~~  124 (140)
T PF00790_consen  111 ELLQEWAEAFKSDP  124 (140)
T ss_dssp             HHHHHHHHHTTTST
T ss_pred             HHHHHHHHHHCCCC
Confidence            99988766654433

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=85.79  E-value=3.7  Score=36.33  Aligned_cols=94  Identities=6%  Similarity=-0.007  Sum_probs=70.6

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhccc
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKN  308 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~  308 (383)
                      ++..++.-+.+.++.|...|...+..+..+|.......+.+.++...|..++. ...+.|+...-..+........++..
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~  125 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS  125 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence            46677888889999999999999999999998888889888999999999998 66888888776677666664444432


Q ss_pred             CcCCCCcccHHHHHHHHhc
Q 037142          309 TDTDIGDVNQYAQLVEEAK  327 (383)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~  327 (383)
                      .    +....+++.+.+.|
T Consensus       126 l----sLi~~l~~klk~~g  140 (462)
T KOG2199|consen  126 L----SLISALYKKLKEEG  140 (462)
T ss_pred             h----hHHHHHHHHHHHcC
Confidence            2    22334444454443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.42  E-value=54  Score=34.80  Aligned_cols=147  Identities=12%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142          186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI  265 (383)
Q Consensus       186 ~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  265 (383)
                      +++|.|..-|.+. +..+|..|...++.+......... --........+.-+.+.+..+|.+++....++..+. +...
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~  335 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA  335 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence            7788888888888 999999999999999865533222 001233444555556778999999999998887763 3333


Q ss_pred             HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 037142          266 KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHE  345 (383)
Q Consensus       266 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~  345 (383)
                      ...   +....+.....+.+..++..++-..+-...                 +...+..- .+..+-+.+.++-..|+.
T Consensus       336 ~~~---~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-----------------~~l~~~~~-ll~~~~eR~rDKk~~VR~  394 (1266)
T KOG1525|consen  336 KAS---TILLALRERDLDEDVRVRTQVVIVACDVMK-----------------FKLVYIPL-LLKLVAERLRDKKIKVRK  394 (1266)
T ss_pred             hHH---HHHHHHHhhcCChhhhheeeEEEEEeehhH-----------------hhhhhhHH-HHHHHHHHHhhhhHHHHH
Confidence            221   122233322222232332221111111110                 11112222 344555666777778888


Q ss_pred             HHHHHHHHhcC
Q 037142          346 KSAKILETYWC  356 (383)
Q Consensus       346 ~a~~~l~~~~~  356 (383)
                      .|..-+..+|.
T Consensus       395 ~Am~~LaqlYk  405 (1266)
T KOG1525|consen  395 QAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHHH
Confidence            88777776666

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=85.38  E-value=11  Score=29.97  Aligned_cols=81  Identities=9%  Similarity=0.005  Sum_probs=55.3

Q ss_pred             CcHHHHHHhcCCCChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHH
Q 037142          144 GVCPRLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI  222 (383)
Q Consensus       144 ~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~  222 (383)
                      ..+|.+++-|...+..-+..|...+..+... ..+..-.++ ..++..+-..|.+. ++++...++.+|..++..++..-
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence            3678888888887666677777777777655 222211111 24566677778888 99999999999999977665555


Q ss_pred             HHHH
Q 037142          223 QAVI  226 (383)
Q Consensus       223 ~~~~  226 (383)
                      +.+.
T Consensus       116 ~aLv  119 (183)
T PF10274_consen  116 EALV  119 (183)
T ss_pred             HHHH
Confidence            5544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=84.91  E-value=4.7  Score=40.24  Aligned_cols=130  Identities=15%  Similarity=0.168  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHH
Q 037142          158 QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNL  237 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l  237 (383)
                      +.++..+.-+|+++|-..+....     ..+|.+++-|.....-.+|.+.+-+++.+|....     ..-...+|.+...
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHH
Confidence            34567777888888865553222     3566677666554356667666666666664331     1224568888999


Q ss_pred             hhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          238 LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       238 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      |.++++-||+++...|.++...+   ..+. --.=++..+..++ +.+++++.-|-..+..++..
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~---~vKw-~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG---IVKW-NGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhh---hhhc-chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999997542   1111 1111233333333 55667777776777666654

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=84.86  E-value=1.2  Score=30.44  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             HhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHH
Q 037142           56 LGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS  126 (383)
Q Consensus        56 ~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~  126 (383)
                      .+..++.++..++.+..+.++++..+.++.++.......-......++..+.....+++.++...|..++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            34455788888876677899999999999999876532222223445555555555667777777766654

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=84.81  E-value=11  Score=28.73  Aligned_cols=74  Identities=14%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             hHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHhch
Q 037142          231 IGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP-LCDLLLC---PDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       231 l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +..|..-+. +.++.+...|...+-.++.+++......+.+.+++.. |+.++..   .+..|+..++..+........
T Consensus        40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~  118 (141)
T cd03565          40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR  118 (141)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence            334444455 4578888999999999999998888888888899997 9999863   245888888888887776543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=83.56  E-value=22  Score=32.92  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             HHHHHHhcC---CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCC---Cc
Q 037142           62 IPLLTQLNN---HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGG---KN  134 (383)
Q Consensus        62 ~~L~~~L~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~---~~  134 (383)
                      ..|+..+..   .+|+-+.+..++++..+-..-..........++..+....+++ ++..-.+...+++.+.+..   ++
T Consensus        29 ~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~  108 (435)
T PF03378_consen   29 QNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADP  108 (435)
T ss_dssp             HHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGH
T ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCCh
Confidence            444555532   3466677777777666554421111222233444444444443 5666666666666555431   12


Q ss_pred             hHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142          135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus       135 ~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      +....+ +..++|.+...|..+-.+..-.+...|+.+.+..+
T Consensus       109 ~~v~~~-E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~  149 (435)
T PF03378_consen  109 EAVSQF-EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP  149 (435)
T ss_dssp             H---HH-HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            222233 44588999999998877888888888888875544

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.00  E-value=33  Score=36.10  Aligned_cols=100  Identities=15%  Similarity=0.092  Sum_probs=64.2

Q ss_pred             CCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CC---CChhHHHHHHHHHHhhcCCC-CCCChhhh
Q 037142           27 ASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NH---ENLSMKRIATWTLSNLCGGK-PRPIFDQV   99 (383)
Q Consensus        27 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~   99 (383)
                      ..+.-+++...+.++.++.....+.   ++ .| -+.+++.+.   ..   ....+.+.+..+|.-++.+. +..+...+
T Consensus       852 s~~~~evr~~sl~~l~silet~ge~---ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci  926 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGEH---LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI  926 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccchh---hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence            3466788888888888887533221   11 12 333444432   11   24567778888888888877 66677777


Q ss_pred             hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC
Q 037142          100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus       100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~  131 (383)
                      .+.++.+..+-. ..|..+--.|+..+++++..
T Consensus       927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDf  959 (1610)
T KOG1848|consen  927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF  959 (1610)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence            888888887776 44667777777777777644

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.84  E-value=7.4  Score=33.32  Aligned_cols=183  Identities=14%  Similarity=-0.029  Sum_probs=97.1

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh--chhHHHHHhhc----cCCHHHHHHHHHHHHHhccCCCch
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR--PCLPTLAQLVH----SNDEHVMSNACWGLSLLCDGGKND  135 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~i~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~  135 (383)
                      ..+.+.+.+.+ .+.+--++..+.-++.+.+........  ++...+..++.    +..+..+.-++++++|+..+  ..
T Consensus        66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~--~~  142 (268)
T PF08324_consen   66 ILLLKILLSWP-PESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH--PP  142 (268)
T ss_dssp             HHHHHHHCCS--CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS--CC
T ss_pred             HHHHHHHHhCC-CccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC--Cc
Confidence            44555553443 333556667666666654322211111  12344444443    34578888899999999987  33


Q ss_pred             HHHHHHHh-C--cHHHHHHhcCCC---ChhhHHHHHHHHhhhhcCCCccc-cceecCCChHHHHH-hhccccchhHHHHH
Q 037142          136 EIQAVIEA-G--VCPRLVKLLGHP---SQSVLTQALHTVGNIARGDYSQT-LYIINCGALPYLLG-LLIDNHKTSIKNYA  207 (383)
Q Consensus       136 ~~~~~~~~-~--~i~~l~~~L~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~l~~-ll~~~~~~~~~~~a  207 (383)
                      ....+..+ +  ++..+.......   +..++..+...+.|++...-... ..-.....+..+.. +.....+++....+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            44444332 1  222333333332   78899999999999973211111 10111124556666 33332488999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHH
Q 037142          208 CWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKK  247 (383)
Q Consensus       208 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~  247 (383)
                      +.++|++...++.........++-..+...-. ...+.++.
T Consensus       223 LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~  263 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE  263 (268)
T ss_dssp             HHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence            99999999777554443323344433333332 23444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=82.83  E-value=6.4  Score=43.93  Aligned_cols=197  Identities=17%  Similarity=0.193  Sum_probs=111.8

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhh-hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQV-RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                      +.+..+...+ .++.-.++..+...+++++..+|....... ...+..+..+-.+...-+......-+..+... ....+
T Consensus       565 ~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~-~~~~i  642 (2341)
T KOG0891|consen  565 DLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS-SPVLI  642 (2341)
T ss_pred             hhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH-HHHHH
Confidence            3444455555 456667788888888888887652211111 12222222222233232222222222222222 22233


Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                      ....+ ..+..+...+.++++.+...+..+++.||...........+ ..++.+.+.+.+..+..-+..+.++++++.+.
T Consensus       643 ~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  643 SPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            33333 25567777788888889999999999999776655554555 56677777666553666778899999999864


Q ss_pred             CHHHHHHHH-hcCChHHHHHHhhcC-chhHHHHHHHHHHHhcCC
Q 037142          218 NREQIQAVI-DAGLIGPLVNLLQNA-VFYIKKEAAWAISNATFG  259 (383)
Q Consensus       218 ~~~~~~~~~-~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~  259 (383)
                      ..-...... ...++..+...+... ...+|.++...++++...
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            422111111 123344555555443 566777888887766554

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.73  E-value=57  Score=32.91  Aligned_cols=194  Identities=16%  Similarity=0.137  Sum_probs=109.4

Q ss_pred             hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC-----CCchHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhh
Q 037142          100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG-----GKNDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVGNI  171 (383)
Q Consensus       100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l  171 (383)
                      ...++.++.++. +.++.++..+...|+.+++.     .+++..+.+...+.+..|+..+-.+  ..+....++..+-.+
T Consensus       189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l  268 (838)
T KOG2073|consen  189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL  268 (838)
T ss_pred             HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence            678999999988 44688888888888888765     3666677777777778777766552  223333333333222


Q ss_pred             hcCCCccccceecCC-ChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcC---ChHHHHHHhhcCchhHHH
Q 037142          172 ARGDYSQTLYIINCG-ALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAG---LIGPLVNLLQNAVFYIKK  247 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~-~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~v~~  247 (383)
                      .  ++ ... ..+.. ....+..=.... ++.+....++++..-.   .+..+.+.+..   .++.=...+..+=..-|.
T Consensus       269 l--~~-~r~-~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl  340 (838)
T KOG2073|consen  269 L--NP-RRD-TVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL  340 (838)
T ss_pred             c--Cc-ccc-cccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence            2  22 111 11110 111111122222 4556666666654432   23333333322   222223333334456788


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHH--HHHHHHHHHHHHHH
Q 037142          248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQ--IVTVCLKALENILK  301 (383)
Q Consensus       248 ~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~--v~~~al~~l~~l~~  301 (383)
                      ..+..++.+....+....+.+...+++..+++++..-...  +....-.+|.....
T Consensus       341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~  396 (838)
T KOG2073|consen  341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS  396 (838)
T ss_pred             HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence            8899999998887888888888888998888887654332  34444444444333

>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised

Probab=82.73  E-value=10  Score=29.01  Aligned_cols=127  Identities=9%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhh-cCCCCHHHHHHHH
Q 037142          217 GNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGG-THEQIKYLEREGCIKPLCDL-LLCPDPQIVTVCL  293 (383)
Q Consensus       217 ~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~al  293 (383)
                      ++++..+.+.+.+++..+.+++.. ....++.....+++-+..+. ++..+.++++++.+..++.. ++-.+.++...=+
T Consensus        14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI   93 (149)
T PF09758_consen   14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI   93 (149)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence            456778888899999999999987 57778888877777776554 34556777888888888775 5556778888877


Q ss_pred             HHHHHHHHhchhcccCcC-C--CCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142          294 KALENILKVGEAEKNTDT-D--IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILET  353 (383)
Q Consensus       294 ~~l~~l~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~  353 (383)
                      ..|..+.-....+...+. +  .+..|          ....=..+.+|++.-|+..+..++-+
T Consensus        94 sfLK~lSlkln~~tv~fffn~~~~~FP----------L~~~aikf~~h~d~Mvr~avR~i~Ln  146 (149)
T PF09758_consen   94 SFLKTLSLKLNKDTVQFFFNERNDSFP----------LYTEAIKFYNHPDSMVRTAVRTITLN  146 (149)
T ss_pred             HHHHHHHhhcCCCceeEeEecCCCCCC----------cHHHHHHhhcCcchHHHHHHHHHHHh
Confidence            888888776655443322 1  11112          12222367888998887777665543

They contain a highly conserved FPL motif.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.42  E-value=9.4  Score=27.73  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH------hcCCCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL------QRHDNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l------~~~~~~~v~~~  346 (383)
                      ++..|..-+.++++.++..|+..|..++..++..            +...+....+...+...      -...+..|+++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k  105 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK  105 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence            4666777777889999999999999999877643            55556555555554332      12357789999


Q ss_pred             HHHHHHHhc
Q 037142          347 SAKILETYW  355 (383)
Q Consensus       347 a~~~l~~~~  355 (383)
                      +..++..+.
T Consensus       106 ~~~l~~~w~  114 (115)
T cd00197         106 AIELVQLWA  114 (115)
T ss_pred             HHHHHHHHh
Confidence            999887653

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.13  E-value=12  Score=29.69  Aligned_cols=75  Identities=21%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      -.+|.+++=+...+...+--|...+..+...+..+.+-.++. .++.+|-..|.+.++++...++.+|..++...+
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            356666666666666666666666666655522333333232 388899999999999999999999999966544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=82.10  E-value=25  Score=30.67  Aligned_cols=126  Identities=13%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             HHHHHhCCChHHHHHhhCC-----CCh------------------HHHHHHHHHHHHHhcCChHHHH-------------
Q 037142           10 KKAVVDHGAVPIFVKLLAS-----PSD------------------DIRMQSVWALGNIAAESPRFRD-------------   53 (383)
Q Consensus        10 ~~~~~~~g~i~~L~~lL~~-----~~~------------------~i~~~a~~~L~~l~~~~~~~~~-------------   53 (383)
                      ++.+.+.|.+|.|-++++.     +.+                  .++.+-++.+.+++..++....             
T Consensus         2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~   81 (303)
T PF12463_consen    2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE   81 (303)
T ss_pred             hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence            4678899999999988754     111                  3788999999999973321111             


Q ss_pred             --------HHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCCC-CCh--hhhhchhHHHHHhhccC---CHHHH
Q 037142           54 --------LVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKPR-PIF--DQVRPCLPTLAQLVHSN---DEHVM  118 (383)
Q Consensus        54 --------~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~-~~~--~~~~~~i~~l~~ll~~~---~~~~~  118 (383)
                              .--+.|.+..+++.+.+.+ +...+-..+.++-.+.+..+. ..+  ....|+++.++..+-++   +.++.
T Consensus        82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~  161 (303)
T PF12463_consen   82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL  161 (303)
T ss_pred             ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence                    1113467777777775544 667777888888888887644 333  33488999988877644   35688


Q ss_pred             HHHHHHHHHhccCCCchH
Q 037142          119 SNACWGLSLLCDGGKNDE  136 (383)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~  136 (383)
                      ....-.|+.+.++ +.+.
T Consensus       162 Q~~FDLLGELiK~-n~~~  178 (303)
T PF12463_consen  162 QSNFDLLGELIKF-NRDA  178 (303)
T ss_pred             HHHHHHHHHHHCC-CHHH
Confidence            8888899999988 5433

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=82.00  E-value=23  Score=34.04  Aligned_cols=172  Identities=10%  Similarity=-0.014  Sum_probs=82.1

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHH---hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhc---hh
Q 037142           30 SDDIRMQSVWALGNIAAESPRFRDLVL---GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP---CL  103 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~i  103 (383)
                      .++++.-|+.+|..+..+.+.....+.   ....+..++..++  .++..+-.++++|.|+..+...+ ..+...   ++
T Consensus       557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~-~~~~s~~~~i~  633 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGR-ELFMSRLESIL  633 (745)
T ss_pred             CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHH-HHHHHHHHHHh
Confidence            355666777777776655433333222   1234445555552  45667788899999999884222 222222   22


Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc----CC-CChhhHHHHHHHHhhhhcCCCcc
Q 037142          104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL----GH-PSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L----~~-~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..+...-..++..++........|.+.-    .++.-.+.+..+.+...+    .. +|-+.....+.+|++|+..++..
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~----l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~  709 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVL----LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV  709 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHH----HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence            2222222233344444433333333311    001111123333333333    22 34456677888889998766543


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHH
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACW  209 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~  209 (383)
                      .+ +.+.--++.+..-++...+....+..++
T Consensus       710 ~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~  739 (745)
T KOG0301|consen  710 IQ-LAKNRSVDSIAKKLKEAVSNPSGKNIAR  739 (745)
T ss_pred             HH-HHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence            33 4443345555555543323333333333

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.95  E-value=18  Score=31.34  Aligned_cols=73  Identities=22%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc----C--------CCCHHHHHHHHHHHH
Q 037142          230 LIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL----L--------CPDPQIVTVCLKALE  297 (383)
Q Consensus       230 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll----~--------~~~~~v~~~al~~l~  297 (383)
                      ++|.++.++.+.++.+|..++.++..+........-..+.+.|..+.+.+.+    -        .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            6899999999999999999999999999875444423355667655544433    2        234467777888888


Q ss_pred             HHHHh
Q 037142          298 NILKV  302 (383)
Q Consensus       298 ~l~~~  302 (383)
                      .++..
T Consensus       200 ~L~~~  204 (282)
T PF10521_consen  200 SLLKT  204 (282)
T ss_pred             HHHHh
Confidence            88764

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=81.92  E-value=24  Score=31.60  Aligned_cols=139  Identities=17%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-------CHHHHHHHHHHHHHhccCCCch
Q 037142           63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-------DEHVMSNACWGLSLLCDGGKND  135 (383)
Q Consensus        63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-------~~~~~~~~~~~l~~l~~~~~~~  135 (383)
                      .+...+ .+.+...+..|   |..|..+.      ....++|.++.++.+.       +.......+..+..|..+ +.-
T Consensus       182 ~It~a~-~~~~~~~r~~a---L~sL~tD~------gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l  250 (343)
T cd08050         182 EITEAL-VGSNEEKRREA---LQSLRTDP------GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNL  250 (343)
T ss_pred             HHHHHH-hCCCHHHHHHH---HHHhccCC------CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCC
Confidence            344444 23444545544   44455543      2345777777777632       677888888999999987 444


Q ss_pred             HHHHHHHhCcHHHHHHhcCC----------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH-H
Q 037142          136 EIQAVIEAGVCPRLVKLLGH----------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI-K  204 (383)
Q Consensus       136 ~~~~~~~~~~i~~l~~~L~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~-~  204 (383)
                      ...... +.++|.++.++-.          ++..+|..|...+..++........ -+...++..+.+.+.++..+.. .
T Consensus       251 ~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~  328 (343)
T cd08050         251 HLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTH  328 (343)
T ss_pred             chHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchh
Confidence            433332 3378888887732          3468999999999999965543333 2334555566666655423322 4


Q ss_pred             HHHHHHHHHH
Q 037142          205 NYACWIISNI  214 (383)
Q Consensus       205 ~~a~~~l~nl  214 (383)
                      .-|+..|..+
T Consensus       329 YGAi~GL~~l  338 (343)
T cd08050         329 YGAIVGLSAL  338 (343)
T ss_pred             hHHHHHHHHh
Confidence            4455555544

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=81.77  E-value=14  Score=28.12  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=57.2

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH-HHHHhcC---CCHHHHHHH
Q 037142          273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IENLQRH---DNYEIHEKS  347 (383)
Q Consensus       273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~l~~~---~~~~v~~~a  347 (383)
                      .+..|..=+. ..++.++..|+..|..++..++..            +...+..-++++. |..++..   ....|+.++
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki  106 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV  106 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence            3455555455 468889999999999999877643            5666777788887 8888763   345899999


Q ss_pred             HHHHHHhcCCCCCCC
Q 037142          348 AKILETYWCGRVVGP  362 (383)
Q Consensus       348 ~~~l~~~~~~~~~~~  362 (383)
                      ..++..+...-..+|
T Consensus       107 l~li~~W~~~f~~~~  121 (141)
T cd03565         107 LALIQAWADAFRGSP  121 (141)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999998876654443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function

Probab=81.70  E-value=46  Score=31.12  Aligned_cols=196  Identities=16%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCC---------CchHHHHHHHhCcHHHHHHhcCC----CC----hhhH
Q 037142          100 RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGG---------KNDEIQAVIEAGVCPRLVKLLGH----PS----QSVL  161 (383)
Q Consensus       100 ~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~i~~l~~~L~~----~~----~~v~  161 (383)
                      ..+|..+.+++. ++...++.+++|.|+.+--..         -+....++-+..++...+.++-.    +.    +...
T Consensus        96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv  175 (589)
T PF11229_consen   96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV  175 (589)
T ss_pred             HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence            567788888887 557889999999998764220         12333444455566666666632    22    3344


Q ss_pred             HHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037142          162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA  241 (383)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~  241 (383)
                      ..++..+........     +--.+.-..+..++.-+..++++..++.....=+..+ .....++..=+.|.++.-+   
T Consensus       176 kvvl~~ia~vgeS~q-----yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sL---  246 (589)
T PF11229_consen  176 KVVLKPIATVGESYQ-----YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSL---  246 (589)
T ss_pred             HHHHHHhhhcCCCCC-----CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcchhhhh---
Confidence            444454443322111     1112333334444443446778887775544333333 3344444444444444333   


Q ss_pred             chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +...|+.-...+.-....-++++++.+.+.-.+..+-..-.-.+++++..++..|..-.+...
T Consensus       247 s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~  309 (589)
T PF11229_consen  247 SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS  309 (589)
T ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC
Confidence            445666666666666666567777877664333333333334567888888888877665444

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=81.67  E-value=39  Score=31.73  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             HHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHH-hcCC
Q 037142          262 HEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL-QRHD  339 (383)
Q Consensus       262 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~  339 (383)
                      ......+.+.++++.|+++|. ..+++++.+|...|+.++..+..........-+++++.+.+.....++.|.+. ++.+
T Consensus        52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~  131 (475)
T PF04499_consen   52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ  131 (475)
T ss_pred             HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence            455667778999999999997 34678899999998888876653322111133568899999999888888765 5322


Q ss_pred             CHHHHHHHHHHHHHhc
Q 037142          340 NYEIHEKSAKILETYW  355 (383)
Q Consensus       340 ~~~v~~~a~~~l~~~~  355 (383)
                      .......+..++..+.
T Consensus       132 ~~s~lvn~v~IlieLI  147 (475)
T PF04499_consen  132 GGSSLVNGVSILIELI  147 (475)
T ss_pred             CcchHHHHHHHHHHHH
Confidence            2333334444444443

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=81.46  E-value=24  Score=27.68  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCC-ChhhHHHHHHHHhhhh---
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHP-SQSVLTQALHTVGNIA---  172 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~-~~~v~~~a~~~L~~l~---  172 (383)
                      ........+.++++++++.-+..++..+...+.. . .+....-.. ..+..++..|+.+ ...+...++.++..+.   
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~-~~~e~l~~~~~-~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQ-CSWEILLSHGS-QWLRALLSILEKPDPPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH-hhHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4456677788899999988888888888888866 3 222212222 3677888888874 4566777888777776   


Q ss_pred             cCCCccccceecC---CChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142          173 RGDYSQTLYIINC---GALPYLLGLLIDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       173 ~~~~~~~~~l~~~---~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      .+.++..+.+.-.   +++..++.+++.   ......++.++..+....
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHH  145 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHC
Confidence            3344433333322   223333333332   356667777777766544

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=81.31  E-value=22  Score=32.11  Aligned_cols=155  Identities=17%  Similarity=0.060  Sum_probs=93.9

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc----------cCCHHHHHHHHHHHHHhccC
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH----------SNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~----------~~~~~~~~~~~~~l~~l~~~  131 (383)
                      ..++..|.+......+..++.++.-|+++.....-.......+.|+.+.+          ..+..+...+..||+|+..+
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            45777774444566677888888888887644444444556666666654          23468899999999999988


Q ss_pred             CCchHHHHHHHhCcHHHHHHhcCC----C-ChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhccc-------
Q 037142          132 GKNDEIQAVIEAGVCPRLVKLLGH----P-SQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLIDN-------  198 (383)
Q Consensus       132 ~~~~~~~~~~~~~~i~~l~~~L~~----~-~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~~~-------  198 (383)
                       +......+.+......+.+.+..    . -..+...-++.|.-+..- .+...+.+.+.++++.+..++.+.       
T Consensus       128 -Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  128 -SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             -cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence             66666666666555555555432    1 112333344444444322 233445455667777777776431       


Q ss_pred             -------cchhHHHHHHHHHHHHhcC
Q 037142          199 -------HKTSIKNYACWIISNITAG  217 (383)
Q Consensus       199 -------~~~~~~~~a~~~l~nl~~~  217 (383)
                             ++.....+++.++.|++..
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhheeec
Confidence                   1224455677777887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
4b8j_A	528	Rimp_alpha1a Length = 528		1e-132
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-132
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		2e-85
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		3e-85
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		2e-83
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		3e-06
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		3e-83
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		5e-06
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		6e-83
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		5e-06
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-82
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		4e-06
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-82
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		5e-06
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		2e-82
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		5e-06
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-82
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-06
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-75
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-07
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-75
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-07
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-75
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-07
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-75
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-07
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-75
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-07
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-75
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-07
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-75
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		9e-08
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		2e-75
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		9e-08
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-75
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-07
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-75
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-07
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		2e-75
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-07
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-75
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-07
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		2e-75
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-07
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-75
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-07
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-74
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		9e-08
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		2e-73
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		6e-07
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-35
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-26
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		8e-29
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-20
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-16
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		5e-05

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 274/355 (77%), Gaps = 3/355 (0%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL S SDD+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGA 203
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+Q RP LP LA+L+HSNDE V+++
Sbjct: 204 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTD 263
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD +QT 
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            II+  ALP LL LL  N K SIK  ACW ISNITAGN++QIQAVI+AG+IGPLVNLLQ 
Sbjct: 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382
Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+H+QIKYL  EGCIK           +IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442
Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGE +K      GDVN ++Q+++EA+GLEKIENLQ HDN EI+EK+ KILE YW
Sbjct: 443 KVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 274/355 (77%), Gaps = 3/355 (0%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E+ K V+DHGAVPIFVKLL S SDD+R Q+VWALGN+A +SP+ RDLVL   A
Sbjct: 106 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGA 165
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+PLL QLN H  LSM R ATWTLSN C GKP+P F+Q RP LP LA+L+HSNDE V+++
Sbjct: 166 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTD 225
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVIEAGVCPRLV+LL HPS SVL  AL TVGNI  GD +QT 
Sbjct: 226 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 284
Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            II+  ALP LL LL  N K SIK  ACW ISNITAGN++QIQAVI+AG+IGPLVNLLQ 
Sbjct: 285 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 344
Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
           A F IKKEAAWAISNAT GG+H+QIKYL  EGCIK           +IVTVCL+ LENIL
Sbjct: 345 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 404
Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           KVGE +K      GDVN ++Q+++EA+GLEKIENLQ HDN EI+EK+ KILE YW
Sbjct: 405 KVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/356 (50%), Positives = 229/356 (64%), Gaps = 5/356 (1%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS      + V+  GAVPIF++LL+S  +D++ Q+VWALGNIA +S   RD VL    
Sbjct: 91  NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNI 150
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLL   +    L+M R A W LSNLC GK P P F +V PCL  L+ L+  +D  V++
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  ND+IQAVI+AGVC RLV+LL H    V++ AL  VGNI  GD  QT
Sbjct: 211 DACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC AL   L  L+ + K SIK  ACW ISNITAGNR QIQ VIDA +   L+++LQ
Sbjct: 270 QVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GG+ EQIKYL   GCIK           +IV V L  LENI
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388
Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E   +     +N Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 389 LRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/356 (50%), Positives = 229/356 (64%), Gaps = 5/356 (1%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS      + V+  GAVPIF++LL+S  +D++ Q+VWALGNIA +S   RD VL    
Sbjct: 88  NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNI 147
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           L PLL   +    L+M R A W LSNLC GK P P F +V PCL  L+ L+  +D  V++
Sbjct: 148 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 207
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW LS L DG  ND+IQAVI+AGVC RLV+LL H    V++ AL  VGNI  GD  QT
Sbjct: 208 DACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 266
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+NC AL   L  L+ + K SIK  ACW ISNITAGNR QIQ VIDA +   L+++LQ
Sbjct: 267 QVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 325
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
            A F  +KEAAWAI+NAT GG+ EQIKYL   GCIK           +IV V L  LENI
Sbjct: 326 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 385
Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           L++GE E   +     +N Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 386 LRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 217 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 276 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP  L LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 335 QVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A +  KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 454 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 186 SVEVKEQAIWALGNVAGDST 205

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 129 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 188 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 246
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 247 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 305
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A +  KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 306 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 365
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 366 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 98  SVEVKEQAIWALGNVAGDST 117

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  304 bits (778), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/358 (48%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 129 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 188 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 246
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 247 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 305
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A +  KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 306 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 365
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NI+K+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 366 NIIKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 98  SVEVKEQAIWALGNVAGDST 117

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 70  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 130 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 189 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 247
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 248 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 306
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A    KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 307 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 366
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 367 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 99  SVEVKEQAIWALGNVAGDST 118

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 70  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 130 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 189 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 247
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 248 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 306
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A    KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 307 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 366
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 367 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 99  SVEVKEQAIWALGNVAGDST 118

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 131 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 190 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 248
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 249 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 307
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A    KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 308 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 367
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 368 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 100 SVEVKEQAIWALGNVAGDST 119

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  303 bits (775), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
           + P+L   N+++  S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + 
Sbjct: 131 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
           +ACW +S L DG + + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT
Sbjct: 190 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 248
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             +IN G LP L  LL+ + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 249 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 307
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
            A    KKEA WAISNA+ GG      I+YL  +GCIK           +I+ V L ALE
Sbjct: 308 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 367
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           NILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 368 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           +I  G +P L+  + +N    ++  A W ++NI +G   Q + V+DA  +   + LL   
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 242 VFYIKKEAAWAISNATFGGT 261
              +K++A WA+ N     T
Sbjct: 100 SVEVKEQAIWALGNVAGDST 119

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 66  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 113 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 172
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 173 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 232
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 233 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 291
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 292 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 350
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 410
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 411 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 463
Query: 356 C 356
Sbjct: 464 S 464

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 52  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 111
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 112 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 170
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 171 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 230
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 231 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 289
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 290 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 331

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 66  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 66  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 111 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 170
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 171 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 230
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 231 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 289
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 290 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 348
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 408
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 409 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 50  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 109
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 110 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 168
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 169 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 228
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 229 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 287
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 288 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 329

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 83  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 142
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 143 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 202
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 203 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 262 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 380
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 381 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 22  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 81
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 82  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 140
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 141 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 200
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 201 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 259
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 260 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 301

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 76  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 135
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 136 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 195
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 196 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 255 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 373
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 374 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 15  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 74
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 75  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 134 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 194 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 252
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 253 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 294

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 77  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 16  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 76  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 77  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 16  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 76  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 76  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 135
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 136 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 195
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 196 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 255 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 373
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 374 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 15  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 74
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 75  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 134 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 194 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 252
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 253 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 294

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 77  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 16  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 76  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 103 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 162
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 163 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 222
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 223 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 281
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 282 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 400
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 401 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 42  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 101
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 102 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 160
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 161 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 220
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 221 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 279
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 280 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 321

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  278 bits (712), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 72  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 131
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 132 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 191
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 192 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 251 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 369
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 370 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 11  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 70
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 71  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 130 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 190 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 248
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 249 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 290

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 72  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 131
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 132 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 191
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 192 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 251 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +KEAAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 369
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 370 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 11  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 70
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 71  TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 130 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 190 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 248
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 249 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 290

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/361 (44%), Positives = 215/361 (59%), Gaps = 14/361 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA     FRDLV+   A
Sbjct: 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA 205
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  ++     R  TWTLSNLC  K P P  D V   LPTL +L+H ND 
Sbjct: 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 265
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 266 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 325 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
            +L  A F  +K AAWAI+N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 443
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 444 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496
Query: 356 C 356
Sbjct: 497 S 497

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
           ++SN+      A      L    K   I  +I AG+ P+ V  LG    S +  ++   +
Sbjct: 85  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 144
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
            NIA G   QT  +++ GA+P  + LL   H   I   A W + NI          VI  
Sbjct: 145 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIKH 203
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
           G I PL+ LL        A  Y++                                    
Sbjct: 204 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
                 ++ WAIS  T  G +E+I+ + ++G +             IVT  L+A+ NI+ 
Sbjct: 264 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             + +     D G +  +  L+   K      N+Q+   + +   +A
Sbjct: 323 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 364

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 214/360 (59%), Gaps = 14/360 (3%)
Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A
Sbjct: 78  NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGA 137
Query: 61  LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
           + PLL  L   +  S+     R  TWTLSNLC  K P P  D V   LPTL +L+H +D 
Sbjct: 138 VDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDP 197
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            V+++ CW +S L DG  N+ I  V++ GV P+LVKLLG     ++T AL  +GNI  G 
Sbjct: 198 EVLADTCWAISYLTDG-PNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGT 256
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV
Sbjct: 257 DEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 315
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
           ++L  A F  +KEA WA++N T GGT EQI YL   G I+           +I+ V L A
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDA 375
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S  ++E Y+
Sbjct: 376 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYF 428

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
           II  G +P  +  L     + I+  + W ++NI +G  EQ +AV+D G I   ++LL + 
Sbjct: 47  IIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 106
Query: 242 VFYIKKEAAWAISNATFGGT 261
             +I ++A WA+ N    G+
Sbjct: 107 HAHISEQAVWALGNIAGDGS 126

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 137/251 (54%), Gaps = 18/251 (7%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
           LP + Q ++S+D     +A    S +L DG  N++IQAVI+AG  P LV+LL  P++ +L
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG--NEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
            +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQ
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXX 281
           IQAVIDAG +  LV LL +    I +EA WA+SN   GG +EQI+ +   G +       
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL 189
Query: 282 XXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNY 341
                QI+   L AL NI   G             N+  Q V+EA  LEK+E LQ H+N 
Sbjct: 190 SSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENE 236
Query: 342 EIHEKSAKILE 352
           +I +++ + LE
Sbjct: 237 KIQKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
           LP + Q ++S D+  + +A   LS +  GG N++IQAVI+AG  P LV+LL  P++ +L 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
           +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXX 282
           QAVIDAG +  LV LL +    I +EA WA+SN   GG +EQ + ++  G ++       
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 283 XXXXQIVTVCLKALENI 299
               +I     +ALE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 106/207 (51%), Gaps = 15/207 (7%)
Query: 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN 205
            P++V+ L  P Q  L  AL  +  IA G   Q   +I+ GALP L+ LL  +    I  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265
            A W +SNI +G  EQIQAVIDAG +  LV LL +    I +EA WA+SN   GG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 266 KYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325
           + +   G +            QI+   L AL NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 326 AKGLEKIENLQRHDNYEIHEKSAKILE 352
           A  LEK+E LQ H+N +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
           LP + Q ++S D+  + +A   LS +  GG N++IQAVI+AG  P LV+LL  P++ +L 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
           +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXX 282
           QAVIDAG +  LV LL +    I +EA WA+SN   GG +EQ + ++  G          
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGAEPALEQLQS 190
Query: 283 XXXXQIVTVCLKALENI 299
               +I     +ALE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
           LP + Q ++S+D     +A    S +L DG  N++IQAVI+AG  P LV+LL  P++ +L
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG--NEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
            +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQ
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXX 281
           IQAVIDAG +  LV LL +    I +EA WA+SN   GG +EQ + ++  G ++      
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ 189
Query: 282 XXXXXQIVTVCLKALENI 299
                +I     +ALE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN 205
            P++ + L          A      I      Q   +I+ GALP L+ LL  +    I  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265
            A W +SNI +G  EQIQAVIDAG +  LV LL +    I +EA WA+SN   GG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 266 KYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325
           + +   G +            QI+   L AL NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 326 AKGLEKIENLQRHDNYEIHEKSAKILE 352
           A  LEK+E LQ H+N +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 8/240 (3%)
Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC-LPTLAQLVHSNDEHVMS 119
           L+ LLT  ++      ++ A   L+ +  G    I   V    +  L +L+ S D  V  
Sbjct: 7   LVKLLTSTDSE----TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
            A   L+ +   G ++ I+A+++AG    LVKLL      V  +A   + NIA G     
Sbjct: 63  EAARALANIA-SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I++ G +  L+ LL     + ++  A   ++NI +G  E I+A++DAG +  LV LL 
Sbjct: 122 KAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
           +    ++KEAA A++N   G T   IK +   G ++           ++     +ALENI
Sbjct: 181 STDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 89  GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIEAGVCP 147
           GG P P + Q  P LP +  ++    + V SNA   L  LC   +ND+++  V +    P
Sbjct: 38  GGPPPPNWRQ--PELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIP 93
Query: 148 RLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLL 195
            LV LL HP + V   A   + NI+ G D    + I NC  +P L+ LL
Sbjct: 94  VLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-133
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-49
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-126
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-37
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-122
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-47
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-35
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-30
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-79
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-57
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-78
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-50
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-48
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-46
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-77
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-60
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-58
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-47
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-43
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-21
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-71
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-38
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-67
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-59
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-54
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-54
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-49
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-43
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-50
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-37
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-33
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-14
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-47
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-41
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-33
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-30
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-38
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-05
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-37
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-34
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-31
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	8e-05
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	5e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  388 bits (997), Expect = e-133
 Identities = 189/355 (53%), Positives = 236/355 (66%), Gaps = 5/355 (1%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS      + V+  GAVPIF++LL+S  +D++ Q+VWALGNIA +S   RD VL    L
Sbjct: 92  IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
            PLL   +    L+M R A W LSNLC GK P P F +V PCL  L+ L+  +D  V+++
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW LS L DG  ND+IQAVI+AGVC RLV+LL H    V++ AL  VGNI  GD  QT 
Sbjct: 212 ACWALSYLSDGP-NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            I+NC AL  LL LL  + K SIK  ACW ISNITAGNR QIQ VIDA +   L+++LQ 
Sbjct: 271 VILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           A F  +KEAAWAI+NAT GG+ EQIKYL   GCIKPLCDLL   D +IV V L  LENIL
Sbjct: 330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           ++GE E     +   +N Y  L+EEA GL+KIE LQ H+N EI++K+  ++E Y+
Sbjct: 390 RLGEQEAK--RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  170 bits (433), Expect = 4e-49
 Identities = 66/357 (18%), Positives = 137/357 (38%), Gaps = 22/357 (6%)

Query: 1   SIASKTLEDKKAVV--DHGAVPIFVKLLASPSDDIRMQSVWALGNIA--AESPRFRDLVL 56
           ++     +     +          ++++ S S + ++ +      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 57  GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDE 115
               +   +  L   EN +++  + W L+N+  G        ++   +P   +L+ S  E
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARG 174
            V   A W L  +           V++  + P L++L    ++ ++   A+  + N+ RG
Sbjct: 122 DVQEQAVWALGNIAGDSTMC-RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL 234
                 +      L  L  LL     T +   ACW +S ++ G  ++IQAVIDAG+   L
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

Query: 235 VNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLK 294
           V LL +  + +   A  A+ N    G   Q + +     ++ L  LL  P   I      
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 295 ALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
            + NI              G+  Q  Q V +A     + ++ +   +   +++A  +
Sbjct: 299 TISNITA------------GNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  373 bits (958), Expect = e-126
 Identities = 183/357 (51%), Positives = 240/357 (67%), Gaps = 8/357 (2%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A+
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
            P+L   N++   S+ R ATWTLSNLC G KP+P +  V   LPTLA+L++S D   + +
Sbjct: 218 EPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW +S L DG   + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT 
Sbjct: 277 ACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +IN G LP L  LL  + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+ 
Sbjct: 336 VVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394

Query: 241 AVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298
           A +  KKEA WAISNA+ GG    + I+YL  +GCIKPLCDLL   D +I+ V L ALEN
Sbjct: 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454

Query: 299 ILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           ILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 455 ILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  140 bits (354), Expect = 2e-37
 Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 16/261 (6%)

Query: 92  PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK 151
            +  + Q++  LP + Q ++S+D     +A      +        I  VI+AGV PRLV+
Sbjct: 78  DQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 137

Query: 152 LLGHPSQSVL-TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWI 210
            +      +L  +A   + NIA G  +QT  +++  A+P  + LL       +K  A W 
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWA 196

Query: 211 ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER 270
           + N+   + +    V+    + P++ L  +    + + A W +SN   G    Q  +   
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK-KPQPDWSVV 255

Query: 271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE 330
              +  L  L+   D + +     A+  +                  +  Q V + +  +
Sbjct: 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGP-------------QEAIQAVIDVRIPK 302

Query: 331 KIENLQRHDNYEIHEKSAKIL 351
           ++  L  H++  +   + + +
Sbjct: 303 RLVELLSHESTLVQTPALRAV 323

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  102 bits (256), Expect = 4e-24
 Identities = 39/219 (17%), Positives = 78/219 (35%), Gaps = 15/219 (6%)

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA-RGDYSQTLYIINCGALPYLL 192
            D+          P++ + L          A      I  R        +I  G +P L+
Sbjct: 77  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 136

Query: 193 GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA 252
             + +N    ++  A W ++NI +G   Q + V+DA  +   + LL      +K++A WA
Sbjct: 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196

Query: 253 ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTD 312
           + N   G + +   Y+ +   ++P+  L     P ++      L N+ +           
Sbjct: 197 LGNVA-GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR----------- 244

Query: 313 IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
            G   Q       ++ L  +  L    + E    +   +
Sbjct: 245 -GKKPQ-PDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  361 bits (928), Expect = e-122
 Identities = 165/359 (45%), Positives = 220/359 (61%), Gaps = 14/359 (3%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187

Query: 62  IPLLTQLNNHEN----LSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEH 116
            PLL  L   +         R  TWTLSNLC  K P P  D V   LPTL +L+H ND  
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247

Query: 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176
           V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G  
Sbjct: 248 VLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVN 236
            QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV 
Sbjct: 307 EQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
           +L  A F  +KEAAWAI+N T GGT EQI YL   G I+PL +LL   D +I+ V L A+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
            NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 426 SNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  165 bits (420), Expect = 9e-47
 Identities = 73/357 (20%), Positives = 128/357 (35%), Gaps = 23/357 (6%)

Query: 8   EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLT 66
                   + +V   VK + S + + ++Q+  A   + + E     D ++    +   ++
Sbjct: 48  IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 107

Query: 67  QLNNHENLSMKRIATWTLSNLCGGKPRPIFDQV-RPCLPTLAQLVHSNDEHVMSNACWGL 125
            L   +   ++  + W L+N+  G        V    +P    L+ S   H+   A W L
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167

Query: 126 SLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ-----SVLTQALHTVGNIARGDYSQTL 180
             +  G  +     VI+ G    L+ LL  P         L     T+ N+ R       
Sbjct: 168 GNIA-GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 226

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
                  LP L+ LL  ++   +   +CW IS +T G  E+I+ V+  G++  LV LL  
Sbjct: 227 LDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
               I   A  AI N    GT EQ + +   G +     LL  P   I       + NI 
Sbjct: 286 TELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI- 343

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357
                               Q V     +  +  +    +++  +++A  +  Y  G
Sbjct: 344 ------------TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  133 bits (337), Expect = 5e-35
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 9/234 (3%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           +     E  + VV  G VP  VKLL +    I   ++ A+GNI   +      V+ +A  
Sbjct: 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGA 317

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI-FDQVRPCLPTLAQLVHSNDEHVMSN 120
           + +   L  +   ++++ ATWT+SN+  G+   I        +P L  ++   D      
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR------G 174
           A W ++    GG  ++I  ++  G+   L+ LL      ++   L  + NI +       
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437

Query: 175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
               ++ I  CG L  +  L   +   S+   +  +I    +   E+ Q V+  
Sbjct: 438 TEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFSVEEEEDQNVVPE 490

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  120 bits (301), Expect = 3e-30
 Identities = 53/286 (18%), Positives = 92/286 (32%), Gaps = 21/286 (7%)

Query: 72  ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDG 131
                         +            V   +  + + ++SN+      A      L   
Sbjct: 28  RQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 87

Query: 132 GKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY 190
            K   I  +I AG+ P+ V  LG      +  ++   + NIA G   QT  +++ GA+P 
Sbjct: 88  EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 147

Query: 191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE-- 248
            + LL   H   I   A W + NI          VI  G I PL+ LL            
Sbjct: 148 FISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 206

Query: 249 ---AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA 305
                W +SN      +        E  +  L  LL   DP+++     A+  +      
Sbjct: 207 LRNLTWTLSNLCR-NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD---- 261

Query: 306 EKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
                      N+  ++V +   + ++  L       I   + + +
Sbjct: 262 ---------GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  254 bits (650), Expect = 4e-79
 Identities = 53/363 (14%), Positives = 107/363 (29%), Gaps = 17/363 (4%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++       K AV   G +   V LL   +      +   L  +A  +   + ++L    
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
              L+  +  +    +    +  L  L               +  L   +    + ++ N
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
             W L  L D             G+   LV+LLG    +V+T A   + N+   +Y   +
Sbjct: 244 CLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299

Query: 181 YIINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVN 236
            +   G +  L+  ++    +  I   A   + ++T+ ++E      AV     +  +V 
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359

Query: 237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
           LL     +   +A   +              L  +G I  L  LL+              
Sbjct: 360 LLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 297 ENILKVGEAEKNTDTD--------IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
                V         +        +        ++     +     L       I   +A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478

Query: 349 KIL 351
            +L
Sbjct: 479 GVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  196 bits (499), Expect = 4e-57
 Identities = 59/346 (17%), Positives = 120/346 (34%), Gaps = 21/346 (6%)

Query: 8   EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67
               A +   A+P   KLL      +  ++   +  ++ +      ++     +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 68  LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL 127
           + N  ++   R    TL NL   +   +       +P L +++ S  + V+  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 128 LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA 187
           L    +     AV  AG   ++V LL   +   L      +  +A G+    L I+  G 
Sbjct: 125 LL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 188 LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKK 247
              L+ ++       +      ++  + +       A+++AG +  L   L +    + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307
              W + N +   T +       EG +  L  LL   D  +VT     L N+       K
Sbjct: 243 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 308 NTDTDIGDVNQYAQLVEEAKGLEKIENL--QRHDNYEIHEKSAKIL 351
                         +V +  G+E +     +  D  +I E +   L
Sbjct: 299 -------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  170 bits (433), Expect = 9e-48
 Identities = 57/351 (16%), Positives = 119/351 (33%), Gaps = 22/351 (6%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSD-DIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++ K       +     V   V+ + + +D +    +   L N+ +        +  ++ 
Sbjct: 41  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAI-FKSG 98

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMS 119
            IP L ++      S+   A  TL NL   +    +  ++   L  +  L++  +   ++
Sbjct: 99  GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
                L +L   G  +    ++ +G    LV ++   +   L      V  +     S  
Sbjct: 159 ITTDCLQILA-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
             I+  G +  L   L  +    +     W + N++    +Q       GL+G LV LL 
Sbjct: 218 PAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLG 273

Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKALE 297
           +    +   AA  +SN T     +    + + G I+ L   +L       I    + AL 
Sbjct: 274 SDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332

Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
           ++           +   +       V    GL  +  L    ++    K+ 
Sbjct: 333 HLT----------SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  147 bits (373), Expect = 2e-39
 Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 29/290 (10%)

Query: 8   EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLL-T 66
              K     G +   V+LL S   ++   +   L N+   + + + +V     +  L+ T
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313

Query: 67  QLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP----CLPTLAQLVHSNDEHVMSNAC 122
            L   +   +   A   L +L          Q        LP + +L+H      +  A 
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

Query: 123 WGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT--- 179
            GL              + E G  PRLV+LL    Q    +           +  +    
Sbjct: 374 VGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432

Query: 180 ------------------LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
                             + I     +P  + LL  +   +I+  A  ++  + A ++E 
Sbjct: 433 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCEL-AQDKEA 490

Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE 271
            +A+   G   PL  LL +    +   AA  +   +     +  K L  E
Sbjct: 491 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  111 bits (279), Expect = 6e-27
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 2/166 (1%)

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG 193
           N +  A +     P L KLL    Q V+ +A   V  +++ + S+   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 194 LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
            + + +           + N+ + +RE + A+  +G I  LV +L + V  +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            N        ++      G ++ +  LL   + + + +    L+ +
Sbjct: 123 HNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 69.6 bits (170), Expect = 5e-13
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            I ++ + ++  +     +P+FV+LL SP ++I+  +   L  +A       + +     
Sbjct: 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAI-EAEG 498

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
               LT+L +  N  +   A   L  +   KP+    ++   L   + L  +        
Sbjct: 499 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL--TSSLFRTEPMAWNET 556

Query: 121 ACWGLSLL 128
           A  GL + 
Sbjct: 557 ADLGLDIG 564

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  241 bits (616), Expect = 2e-78
 Identities = 99/250 (39%), Positives = 139/250 (55%), Gaps = 16/250 (6%)

Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
           LP + Q ++S+D     +A    S +   G N++IQAVI+AG  P LV+LL  P++ +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
           +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL 282
           QAVIDAG +  LV LL +    I +EA WA+SN   GG +EQI+ +   G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 283 CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYE 342
            P+ QI+   L AL NI   G              +  Q V+EA  LEK+E LQ H+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 343 IHEKSAKILE 352
           I +++ + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  170 bits (432), Expect = 5e-51
 Identities = 88/244 (36%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 58  EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLVHSNDE 115
             + +P +TQ  N +++  +  AT   S +       I   V     LP L QL+ S +E
Sbjct: 10  HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI-QAVIDAGALPALVQLLSSPNE 68

Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
            ++  A W LS +  G  N++IQAVI+AG  P LV+LL  P++ +L +AL  + NIA G 
Sbjct: 69  QILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
             Q   +I+ GALP L+ LL   ++  ++  A W +SNI +G  EQIQAVIDAG +  LV
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQE-ALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA 295
            LL +    I +EA WA+SN    G +EQ + ++  G ++ L  L    + +I     +A
Sbjct: 187 QLLSSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245

Query: 296 LENI 299
           LE +
Sbjct: 246 LEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  169 bits (429), Expect = 2e-50
 Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 4/240 (1%)

Query: 17  GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76
             +P   + L S     ++ +      I ++       V+ +A  +P L QL +  N  +
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQI 70

Query: 77  KRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND 135
            + A W LSN+  G    I   +    LP L QL+ S +E ++  A W LS +   G N+
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNE 129

Query: 136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL 195
           +IQAVI+AG  P LV+LL  P++ +L +AL  + NIA G   Q   +I+ GALP L+ LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 196 IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255
             +    I   A W +SNI +G  EQ QAV +AG +  L  L  +    I+KEA  A+  
Sbjct: 190 -SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  162 bits (412), Expect = 6e-48
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 3/172 (1%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS   E  +AV+D GA+P  V+LL+SP++ I  +++WAL NIA+        V+ +A  
Sbjct: 81  IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 139

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR-PCLPTLAQLVHSNDEHVMSN 120
           +P L QL +  N  + + A W LSN+  G    I   +    LP L QL+ S +E ++  
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
           A W LS +  GG N++ QAV EAG   +L +L  H ++ +  +A   +  + 
Sbjct: 200 ALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  157 bits (400), Expect = 4e-46
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           I S   E  +AV+D GA+P  V+LL+SP++ I  +++WAL NIA+        V+ +A  
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 97

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLVHSNDEHVMS 119
           +P L QL +  N  + + A W LSN+  G    I   V     LP L QL+ S +E ++ 
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSNIASGGNEQI-QAVIDAGALPALVQLLSSPNEQILQ 156

Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
            A W LS +   G N++IQAVI+AG  P LV+LL  P++ +L +AL  + NIA G   Q 
Sbjct: 157 EALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216
             +   GAL  L  L   +    I+  A   +  + +
Sbjct: 216 QAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 251

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  246 bits (629), Expect = 5e-77
 Identities = 53/362 (14%), Positives = 106/362 (29%), Gaps = 17/362 (4%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           +       K AV   G +   V LL   +      +   L  +A  +   + ++L     
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNA 121
             L+  +  +    +    +  L  L               +  L   +    + ++ N 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181
            W L  L D             G+   LV+LLG    +V+T A   + N+   +Y   + 
Sbjct: 248 LWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

Query: 182 IINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVNL 237
           +   G +  L+  ++    +  I   A   + ++T+ ++E      AV     +  +V L
Sbjct: 304 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363

Query: 238 LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297
           L     +   +A   +              L  +G I  L  LL+               
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422

Query: 298 NILKVGEAEKNTDTD--------IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK 349
               V         +        +        ++     +     L       I   +A 
Sbjct: 423 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 350 IL 351
           +L
Sbjct: 483 VL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  202 bits (516), Expect = 2e-60
 Identities = 59/346 (17%), Positives = 119/346 (34%), Gaps = 21/346 (6%)

Query: 8   EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67
               A +   A+P   KLL      +  ++   +  ++ +      ++     +  ++  
Sbjct: 8   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67

Query: 68  LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL 127
           + N  ++   R    TL NL   +   +       +P L +++ S  + V+  A   L  
Sbjct: 68  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127

Query: 128 LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA 187
           L    +     AV  AG   ++V LL   +   L      +  +A G+    L I+  G 
Sbjct: 128 LL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 188 LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKK 247
              L+ ++       +      ++  + +       A+++AG +  L   L +    + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307
              W + N     +    K    EG +  L  LL   D  +VT     L N+       K
Sbjct: 246 NCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 308 NTDTDIGDVNQYAQLVEEAKGLEKIENL--QRHDNYEIHEKSAKIL 351
                         +V +  G+E +     +  D  +I E +   L
Sbjct: 302 -------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  196 bits (500), Expect = 4e-58
 Identities = 70/352 (19%), Positives = 120/352 (34%), Gaps = 28/352 (7%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIP 63
           S   E   A+   G +P  VK+L SP D +   ++  L N+       +  V   A  + 
Sbjct: 88  SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR-LAGGLQ 146

Query: 64  LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLVHS-NDEHVMSN 120
            +  L N  N+    I T  L  L  G        +        L  ++ +   E ++  
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESK-LIILASGGPQALVNIMRTYTYEKLLWT 205

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
               L +L     N    A++EAG    L   L  PSQ ++   L T+ N++     Q  
Sbjct: 206 TSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-- 261

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
                G L  L+ LL  +   ++   A  I+SN+T  N +    V   G I  LV  +  
Sbjct: 262 -EGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319

Query: 241 A--VFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
           A     I + A  A+ + T            +     +  +  LL  P    +      L
Sbjct: 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
              L +  A                 + E   + ++  L    + +   +++
Sbjct: 380 IRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRRTS 418

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  166 bits (423), Expect = 5e-47
 Identities = 65/325 (20%), Positives = 112/325 (34%), Gaps = 33/325 (10%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            + S    +K A+V+ G +      L  PS  +    +W L N++  + +      G   
Sbjct: 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEG 266

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLV--HSNDEHV 117
           L+  L QL   +++++   A   LSNL     +      +   +  L + V    + E +
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 118 MSNACWGLSLLCDGGKNDE--IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
              A   L  L    +  E    AV      P +VKLL  PS   L +A   +       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN---------------------I 214
            +    +   GA+P L+ LL+  H    +       +                      I
Sbjct: 387 PANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 215 TAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCI 274
            A +      +     I   V LL + +  I++ AA  +         E  + +E EG  
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE--LAQDKEAAEAIEAEGAT 503

Query: 275 KPLCDLLLCPDPQIVTVCLKALENI 299
            PL +LL   +  + T     L  +
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  156 bits (397), Expect = 2e-43
 Identities = 61/352 (17%), Positives = 121/352 (34%), Gaps = 24/352 (6%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSD-DIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++ K       +     V   V+ + + +D +    +   L N++        +   ++ 
Sbjct: 44  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF--KSG 101

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLVHSNDEHVM 118
            IP L ++      S+   A  TL NL   +       VR    L  +  L++  +   +
Sbjct: 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFL 160

Query: 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178
           +     L +L   G  +    ++ +G    LV ++   +   L      V  +     S 
Sbjct: 161 AITTDCLQILA-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219

Query: 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238
              I+  G +  L   L D  +  ++N   W + N++    +Q       GL+G LV LL
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQN-CLWTLRNLSDAATKQEGM---EGLLGTLVQLL 275

Query: 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKAL 296
            +    +   AA  +SN T     +    + + G I+ L   +L       I    + AL
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
            ++           +   +       V    GL  +  L    ++    K+ 
Sbjct: 335 RHLT----------SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  108 bits (272), Expect = 4e-26
 Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 2/166 (1%)

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG 193
           N +  A +     P L KLL    Q V+ +A   V  +++ + S+   + +   +  ++ 
Sbjct: 7   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 194 LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
            + + +           + N+ + +RE + A+  +G I  LV +L + V  +   A   +
Sbjct: 67  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
            N            +   G ++ +  LL   + + + +    L+ +
Sbjct: 126 HNLL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 93.3 bits (232), Expect = 7e-21
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 24/206 (11%)

Query: 10  KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN 69
           + AV  H  +P+ VKLL  PS    +++   L    A  P      L E   IP L QL 
Sbjct: 348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP-LREQGAIPRLVQLL 406

Query: 70  NHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLC 129
              +   +R  +   +                       +     E ++      L +L 
Sbjct: 407 VRAHQDTQRRTSMGGTQQ-------------------QFVEGVRMEEIVEGCTGALHILA 447

Query: 130 DGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189
               N     +      P  V+LL  P +++   A   +  +A  D      I   GA  
Sbjct: 448 RDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATA 504

Query: 190 YLLGLLIDNHKTSIKNYACWIISNIT 215
            L  LL   ++  +  YA  ++  ++
Sbjct: 505 PLTELLHSRNEG-VATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 8   EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIA 45
           E  +A+   GA     +LL S ++ +   +   L  ++
Sbjct: 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  219 bits (561), Expect = 8e-71
 Identities = 79/198 (39%), Positives = 115/198 (58%), Gaps = 3/198 (1%)

Query: 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
            LP + Q ++S D+  + +A   LS +  GG N++IQAVI+AG  P LV+LL  P++ +L
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
            +AL  + NIA G   Q   +I+ GALP L+ LL  +    I   A W +SNI +G  EQ
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130

Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL 281
           IQAVIDAG +  LV LL +    I +EA WA+SN   GG +EQ + ++  G ++ L  L 
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ 189

Query: 282 LCPDPQIVTVCLKALENI 299
              + +I     +ALE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  188 bits (480), Expect = 1e-58
 Identities = 80/217 (36%), Positives = 109/217 (50%), Gaps = 15/217 (6%)

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197
                    P++V+ L  P Q  L  AL  +  IA G   Q   +I+ GALP L+ LL  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-S 64

Query: 198 NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257
           +    I   A W +SNI +G  EQIQAVIDAG +  LV LL +    I +EA WA+SN  
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVN 317
             G +EQI+ +   G +  L  LL  P+ QI+   L AL NI   G              
Sbjct: 125 -SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 318 QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY 354
           +  Q V+EA  LEK+E LQ H+N +I +++ + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  135 bits (341), Expect = 4e-38
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 3/172 (1%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS   E  +AV+D GA+P  V+LL+SP++ I  +++WAL NIA+        V+ +A  
Sbjct: 39  IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 97

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
           +P L QL +  N  + + A W LSN+  G    I   +    LP L QL+ S +E ++  
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
           A W LS +  GG N++ QAV EAG   +L +L  H ++ +  +A   +  + 
Sbjct: 158 ALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.5 bits (176), Expect = 9e-15
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +IAS   E  +AV+D GA+P  V+LL+SP++ I  +++WAL NIA+     +  V  EA 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK-EAG 180

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC 88
            +  L QL +HEN  +++ A   L  L 
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLC 278
           R           +  +V  L +      + A   +S     G +EQI+ +   G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH 338
            LL  P+ QI+   L AL NI              G   Q  Q V +A  L  +  L   
Sbjct: 61  QLLSSPNEQILQEALWALSNIA------------SGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 339 DNYEIHEKSAKIL 351
            N +I +++   L
Sbjct: 108 PNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAA 46
           IAS   E K+AV + GA+    +L +  ++ I+ ++  AL  + +
Sbjct: 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  226 bits (578), Expect = 1e-67
 Identities = 52/362 (14%), Positives = 106/362 (29%), Gaps = 17/362 (4%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           +       K AV   G +   V LL   +      +   L  +A  +   + ++L     
Sbjct: 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 320

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNA 121
             L+  +  +    +    +  L  L               +  L   +    + ++ N 
Sbjct: 321 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181
            W L  L D             G+   LV+LLG    +V+T A   + N+   +Y   + 
Sbjct: 381 LWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436

Query: 182 IINCGALPYLLGLLIDNH-KTSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVNL 237
           +   G +  L+  ++    +  I   A   + ++T+ +++      AV     +  +V L
Sbjct: 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496

Query: 238 LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297
           L     +   +A   +              L  +G I  L  LL+               
Sbjct: 497 LHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555

Query: 298 NILKVGEAEKNTDTD--------IGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK 349
               V         +        +        ++     +     L       I   +A 
Sbjct: 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615

Query: 350 IL 351
           +L
Sbjct: 616 VL 617

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  214 bits (545), Expect = 7e-63
 Identities = 59/343 (17%), Positives = 120/343 (34%), Gaps = 21/343 (6%)

Query: 11  KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN 70
            A +   A+P   KLL      +  ++   +  ++ +      ++     +  ++  + N
Sbjct: 144 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 203

Query: 71  HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD 130
             ++   R  + TL NL   +   +       +P L  ++ S  + V+ +A   L  L  
Sbjct: 204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL- 262

Query: 131 GGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY 190
             +     AV  AG   ++V LL   +   L      +  +A G+    L I+  G    
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 322

Query: 191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA 250
           L+ ++       +      ++  + +       A+++AG +  L   L +    + +   
Sbjct: 323 LVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381

Query: 251 WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTD 310
           W + N     +    K    EG +  L  LL   D  +VT     L N+       K   
Sbjct: 382 WTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK--- 434

Query: 311 TDIGDVNQYAQLVEEAKGLEKIENL--QRHDNYEIHEKSAKIL 351
                      +V +  G+E +     +  D  +I E +   L
Sbjct: 435 ----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  204 bits (520), Expect = 2e-59
 Identities = 69/351 (19%), Positives = 119/351 (33%), Gaps = 26/351 (7%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIP 63
           S   E   A+   G +P  V +L SP D +   ++  L N+       +  V   A  + 
Sbjct: 221 SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR-LAGGLQ 279

Query: 64  LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHS-NDEHVMSNA 121
            +  L N  N+    I T  L  L  G        +       L  ++ +   E ++   
Sbjct: 280 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181
              L +L     N    A++EAG    L   L  PSQ ++   L T+ N++      T  
Sbjct: 340 SRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQ 394

Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
               G L  L+ LL  +   ++   A  I+SN+T  N +    V   G I  LV  +  A
Sbjct: 395 EGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453

Query: 242 V--FYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE 297
                I + A  A+ + T            +     +  +  LL  P    +      L 
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513

Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
             L +  A                 + E   + ++  L    + +   +++
Sbjct: 514 RNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRRTS 551

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  190 bits (483), Expect = 3e-54
 Identities = 61/352 (17%), Positives = 117/352 (33%), Gaps = 24/352 (6%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSD-DIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++ K       +     V   V+ + + +D +    +   L N+ +        +  ++ 
Sbjct: 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIF-KSG 234

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLVHSNDEHVM 118
            IP L  +      S+   A  TL NL   +       VR    L  +  L++  +   +
Sbjct: 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFL 293

Query: 119 SNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ 178
           +     L +L   G  +    ++ +G    LV ++   +   L      V  +     S 
Sbjct: 294 AITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL 238
              I+  G +  L   L D     +     W + N++    +Q       GL+G LV LL
Sbjct: 353 KPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLL 408

Query: 239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL--CPDPQIVTVCLKAL 296
            +    +   AA  +SN T     +    + + G I+ L   +L       I    + AL
Sbjct: 409 GSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
            ++           +   D       V    GL  +  L    ++    K+ 
Sbjct: 468 RHLT----------SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  189 bits (481), Expect = 7e-54
 Identities = 61/379 (16%), Positives = 119/379 (31%), Gaps = 44/379 (11%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            +A    E K  ++  G     V ++ + + +  + +   +  + +     +  ++ EA 
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAG 360

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
            +  L       +  + +   WTL NL     +     +   L TL QL+ S+D +V++ 
Sbjct: 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTC 418

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL--GHPSQSVLTQALHTVGNIARGD--- 175
           A   LS L           V + G    LV+ +      + +   A+  + ++       
Sbjct: 419 AAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477

Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
                 +     LP ++ LL       +      +I N+ A        + + G I  LV
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLV 536

Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLE--------------------REGCIK 275
            LL  A    ++  +   +   F       + +E                        I 
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 276 PLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENL 335
               LL  P   I  V    L  + +  EA              A+ +E       +  L
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQDKEA--------------AEAIEAEGATAPLTEL 642

Query: 336 QRHDNYEIHEKSAKILETY 354
               N  +   +A +L   
Sbjct: 643 LHSRNEGVATYAAAVLFRM 661

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  177 bits (449), Expect = 1e-49
 Identities = 64/332 (19%), Positives = 113/332 (34%), Gaps = 33/332 (9%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            + S    +K A+V+ G +      L  PS  +    +W L N++  + +      G   
Sbjct: 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEG 399

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLV--HSNDEHV 117
           L+  L QL   +++++   A   LSNL     +      +   +  L + V    + E +
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459

Query: 118 MSNACWGLSLLCDGGKNDE--IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
              A   L  L    ++ E    AV      P +VKLL  PS   L +A   +       
Sbjct: 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519

Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN---------------------I 214
            +    +   GA+P L+ LL        +       +                      I
Sbjct: 520 PANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHI 578

Query: 215 TAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCI 274
            A +      +     I   V LL + +  I++ AA  +         E  + +E EG  
Sbjct: 579 LARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE--LAQDKEAAEAIEAEGAT 636

Query: 275 KPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306
            PL +LL   +  + T     L  + +    +
Sbjct: 637 APLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  159 bits (404), Expect = 2e-43
 Identities = 58/344 (16%), Positives = 117/344 (34%), Gaps = 26/344 (7%)

Query: 13  VVDHGAVPIFVKLLASPSDDIRMQS--VWALGNIAAESPRFRDLVLGEAALIPLLTQLNN 70
            +D G      +  ++   +++  +     L +       ++D        IP LT+L N
Sbjct: 101 TLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN 160

Query: 71  HENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTL-AQLVHSNDEHVMSNACWGLSLL 128
            E+  +   A   +  L   +         P  +  +   + ++ND          L  L
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220

Query: 129 CDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGAL 188
               +   + A+ ++G  P LV +LG P  SVL  A+ T+ N+        + +   G L
Sbjct: 221 SHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGL 278

Query: 189 PYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE 248
             ++ LL +             +  +  GN+E    ++ +G    LVN+++   +     
Sbjct: 279 QKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337

Query: 249 -AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307
             +  +   +          +   G ++ L   L  P  ++V  CL  L N+        
Sbjct: 338 TTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--- 392

Query: 308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
                        +       L  +  L   D+  +   +A IL
Sbjct: 393 -------------KQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  182 bits (464), Expect = 1e-54
 Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 22/282 (7%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSD-----------DIRMQSVWALGNIAAESPRFR 52
           S   E + A+ + G +    +LL    +            +R  +  AL N+       +
Sbjct: 60  SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119

Query: 53  DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLV 110
             +      +  L      E+  ++++    L NL           +R    +  L +  
Sbjct: 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179

Query: 111 -HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL-------T 162
                E  + +    L  L      ++       G    LV  L + SQ+          
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
             L  V ++   +      +     L  LL  L  +H  +I + AC  + N++A N +  
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 298

Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQ 264
           +A+ D G +  L NL+ +    I   +A A+ N       + 
Sbjct: 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  172 bits (437), Expect = 1e-50
 Identities = 54/320 (16%), Positives = 115/320 (35%), Gaps = 24/320 (7%)

Query: 10  KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL- 68
           +        +      + +P +     +V  L  ++ +    R  +  E   +  + +L 
Sbjct: 25  EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMN-ELGGLQAIAELL 82

Query: 69  ----------NNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEH 116
                     N+H +++++R A   L+NL  G    +     ++ C+  L   + S  E 
Sbjct: 83  QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142

Query: 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS-QSVLTQALHTVGNIA-RG 174
           +       L  L      +  + + E G    L++       +S L   L  + N++   
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202

Query: 175 DYSQTLYIINCGALPYLLGLLIDNHKTS---IKNYACWIISNIT---AGNREQIQAVIDA 228
             ++       GAL +L+G L    +T+   I      I+ N++   A N +  Q + + 
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262

Query: 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQI 288
             +  L+  L++    I   A   + N +     +  + L   G +  L +L+      I
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMI 321

Query: 289 VTVCLKALENILKVGEAEKN 308
                 AL N++    A+  
Sbjct: 322 AMGSAAALRNLMANRPAKYK 341

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  136 bits (343), Expect = 7e-37
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 13/240 (5%)

Query: 2   IASKTLEDKKAVV-DHGAVPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEA 59
           +    + +K  +    G +   V  L S S+D++      L N++       +  +    
Sbjct: 111 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 170

Query: 60  ALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLV----HSN 113
           ++  L+      +  S  +     L NL       +     V   L  L   +     +N
Sbjct: 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230

Query: 114 DEHVMSNACWGLSLLCDGGKNDE--IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171
              ++ +    L  +      +E   Q + E      L++ L   S ++++ A  T+ N+
Sbjct: 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290

Query: 172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN--REQIQAVIDAG 229
           +  +      + + GA+  L  L+   HK  I   +   + N+ A    + +   ++  G
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  126 bits (317), Expect = 3e-33
 Identities = 48/332 (14%), Positives = 92/332 (27%), Gaps = 34/332 (10%)

Query: 41  LGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL------------C 88
           L  I A      +        +                 A   L  L             
Sbjct: 13  LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 72

Query: 89  GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148
           GG    I + ++                +   A   L+ L  G   ++       G    
Sbjct: 73  GGLQ-AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131

Query: 149 LVKLLGHPSQSVLTQALHTVGNIARGDYSQT-LYIINCGALPYLLGLLIDNHKTSIKNYA 207
           LV  L   S+ +       + N++      +   +   G++  L+   ++  K S     
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 208 CWIISNITAGNRE-QIQAVIDAGLIGPLVNLL----QNAVFYIKKEAAWAISNATFG--G 260
              + N++A   E +       G +  LV  L    Q     I +     + N +     
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 261 THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA 320
             +  + L    C++ L   L      IV+     L N+     + +N            
Sbjct: 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-----SARNPK--------DQ 298

Query: 321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILE 352
           + + +   +  ++NL    +  I   SA  L 
Sbjct: 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 15/92 (16%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           S+ +   + ++ + ++  +   ++ L S S  I   +   L N++A +P+ ++ +  +  
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMG 305

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92
            + +L  L + ++  +   +   L NL   +P
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 14/149 (9%)

Query: 163 QALHTVGNI-ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
             LH +  I A  +        +   +      +    +  I   A  ++  + + + E 
Sbjct: 8   HMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP-AVCVLMKL-SFDEEH 65

Query: 222 IQAVIDAGLIGPLVNLLQNAVFY-----------IKKEAAWAISNATFGGTHEQIKYLER 270
             A+ + G +  +  LLQ                +++ A  A++N TFG    +      
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 271 EGCIKPLCDLLLCPDPQIVTVCLKALENI 299
           +GC++ L   L      +  V    L N+
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNL 154

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 13/156 (8%)

Query: 2   IASKTLEDKKAVV-DHGAVPIFVKLLASPSDD----IRMQSVWALGNI---AAESPRFRD 53
           +++   E+K  +    GA+   V  L   S      I       L N+    A +   R 
Sbjct: 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257

Query: 54  LVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVH 111
            +L E   +  L Q     +L++   A  TL NL    P  +     +   +  L  L+H
Sbjct: 258 -ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIH 315

Query: 112 SNDEHVMSNACWGLSLLCDGGKNDE-IQAVIEAGVC 146
           S  + +   +   L  L            ++  G  
Sbjct: 316 SKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  165 bits (419), Expect = 5e-47
 Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 22/269 (8%)

Query: 8   EDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVL 56
           E + A+ + G +    +LL              S  +R  +  AL N+       +  + 
Sbjct: 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239

Query: 57  GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC--LPTLAQLV-HSN 113
                +  L      E+  ++++    L NL           +R    +  L +      
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299

Query: 114 DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ-------ALH 166
            E  + +    L  L      ++       G    LV  L + SQ+            L 
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359

Query: 167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI 226
            V ++   +      +     L  LL  L  +H  +I + AC  + N++A N +  +A+ 
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 418

Query: 227 DAGLIGPLVNLLQNAVFYIKKEAAWAISN 255
           D G +  L NL+ +    I   +A A+ N
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  148 bits (376), Expect = 7e-41
 Identities = 53/311 (17%), Positives = 111/311 (35%), Gaps = 24/311 (7%)

Query: 10  KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL- 68
           +        +      + +P +     +V  L  ++      R  +  E   +  + +L 
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMN-ELGGLQAIAELL 198

Query: 69  ----------NNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEH 116
                     N+H +++++R A   L+NL  G    +     ++ C+  L   + S  E 
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS-QSVLTQALHTVGNIA-RG 174
           +       L  L      +  + + E G    L++       +S L   L  + N++   
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 175 DYSQTLYIINCGALPYLLGLLIDNHKTS---IKNYACWIISNIT---AGNREQIQAVIDA 228
             ++       GAL +L+G L    +T+   I      I+ N++   A N +  Q + + 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQI 288
             +  L+  L++    I   A   + N +     +  + L   G +  L +L+      I
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 289 VTVCLKALENI 299
                 AL N+
Sbjct: 438 AMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  127 bits (320), Expect = 5e-33
 Identities = 35/233 (15%), Positives = 82/233 (35%), Gaps = 11/233 (4%)

Query: 1   SIASKTLEDKKAVV-DHGAVPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGE 58
           ++    + +K  +    G +   V  L S S+D++      L N++       +  +   
Sbjct: 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285

Query: 59  AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLV----HS 112
            ++  L+      +  S  +     L NL       +     V   L  L   +     +
Sbjct: 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345

Query: 113 NDEHVMSNACWGLSLLCDGGKNDE--IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170
           N   ++ +    L  +      +E   Q + E      L++ L   S ++++ A  T+ N
Sbjct: 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405

Query: 171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ 223
           ++  +      + + GA+  L  L+  +    I   +   + N+ A    + +
Sbjct: 406 LSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  119 bits (299), Expect = 4e-30
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 61/378 (16%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLL------------ASPSDDIRMQSVWALGNIAAESPRF 51
           S + +   ++   G +P+ ++LL            +  S + R ++  AL NI    P  
Sbjct: 57  SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPD- 115

Query: 52  RDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH 111
                 E  ++ LL Q+  +          W              + +            
Sbjct: 116 DKRGRREIRVLHLLEQIRAYCE------TCWEWQEAHEPGMDQDKNPMP----------- 158

Query: 112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-----------GHPSQSV 160
           +  EH +  A   L  L    ++    A+ E G    + +LL            H S ++
Sbjct: 159 APVEHQICPAVCVLMKLSFDEEH--RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 161 LTQALHTVGNIARGD-YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219
              A   + N+  GD  ++       G +  L+  L  +    ++     ++ N++    
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRAD 275

Query: 220 EQIQAVI-DAGLIGPLVNLLQNA-VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPL 277
              +  + + G +  L+            K    A+ N +   T  +      +G +  L
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335

Query: 278 CDLLLCPDPQ----IVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE 333
              L          I+      L N+  +    ++    + + N    L++         
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ--------- 386

Query: 334 NLQRHDNYEIHEKSAKIL 351
              +  +  I   +   L
Sbjct: 387 -HLKSHSLTIVSNACGTL 403

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  143 bits (360), Expect = 1e-38
 Identities = 63/422 (14%), Positives = 112/422 (26%), Gaps = 70/422 (16%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
              +    K+ V   G +   V LL SP+ +++  +  AL N+   S   +     +  +
Sbjct: 29  TCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------- 110
              ++ L    N  +++  T  L NL         + +   LP LA  V           
Sbjct: 89  REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGN 147

Query: 111 -----HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL 165
                   D  V  NA   L  L              +G+   L+  + +   +      
Sbjct: 148 SNMSREVVDPEVFFNATGCLRNLSSADAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206

Query: 166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQA- 224
                +                    L     N  T   +  C+   +    N       
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266

Query: 225 ------------VIDAGLIGPLVNLLQNAVFYIKKEAA-WAISNATFG----GTHEQIKY 267
                       +  +  I   +NL+  +      EA   A+ N T       +      
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326

Query: 268 LEREGCIKPLCDLLLCPDPQIVTVCLKALENI---------------------LKVGEAE 306
             +E  +  +  LL   +  +V      L N+                     L      
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN 386

Query: 307 KNTDTDI------------GDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILET 353
            +   DI                Q A+    +  L  I NL R   + +  E +  +L  
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

Query: 354 YW 355
            W
Sbjct: 447 MW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 98.0 bits (243), Expect = 1e-22
 Identities = 43/365 (11%), Positives = 100/365 (27%), Gaps = 43/365 (11%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           +P  V+ L+S  +  +    + + +   +    +  V      I  L  L    N ++++
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG-ICKLVDLLRSPNQNVQQ 62

Query: 79  IATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
            A   L NL       +    +       ++ L  + +  +       L  L      DE
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS---TDE 119

Query: 137 IQAVIEAGVCPRLVKLLGHP----------------SQSVLTQALHTVGNIARGDYSQTL 180
           ++  + A   P L   +  P                   V   A   + N++  D  +  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            + N   L   L   + N   + +     + + +   +    +   +       +     
Sbjct: 180 -MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 241 AVFYIKKEAA-------------WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQ 287
             +  K                 +           +   +L     I+   +L+      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 288 IVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKS 347
                       L   +   ++            +  + KGL +I  L +  N ++    
Sbjct: 299 ATLEACAGALQNLTASKGLMSSG-------MSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351

Query: 348 AKILE 352
           A +L 
Sbjct: 352 ASLLS 356

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 8   EDKKAVVDHGAVPIFVKLLAS------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
                V+ +   P   +LL S       S+DI   + + + N+ A  P+        + L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKP 92
             ++    +  +      A   LS++   K 
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  141 bits (355), Expect = 3e-37
 Identities = 62/410 (15%), Positives = 129/410 (31%), Gaps = 65/410 (15%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIA-AESPRFRDLVLGEAA 60
           +  +  + K  V     +P+ V LL  P  ++ + +  AL NI+       +  +     
Sbjct: 75  LCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV---------- 110
           +  L+  L    ++ +  + T TL NL         + V   L  L   V          
Sbjct: 135 VPALVRLLRKARDMDLTEVITGTLWNLS-SHDSIKMEIVDHALHALTDEVIIPHSGWERE 193

Query: 111 --------HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH------- 155
                   H   E V++N    L  +         +     G+   L+ ++         
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253

Query: 156 ------------------------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYL 191
                                    ++     A +   N           +     +   
Sbjct: 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313

Query: 192 LGLLIDNHKTSIKNYACWIISNITAGNR---EQIQAVI-DAGLIGPLVNLLQNAVFYIKK 247
           + LL ++   +I   +   I N+ AG       I++ +     +  + +LL N    + K
Sbjct: 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVK 373

Query: 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307
            A+ A+ N        + K L  +  I  L   L        +    + + ++ +     
Sbjct: 374 AASGALRNLA---VDARNKELIGKHAIPNLVKNLPGGQQN--SSWNFSEDTVISILNTIN 428

Query: 308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYE--IHEKSAKILETYW 355
                I +  + A+ + E +G+EK+  + +  N        +A +L+T W
Sbjct: 429 EV---IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 74.6 bits (182), Expect = 1e-14
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 132 GKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYL 191
            K             P ++ +LG    +V + A   + ++   +      +     +P L
Sbjct: 36  RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL 95

Query: 192 LGLLIDNHKTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVF-YIKKEA 249
           +GLL D+ K  +   AC  + NI+ G +++   A+ +   +  LV LL+ A    + +  
Sbjct: 96  VGLL-DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVI 154

Query: 250 AWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP 286
              + N +   +H+ IK    +  +  L D ++ P  
Sbjct: 155 TGTLWNLS---SHDSIKMEIVDHALHALTDEVIIPHS 188

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 59.2 bits (142), Expect = 1e-09
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ 223
           +L ++ ++ +G             LP ++ +L      ++K+ A   + ++   N +   
Sbjct: 28  SLASLDSLRKG--GPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKT 84

Query: 224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC 283
            V     I  LV LL +    +   A  A+ N +FG   +    ++    +  L  LL  
Sbjct: 85  DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144

Query: 284 -PDPQIVTVCLKALENILKVGE 304
             D  +  V    L N+     
Sbjct: 145 ARDMDLTEVITGTLWNLSSHDS 166

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  127 bits (321), Expect = 2e-34
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 4/193 (2%)

Query: 17  GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76
           G   +  + L + +  +R ++   +G  +      ++ VLG  AL  LL  L+     ++
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 77  KRIATWTLSNLCGGKPRPIFDQVR-PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND 135
           +  A + +S L   +   +   +R      L + +    + +   + + L  L  G   +
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PE 200

Query: 136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL 195
               +   G+  +LV L+           L  + ++                   L  LL
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELL 258

Query: 196 IDNHKTSIKNYAC 208
               +   ++   
Sbjct: 259 RHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  119 bits (300), Expect = 2e-31
 Identities = 49/259 (18%), Positives = 99/259 (38%), Gaps = 14/259 (5%)

Query: 100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPS 157
           +P  PT  +   + D+     A   L+ LC+   N +  A      G+   + + L   +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCE---NMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 158 QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG 217
             +  +A   +G  ++   +    ++  GAL  LL LL  +   +++  A + IS +   
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPL 277
               +   +       L+  +Q  V  +K ++A+ + N   G   E    L   G ++ L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQL 214

Query: 278 CDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR 337
             L+           L AL +++           +        +L+       + + LQ+
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLR-----HRCQLLQQ 267

Query: 338 HDNY-EIHEKSAKILETYW 355
           H+ Y E  E   K+L+T +
Sbjct: 268 HEEYQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 1/130 (0%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            +  +        +      + ++ +      ++++S + L N+    P  +  +     
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC-SMG 209

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           ++  L  L   E+          L +L    P+ + +   P L     L H         
Sbjct: 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269

Query: 121 ACWGLSLLCD 130
                   C+
Sbjct: 270 EYQEELEFCE 279

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  122 bits (307), Expect = 1e-30
 Identities = 51/383 (13%), Positives = 112/383 (29%), Gaps = 59/383 (15%)

Query: 10  KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-------------------- 49
           +K + D  ++   + L    +       V    N+                         
Sbjct: 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIP 473

Query: 50  -----------RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98
                        R  VL    +   L  L   E+ + + +    L+ +CG        +
Sbjct: 474 EEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG------LKE 527

Query: 99  VRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE-IQAVIEAGVCPRLVK 151
           +R        +  L ++     E    +A   L+ +      +          V   L+ 
Sbjct: 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587

Query: 152 LLGHPSQSVLT-QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWI 210
           LL     ++   ++L  + N+A  + S    II    +  +   L+++H   +   A   
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQC 646

Query: 211 ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER 270
           + N+            +   +  L  L ++         A A++  T        K L  
Sbjct: 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706

Query: 271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE 330
              +  L  L+  P P +    +  + N++  GE             + A+ + E   +E
Sbjct: 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAGE-------------EIAKKLFETDIME 753

Query: 331 KIENLQRHDNYEIHEKSAKILET 353
            +  L +  +    +      + 
Sbjct: 754 LLSGLGQLPDDTRAKAREVATQC 776

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  114 bits (286), Expect = 7e-28
 Identities = 45/328 (13%), Positives = 92/328 (28%), Gaps = 50/328 (15%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIA--AESPRFRDLVLGEAAL 61
               E +  VV  G V   +++    ++  +  +  AL  I                  +
Sbjct: 523 CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNA 121
            PLL  L           +   L+NL                                  
Sbjct: 583 RPLLNLLQQDCTALENFESLMALTNLASMNE----------------------------- 613

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181
                           Q +I+     ++   L      +   A   + N+   +    ++
Sbjct: 614 -------------SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660

Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID-AGLIGPLVNLLQN 240
             N   + +L  L  ++            ++ IT+ + +  + ++  A  +  L  L+ N
Sbjct: 661 EGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719

Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD---PQIVTVCLKALE 297
               ++      I N       E  K L     ++ L  L   PD    +   V  + L 
Sbjct: 720 PSPAVQHRGIVIILN-MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778

Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEE 325
              +    E++ + +I DV      + E
Sbjct: 779 AAERYRIIERSDNAEIPDVFAENSKISE 806

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 83.4 bits (205), Expect = 2e-17
 Identities = 43/350 (12%), Positives = 103/350 (29%), Gaps = 66/350 (18%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIP 63
           +   ++ KA             L +P  + +++   A+  +        + V+    ++ 
Sbjct: 234 NMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQ 293

Query: 64  LLTQLNNHENLSMKRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEHVMSNA 121
           ++  +   ++   +R+A   L      K   + + +Q    +  L +L HS ++ +   A
Sbjct: 294 MILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ---GVDILKRLYHSKNDGIRVRA 350

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY 181
             GL  L   G  D        G   +L +                              
Sbjct: 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEAC---------------------------- 382

Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
                       L+       I+ +A   ++ +T     + + + D   I  L++L +  
Sbjct: 383 ---------RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG 433

Query: 242 VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK 301
                        N                        L    + Q +   +  L    K
Sbjct: 434 NQSCLYGVVTTFVN------------------------LCNAYEKQEMLPEMIELAKFAK 469

Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
               E++   D+  +N+   ++        +  L + +++   E  A++L
Sbjct: 470 QHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.9 bits (152), Expect = 7e-11
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 4/136 (2%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           ++       K    ++  V     L     ++       AL  I + S +  + +L  A+
Sbjct: 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS 708

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGG----KPRPIFDQVRPCLPTLAQLVHSNDEH 116
            + +L  L  + + +++      + N+         +     +   L  L QL       
Sbjct: 709 WLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAK 768

Query: 117 VMSNACWGLSLLCDGG 132
               A   L+      
Sbjct: 769 AREVATQCLAAAERYR 784

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 17/179 (9%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
              +  E +K V     +   ++LL   ++D++     AL N+  E    +  V     +
Sbjct: 37  ECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGV 96

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------- 110
             LL  L    +L  K+  T  L NL           +   L TL + +           
Sbjct: 97  PRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGD 155

Query: 111 -----HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164
                   D  +  N    L  +   G +         G+   LV  +           
Sbjct: 156 YPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD 214

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 84.6 bits (209), Expect = 3e-19
 Identities = 31/226 (13%), Positives = 71/226 (31%), Gaps = 29/226 (12%)

Query: 98  QVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPRLVKLLG 154
            +   L     ++ ++      +S A   +   C      E +  + +     +L++LL 
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ--KSEARKRVNQLRGILKLLQLLK 62

Query: 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI 214
             ++ V       + N+   D    L +     +P LL +L        K     ++ N+
Sbjct: 63  VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122

Query: 215 TAGNREQIQAVIDAGLIGPLVNLL----------------QNAVFYIKKEAAWAISNATF 258
           ++   ++++ ++    +  L   +                    F I       + N + 
Sbjct: 123 SSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 259 GGTHEQIKYLEREGCIKPLCDLL------LCPDPQIVTVCLKALEN 298
            G   +      +G I  L   +        PD +    C+  L N
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 78.1 bits (192), Expect = 7e-17
 Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 37/243 (15%)

Query: 19  VPIFVKLLASPSDDIRMQS--VWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76
           +   V +L +        S     + +   +    R  V      I  L QL   +N  +
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRG-ILKLLQLLKVQNEDV 68

Query: 77  KRIATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN 134
           +R     L NL       +    ++      L  L  + D          L  L     N
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS---SN 125

Query: 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194
           D+++ ++       L + +  P                             G        
Sbjct: 126 DKLKNLMITEALLTLTENIIIP---------------------------FSGWPEGDYPK 158

Query: 195 LIDNHKTSIKNYACWIISNITAGNREQIQAVIDA-GLIGPLVNLLQNAVFYIKKEAAWAI 253
                   I       + N+++   +  +A+    GLI  LV+ ++  +   + +   A 
Sbjct: 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDK-AT 217

Query: 254 SNA 256
            N 
Sbjct: 218 ENC 220

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 217 GNREQIQAVIDAGLIGPLVNLLQ--NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCI 274
           G+   ++  ++       V++L+  + +      AA  I +  F    E  K + +   I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54

Query: 275 KPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IE 333
             L  LL   +  +      AL N+       ++ D      N+    V E  G+ + ++
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNL-----VFEDND------NKLE--VAELNGVPRLLQ 101

Query: 334 NLQRHDNYEIHEKSAKIL 351
            L++  + E  ++   +L
Sbjct: 102 VLKQTRDLETKKQITGLL 119

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 27/244 (11%)

Query: 11  KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN 70
            A  D   +   ++LL      +   ++  +  IA          L E  L  L + L  
Sbjct: 26  MAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKK 80

Query: 71  HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD 130
            E + + +        +   KP      V+  +P L       DE    N  + L  +  
Sbjct: 81  SEAIPLTQEIAKAFGQMAKEKPE----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAK 136

Query: 131 GGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY 190
                 + +++        + +L   ++     AL+ +  +     +   Y+     LP 
Sbjct: 137 ANP-MLMASIVRD-----FMSMLSSKNREDKLTALNFIEAMGE---NSFKYVN--PFLPR 185

Query: 191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA 250
           ++ LL D  +  ++  A   + ++   N +  + VI        +  L +    + K   
Sbjct: 186 IINLLHDGDE-IVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVK 238

Query: 251 WAIS 254
             IS
Sbjct: 239 EGIS 242

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IA    +  + ++      +F  L  S +  +  +   A G +A E P          ++
Sbjct: 59  IAKTREDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK------SM 108

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNA 121
           IP+L       +   K   ++ L  +    P      +   +     ++ S +      A
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTA 164

Query: 122 CWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
              +  + +         +      PR++ LL    + V   A+  + ++A  +
Sbjct: 165 LNFIEAMGENSFKYVNPFL------PRIINLLHDGDEIVRASAVEALVHLATLN 212

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 61.6 bits (149), Expect = 4e-11
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 17  GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76
             +P+         +  ++   +AL  IA  +P     ++     + +L+  N  +    
Sbjct: 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV--RDFMSMLSSKNRED---- 160

Query: 77  KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
           K  A   +  +  G+       V P LP +  L+H  DE V ++A   L  L     ND+
Sbjct: 161 KLTALNFIEAM--GENSF--KYVNPFLPRIINLLHDGDEIVRASAVEALVHL--ATLNDK 214

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
           ++ V+      + ++ L   S  V       +  + 
Sbjct: 215 LRKVVI-----KRLEELNDTSSLVNKTVKEGISRLL 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 38/282 (13%), Positives = 80/282 (28%), Gaps = 57/282 (20%)

Query: 18  AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
                 +LL   +   R+ S   L               G    + L  +  + +N   +
Sbjct: 24  NDDELFRLLDDHNSLKRISSARVLQLR------------GGQDAVRLAIEFCSDKNYIRR 71

Query: 78  RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137
            I  + L  +     +   D V   L      ++     V + A           +  + 
Sbjct: 72  DIGAFILGQI--KICKKCEDNVFNIL--NNMALNDKSACVRATAIEST------AQRCKK 121

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197
             +    +  +        S +V       +  I                +P L+ LL D
Sbjct: 122 NPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-----------TIPLLINLLKD 170

Query: 198 NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257
            +   ++N+A + I+     N +              V +LQ+    ++ EA   +S   
Sbjct: 171 PNG-DVRNWAAFAININKYDNSDIRDC---------FVEMLQDKNEEVRIEAIIGLSY-- 218

Query: 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENI 299
                      + +  +  LCD L      +    ++A   +
Sbjct: 219 ----------RKDKRVLSVLCDEL--KKNTVYDDIIEAAGEL 248

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 58/284 (20%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
              AV + ++  +  +   R    + LG I             +     L     N ++ 
Sbjct: 52  GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSA 105

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN 134
            ++  A  + +     K  PI+      +            +V     + +S++ D    
Sbjct: 106 CVRATAIESTAQR--CKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVIND---- 157

Query: 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194
                       P L+ LL  P+  V   A   +      +                + +
Sbjct: 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEM 200

Query: 195 LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
           L D ++  ++  A   +S              D  ++  L + L+     +  +   A  
Sbjct: 201 LQDKNE-EVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAG 246

Query: 255 NATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALE 297
                        L  +  +  L  +L    D +I+T  +  L+
Sbjct: 247 E------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 23/193 (11%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 7   LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLT 66
           ++  K   D+    +    L   S  +R  ++ +      ++P      +    ++    
Sbjct: 81  IKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQ 134

Query: 67  QLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS 126
                ++ +++R   + +S +       I        P L  L+   +  V + A + ++
Sbjct: 135 ITAFDKSTNVRRATAFAISVI--NDKATI--------PLLINLLKDPNGDVRNWAAFAIN 184

Query: 127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG 186
           +            + +       V++L   ++ V  +A+  +      D           
Sbjct: 185 INKYDNS-----DIRDC-----FVEMLQDKNEEVRIEAIIGLSYR--KDKR--------- 223

Query: 187 ALPYLLGLLIDNH 199
            L  L   L  N 
Sbjct: 224 VLSVLCDELKKNT 236

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 29/268 (10%), Positives = 68/268 (25%), Gaps = 53/268 (19%)

Query: 32  DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK 91
             + ++    G               +      L +L +  N   +  +   L     G 
Sbjct: 5   YQKRKASKEYGLYNQC----------KKLNDDELFRLLDDHNSLKRISSARVLQLR--GG 52

Query: 92  PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK 151
              +            +     +        + L  +    K +      +         
Sbjct: 53  QDAV--------RLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNM 98

Query: 152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWII 211
            L   S  V   A+ +     + +   +        +        D   T+++    + I
Sbjct: 99  ALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS-TNVRRATAFAI 152

Query: 212 SNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE 271
           S I            D   I  L+NLL++    ++  AA+AI+   +             
Sbjct: 153 SVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------S 191

Query: 272 GCIKPLCDLLLCPDPQIVTVCLKALENI 299
                  ++L   + ++    +  L   
Sbjct: 192 DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 45/206 (21%)

Query: 7   LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLT 66
              K  +     V          S ++R  + +A+  I             + A IPLL 
Sbjct: 118 RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI------------NDKATIPLLI 165

Query: 67  QLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS 126
            L    N  ++  A + ++                      +++   +E V   A  GLS
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDNSDIR--------DCFVEMLQDKNEEVRIEAIIGLS 217

Query: 127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG 186
              D       + V+       L   L     +V    +   G +            +  
Sbjct: 218 YRKD-------KRVLSV-----LCDELKKN--TVYDDIIEAAGELG-----------DKT 252

Query: 187 ALPYLLGLLIDNHKTSIKNYACWIIS 212
            LP L  +L       I   A   + 
Sbjct: 253 LLPVLDTMLYKFDDNEIITSAIDKLK 278

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 57/236 (24%)

Query: 18  AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
            V +++K L   S  +R  + +ALG I            G+   +  L +    E+  ++
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKI------------GDERAVEPLIKALKDEDAWVR 62

Query: 78  RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137
           R A   L  +  G  R         +  L + +   D  V  +A   L      G+  + 
Sbjct: 63  RAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVAL------GQIGDE 106

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197
           +AV        L+K L      V   A   +G I               A+  L+  L D
Sbjct: 107 RAV------EPLIKALKDEDWFVRIAAAFALGEIGDER-----------AVEPLIKALKD 149

Query: 198 NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
                ++  A   +  I               +   +  L +    + +K A   +
Sbjct: 150 ED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 45/185 (24%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
           D  AV   +K L      +R  +  ALG I            G+   +  L +    E+ 
Sbjct: 43  DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKDEDG 90

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN 134
            +++ A   L  +  G  R         +  L + +   D  V   A + L  + D    
Sbjct: 91  WVRQSAAVALGQI--GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136

Query: 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194
              +  +E      L+K L      V   A   +G I                   +  L
Sbjct: 137 ---ERAVEP-----LIKALKDEDGWVRQSAADALGEIGGER-----------VRAAMEKL 177

Query: 195 LIDNH 199
                
Sbjct: 178 AETGT 182

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 36/265 (13%), Positives = 74/265 (27%), Gaps = 69/265 (26%)

Query: 35  MQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP 94
           M+      +              +   + +  +    ++  ++R A + L  +       
Sbjct: 1   MRGSHHHHHH------------TDPEKVEMYIKNLQDDSYYVRRAAAYALGKI------- 41

Query: 95  IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154
                   +  L + +   D  V   A   L  + D       +  +E      L+K L 
Sbjct: 42  ---GDERAVEPLIKALKDEDAWVRRAAADALGQIGD-------ERAVEP-----LIKALK 86

Query: 155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI 214
                V   A   +G I               A+  L+  L D     ++  A + +  I
Sbjct: 87  DEDGWVRQSAAVALGQIGDER-----------AVEPLIKALKDEDW-FVRIAAAFALGEI 134

Query: 215 TAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCI 274
                       D   + PL+  L++   ++++ AA A+              +  E   
Sbjct: 135 G-----------DERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVR 171

Query: 275 KPLCDLLLCPDPQIVTVCLKALENI 299
             +  L          V +  LE  
Sbjct: 172 AAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 22/114 (19%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
           D  AV   +K L      +R+ + +ALG I            G+   +  L +    E+ 
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKDEDG 152

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLL 128
            +++ A   L  + G                + +L  +        A   L   
Sbjct: 153 WVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 42/239 (17%), Positives = 75/239 (31%), Gaps = 57/239 (23%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
           D   V +++K L   S  +R  + +ALG I            G+   +  L +    E+ 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKI------------GDERAVEPLIKALKDEDA 64

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN 134
            ++R A   L  +  G  R         +  L + +   D  V  +A   L      G+ 
Sbjct: 65  WVRRAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVAL------GQI 108

Query: 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194
            + +AV        L+K L      V   A   +G I               A+  L+  
Sbjct: 109 GDERAV------EPLIKALKDEDWFVRIAAAFALGEIGDER-----------AVEPLIKA 151

Query: 195 LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
           L D     ++  A   +  I               +   +  L +    + +K A   +
Sbjct: 152 LKDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 60/258 (23%)

Query: 45  AAESPRFR---DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP 101
           A   P+F      +  +   + +  +    ++  ++R A + L  +              
Sbjct: 1   AWSHPQFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI----------GDER 50

Query: 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
            +  L + +   D  V   A   L  + D       +  +E      L+K L      V 
Sbjct: 51  AVEPLIKALKDEDAWVRRAAADALGQIGD-------ERAVEP-----LIKALKDEDGWVR 98

Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
             A   +G I               A+  L+  L D     ++  A + +  I       
Sbjct: 99  QSAAVALGQIGDER-----------AVEPLIKALKDEDW-FVRIAAAFALGEIG------ 140

Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL 281
                D   + PL+  L++   ++++ AA A+              +  E     +  L 
Sbjct: 141 -----DERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVRAAMEKLA 183

Query: 282 LCPDPQIVTVCLKALENI 299
                    V +  LE  
Sbjct: 184 ETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 35/207 (16%), Positives = 58/207 (28%), Gaps = 46/207 (22%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
           D  AV   +K L      +R  +  ALG I            G+   +  L +    E+ 
Sbjct: 48  DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKDEDG 95

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN 134
            +++ A   L  +  G  R         +  L + +   D  V   A + L  + D    
Sbjct: 96  WVRQSAAVALGQI--GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141

Query: 135 DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGL 194
              +AV        L+K L      V   A   +G I                   +  L
Sbjct: 142 --ERAV------EPLIKALKDEDGWVRQSAADALGEIGGER-----------VRAAMEKL 182

Query: 195 LIDNHKTSIKNYACWIISNITAGNREQ 221
                    +  A   +    + N   
Sbjct: 183 AETGTG-FARKVAVNYLETHKSFNHHH 208

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 56.7 bits (136), Expect = 6e-09
 Identities = 43/321 (13%), Positives = 99/321 (30%), Gaps = 39/321 (12%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           +     L      ++R     AL  +           +    ++  + Q    ++ ++  
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN--IVEYMLQRTQDQDENVAL 274

Query: 79  IATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN------------------------- 113
            A      L   +     D +   LP L  ++ +                          
Sbjct: 275 EACEFWLTLA--EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332

Query: 114 -DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
            D ++   +   L +L +  +++ +  ++     P L +LL H    V    +  +G IA
Sbjct: 333 SDWNLRKCSAAALDVLANVYRDELLPHIL-----PLLKELLFHHEWVVKESGILVLGAIA 387

Query: 173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG 232
            G     +  +    +P+L+  L D     +++  CW +S        Q        L+ 
Sbjct: 388 EGCMQGMIPYLP-ELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445

Query: 233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC 292
            L+  + ++   +++ A  A +        E + YL     +  L         + + + 
Sbjct: 446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLIL 503

Query: 293 LKALENILKVGEAEKNTDTDI 313
             A+  +        N    I
Sbjct: 504 YDAIGTLADSVGHHLNKPEYI 524

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 30/257 (11%), Positives = 72/257 (28%), Gaps = 23/257 (8%)

Query: 18  AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE--AALIPLLTQLNNHENLS 75
            +P  ++ L+     +R  + W L   A                 L+  L +     N  
Sbjct: 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHW---VVSQPPDTYLKPLMTELLKRILDSNKR 457

Query: 76  MKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND 135
           ++  A    + L       +   +   L TL           +      +  L D   + 
Sbjct: 458 VQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517

Query: 136 EIQAVIEAGVCPRLVKLLG--HPSQSVLTQALHTVGNIAR------GDYSQTLY------ 181
             +      + P L++           L   L  + ++A         Y + +Y      
Sbjct: 518 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNL 577

Query: 182 ---IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP-LVNL 237
               +    L        +         A  ++S +  G    I+ ++    I   +   
Sbjct: 578 VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC 637

Query: 238 LQNAVFYIKKEAAWAIS 254
           +Q+ +  +++ +   + 
Sbjct: 638 MQDKMPEVRQSSFALLG 654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 37/292 (12%), Positives = 95/292 (32%), Gaps = 25/292 (8%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           VP F  L+     ++R  +   +              +  + ++P + +L +  N  +K 
Sbjct: 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKS 342

Query: 79  IATWTLSNLCGGKPRPIFDQ---VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND 135
                +  L      PI  +   +   LP     +      V  N    +S L    +  
Sbjct: 343 ALASVIMGLS-----PILGKDNTIEHLLPLFLAQLKDECPEVRLNI---ISNLDCVNEVI 394

Query: 136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL 195
            I+ + ++ + P +V+L       V    +  +  +A     +             +  L
Sbjct: 395 GIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK---LNSLCMAWL 450

Query: 196 IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN 255
           +D H  +I+  A   +  +     ++        +I  ++ +  +  +  +    + I+ 
Sbjct: 451 VD-HVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 256 -ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE 306
            +   G     K++     +  +  +   P   +     K+L+ I  + +  
Sbjct: 507 LSEVCGQDITTKHM-----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 35/147 (23%)

Query: 18  AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
            +      +A  +  +R     AL  +            G+ A  PLL  L ++E+  ++
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRM------------GDEAFEPLLESL-SNEDWRIR 59

Query: 78  RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137
             A W + N      R         +  L +L+  +   V S A   L  +         
Sbjct: 60  GAAAWIIGNF--QDER--------AVEPLIKLLEDDSGFVRSGAARSLEQIGG------- 102

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQA 164
           + V  A     + KL    +      A
Sbjct: 103 ERVRAA-----MEKLAETGTGFARKVA 124

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
           D  AV   +KLL   S  +R  +  +L  I            G   +   + +L      
Sbjct: 71  DERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAETGTG 118

Query: 75  SMKRIATWTL 84
             +++A   L
Sbjct: 119 FARKVAVNYL 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 68/418 (16%), Positives = 124/418 (29%), Gaps = 122/418 (29%)

Query: 5   KTLED------KKAVVDH---------GAVPIFVKLLASPSDDIR--MQSV------WAL 41
           K ++D       K  +DH         G + +F  LL+   + ++  ++ V      + +
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 42  GNIAAES--P--------RFRDLVLGEAALIP--------LLTQLNNHENLSMKRIATWT 83
             I  E   P          RD +  +  +             +L     L   R A   
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNV 153

Query: 84  LSNLCG----GKPRPIFDQVRPCLPTLAQLVHSND--EHVMSNAC-WGLSLLCDGGKNDE 136
           L  + G    GK              +A  V  +   +  M     W L+L       + 
Sbjct: 154 L--IDGVLGSGK------TW------VALDVCLSYKVQCKMDFKIFW-LNL----KNCNS 194

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR----GDYSQTLYIINCGALPYLL 192
            + V+E      L KLL     +  +++ H+     R        + L        PY  
Sbjct: 195 PETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYEN 245

Query: 193 GLLI-DN--HKTSIK--NYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKK 247
            LL+  N  +  +    N +C I+  +T   + Q+   + A     +     +       
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKIL--LTTRFK-QVTDFLSAATTTHISLDHHSMTLT-PD 301

Query: 248 EAAWAISNATFGGTHEQIKYLEREGC-IKPL-CDLL--LCPDPQIVTVCLKALENILKVG 303
           E    +          + + L RE     P    ++     D       L   +N   V 
Sbjct: 302 EVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWDNWKHV- 350

Query: 304 EAEKNTDTDIGDVNQYAQLVEEA-KGLEKIENLQRHDNYEIHEKSAKI----LETYWC 356
                      + ++   ++E +   LE  E  +  D   +   SA I    L   W 
Sbjct: 351 -----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 52/320 (16%), Positives = 111/320 (34%), Gaps = 37/320 (11%)

Query: 20  PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI 79
           P   + + +P    R  +V A G I  E P    L       +P L +L    ++ ++  
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427

Query: 80  ATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137
           A WT+  +C   P    +   + P L  L + + +    V SN CW  S L +       
Sbjct: 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAAD 486

Query: 138 QAVIEAG------------VCPRLVKLLGHPSQ---SVLTQALHTVGNIAR---GDYSQT 179
            A  +              +  +L++    P     ++ + A  ++  I +    D    
Sbjct: 487 VADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA 546

Query: 180 LYIINCGALPYLLGLL----------IDNHKTSIKNYACWIISNITAGNREQIQAVIDAG 229
           +       +  L  +L                 +++  C  + N+    + Q    I   
Sbjct: 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606

Query: 230 LIGPLVNLLQNAV--FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDP 286
           ++  L+ + Q+      ++++A  A+S        E +KY+E       L   L    + 
Sbjct: 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA--FKPFLGIGLKNYAEY 664

Query: 287 QIVTVCLKALENILKVGEAE 306
           Q+    +  + ++ +  ++ 
Sbjct: 665 QVCLAAVGLVGDLCRALQSN 684

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 38/304 (12%), Positives = 88/304 (28%), Gaps = 27/304 (8%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
             IF+  ++         SV AL  ++ ++     +   E+    LLT + + +      
Sbjct: 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLY 395

Query: 79  IATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ 138
                ++NL                              +           +       +
Sbjct: 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK----AAKEDILLFNEK 451

Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
            ++   +   L + + + S +   Q +  + NI R        +   GA+  +L  L + 
Sbjct: 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANK 510

Query: 199 HKTS--IKNYACWIISN--ITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKK------- 247
                 I+   C  ++   I        +       I  L  LL  +             
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 248 -------EAAWAISNATFGGTHEQIKYLER----EGCIKPLCDLLLCPDPQIVTVCLKAL 296
                  EA  A++N     T +  +  +     +     + +L+L  +  +    L+ +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 297 ENIL 300
            N++
Sbjct: 631 SNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 88/343 (25%)

Query: 10  KKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN 69
           +K ++    +    + + + S + + Q V  + NI   S  F   +  + A+  +L  L 
Sbjct: 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLA 508

Query: 70  N--HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL 127
           N       ++ +    L+ +                     L+ +N   +          
Sbjct: 509 NKQDIGEPIRILGCRALTRM---------------------LIFTNPGLIF--------- 538

Query: 128 LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGA 187
                K   + A+      P L +LL   +        +        +Y   L + N   
Sbjct: 539 ----KKYSALNAI------PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN--- 585

Query: 188 LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI--QAVIDAGLIGPLVNLLQNAVFYI 245
                                  +++    + E++    V        + NL+ +    +
Sbjct: 586 -----------------------LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622

Query: 246 KKEAAWAISNATFGGTHEQIKYLERE-----GCIKPLCDLLLCPDPQIVTVCLKALENIL 300
           ++     ISN          K+   E          L  LL   D +          NI 
Sbjct: 623 QRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682

Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEI 343
                     T I  + +  +L+ + + +E    +      +I
Sbjct: 683 ----------TTIPLIAK--ELLTKKELIENAIQVFADQIDDI 713

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 23/255 (9%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           + +  +   +   +++  +   L  I ++   F    + +A L  L        N  +  
Sbjct: 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQA-LYALTIATMKSPNDKVAS 284

Query: 79  IATWTLSNLCGGKPR--PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
           +     S +C  +        Q             S+ + V+ N    L+   +  ++D+
Sbjct: 285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD 344

Query: 137 IQAVIEAGVC-----------------PRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
               + AG C                   + + +   +      A+   G+I  G     
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ-AVIDAGLIGPLVNLL 238
                  ALP +L L+ D     +K    W I  I     E I       G++   +  L
Sbjct: 405 RTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463

Query: 239 QNAVFYIKKEAAWAI 253
           Q+    +    +W I
Sbjct: 464 QDHP-KVATNCSWTI 477

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 37/276 (13%), Positives = 85/276 (30%), Gaps = 28/276 (10%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           SI     + ++    H A+P  + L+   S  ++  + W +G IA       + +  +  
Sbjct: 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS---VAESIDPQQH 451

Query: 61  LIPLLTQLNNHENLSMKRI--ATWTLSNLCGGKPRPIFDQVRPCLPT-LAQLVHS----- 112
           L  ++           K     +WT+ NL           +    P  +  L+ +     
Sbjct: 452 LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511

Query: 113 NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
           N+ +  ++A   L+ + +   +   +      +   ++  LG        Q         
Sbjct: 512 NEFNARASAFSALTTMVEYATDTVAETSAS--ISTFVMDKLGQTMSVDENQLTLEDAQSL 569

Query: 173 RGDYSQTLYIINCGA--------------LPYLLGLLIDNHKTSIKNYACWIISNITAGN 218
           +   S  L ++                  +     LL       I++   + IS + A  
Sbjct: 570 QELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629

Query: 219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
            +  +  ++      L+  L      +   A   I+
Sbjct: 630 GKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIA 664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 51/286 (17%)

Query: 18  AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
                   L   +  ++  ++  LG + +         +    L   + +L    N  ++
Sbjct: 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSSE-------MCR-DLAGEVEKLLKTSNSYLR 159

Query: 78  RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI 137
           + A     ++    P    + +   LP    L++  +  V+  +   + LL +  +    
Sbjct: 160 KKAALCAVHVIRKVP----ELMEMFLPATKNLLNEKNHGVLHTS---VVLLTEMCERSPD 212

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID 197
                  + P+LV++L                N+    YS    +      P+L   ++ 
Sbjct: 213 MLAHFRKLVPQLVRIL---------------KNLIMSGYSPEHDVSGISD-PFLQVRILR 256

Query: 198 NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS-NA 256
                       ++  +   + +  +A+ D      L  +  N      K    AI    
Sbjct: 257 ------------LLRILGRNDDDSSEAMND-----ILAQVATNTE--TSKNVGNAILYET 297

Query: 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302
                  + +   R   I  L   LL  D  I  V L +L   ++ 
Sbjct: 298 VLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.7
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.7
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.68
3grl_A	651	General vesicular transport factor P115; vesicle t	99.67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.66
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.65
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.6
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.59
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.59
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.58
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.54
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.52
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.51
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.51
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.46
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.43
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.37
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.27
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.25
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.24
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.23
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.16
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.14
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.14
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.13
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.13
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.04
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	99.04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.03
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.94
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.93
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.83
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.82
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.8
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.79
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.69
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.43
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.25
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.13
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	98.07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.07
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.07
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.93
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.91
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.9
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.84
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.75
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.74
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.74
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.72
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.69
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.54
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.52
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.5
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.46
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.44
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.35
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.33
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.29
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.28
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.25
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.14
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.04
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.84
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.79
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.77
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.71
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.64
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.49
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.3
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.97
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.9
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.48
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.58
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.5
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.31
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.27
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.27
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.26
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	94.07
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.01
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.95
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	92.32
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.28
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.92
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.84
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.81
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	91.39
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.77
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.64
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	90.46
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.41
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.87
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.84
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.63
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.62
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	89.5
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.44
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.44
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.28
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	88.61
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	88.37
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	86.57
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	85.18
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	83.24
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	82.88
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	82.01
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.81
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	80.76

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.5e-48  Score=359.86  Aligned_cols=351  Identities=46%  Similarity=0.736  Sum_probs=322.8

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC----ChhH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE----NLSM   76 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~----~~~~   76 (383)
                      |+|+++++++..+++.|++|.|+++|.++++++++.|+|+|+|++.++++.+..+.+.|+++.|+.++....    ...+
T Consensus       127 nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~  206 (510)
T 3ul1_B          127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY  206 (510)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHH
T ss_pred             HHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHH
Confidence            688999999999999999999999999999999999999999999999999999999999999999994321    2357


Q ss_pred             HHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142           77 KRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH  155 (383)
Q Consensus        77 ~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~  155 (383)
                      .+.++|++.+++.+. +........+++|.|.+++.+++++++..++|+|.+++.. +.+....+.+.|+++.|+.+|.+
T Consensus       207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~  285 (510)
T 3ul1_B          207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA  285 (510)
T ss_dssp             HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcC
Confidence            889999999999987 5556666789999999999999999999999999999998 77778888899999999999999


Q ss_pred             CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      ++..++..++++|++++.+++.....+++.|+++.|..++.++ ++.+++.++|+|+|++.+++.....+++.|+++.|+
T Consensus       286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv  364 (510)
T 3ul1_B          286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  364 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999888888899999999999999998 999999999999999999999999999999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc
Q 037142          236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD  315 (383)
Q Consensus       236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  315 (383)
                      .++.+++.++|++|+|+|+|++..++.+++.++++.|++++|+++|+++|++++..++++|.+++..+++..       .
T Consensus       365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~  437 (510)
T 3ul1_B          365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------E  437 (510)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------C
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------c
Confidence            999999999999999999999988888999999999999999999999999999999999999998876543       3


Q ss_pred             ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          316 VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       316 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+.+..+|+++||+++|+.|++|++++|+++|..+|++||.++++
T Consensus       438 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            567899999999999999999999999999999999999987654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.1e-47  Score=360.42  Aligned_cols=351  Identities=46%  Similarity=0.730  Sum_probs=322.8

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC----ChhH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE----NLSM   76 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~----~~~~   76 (383)
                      |+|+++++++..+++.|++|.|+++|.++++++++.|+|+|+|++.++++++..+.+.|++++|+.+|....    ...+
T Consensus       146 nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~  225 (529)
T 3tpo_A          146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY  225 (529)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999999995322    2357


Q ss_pred             HHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142           77 KRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH  155 (383)
Q Consensus        77 ~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~  155 (383)
                      .+.++|++++++.+. +........+++|.|.+++.+++++++..++|+|.+++.+ +.+....+...|+++.|+.+|.+
T Consensus       226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~  304 (529)
T 3tpo_A          226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA  304 (529)
T ss_dssp             HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcC
Confidence            889999999999987 5556666789999999999999999999999999999998 77778888899999999999999


Q ss_pred             CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      +++.++..++++|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+
T Consensus       305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv  383 (529)
T 3tpo_A          305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  383 (529)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence            9999999999999999999888888899999999999999998 999999999999999999999999999999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc
Q 037142          236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD  315 (383)
Q Consensus       236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  315 (383)
                      .++.+++.+++++|+|+|+|++..++++++..+++.|++++|+++|.++|++++..++++|.+++..+++..       .
T Consensus       384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~  456 (529)
T 3tpo_A          384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------E  456 (529)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------C
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------C
Confidence            999999999999999999999988788999999999999999999999999999999999999998776532       3


Q ss_pred             ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          316 VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       316 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+.+..+|+++||+++|+.|++|++++|+++|..+|++||.++++
T Consensus       457 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          457 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            567899999999999999999999999999999999999987654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.3e-42  Score=323.40  Aligned_cols=362  Identities=68%  Similarity=1.065  Sum_probs=325.1

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++++++++..+++.|+++.|+++|.+++++++..|+|+|++++.+++..+..+.+.|+++.|+.++.++.+..++..+
T Consensus       144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a  223 (528)
T 4b8j_A          144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNA  223 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence            46778899999999999999999999999999999999999999999899999999999999999999667789999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV  160 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v  160 (383)
                      +|+|++++...+........+++|.|.+++.+++++++..++++|.+++.. .+.....+.+.|+++.|+.+|.++++.+
T Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~v  302 (528)
T 4b8j_A          224 TWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSV  302 (528)
T ss_dssp             HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCChhH
Confidence            999999999876677777799999999999999999999999999999988 6777788889999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                      +..++++|++++.+++...+.+++.|+++.|+.++.++.++.++..|+|+|+|++.+++.....+++.++++.|+.++.+
T Consensus       303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~  382 (528)
T 4b8j_A          303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT  382 (528)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            99999999999998887888888999999999999876578999999999999999988888999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA  320 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~  320 (383)
                      +++.++..|+|+|+|++..++++...++.+.|+++.|++++.+++++++..++++|.+++..++......  ....+.+.
T Consensus       383 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~--~~~~~~~~  460 (528)
T 4b8j_A          383 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA--AGDVNVFS  460 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc--cccccHHH
Confidence            9999999999999999987778999999999999999999999999999999999999998776532210  01345789


Q ss_pred             HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCcc
Q 037142          321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVGPQPG  365 (383)
Q Consensus       321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  365 (383)
                      .++.++|+++.|..+++|++++++++|..++++||..++++.+..
T Consensus       461 ~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~  505 (528)
T 4b8j_A          461 QMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGA  505 (528)
T ss_dssp             HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence            999999999999999999999999999999999999877655544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.8e-41  Score=313.17  Aligned_cols=357  Identities=53%  Similarity=0.829  Sum_probs=320.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++++++....+++.|+++.|+++|++++++++..|+++|++++.++++.+..+.+.|+++.|++++.++.+..++..+
T Consensus        91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a  170 (450)
T 2jdq_A           91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA  170 (450)
T ss_dssp             HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence            35667788888999999999999999999999999999999999999889999999999999999999545789999999


Q ss_pred             HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142           81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS  159 (383)
Q Consensus        81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~  159 (383)
                      +|+|++++.+. +........+++|.+.+++.++++.++..++|+|.+++.. .++....+...|+++.++.++.++++.
T Consensus       171 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~  249 (450)
T 2jdq_A          171 VWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYK  249 (450)
T ss_dssp             HHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTCSCHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCCCchh
Confidence            99999999876 5555566699999999999999999999999999999987 667777888889999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ++..++++|++++.+.+...+.+.+.|+++.++.++.++ ++.++..++++|+|++.+++...+.+++.++++.|+.++.
T Consensus       250 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~  328 (450)
T 2jdq_A          250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ  328 (450)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence            999999999999988877777778889999999999998 9999999999999999988888888889999999999999


Q ss_pred             cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHH
Q 037142          240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQY  319 (383)
Q Consensus       240 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~  319 (383)
                      ++++.+|..|+|+|+|++...+++..+.+.+.|+++.|++++++++++++..++++|.+++..++..+..  .....+.+
T Consensus       329 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~~~~~  406 (450)
T 2jdq_A          329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR--NGTGINPY  406 (450)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH--SCSCCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc--cccchhHH
Confidence            9999999999999999997656788888889999999999999999999999999999999877653210  01134578


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142          320 AQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       320 ~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      ...|.+.|+++.|..+++++++++++.|..++.+||++++++
T Consensus       407 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999999999999999877653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=5.1e-41  Score=316.03  Aligned_cols=356  Identities=51%  Similarity=0.774  Sum_probs=322.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++++++.+..+++.|+++.|+++|.+++++++..|+|+|++++.+++..+..+...|+++.|+.++ .+.+..++..+
T Consensus       157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a  235 (530)
T 1wa5_B          157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTA  235 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHH
Confidence            46777889999999999999999999999999999999999999998889999999999999999999 56889999999


Q ss_pred             HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142           81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS  159 (383)
Q Consensus        81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~  159 (383)
                      +|+|++++.+. +........+++|.|+.++.++++.++..++|+|.+++.. .++....+.+.|+++.|+.+|.++++.
T Consensus       236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~  314 (530)
T 1wa5_B          236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTL  314 (530)
T ss_dssp             HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhcCcHHHHHHHHCCCChh
Confidence            99999999887 6666677799999999999999999999999999999987 667778888889999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ++..++++|++++.+++...+.+++.|+++.++.++.++ ++.++..|+++|+|++.+++...+.+++.++++.|+.++.
T Consensus       315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~  393 (530)
T 1wa5_B          315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE  393 (530)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence            999999999999988877777788899999999999998 9999999999999999988888888899999999999999


Q ss_pred             cCchhHHHHHHHHHHHhcCCCCH--HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCccc
Q 037142          240 NAVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVN  317 (383)
Q Consensus       240 ~~~~~v~~~a~~~l~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~  317 (383)
                      ++++.++..|+|+|++++..+++  +..+.+.+.|+++.|+.++.+++++++..++++|.+++..++.....  .....+
T Consensus       394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~--~~~~~~  471 (530)
T 1wa5_B          394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA--RGLNIN  471 (530)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HTCSSC
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc--cccccc
Confidence            99999999999999999986555  78888899999999999999999999999999999999877653210  001245


Q ss_pred             HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142          318 QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       318 ~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      .++..+.+.|+++.|..|+++++++|++.|..+|.+||..++++
T Consensus       472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            68899999999999999999999999999999999999987764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.4e-40  Score=307.81  Aligned_cols=334  Identities=25%  Similarity=0.362  Sum_probs=298.3

Q ss_pred             HHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            8 EDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         8 ~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      .....+++.|++|.|+++|++ .++++|..|+|+|+|+++++++.+..+++.|+++.|+++| ++++..+++.|+|+|+|
T Consensus        91 ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~n  169 (510)
T 3ul1_B           91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGN  169 (510)
T ss_dssp             CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence            346789999999999999985 6689999999999999999999999999999999999999 78899999999999999


Q ss_pred             hcCCCCC-CChhhhhchhHHHHHhhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142           87 LCGGKPR-PIFDQVRPCLPTLAQLVHSND-----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV  160 (383)
Q Consensus        87 l~~~~~~-~~~~~~~~~i~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v  160 (383)
                      |+.+.+. +......|+++.++.++...+     ..+++.++|++.+++.+ ...........+++|.|+.++.++++++
T Consensus       170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~lp~L~~LL~~~~~~v  248 (510)
T 3ul1_B          170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPAPPLDAVEQILPTLVRLLHHNDPEV  248 (510)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC-CSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc-ccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence            9998744 344556899999999998654     45788999999999987 4433334444568999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  240 (383)
                      +..++++|++++.+.++..+.+.+.|+++.|+.++.+. +..++..++++++|++.+++.....+++.|+++.|..++.+
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~  327 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  327 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred             HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence            99999999999988887777788999999999999999 99999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHH
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYA  320 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~  320 (383)
                      ++..+++.|+|+|+|++.. +..+...+.+.|+++.|+.++.+++++++..|+|+|.|++..+..            ...
T Consensus       328 ~~~~v~~~A~~aL~nl~a~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~------------~~~  394 (510)
T 3ul1_B          328 PKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV------------EQI  394 (510)
T ss_dssp             SSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH------------HHH
T ss_pred             CCHHHHHHHHHHHHHHHcC-cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH------------HHH
Confidence            9999999999999999987 578899999999999999999999999999999999999976543            345


Q ss_pred             HHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          321 QLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       321 ~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      ..+.+.|+++.|.++++++++++...++++|.+++..
T Consensus       395 ~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            6688999999999999999999999999999888753

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-39  Score=304.61  Aligned_cols=335  Identities=25%  Similarity=0.361  Sum_probs=299.6

Q ss_pred             ChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142            6 TLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL   84 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L   84 (383)
                      .......+++.|++|.|+++|.. .+++++..|+|+|+|++.++++.+..+++.|+++.|+.+| .+++..+++.|+|+|
T Consensus       108 ~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL  186 (529)
T 3tpo_A          108 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWAL  186 (529)
T ss_dssp             SCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             CCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            33456789999999999999975 6699999999999999999999999999999999999999 788999999999999


Q ss_pred             HhhcCCCCC-CChhhhhchhHHHHHhhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCCh
Q 037142           85 SNLCGGKPR-PIFDQVRPCLPTLAQLVHSND-----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQ  158 (383)
Q Consensus        85 ~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~  158 (383)
                      +||+.+++. +......|+++.|+.++...+     ..+.+.++|++.+++.+ ..+........+++|.|+.++.++++
T Consensus       187 ~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~lp~L~~LL~~~~~  265 (529)
T 3tpo_A          187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPAPPLDAVEQILPTLVRLLHHNDP  265 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC-CTTCCCHHHHHHHHHHHHHHTTSSCH
T ss_pred             HHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc-ccchhhHHHHhhHHHHHHHHhcCCcH
Confidence            999998743 345556899999999998654     45788999999999987 44433444445689999999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      +++..++++|++++.+.++..+.+.+.|+++.|+.++.++ ++.++..++++++|++.+++.....+++.|+++.|+.++
T Consensus       266 ~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL  344 (529)
T 3tpo_A          266 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL  344 (529)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH
Confidence            9999999999999998887778788999999999999999 999999999999999999999999999999999999999


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142          239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ  318 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~  318 (383)
                      .+++..++++|+|+|+|++.. ++.+...+.+.|+++.|+.++.+++++++..|+|+|.|++..+..            .
T Consensus       345 ~~~~~~i~~~a~~aL~nl~~~-~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~------------~  411 (529)
T 3tpo_A          345 TNPKTNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV------------E  411 (529)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH------------H
T ss_pred             cCCCHHHHHHHHHHHHHHhcc-cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH------------H
Confidence            999999999999999999987 578889999999999999999999999999999999999976443            3


Q ss_pred             HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          319 YAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       319 ~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      ....+.+.|+++.|.+++.++++++...++++|.+++.
T Consensus       412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45668899999999999999999999999999988874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=8.8e-39  Score=293.84  Aligned_cols=342  Identities=18%  Similarity=0.173  Sum_probs=288.6

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |++.++++.+..+++.|++|.|+++|++++++++..|+|+|.|++.++++.+..+.+.|+++.|+++|..+++.++++.+
T Consensus        28 ~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a  107 (457)
T 1xm9_A           28 HTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL  107 (457)
T ss_dssp             HHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHH
Confidence            46777778888999999999999999999999999999999999998889999999999999999999547789999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhc--------c--------CCHHHHHHHHHHHHHhccCCCchHHHHHHHh-
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--------S--------NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA-  143 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~--------~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-  143 (383)
                      +|+|+|++.+...+..... |++|.|++++.        +        .++++++.++|+|.+++..  ++....+.+. 
T Consensus       108 ~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~  184 (457)
T 1xm9_A          108 TGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYS  184 (457)
T ss_dssp             HHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTST
T ss_pred             HHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcC
Confidence            9999999998544444444 99999999993        2        3567888999999999986  6677778887 


Q ss_pred             CcHHHHHHhcCC------CChhhHHHHHHHHhhhhcC-------------------------------------------
Q 037142          144 GVCPRLVKLLGH------PSQSVLTQALHTVGNIARG-------------------------------------------  174 (383)
Q Consensus       144 ~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~-------------------------------------------  174 (383)
                      |+++.|+.+|++      .+..++..++.+|+++++.                                           
T Consensus       185 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (457)
T 1xm9_A          185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDC  264 (457)
T ss_dssp             THHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------------
T ss_pred             CCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccC
Confidence            999999999975      4677888999999998731                                           


Q ss_pred             -------CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH---H-HHHH-hcCChHHHHHHhhcCc
Q 037142          175 -------DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ---I-QAVI-DAGLIGPLVNLLQNAV  242 (383)
Q Consensus       175 -------~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~---~-~~~~-~~~~l~~L~~ll~~~~  242 (383)
                             .+...+.+++.|+++.++.+|.+..++.+++.|+|+|+|++.++...   . +.++ +.|++|.|++++.+++
T Consensus       265 ~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~  344 (457)
T 1xm9_A          265 PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN  344 (457)
T ss_dssp             -CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC
T ss_pred             CccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC
Confidence                   12234556677889999999987757899999999999999865332   2 3444 6899999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH------HHHHHHHHHHHHHHHhchhcccCcCCCCcc
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP------QIVTVCLKALENILKVGEAEKNTDTDIGDV  316 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~  316 (383)
                      .+++++|+|+|.|++.+   ...+.++..+++++|+++|..+++      ++...++++|.+++..+             
T Consensus       345 ~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-------------  408 (457)
T 1xm9_A          345 SDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------------  408 (457)
T ss_dssp             HHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             HhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-------------
Confidence            99999999999999976   234555667899999999997643      68889999999998643             


Q ss_pred             cHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCCCC
Q 037142          317 NQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       317 ~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      +...+.+.++|+++.|.+|+.++ ++++++.|..+|.+||.+.+-+
T Consensus       409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            34677788999999999999999 9999999999999999886643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.4e-37  Score=289.29  Aligned_cols=334  Identities=25%  Similarity=0.372  Sum_probs=299.4

Q ss_pred             HHHHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            8 EDKKAVVDHGAVPIFVKLLASPS-DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         8 ~~~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      +....+++.|+++.|+++|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+| .+++..++..|+|+|++
T Consensus       108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~  186 (528)
T 4b8j_A          108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGN  186 (528)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence            66788999999999999999876 99999999999999999899999999999999999999 67899999999999999


Q ss_pred             hcCCCCC-CChhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142           87 LCGGKPR-PIFDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA  164 (383)
Q Consensus        87 l~~~~~~-~~~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a  164 (383)
                      ++.+.+. +......++++.|+.++ .+.++.++..++|+|.+++.. . +........++++.|+.+|.++++.++..+
T Consensus       187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~-~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  264 (528)
T 4b8j_A          187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG-K-PQPSFEQTRPALPALARLIHSNDEEVLTDA  264 (528)
T ss_dssp             HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS-S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9987533 33444578999999999 577899999999999999987 3 223334457899999999999999999999


Q ss_pred             HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-ch
Q 037142          165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-VF  243 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~  243 (383)
                      +++|++++.+.+...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.+++...+.+++.|+++.|+.++.++ ++
T Consensus       265 ~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  343 (528)
T 4b8j_A          265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK  343 (528)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence            9999999988777777788899999999999999 899999999999999999989999999999999999999998 99


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLV  323 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  323 (383)
                      .++..|+|+|+|++.. +++....+++.|+++.|+.++.+++++++..|+++|.+++..+.            +.....+
T Consensus       344 ~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~------------~~~~~~l  410 (528)
T 4b8j_A          344 SIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS------------HDQIKYL  410 (528)
T ss_dssp             HHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC------------HHHHHHH
Confidence            9999999999999985 67888899999999999999999999999999999999998632            2346667


Q ss_pred             HHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          324 EEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       324 ~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      .+.|+++.|.+++.+++++++..+..+|.+++...
T Consensus       411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999998887643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.5e-36  Score=283.10  Aligned_cols=338  Identities=25%  Similarity=0.334  Sum_probs=300.3

Q ss_pred             hHHHHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142            7 LEDKKAVVDHGAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      ...+..+++.|+++.|+++|.++ ++.++..|+|+|++++..+++.+..+++.|+++.|+++| .+++..++..|+|+|+
T Consensus       120 ~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~  198 (530)
T 1wa5_B          120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALG  198 (530)
T ss_dssp             SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            34567788999999999999996 899999999999999998889999999999999999999 5778999999999999


Q ss_pred             hhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142           86 NLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA  164 (383)
Q Consensus        86 ~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a  164 (383)
                      +++.+.+ .+......++++.|+.++.+.+++++..++|+|.+++.+ ..+........++++.|+.++.++++.++..+
T Consensus       199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a  277 (530)
T 1wa5_B          199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETLVDA  277 (530)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC-SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred             HHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC-CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence            9998753 333445579999999999999999999999999999987 42344455557899999999999999999999


Q ss_pred             HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      +++|++++...+...+.+++.|+++.|+.++.+. ++.++..++++|++++.+++...+.+++.|+++.|+.++.++++.
T Consensus       278 ~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  356 (530)
T 1wa5_B          278 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN  356 (530)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHH
Confidence            9999999988776777788889999999999988 999999999999999999988888889999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHH
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVE  324 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  324 (383)
                      ++..|+|+|++++.. +++..+.+++.|+++.|+.++.+++++++..|+++|.+++..+...          +...+.+.
T Consensus       357 vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~----------~~~~~~l~  425 (530)
T 1wa5_B          357 IKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR----------PDIIRYLV  425 (530)
T ss_dssp             HHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC----------THHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHH
Confidence            999999999999986 5688888889999999999999999999999999999999864320          13455677


Q ss_pred             HhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          325 EAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       325 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      +.|+++.|.+++.+++++++..|..+|.+++...
T Consensus       426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999888654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.1e-37  Score=276.64  Aligned_cols=340  Identities=18%  Similarity=0.153  Sum_probs=282.8

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCCC------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh----------H
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLASP------------SDDIRMQSVWALGNIAAESPRFRDLVLGEAAL----------I   62 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~~------------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~   62 (383)
                      .+++.|..+++.|++|.|+++|+..            +++++..|+|+|+||+...++..+...+.|++          +
T Consensus        58 ~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~  137 (458)
T 3nmz_A           58 SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCE  137 (458)
T ss_dssp             SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhH
Confidence            3567889999999999999999963            36999999999999998888877777777777          6


Q ss_pred             HHHHHhcCCC-Chh-----HH-------HHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhcc-----------CCHHHH
Q 037142           63 PLLTQLNNHE-NLS-----MK-------RIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHS-----------NDEHVM  118 (383)
Q Consensus        63 ~L~~~L~~~~-~~~-----~~-------~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~-----------~~~~~~  118 (383)
                      .+++++.... +.+     ++       .+|+|+|.|++.+...+......|+++.|+.++..           .+++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~  217 (458)
T 3nmz_A          138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR  217 (458)
T ss_dssp             HHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             HHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHH
Confidence            6677774221 111     33       39999999998876556666779999999999952           247899


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC-CCccccceecCCChHHHHHhhc
Q 037142          119 SNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLLI  196 (383)
Q Consensus       119 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~l~~ll~  196 (383)
                      +.++|+|.+++.+ ++.....+.. .|++|.|+.+|++++++++..++++|++|+.. ++..+..+.+.|+++.|+.+|.
T Consensus       218 ~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl  296 (458)
T 3nmz_A          218 RYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL  296 (458)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC-CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence            9999999999988 5545555543 56699999999999999999999999999975 4556677889999999999764


Q ss_pred             cccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCch----hHHHHHHHHHHHhcCC--CCHHHHHHHH
Q 037142          197 DNHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVF----YIKKEAAWAISNATFG--GTHEQIKYLE  269 (383)
Q Consensus       197 ~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~l~~l~~~--~~~~~~~~l~  269 (383)
                      +..++.+++.++++|+|++.++++.+..+. ..|+++.|+.++.+++.    ++++.|+|+|.|++..  .++++.+.+.
T Consensus       297 ~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~  376 (458)
T 3nmz_A          297 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR  376 (458)
T ss_dssp             TCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            432889999999999999986667777777 79999999999987654    4999999999999961  3578899999


Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 037142          270 REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAK  349 (383)
Q Consensus       270 ~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~  349 (383)
                      +.|+++.|+.++.+++.++++.|+++|.|++...             +.....+.+.|+++.|.+++.++++++++.|..
T Consensus       377 ~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-------------~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~  443 (458)
T 3nmz_A          377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-------------PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA  443 (458)
T ss_dssp             HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-------------HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-------------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999999999999999999999998532             234566889999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 037142          350 ILETYWCGR  358 (383)
Q Consensus       350 ~l~~~~~~~  358 (383)
                      +|.++....
T Consensus       444 AL~nL~~~~  452 (458)
T 3nmz_A          444 ALRNLMANR  452 (458)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHcCC
Confidence            999998763

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-36  Score=288.72  Aligned_cols=343  Identities=15%  Similarity=0.115  Sum_probs=289.7

Q ss_pred             CCChHHHHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-----------------------------HHH-
Q 037142            4 SKTLEDKKAVVD-HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-----------------------------RFR-   52 (383)
Q Consensus         4 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-----------------------------~~~-   52 (383)
                      +.+++.+..++. .|++|.|+++|+++++.++..|+|+|+|++.+.+                             ..+ 
T Consensus       407 S~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~  486 (810)
T 3now_A          407 TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK  486 (810)
T ss_dssp             TTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred             hCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence            346777888775 6999999999999999999999999999997541                             122 


Q ss_pred             --HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 037142           53 --DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD  130 (383)
Q Consensus        53 --~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~  130 (383)
                        +.+++.|+++.|++++ +++++.++++|+|+|+|++.+.+.+......|++|.|+.++.++++..++.++|+|.+++.
T Consensus       487 r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~  565 (810)
T 3now_A          487 RITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI  565 (810)
T ss_dssp             HHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence              6788999999999999 6889999999999999999876655566669999999999999999999999999999997


Q ss_pred             CCCchHHHH--HHHhCcHHHHHHhcCCCCh-hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142          131 GGKNDEIQA--VIEAGVCPRLVKLLGHPSQ-SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA  207 (383)
Q Consensus       131 ~~~~~~~~~--~~~~~~i~~l~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a  207 (383)
                      . .++....  ....+++|.|+.+|.++.. ..+..++++|.||+..+++..+.+++.|+++.|+.++.+. ++.++..|
T Consensus       566 ~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A  643 (810)
T 3now_A          566 T-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAA  643 (810)
T ss_dssp             H-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHH
T ss_pred             C-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHH
Confidence            5 3332211  0113589999999987533 4456899999999998877788899999999999999998 99999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHh-cCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCCCC
Q 037142          208 CWIISNITAGNREQIQAVID-AGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCDLLLCPD  285 (383)
Q Consensus       208 ~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~  285 (383)
                      +++++|++.++ +....+++ .|.++.|+.++.+++..+|+.|+|+|+|++.. ++.+++.+++ .|+++.|+.++.+++
T Consensus       644 ~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d  721 (810)
T 3now_A          644 AQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPS  721 (810)
T ss_dssp             HHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred             HHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence            99999999866 45556664 78999999999999999999999999999974 4788899998 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCCCCCC
Q 037142          286 PQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD---NYEIHEKSAKILETYWCGRVVGP  362 (383)
Q Consensus       286 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~  362 (383)
                      .+++..|+|++.|++..+.             .....+.+.|+++.|.+++..+   +.++++.|.++|+.+...+.-++
T Consensus       722 ~~vq~~A~~aL~NL~~~s~-------------e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~  788 (810)
T 3now_A          722 PAVQHRGIVIILNMINAGE-------------EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHHHHHHHHHTTCH-------------HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHhCCH-------------HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence            9999999999999997422             3567789999999999997654   78999999999999988776555


Q ss_pred             Cc
Q 037142          363 QP  364 (383)
Q Consensus       363 ~~  364 (383)
                      ..
T Consensus       789 ~~  790 (810)
T 3now_A          789 SD  790 (810)
T ss_dssp             --
T ss_pred             CC
Confidence            44

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=9.2e-36  Score=275.06  Aligned_cols=341  Identities=18%  Similarity=0.224  Sum_probs=279.6

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC-ChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAE-SPRFRDLVLGEAALIPLLTQLNNHENLSMKRI   79 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~   79 (383)
                      |+|.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.. +++.+..+.+.|+++.|+++|.+..+.++++.
T Consensus        74 ~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~  153 (584)
T 3l6x_A           74 HLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEV  153 (584)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHH
Confidence            46788999999999999999999999999999999999999999985 68999999999999999999965568899999


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchhHHHHHhhc------------------cCCHHHHHHHHHHHHHhccCCCchHHHHHH
Q 037142           80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH------------------SNDEHVMSNACWGLSLLCDGGKNDEIQAVI  141 (383)
Q Consensus        80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  141 (383)
                      ++++|.||+.....+ .....+++|.|++++.                  ..++.++++++++|.||+.. .....+.+.
T Consensus       154 aa~aL~nLS~~~~~k-~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~  231 (584)
T 3l6x_A          154 ITGTLWNLSSHDSIK-MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE-RSEARRKLR  231 (584)
T ss_dssp             HHHHHHHHTTSGGGH-HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHH
T ss_pred             HHHHHHHHhCCchhh-HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            999999999865333 3333678999999871                  23579999999999999987 555566677


Q ss_pred             H-hCcHHHHHHhcCC------CChhhHHHHHHHHhhhhcCCC-------------------------ccccceecCCChH
Q 037142          142 E-AGVCPRLVKLLGH------PSQSVLTQALHTVGNIARGDY-------------------------SQTLYIINCGALP  189 (383)
Q Consensus       142 ~-~~~i~~l~~~L~~------~~~~v~~~a~~~L~~l~~~~~-------------------------~~~~~l~~~~~i~  189 (383)
                      + .|+++.|+.++++      .+...+..|+++|+||+....                         ...+.+.+.++++
T Consensus       232 ~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~  311 (584)
T 3l6x_A          232 ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR  311 (584)
T ss_dssp             HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHH
T ss_pred             HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHH
Confidence            6 4677899999864      567899999999999996521                         1122333445567


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHhcCCH---HHHH-HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 037142          190 YLLGLLIDNHKTSIKNYACWIISNITAGNR---EQIQ-AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI  265 (383)
Q Consensus       190 ~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~---~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  265 (383)
                      .++.++.+..++.+++.|+++|+|++.+..   ...+ .+.+.++++.|+.+|.+++..+++.|+|+|.|++....  ..
T Consensus       312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~  389 (584)
T 3l6x_A          312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NK  389 (584)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HH
Confidence            888999654489999999999999998752   2223 33467899999999999999999999999999998742  22


Q ss_pred             HHHHHcCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142          266 KYLEREGCIKPLCDLLLCP--------DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR  337 (383)
Q Consensus       266 ~~l~~~~~i~~L~~ll~~~--------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~  337 (383)
                       ..+..|+++.|+.+|.++        ..+++..|+++|.|++....             ...+.+.+.|+++.|.+++.
T Consensus       390 -~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-------------~~~~~I~~~g~I~~Lv~LL~  455 (584)
T 3l6x_A          390 -ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-------------EAAKKLRETQGIEKLVLINK  455 (584)
T ss_dssp             -HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHTTHHHHHHHHHT
T ss_pred             -HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHCCChHHHHHHHh
Confidence             344778999999999876        35788899999999996433             34566889999999999999


Q ss_pred             CC--CHHHHHHHHHHHHHhcCCCC
Q 037142          338 HD--NYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       338 ~~--~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ++  .+.+.+.|..+|.+++...+
T Consensus       456 s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          456 SGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCCCChHHHHHHHHHHHHHHcCHH
Confidence            86  88999999999999997654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-35  Score=282.97  Aligned_cols=362  Identities=16%  Similarity=0.099  Sum_probs=299.0

Q ss_pred             ccCCChHHHHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            2 IASKTLEDKKAVV-DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         2 ~~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      +.++.++....++ ..|+++.|+.++.++++.++..|+|++++++.+ +..|+.+.+.|+ +.|..++ ++.+..++..|
T Consensus       274 i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll-~s~~~~vr~~A  350 (810)
T 3now_A          274 LLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLY-HSKNDGIRVRA  350 (810)
T ss_dssp             HHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHT-TCSCHHHHHHH
T ss_pred             HhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHH-cCCCHHHHHHH
Confidence            4567788888888 789999999999999999999999999998776 789999999885 9999999 57778899999


Q ss_pred             HHHHHhhcCCC---CC-CCh--hhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHh
Q 037142           81 TWTLSNLCGGK---PR-PIF--DQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKL  152 (383)
Q Consensus        81 ~~~L~~l~~~~---~~-~~~--~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~  152 (383)
                      +++|+++....   +. ...  .....+++.+.+++.++  +++++++++|+|.+++.. ++.......+.|++|.|+.+
T Consensus       351 l~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~L  429 (810)
T 3now_A          351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDL  429 (810)
T ss_dssp             HHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHH
Confidence            99999997532   22 221  22356688899999887  899999999999999988 44444444467999999999


Q ss_pred             cCCCChhhHHHHHHHHhhhhcCCCcc--------------------------------ccceecCCChHHHHHhhccccc
Q 037142          153 LGHPSQSVLTQALHTVGNIARGDYSQ--------------------------------TLYIINCGALPYLLGLLIDNHK  200 (383)
Q Consensus       153 L~~~~~~v~~~a~~~L~~l~~~~~~~--------------------------------~~~l~~~~~i~~l~~ll~~~~~  200 (383)
                      |+++++.++..++++|.|++.+.+..                                ++.+++.|+++.|+.++.++ +
T Consensus       430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s  508 (810)
T 3now_A          430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-S  508 (810)
T ss_dssp             HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-C
T ss_pred             hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-C
Confidence            99999999999999999999865311                                25677889999999999998 9


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHH-HHcCChHHHHh
Q 037142          201 TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYL-EREGCIKPLCD  279 (383)
Q Consensus       201 ~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l-~~~~~i~~L~~  279 (383)
                      +.+++.|+|+|+|++. +++.+..+++.|++|.|+.++.++++..|+.|+|+|+|++...+++..... ...+++++|++
T Consensus       509 ~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~  587 (810)
T 3now_A          509 HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN  587 (810)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH
Confidence            9999999999999984 567999999999999999999999999999999999999876555543210 11359999999


Q ss_pred             hcCCCCH-HHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          280 LLLCPDP-QIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       280 ll~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      ++.++.. ..+..|+++|.|++...+             ...+.+.+.|+++.|.+++.++++.|++.|..++.++....
T Consensus       588 LL~~~~~~l~~~eAl~AL~NLa~~~d-------------~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~  654 (810)
T 3now_A          588 LLQQDCTALENFESLMALTNLASMNE-------------SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE  654 (810)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCH-------------HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            9986533 445689999999997543             34555778999999999999999999999999999988653


Q ss_pred             C-----------CCCCcccccccccccchhhhccC
Q 037142          359 V-----------VGPQPGLLYAGNEENEEEDALGV  382 (383)
Q Consensus       359 ~-----------~~~~~~~~~~~~~~~~~~~~~~~  382 (383)
                      +           -..+..++.+.+...+..++|++
T Consensus       655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL  689 (810)
T 3now_A          655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL  689 (810)
T ss_dssp             HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            3           14455667778888888888875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=265.99  Aligned_cols=300  Identities=18%  Similarity=0.190  Sum_probs=253.9

Q ss_pred             CccCCChHHHHHHHhCCCh----------HHHHHhhCCC--ChH-----HHH-------HHHHHHHHHhcCChHHHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAV----------PIFVKLLASP--SDD-----IRM-------QSVWALGNIAAESPRFRDLVL   56 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i----------~~L~~lL~~~--~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~   56 (383)
                      |+++++++......+.|++          +.+++++.+.  +++     +++       +|+|+|+|++.+ +++|+.+.
T Consensus       108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~  186 (458)
T 3nmz_A          108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMN  186 (458)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence            5667778888888888888          7777888764  223     555       999999999765 89999999


Q ss_pred             hcCChHHHHHHhcC----------CCChhHHHHHHHHHHhhcCCCCCCChhh--hhchhHHHHHhhccCCHHHHHHHHHH
Q 037142           57 GEAALIPLLTQLNN----------HENLSMKRIATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLVHSNDEHVMSNACWG  124 (383)
Q Consensus        57 ~~g~i~~L~~~L~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~l~~ll~~~~~~~~~~~~~~  124 (383)
                      +.|++++|+.+|..          +.+..+++.|+|+|.||+.+++.....+  ..|++|.|+.++.+++++++..++|+
T Consensus       187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a  266 (458)
T 3nmz_A          187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV  266 (458)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999931          1346789999999999998764222222  35679999999999999999999999


Q ss_pred             HHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCCcccccee-cCCChHHHHHhhccccch-
Q 037142          125 LSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDYSQTLYII-NCGALPYLLGLLIDNHKT-  201 (383)
Q Consensus       125 l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~-  201 (383)
                      |.+++...++.+...+.+.|+++.|+++| +++++.++..++.+|+||+.++++....+. ..|+++.|+.+|.+. ++ 
T Consensus       267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~-~~~  345 (458)
T 3nmz_A          267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQT  345 (458)
T ss_dssp             HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC-CSS
T ss_pred             HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC-CCc
Confidence            99999741346777888999999999975 557889999999999999985544444455 789999999999877 43 


Q ss_pred             ---hHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 037142          202 ---SIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIK  275 (383)
Q Consensus       202 ---~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~  275 (383)
                         .+++.++++|.|++.   ++++.++.+.+.|+++.|+.+|.+++..++++|+|+|+|++.. ++++...+.+.|+++
T Consensus       346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~  424 (458)
T 3nmz_A          346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS  424 (458)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHH
Confidence               489999999999997   7889999999999999999999999999999999999999965 578999999999999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          276 PLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       276 ~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      +|++++.++++.+++.|+++|.|++...
T Consensus       425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          425 MLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.4e-33  Score=260.34  Aligned_cols=331  Identities=25%  Similarity=0.323  Sum_probs=288.9

Q ss_pred             HHHHhC-CChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142           11 KAVVDH-GAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC   88 (383)
Q Consensus        11 ~~~~~~-g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~   88 (383)
                      ..+++. |+++.|+++|.++ ++.++..|+++|.+++..+++....+.+.|+++.|+++| +++++.++..++++|++++
T Consensus        57 ~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~  135 (450)
T 2jdq_A           57 DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIA  135 (450)
T ss_dssp             HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence            456777 9999999999997 899999999999999998888888888999999999999 6789999999999999999


Q ss_pred             CCCCC-CChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCC-chHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142           89 GGKPR-PIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGK-NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL  165 (383)
Q Consensus        89 ~~~~~-~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~  165 (383)
                      .+.+. +......++++.+++++.+ .+.+++..++|+|.+++.. . +....... .++++.++.++.++++.++..++
T Consensus       136 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~  213 (450)
T 2jdq_A          136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG-KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADAC  213 (450)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC-SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC-CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHH
Confidence            87632 2333447899999999995 6899999999999999976 3 22112222 57899999999999999999999


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhH
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI  245 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  245 (383)
                      ++|++++...+.....+.+.|+++.++.++.++ ++.++..++++|++++.+++...+.+++.|+++.|+.++.++++.+
T Consensus       214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  292 (450)
T 2jdq_A          214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI  292 (450)
T ss_dssp             HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHH
Confidence            999999987766666677889999999999988 9999999999999999998888888889999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH
Q 037142          246 KKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE  325 (383)
Q Consensus       246 ~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  325 (383)
                      |..|+|+|++++.. ++...+.+.+.|+++.|++++.+++++++..|+++|.+++..+..            ...+.+.+
T Consensus       293 r~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~l~~  359 (450)
T 2jdq_A          293 KKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA------------EQIKYLVE  359 (450)
T ss_dssp             HHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH------------HHHHHHHH
Confidence            99999999999975 467888888899999999999999999999999999999975321            23444568


Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          326 AKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       326 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      .|+++.|.+++.+++.+++..|..+|.++....
T Consensus       360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG  392 (450)
T ss_dssp             HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999998887644

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2e-32  Score=257.82  Aligned_cols=332  Identities=17%  Similarity=0.176  Sum_probs=279.1

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI   79 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~   79 (383)
                      |++.++++.+..+++.|+++.|++++.+ .+...+..++.+|.+++. +++.+..+.+.|+++.|+.++ .+++..++..
T Consensus       169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~  246 (529)
T 1jdh_A          169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQN  246 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHH
Confidence            4567789999999999999999999987 455677788999999997 457889999999999999999 5668999999


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CC
Q 037142           80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PS  157 (383)
Q Consensus        80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~  157 (383)
                      ++|+|.+++...+..  ....+++|.+.+++.+++++++..++++|.+++.+ +++....+.+.|+++.++++|.+  ++
T Consensus       247 a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~  323 (529)
T 1jdh_A          247 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR  323 (529)
T ss_dssp             HHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHccCCH
Confidence            999999999876432  23468999999999999999999999999999987 66788889999999999999976  34


Q ss_pred             hhhHHHHHHHHhhhhcCCCc---cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142          158 QSVLTQALHTVGNIARGDYS---QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL  234 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L  234 (383)
                      +.++..++++|++++..++.   ....+.+.|+++.++.++.++.++.++..++|+++|++.++ .....+.+.|+++.|
T Consensus       324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L  402 (529)
T 1jdh_A          324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRL  402 (529)
T ss_dssp             HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHH
Confidence            79999999999999976543   23467788999999999998834699999999999999865 445778899999999


Q ss_pred             HHHhhcCchhHHHHHHHHHHH----------------------hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142          235 VNLLQNAVFYIKKEAAWAISN----------------------ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC  292 (383)
Q Consensus       235 ~~ll~~~~~~v~~~a~~~l~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  292 (383)
                      +.++.++++++|++|+|+++|                      ++..  ++....+.+.|+++.|+.++.+++++++..+
T Consensus       403 ~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a  480 (529)
T 1jdh_A          403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  480 (529)
T ss_dssp             HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence            999999888999988887776                      4432  4556678889999999999999999999999


Q ss_pred             HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      .+++.++...              +.+...+.+.|+++.|.+++++++++|++.|..+|.++
T Consensus       481 ~~~l~~l~~~--------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          481 AGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHTTS--------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            9999998742              23677799999999999999999999999999999865

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=7.4e-33  Score=243.47  Aligned_cols=273  Identities=19%  Similarity=0.192  Sum_probs=235.0

Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC----------CCChhHHHHHHHHHHhhcCCCC-CCChhh
Q 037142           30 SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN----------HENLSMKRIATWTLSNLCGGKP-RPIFDQ   98 (383)
Q Consensus        30 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~~~   98 (383)
                      +...+.+|+|+|+|++.+ +++|+.+.+.|+++.|+.+|..          ..+..++..|+|+|.||+.+++ .+....
T Consensus        45 ~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345566899999999987 7999999999999999999931          1246789999999999998763 222222


Q ss_pred             -hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCC
Q 037142           99 -VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        99 -~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                       ..|++|.|+++++++++++++.++|+|.+++...++++...+.+.|++|.|+++| ++++++++..++.+|++|+.+++
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             3566999999999999999999999999999741345677888999999999975 66788999999999999998665


Q ss_pred             cccccee-cCCChHHHHHhhccccch----hHHHHHHHHHHHHhc---CCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142          177 SQTLYII-NCGALPYLLGLLIDNHKT----SIKNYACWIISNITA---GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE  248 (383)
Q Consensus       177 ~~~~~l~-~~~~i~~l~~ll~~~~~~----~~~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~  248 (383)
                      +....+. ..|+++.|+.++.+. ++    .+++.++++|.|++.   ++++.++.+.+.|+++.|+.++.+++..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            4444555 789999999999876 43    489999999999997   68899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      |+|+|.|++.. ++++.+.+.+.|+++.|++++.++++.+++.|+++|.+++...+.
T Consensus       283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999965 578899999999999999999999999999999999999987544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.7e-33  Score=258.63  Aligned_cols=343  Identities=13%  Similarity=0.128  Sum_probs=278.0

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCCh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIF   96 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~   96 (383)
                      .+|.|+++|++++++++..|+++|.+++..++..+..+.+.|+++.|+++| +++++.++..|+|+|.||+.++ +.+..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            589999999999999999999999999988878888899999999999999 6788999999999999999974 44445


Q ss_pred             hhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--------C--------CChh
Q 037142           97 DQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--------H--------PSQS  159 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--------~--------~~~~  159 (383)
                      ....|++|.|++++. ++++++++.++|+|++++..  ++....+.+ |++|.|+.+|.        +        .+..
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            556899999999999 88999999999999999987  456666777 99999999993        2        2456


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcCC---------------
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAGN---------------  218 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~~---------------  218 (383)
                      +...++++|+||+.+ ++..+.+.+. |+++.|+.++.+.     .+..+...+++++.|++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            777999999999987 6677778887 9999999999851     15678889999999986311               


Q ss_pred             -----------------------------------HHHHHHHHhcCChHHHHHHhhcC-chhHHHHHHHHHHHhcCCCCH
Q 037142          219 -----------------------------------REQIQAVIDAGLIGPLVNLLQNA-VFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       219 -----------------------------------~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~  262 (383)
                                                         +...+.+++.++++.++.++.+. ++.+++.|+|+|+|++....+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               01122344566788999999764 789999999999999986432


Q ss_pred             --HHH-HHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          263 --EQI-KYLE-REGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       263 --~~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                        ... +..+ +.|+++.|++++.+++.+++..|+|+|.++.....              ....+ ..|+++.|.+++.+
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--------------~~~~i-~~~~i~~Lv~lL~~  382 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--------------LHRVM-GNQVFPEVTRLLTS  382 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--------------GHHHH-HHHTHHHHHHTTTS
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--------------HHHHH-HHhhhHHHHHhccC
Confidence              122 4444 58999999999999999999999999999986321              23344 45789999999988


Q ss_pred             CCH------HHHHHHHHHHHHhcCCCCC-----------CCCccccccc-ccccchhhhc
Q 037142          339 DNY------EIHEKSAKILETYWCGRVV-----------GPQPGLLYAG-NEENEEEDAL  380 (383)
Q Consensus       339 ~~~------~v~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~  380 (383)
                      +++      ++...+..++.++...+.+           +++..++.++ ++..+++|++
T Consensus       383 ~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~  442 (457)
T 1xm9_A          383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence            643      6778888888888766542           7778888888 7777777664

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.4e-32  Score=258.38  Aligned_cols=335  Identities=17%  Similarity=0.162  Sum_probs=280.6

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASP-SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRI   79 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~   79 (383)
                      |++.++++++..+++.|+++.|++++.+. ...++..++.+|.+++. +++.+..+++.|+++.|+.++ .+.+..+++.
T Consensus       166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~  243 (644)
T 2z6h_A          166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQN  243 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHH
T ss_pred             HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHH
Confidence            45667899999999999999999999974 46788999999999996 457899999999999999999 5678999999


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-
Q 037142           80 ATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS-  157 (383)
Q Consensus        80 a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~-  157 (383)
                      ++|+|.+++...+..  ....++++.|++++.+++++++..++++|.+++.. +......+.+.|+++.|+.++.+ ++ 
T Consensus       244 a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~  320 (644)
T 2z6h_A          244 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR  320 (644)
T ss_dssp             HHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHccCCc
Confidence            999999999875332  34468999999999999999999999999999988 66778888999999999999987 33 


Q ss_pred             hhhHHHHHHHHhhhhcCCCc---cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHH
Q 037142          158 QSVLTQALHTVGNIARGDYS---QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPL  234 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L  234 (383)
                      +.++..++++|++++...++   ....+.+.|+++.|+.+|.+..++.++..++++|+|++.++. ....+++.|+++.|
T Consensus       321 ~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~L  399 (644)
T 2z6h_A          321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRL  399 (644)
T ss_dssp             HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHH
Confidence            79999999999999975442   223367789999999999987347999999999999998764 45788899999999


Q ss_pred             HHHhhcCchhHH----------------------HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 037142          235 VNLLQNAVFYIK----------------------KEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVC  292 (383)
Q Consensus       235 ~~ll~~~~~~v~----------------------~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  292 (383)
                      +.++.+++.++|                      ..++.+|.+++..  ......+.+.|+++.|++++.+++++++..+
T Consensus       400 v~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a  477 (644)
T 2z6h_A          400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  477 (644)
T ss_dssp             HHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence            999987655444                      4555556666654  4556677789999999999999999999999


Q ss_pred             HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      +++|.++...              +.+...+.+.|+++.|.+++++++++|+..|..+|.++..+
T Consensus       478 ~~aL~~l~~~--------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~  528 (644)
T 2z6h_A          478 AGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED  528 (644)
T ss_dssp             HHHHHHHHTS--------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcC--------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence            9999998852              23677899999999999999999999977665555554443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.6e-32  Score=253.60  Aligned_cols=347  Identities=15%  Similarity=0.158  Sum_probs=276.2

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC-C-C
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG-K-P   92 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~-~-~   92 (383)
                      ..+.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+|+.|+++| ++++..+++.|+|+|.||+.+ + .
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHH
Confidence            467899999999999999999999999999998889999999999999999999 688999999999999999985 3 4


Q ss_pred             CCChhhhhchhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC-----------------
Q 037142           93 RPIFDQVRPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG-----------------  154 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~-----------------  154 (383)
                      .+......|++|.|++++.+ .+.++++.++++|++|+..  +++...+.+ +++|.|++++.                 
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence            44556669999999999997 6789999999999999986  556666665 46899999871                 


Q ss_pred             -CCChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcCCHHH------
Q 037142          155 -HPSQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAGNREQ------  221 (383)
Q Consensus       155 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~~~~~------  221 (383)
                       .+++.++..+.++|+||+..+++..+.+.+. |+++.|+.++.+.     .+...++.|+++|.||+......      
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence             2467999999999999998877666667765 6678999998741     26778999999999998652111      


Q ss_pred             -------------------HHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCH--HHHH-HHHHcCChHHHH
Q 037142          222 -------------------IQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTH--EQIK-YLEREGCIKPLC  278 (383)
Q Consensus       222 -------------------~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~--~~~~-~l~~~~~i~~L~  278 (383)
                                         .+.+.+.++++.++.++. +.++.+++.|+|+|.|++....+  ...+ .+.+.++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                               111223345677888886 46899999999999999876422  2233 333468899999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC--------CHHHHHHHHHH
Q 037142          279 DLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD--------NYEIHEKSAKI  350 (383)
Q Consensus       279 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--------~~~v~~~a~~~  350 (383)
                      ++|.+++.+++..|+++|.|+.....              ....| ..|+++.|.+++.++        ++++...|..+
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--------------~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~t  426 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDAR--------------NKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT  426 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCS--------------CHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChh--------------HHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999997432              12334 679999999999886        46788888888


Q ss_pred             HHHhcCCCCC-----------CCCccccccc--ccccchhhhc
Q 037142          351 LETYWCGRVV-----------GPQPGLLYAG--NEENEEEDAL  380 (383)
Q Consensus       351 l~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~  380 (383)
                      |.++...+.+           .++..+++++  ++..+.+|++
T Consensus       427 L~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~  469 (584)
T 3l6x_A          427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL  469 (584)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence            8887765432           6777777776  5555555554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=9.3e-33  Score=260.10  Aligned_cols=375  Identities=16%  Similarity=0.127  Sum_probs=296.6

Q ss_pred             ccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHH
Q 037142            2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIAT   81 (383)
Q Consensus         2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~   81 (383)
                      ++..+++.+..+++.|+++.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++.+..+...+..++
T Consensus       128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~  207 (529)
T 1jdh_A          128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS  207 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHH
Confidence            45555677888889999999999999999999999999999999988999999999999999999996666677788899


Q ss_pred             HHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhH
Q 037142           82 WTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL  161 (383)
Q Consensus        82 ~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~  161 (383)
                      .+|.+++.....+......++++.+..++.+++++++..++|++.+++.. .+.. .  ...++++.+++++.+++++++
T Consensus       208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~-~--~~~~~i~~L~~ll~~~~~~v~  283 (529)
T 1jdh_A          208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINVV  283 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT-CTTC-S--CCHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC-Chhh-H--HHHhHHHHHHHHHcCCCHHHH
Confidence            99999998654444455589999999999999999999999999999987 3221 1  123679999999999999999


Q ss_pred             HHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCHH---HHHHHHhcCChHHHHHH
Q 037142          162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVNL  237 (383)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~~---~~~~~~~~~~l~~L~~l  237 (383)
                      ..++++|++++.++++..+.+.+.|+++.++.++.+. .++.++..++++|+|++.++++   .+..+.+.|+++.|+.+
T Consensus       284 ~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l  363 (529)
T 1jdh_A          284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL  363 (529)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence            9999999999988777788888999999999999863 1479999999999999886433   46677899999999999


Q ss_pred             hhcCc-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH--HhchhcccC-----
Q 037142          238 LQNAV-FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL--KVGEAEKNT-----  309 (383)
Q Consensus       238 l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~--~~~~~~~~~-----  309 (383)
                      +.+++ ..++..++|+|+|++..  ++....+.+.|+++.|++++.+++++++..+.|++.|..  ..+...+..     
T Consensus       364 L~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~  441 (529)
T 1jdh_A          364 LHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG  441 (529)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHH
Confidence            99876 59999999999999986  344578889999999999999888888887777776611  100000000     


Q ss_pred             -cCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC----------CCCCCCcccccccccccchhh
Q 037142          310 -DTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG----------RVVGPQPGLLYAGNEENEEED  378 (383)
Q Consensus       310 -~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  378 (383)
                       ..........+..+.+.|+++.|.+++.+++++++..+..++.++..+          +..+++..+..+.++..+..+
T Consensus       442 al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a  521 (529)
T 1jdh_A          442 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA  521 (529)
T ss_dssp             HHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHH
Confidence             000000123455688999999999999999999999999999887754          223677888888888888888


Q ss_pred             hccC
Q 037142          379 ALGV  382 (383)
Q Consensus       379 ~~~~  382 (383)
                      ++++
T Consensus       522 ~~aL  525 (529)
T 1jdh_A          522 AAVL  525 (529)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=1.4e-29  Score=246.91  Aligned_cols=336  Identities=17%  Similarity=0.165  Sum_probs=284.3

Q ss_pred             ccCCChHHHHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            2 IASKTLEDKKAVVDHGAVPIFVKLLASPS-DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         2 ~~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      ++..+++.+..+++.|+++.|++++.+.+ ...+..++.+|.+++.. +..+..+++.|+++.|+.++ .+.+..+++.+
T Consensus       303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a  380 (780)
T 2z6g_A          303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNC  380 (780)
T ss_dssp             HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHH
T ss_pred             HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHH
Confidence            45567899999999999999999999754 55677889999999964 57888899999999999999 56788999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-h
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS-Q  158 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~-~  158 (383)
                      +++|.+++...+.  .....++++.|++++.+.+++++..++++|.+++.. +.+....+.+.|+++.|+.+|.+ ++ +
T Consensus       381 ~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~  457 (780)
T 2z6g_A          381 LWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDRE  457 (780)
T ss_dssp             HHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHH
Confidence            9999999987633  233478999999999999999999999999999998 67788888889999999999987 33 4


Q ss_pred             hhHHHHHHHHhhhhcCCCcc---ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          159 SVLTQALHTVGNIARGDYSQ---TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~---~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      .++..++++|++++...++.   ...+...|+++.|+.++.+...+.++..++++|+|++.++ .....+.+.|+++.|+
T Consensus       458 ~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv  536 (780)
T 2z6g_A          458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLV  536 (780)
T ss_dssp             HHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHH
Confidence            89999999999998765432   2356778999999999998834599999999999999865 5567788999999999


Q ss_pred             HHhhcCchh----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHH
Q 037142          236 NLLQNAVFY----------------------IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCL  293 (383)
Q Consensus       236 ~ll~~~~~~----------------------v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al  293 (383)
                      .++.+++.+                      ++..++.+|++++..  +.....+.+.|+++.|++++.++++.++..++
T Consensus       537 ~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~  614 (780)
T 2z6g_A          537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA  614 (780)
T ss_dssp             HHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence            999875543                      455667777777754  56667778899999999999999999999999


Q ss_pred             HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .+|.++...              +.....|.+.|+++.|.+++++++++|++.|..+|.++..+..
T Consensus       615 ~aL~~L~~~--------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          615 GVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHTS--------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhcC--------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            999999742              2467789999999999999999999999998888888877654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.8e-31  Score=255.10  Aligned_cols=362  Identities=18%  Similarity=0.169  Sum_probs=299.2

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++.+++.+..+++.|+++.|+++|.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++.+......+..+
T Consensus       124 nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a  203 (644)
T 2z6h_A          124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  203 (644)
T ss_dssp             HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHH
Confidence            34555567788889999999999999999999999999999999988889999999999999999999655567888999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV  160 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v  160 (383)
                      +.+|.+++.....+......++++.+++++.+.+..++..++|+|.+++.. .... .  ...++++.|+.++.++++++
T Consensus       204 ~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~-~--~~~~~i~~Lv~lL~~~d~~v  279 (644)
T 2z6h_A          204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINV  279 (644)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTC-C--SCHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhh-h--hhhhHHHHHHHHHcCCCHHH
Confidence            999999998655455555689999999999999999999999999999986 3221 1  11257999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCH---HHHHHHHhcCChHHHHH
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNR---EQIQAVIDAGLIGPLVN  236 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~---~~~~~~~~~~~l~~L~~  236 (383)
                      +..++++|++|+.+++...+.+.+.|+++.|+.++.+..+ +.++..++++|+|++..++   .....+++.++++.|+.
T Consensus       280 ~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~  359 (644)
T 2z6h_A          280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK  359 (644)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHH
Confidence            9999999999998877777888899999999999987423 7999999999999987543   23444678999999999


Q ss_pred             HhhcCc-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH----------------------HHHHHHH
Q 037142          237 LLQNAV-FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP----------------------QIVTVCL  293 (383)
Q Consensus       237 ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~----------------------~v~~~al  293 (383)
                      ++.+++ ..+++.|+|+|+|++..  ++....+.+.|+++.|++++.+.++                      +++..++
T Consensus       360 lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~  437 (644)
T 2z6h_A          360 LLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT  437 (644)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHH
T ss_pred             HhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHH
Confidence            998874 69999999999999986  3445788899999999999976544                      4555566


Q ss_pred             HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC----------CCCCC
Q 037142          294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR----------VVGPQ  363 (383)
Q Consensus       294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~  363 (383)
                      .+|.+++...              ..+..+.+.|+++.|.+++.+++++++..|..+|.++..+.          .-+++
T Consensus       438 ~aL~~La~~~--------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L  503 (644)
T 2z6h_A          438 GALHILARDV--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  503 (644)
T ss_dssp             HHHHHHTTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCH--------------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence            6666666432              24566889999999999999999999999999988877542          12577


Q ss_pred             cccccccccccchhhhccC
Q 037142          364 PGLLYAGNEENEEEDALGV  382 (383)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~  382 (383)
                      ..++.+.+...|.++++++
T Consensus       504 ~~ll~~~~~~vr~~A~~aL  522 (644)
T 2z6h_A          504 TELLHSRNEGVATYAAAVL  522 (644)
T ss_dssp             HHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHH
Confidence            7888888888888877654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.9e-31  Score=233.35  Aligned_cols=254  Identities=19%  Similarity=0.170  Sum_probs=222.3

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHhcCCC
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLLTQLNNHE   72 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~   72 (383)
                      .++++|..+++.|+++.|+.+|..           .+++++..|+|+|.|++..++..+..+... |+++.|+++| +++
T Consensus        61 ~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~  139 (354)
T 3nmw_A           61 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSE  139 (354)
T ss_dssp             TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGG-GCS
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHH-CCC
Confidence            468999999999999999999952           347899999999999999887788877654 5699999999 688


Q ss_pred             ChhHHHHHHHHHHhhcCC-C-CCCChhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHH
Q 037142           73 NLSMKRIATWTLSNLCGG-K-PRPIFDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPR  148 (383)
Q Consensus        73 ~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~  148 (383)
                      +++++..++|+|.||+.. + ..+......|++|.|++++ ++.++++++.++++|++|+.. .+++...+. ..|+++.
T Consensus       140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~  218 (354)
T 3nmw_A          140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAF  218 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHH
Confidence            999999999999999985 2 2234445589999999975 567899999999999999985 456666666 6899999


Q ss_pred             HHHhcCCCCh----hhHHHHHHHHhhhhc---CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH
Q 037142          149 LVKLLGHPSQ----SVLTQALHTVGNIAR---GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ  221 (383)
Q Consensus       149 l~~~L~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~  221 (383)
                      |+.+|.++++    +++..++++|++++.   .+++..+.+.+.|+++.|+.+|.+. +..+++.|+++|+|++.++++.
T Consensus       219 Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~  297 (354)
T 3nmw_A          219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKD  297 (354)
T ss_dssp             HHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHH
Confidence            9999988654    489999999999996   5777778889999999999999998 9999999999999999888899


Q ss_pred             HHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC
Q 037142          222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT  261 (383)
Q Consensus       222 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  261 (383)
                      ++.+.+.|+++.|++++.+++..+++.|+|+|.|++.+.+
T Consensus       298 ~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999999999998754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=1.7e-30  Score=253.48  Aligned_cols=362  Identities=18%  Similarity=0.173  Sum_probs=298.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |++..+++.+..+.+.|+++.|+++|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.+++.......+..+
T Consensus       260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a  339 (780)
T 2z6g_A          260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  339 (780)
T ss_dssp             HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence            35555677888888999999999999999999999999999999988889999999999999999999655566677788


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhh
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSV  160 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v  160 (383)
                      +.+|.+++.....+......++++.|+.++.+.+..++..++++|.+++.. .... .  ...++++.|+.+|.++++.+
T Consensus       340 ~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~-~~~~-~--~~~~~i~~Lv~lL~~~d~~v  415 (780)
T 2z6g_A          340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQ-E--GMEGLLGTLVQLLGSDDINV  415 (780)
T ss_dssp             HHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT-CTTC-S--CCHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc-chhh-h--hhhhHHHHHHHHHcCCCHHH
Confidence            999999997654444455588999999999999999999999999999987 3221 1  11357899999999999999


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhcCChHHHHH
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNRE---QIQAVIDAGLIGPLVN  236 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~~---~~~~~~~~~~l~~L~~  236 (383)
                      +..++++|++|+.+++...+.+.+.|+++.|+.++.+..+ +.++..|+++|+|++..+++   ....+.+.++++.|+.
T Consensus       416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~  495 (780)
T 2z6g_A          416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK  495 (780)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998887777888889999999999986423 48999999999999875433   3456778999999999


Q ss_pred             HhhcCch-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCH----------------------HHHHHHH
Q 037142          237 LLQNAVF-YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDP----------------------QIVTVCL  293 (383)
Q Consensus       237 ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~----------------------~v~~~al  293 (383)
                      ++.+++. .+++.|+|+|+|++..  +.....+.+.|+++.|++++.++++                      +++..++
T Consensus       496 lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~  573 (780)
T 2z6g_A          496 LLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT  573 (780)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence            9998764 9999999999999975  5556788899999999999876443                      4555666


Q ss_pred             HHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC----------CCCCC
Q 037142          294 KALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR----------VVGPQ  363 (383)
Q Consensus       294 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~  363 (383)
                      .+|.+++..              ...+..+.+.|+++.|.+++.+++++++..|..+|.++..+.          --+++
T Consensus       574 ~aL~~La~~--------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L  639 (780)
T 2z6g_A          574 GALHILARD--------------IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  639 (780)
T ss_dssp             HHHHHHTTS--------------HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcC--------------hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHH
Confidence            777776532              224556889999999999999999999999999998876442          23667


Q ss_pred             cccccccccccchhhhccC
Q 037142          364 PGLLYAGNEENEEEDALGV  382 (383)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~  382 (383)
                      ..++.+.+...|.++++++
T Consensus       640 ~~Ll~~~~~~Vr~~A~~aL  658 (780)
T 2z6g_A          640 TELLHSRNEGVATYAAAVL  658 (780)
T ss_dssp             HHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHH
Confidence            7788888888888887764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2.7e-29  Score=213.33  Aligned_cols=241  Identities=26%  Similarity=0.358  Sum_probs=223.1

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~   95 (383)
                      |.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+++.|+++| ++++..++..++++|++++.+. ..+.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            6789999999999999999999999999998888999999999999999999 6778999999999999999885 3334


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      .....++++.++.++++++++++..++++|.+++.. .++....+.+.|+++.++++++++++.++..++++|++++..+
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            455579999999999999999999999999999976 6778888889999999999999999999999999999999888


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      +...+.+.+.|+++.++.++.++ ++.++..++++|++++.+++...+.+.+.|+++.|+.++.++++.++..|+++|.|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            77777788999999999999988 99999999999999999888999999999999999999999999999999999999


Q ss_pred             hcCCC
Q 037142          256 ATFGG  260 (383)
Q Consensus       256 l~~~~  260 (383)
                      ++...
T Consensus       239 l~~~~  243 (252)
T 4hxt_A          239 IKSGG  243 (252)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            98764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=4.2e-29  Score=212.18  Aligned_cols=239  Identities=33%  Similarity=0.469  Sum_probs=217.0

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~   95 (383)
                      ..++.+.+.|.+++++++..|+++|.++...+++.+..+.+.|+++.|+++| +++++.++..++++|++++.+. ....
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4688999999999999999999999887765678888999999999999999 6778999999999999999865 3334


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      .....|+++.++.++++++++++..++++|.+++.. .......+.+.|+++.++.+|.++++.++..++++|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            445588999999999999999999999999999988 5444478889999999999999999999999999999999888


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                      +...+.+.+.|+++.|+.++.++ ++.++..++++|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++|.|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            77777788899999999999998 99999999999999999998999999999999999999999999999999999999


Q ss_pred             hcC
Q 037142          256 ATF  258 (383)
Q Consensus       256 l~~  258 (383)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.6e-28  Score=206.36  Aligned_cols=244  Identities=28%  Similarity=0.368  Sum_probs=223.8

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                      |.++.|+++| ++++++++..++++|.+++...+ ........++++.+++++++++++++..++++|.+++.. .++..
T Consensus         2 ~~i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAI   79 (252)
T ss_dssp             CHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred             CcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHH
Confidence            5689999999 67789999999999999998874 334445579999999999999999999999999999987 67888


Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                      ..+.+.|+++.++.+++++++.++..++++|++++..++.....+.+.|+++.++.++.++ ++.++..++++|+|++..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence            8889999999999999999999999999999999987777788888999999999999998 999999999999999999


Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                      ++.....+.+.|+++.|+.++.++++.++..|+++|++++.. ++...+.+.+.|+++.|++++++++++++..|+++|.
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999985 5788889999999999999999999999999999999


Q ss_pred             HHHHhchhc
Q 037142          298 NILKVGEAE  306 (383)
Q Consensus       298 ~l~~~~~~~  306 (383)
                      ++.......
T Consensus       238 ~l~~~~~~~  246 (252)
T 4hxt_A          238 NIKSGGWLE  246 (252)
T ss_dssp             HHHHTCBCC
T ss_pred             HHHcCCCcc
Confidence            999876544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.2e-27  Score=203.18  Aligned_cols=239  Identities=36%  Similarity=0.521  Sum_probs=215.8

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                      ...+.++..| ++++++++..++++|.++.... +........++++.+++++++++++++..++++|.+++.+ .++..
T Consensus        12 ~~~~~~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQI   89 (252)
T ss_dssp             CSHHHHHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred             chHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHH
Confidence            4578899999 6888999999999998766543 3334445589999999999999999999999999999987 67888


Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                      ..+.+.|+++.++.+|+++++.++..++++|++++...+.....+.+.|+++.++.++.++ ++.++..++++|+|++.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999999999999999999988776656788999999999999998 999999999999999998


Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                      ++.....+.+.|+++.|+.++.++++.++..|+++|++++.. +++....+.+.|+++.|++++.+++++++..|+++|.
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~  247 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE  247 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            888888889999999999999999999999999999999975 5788888899999999999999999999999999999


Q ss_pred             HHHH
Q 037142          298 NILK  301 (383)
Q Consensus       298 ~l~~  301 (383)
                      +++.
T Consensus       248 ~l~~  251 (252)
T 4db8_A          248 KLQS  251 (252)
T ss_dssp             TTC-
T ss_pred             HHhc
Confidence            8864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=5.8e-27  Score=200.63  Aligned_cols=235  Identities=19%  Similarity=0.174  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH-hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHH
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK-LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG  193 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~  193 (383)
                      .+-+..++..|.+++..  .++...+.+.|++|.++. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.
T Consensus        54 ~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           54 QQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            46788899999999987  567777888999999999 999999999999999999999998888888999999999999


Q ss_pred             hhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037142          194 LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGC  273 (383)
Q Consensus       194 ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~  273 (383)
                      +|.++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. +++.+..+.+.|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCC
Confidence            998643789999999999999999988888899999999999999999999999999999999976 5688999999999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHH
Q 037142          274 IKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD-NYEIHEKSAKILE  352 (383)
Q Consensus       274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~  352 (383)
                      ++.|+.+|.+++++++..++++|.+++.........+.  ...+.+..++++     .++.++.++ +.+++++|..+++
T Consensus       211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~  283 (296)
T 1xqr_A          211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQ  283 (296)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987543221100  011345666654     366677565 7899999999999


Q ss_pred             HhcCCCC
Q 037142          353 TYWCGRV  359 (383)
Q Consensus       353 ~~~~~~~  359 (383)
                      +||.+++
T Consensus       284 ~~f~~~~  290 (296)
T 1xqr_A          284 TCFSSPA  290 (296)
T ss_dssp             HHCC---
T ss_pred             HHcCCCC
Confidence            9997654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=6e-25  Score=181.12  Aligned_cols=200  Identities=39%  Similarity=0.551  Sum_probs=185.6

Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ..+..+.+..++++++++++..++++|.+++.. +++....+.+.|+++.++.+|+++++.++..++++|++++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            367889999999999999999999999999987 6788888999999999999999999999999999999999888878


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcC
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      .+.+.+.|+++.++.++.++ ++.++..++++|+|++.+++.....+++.|+++.|+.++.++++.++..|+++|.|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88889999999999999999 99999999999999999998888899999999999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          259 GGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       259 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      . +++....+.+.|+++.|++++.+++++++..|+++|.++..
T Consensus       168 ~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 G-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             S-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             C-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            6 57788888899999999999999999999999999998863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=1.3e-24  Score=179.03  Aligned_cols=200  Identities=31%  Similarity=0.430  Sum_probs=180.5

Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-
Q 037142           14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-   92 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-   92 (383)
                      ...|..+.|..+|++++++++..|+++|.+++..+++.+..+.+.|+++.|+++| +++++.++..++++|++++.+.+ 
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcH
Confidence            4568899999999999999999999999999988889999999999999999999 67799999999999999997653 


Q ss_pred             CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      ........++++.++.+++++++.++..++++|.+++.. ..+....+.+.|+++.|+.+++++++.++..++++|++++
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            334445589999999999999999999999999999987 6777778889999999999999999999999999999999


Q ss_pred             cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      ..++.....+.+.|+++.|+.++.+. ++.+++.|+++|.+++.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            98777778888999999999999998 99999999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.1e-23  Score=194.38  Aligned_cols=322  Identities=12%  Similarity=0.090  Sum_probs=252.0

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC-
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGE-AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI-   95 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~-   95 (383)
                      ..+.+.++|.+++.+.+..|++.|..++.+. +.++.+.+. |+++.|+.+++...+..+..-++.+|.|++...+... 
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~  413 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX  413 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence            4567788888777677999999999998764 777777765 6699999999545678899999999999998654210 


Q ss_pred             --------------------------------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           96 --------------------------------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        96 --------------------------------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                                                            .....|++|.|..++.++++.+++.++|+|.+++..  .+..
T Consensus       414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R  491 (778)
T 3opb_A          414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFI  491 (778)
T ss_dssp             CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGH
T ss_pred             hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHH
Confidence                                                  112268999999999999999999999999999976  7788


Q ss_pred             HHHHHhCcHHHHHHhcCCCChh---hHHHHHHHHhhhhcCCC-cccc-ceecCCChHHHHHhhcc-ccch----------
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQS---VLTQALHTVGNIARGDY-SQTL-YIINCGALPYLLGLLID-NHKT----------  201 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~---v~~~a~~~L~~l~~~~~-~~~~-~l~~~~~i~~l~~ll~~-~~~~----------  201 (383)
                      ..+.+.|+++.|+.++.+....   .+..|+.+|.+++...+ ...- ...-.|++++|+.+|.. +...          
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            8899999999999999886543   88999999999984433 2110 00113899999999983 2111          


Q ss_pred             --hHHHHHHHHHHHHhcCC----HHHHHHHHhc-CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHc--
Q 037142          202 --SIKNYACWIISNITAGN----REQIQAVIDA-GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI-KYLERE--  271 (383)
Q Consensus       202 --~~~~~a~~~l~nl~~~~----~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~l~~~--  271 (383)
                        .-+.+|+.+|.|++..+    ++.+..++.. |+++.|..++.+++..+|+.|+++++|++.+  ++.+ +.+...  
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~  649 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNLEN  649 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSS
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcC
Confidence              12779999999999876    3456778874 9999999999999999999999999999975  3443 233321  


Q ss_pred             ----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC--CCHHHHH
Q 037142          272 ----GCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH--DNYEIHE  345 (383)
Q Consensus       272 ----~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~  345 (383)
                          +.++.|+.+++.+|.+++..|.++|.++....+..            ...++...++++.+.+++..  ++++++.
T Consensus       650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~  717 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQ  717 (778)
T ss_dssp             HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHH
Confidence                23789999999999999999999999997543321            23334445899999999888  8999999


Q ss_pred             HHHHHHHHhcC
Q 037142          346 KSAKILETYWC  356 (383)
Q Consensus       346 ~a~~~l~~~~~  356 (383)
                      ++..++.++++
T Consensus       718 R~~~~l~NL~~  728 (778)
T 3opb_A          718 RLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999999997

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.3e-22  Score=184.46  Aligned_cols=354  Identities=15%  Similarity=0.086  Sum_probs=270.0

Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      .+...|..+.|.+.+.+......+.+++-+.+.++.+..+|+.+.+ +.++.|.+.++ +  ..++..|+-+|..+....
T Consensus       250 lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~~~~~L~~~l~-~--~~ir~lAavvL~KL~~~~  325 (778)
T 3opb_A          250 IFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-NYLQLLERSLN-V--EDVQIYSALVLVKTWSFT  325 (778)
T ss_dssp             HHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHTT-S--GGGHHHHHHHHHHHTGGG
T ss_pred             HHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-hHHHHHHHHhc-c--HHHHHHHHHHHHHHhcCC
Confidence            3445688888888887655555667777777777777888888854 55788999884 3  578888888888887654


Q ss_pred             CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhh
Q 037142           92 PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGN  170 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~  170 (383)
                      .. .........+.+.+.+.+++.+-++.+++.|.+++.. +........+.++++.|+.+++. ++..+..-++.+|.|
T Consensus       326 ~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~N  403 (778)
T 3opb_A          326 KL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMAN  403 (778)
T ss_dssp             TC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHH
T ss_pred             CC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            22 2233456888899999887777799999999999987 44343334445779999999995 788899999999999


Q ss_pred             hhcCCCc--------------------------------------cccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          171 IARGDYS--------------------------------------QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       171 l~~~~~~--------------------------------------~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                      ++...+.                                      +...+.+.|+++.|+.++.+. ++.++..++++|.
T Consensus       404 Lt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~  482 (778)
T 3opb_A          404 LSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIY  482 (778)
T ss_dssp             TTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHH
T ss_pred             hcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            9975442                                      234567789999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHhcCChHHHHHHhhcCchh---HHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhcCC-CCH-
Q 037142          213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFY---IKKEAAWAISNATFGGTHEQIKYLER-EGCIKPLCDLLLC-PDP-  286 (383)
Q Consensus       213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~-~~~-  286 (383)
                      |++.. ++.+..+++.|+++.|+.++.+....   .|..|+.+|++++...++...-.-.. .+++++|+++|.. ++. 
T Consensus       483 nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~  561 (778)
T 3opb_A          483 NITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD  561 (778)
T ss_dssp             HHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred             HHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence            99754 68899999999999999999887544   89999999999997666665321001 3789999999983 221 


Q ss_pred             -----------HH-HHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH-hccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 037142          287 -----------QI-VTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE-AKGLEKIENLQRHDNYEIHEKSAKILET  353 (383)
Q Consensus       287 -----------~v-~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~v~~~a~~~l~~  353 (383)
                                 .. +..|+.||.|++...++..         ...++.+.+ .|+++.|++++.+++..|++.|.+++.+
T Consensus       562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~---------E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N  632 (778)
T 3opb_A          562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDG---------EEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN  632 (778)
T ss_dssp             SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHH---------HHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHHhcCCcccc---------hHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                       12 6789999999998653210         123344455 5999999999999999999999999999


Q ss_pred             hcCCCCC---C--------------CCcccccccccccchhhhccC
Q 037142          354 YWCGRVV---G--------------PQPGLLYAGNEENEEEDALGV  382 (383)
Q Consensus       354 ~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~  382 (383)
                      +....+.   .              ++..++..+++..|+.+++++
T Consensus       633 L~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL  678 (778)
T 3opb_A          633 MMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF  678 (778)
T ss_dssp             HHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            8876642   0              245667888899999988764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=1.4e-22  Score=173.41  Aligned_cols=170  Identities=14%  Similarity=0.188  Sum_probs=155.2

Q ss_pred             ChHHHHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHH
Q 037142            6 TLEDKKAVVDHGAVPIFVK-LLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTL   84 (383)
Q Consensus         6 ~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L   84 (383)
                      +.++.+.+++.|+++.|+. +|++++++++..|+|+|++++.+++.+++.+++.|++++|+++|.++++..+++.|+|+|
T Consensus        70 ~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~AL  149 (296)
T 1xqr_A           70 NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI  149 (296)
T ss_dssp             SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence            4578889999999999999 999999999999999999999999999999999999999999996556889999999999


Q ss_pred             HhhcCCCCC-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHH
Q 037142           85 SNLCGGKPR-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQ  163 (383)
Q Consensus        85 ~~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~  163 (383)
                      +|++.+.+. .......+++|.|+.++++++..++..++|+|.+++.+ .++.+..+.+.|+++.|+.+|.++++.++..
T Consensus       150 snl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~  228 (296)
T 1xqr_A          150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEH  228 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHH
T ss_pred             HHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHH
Confidence            999987633 23344478999999999999999999999999999988 7788899999999999999999999999999


Q ss_pred             HHHHHhhhhcCCC
Q 037142          164 ALHTVGNIARGDY  176 (383)
Q Consensus       164 a~~~L~~l~~~~~  176 (383)
                      ++++|++++...+
T Consensus       229 al~aL~~l~~~~~  241 (296)
T 1xqr_A          229 VLGALCSLVTDFP  241 (296)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCh
Confidence            9999999997744

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=5e-21  Score=156.75  Aligned_cols=196  Identities=13%  Similarity=0.086  Sum_probs=166.4

Q ss_pred             ChHHHHHhhCCCCh--HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCC
Q 037142           18 AVPIFVKLLASPSD--DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRP   94 (383)
Q Consensus        18 ~i~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~   94 (383)
                      .+|.++++|.++++  +++..|+++|.+++..+++.+..+.+.|++|+|+++| +++++++++.|+|+|.||+.++ ..+
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999888  8999999999999988889999999999999999999 6789999999999999999865 344


Q ss_pred             ChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC----------------CCC
Q 037142           95 IFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG----------------HPS  157 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~----------------~~~  157 (383)
                      ......|++|.|++++. +.+.++++.++.+|++|+..  +.....+.+. .++.|++++.                ..+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            55566899999999998 57899999999999999976  4555666664 6899988763                136


Q ss_pred             hhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccc-----cchhHHHHHHHHHHHHhcC
Q 037142          158 QSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDN-----HKTSIKNYACWIISNITAG  217 (383)
Q Consensus       158 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~-----~~~~~~~~a~~~l~nl~~~  217 (383)
                      +.++..+..+|+||+..+++..+.+.+. |+++.|+.+++..     .+...++.++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6899999999999998776677777765 6789999998742     2567899999999999754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=6.6e-20  Score=150.11  Aligned_cols=197  Identities=17%  Similarity=0.191  Sum_probs=168.2

Q ss_pred             hchhHHHHHhhccCCH--HHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142          100 RPCLPTLAQLVHSNDE--HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      .-.+|.+++++.++++  +++..+++++.+++.+ +++....+.+.|++|.|+++|+++++.++..|+++|+||+..+++
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            3468999999999887  8999999999999987 677888899999999999999999999999999999999988777


Q ss_pred             cccceecCCChHHHHHhhcc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh---c-------------
Q 037142          178 QTLYIINCGALPYLLGLLID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ---N-------------  240 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~-------------  240 (383)
                      ....+.+.|+++.|+.+|.+ . +..+++.++.+|.|++... ..+..+.+. +++.|++++.   +             
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence            88889999999999999984 5 8899999999999998754 556666664 6888887653   1             


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLERE-GCIKPLCDLLLC------PDPQIVTVCLKALENILK  301 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~  301 (383)
                      .+..++..|..+|.|++.. +++.++.+.+. |+++.|+.+++.      .+...++.|+.+|.||.-
T Consensus       163 ~~~~v~~na~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            2568999999999999986 46888888875 678999999874      255789999999999863

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.74  E-value=4.7e-16  Score=133.66  Aligned_cols=259  Identities=16%  Similarity=0.142  Sum_probs=200.1

Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      ...+.+.++.|++.|.++++.+|..|+++|+++..           .+.++.|+.++ +++++.++..++++|+.+....
T Consensus        18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~   85 (280)
T 1oyz_A           18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFC-SDKNYIRRDIGAFILGQIKICK   85 (280)
T ss_dssp             HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCT
T ss_pred             HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccc
Confidence            34567899999999999999999999999999872           13478899999 6889999999999999987532


Q ss_pred             CCCChhhhhchhHHHHH-hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           92 PRPIFDQVRPCLPTLAQ-LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        92 ~~~~~~~~~~~i~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                      .     ....+++.+.+ +++++++.++..++++|..+... ......     ..++.+...+.++++.++..++.+|+.
T Consensus        86 ~-----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~-~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           86 K-----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKK-NPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             T-----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             c-----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            1     12335555553 56788999999999999999854 222111     357889999999999999999999998


Q ss_pred             hhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHH
Q 037142          171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAA  250 (383)
Q Consensus       171 l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  250 (383)
                      +..           .+.++.|..++.++ ++.+|..++++|+.+....+         ..++.|..++.++++.+|..|+
T Consensus       155 ~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~  213 (280)
T 1oyz_A          155 IND-----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAI  213 (280)
T ss_dssp             C--------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHH
T ss_pred             cCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHH
Confidence            753           24789999999998 99999999999999864443         2467788899999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHH
Q 037142          251 WAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLE  330 (383)
Q Consensus       251 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  330 (383)
                      ++|+++..            ...++.|...+++++  ++..+.++|..+-.                        ...++
T Consensus       214 ~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------------------~~~~~  255 (280)
T 1oyz_A          214 IGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------------------KTLLP  255 (280)
T ss_dssp             HHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------------------GGGHH
T ss_pred             HHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------------------hhhhH
Confidence            99999862            236788888887654  88888888876631                        12356


Q ss_pred             HHHHHhc-CCCHHHHHHHHHHHH
Q 037142          331 KIENLQR-HDNYEIHEKSAKILE  352 (383)
Q Consensus       331 ~L~~l~~-~~~~~v~~~a~~~l~  352 (383)
                      .|.+++. ++++++...+.+.+.
T Consensus       256 ~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          256 VLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCcHHHHHHHHHhh
Confidence            6666654 567777777776654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.70  E-value=4.3e-16  Score=154.60  Aligned_cols=319  Identities=13%  Similarity=0.141  Sum_probs=227.5

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHH-HH---hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDL-VL---GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~-~~---~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      ++++.|++.+.++++.+++.++.+|+.++.+.+..... ..   -..+++.+++.+ ++++..++..|++++.++....+
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhccc
Confidence            47888899999999999999999999998643322110 00   013456677777 57789999999999998886543


Q ss_pred             CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      .........+++.+.+++.+++++++..++++|..++.. .++......+ ++++.+...++++++.++..++.++..++
T Consensus       207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~-~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~  284 (852)
T 4fdd_A          207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV-RMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLA  284 (852)
T ss_dssp             HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-CHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            222223357889999999999999999999999999986 4443333333 37888889999999999999999999998


Q ss_pred             cCCCccccceecC---CChHHHHHhh-----------cc--c--------cchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142          173 RGDYSQTLYIINC---GALPYLLGLL-----------ID--N--------HKTSIKNYACWIISNITAGNREQIQAVIDA  228 (383)
Q Consensus       173 ~~~~~~~~~l~~~---~~i~~l~~ll-----------~~--~--------~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~  228 (383)
                      .... . ...+..   .+++.++..+           .+  .        .+..+|..+..++..++...++   .++ .
T Consensus       285 ~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~  358 (852)
T 4fdd_A          285 EQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-P  358 (852)
T ss_dssp             TSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-H
T ss_pred             cchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-H
Confidence            6432 1 111221   3455666655           22  0        1346788999999988753321   111 2


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhccc
Q 037142          229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKN  308 (383)
Q Consensus       229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~  308 (383)
                      .+++.+...+.++++.+|..|++++++++.... +..... -.++++.++..++++++.++..+++++.++.........
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  436 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP  436 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH
Confidence            367778888888999999999999999998753 333322 235789999999999999999999999999976443211


Q ss_pred             CcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          309 TDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       309 ~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .        .+     -.+.++.|.+.+.++++.++..|..++..+.....
T Consensus       437 ~--------~~-----~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          437 D--------TY-----LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             T--------TT-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             H--------HH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            0        11     12345677777778899999999999988875543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=4.1e-15  Score=136.28  Aligned_cols=330  Identities=13%  Similarity=0.125  Sum_probs=245.8

Q ss_pred             ChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCCC
Q 037142           18 AVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        18 ~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      .|+.|+.-+++ .-.+=|..|+..|..++.+   ++..+. .++++.|+..|+++ .|.++.+.++.+|.++....+...
T Consensus        22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~   97 (651)
T 3grl_A           22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE   97 (651)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence            46777777765 5678899999999999864   445554 45589999999765 588999999999988776542210


Q ss_pred             -------------------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCch-HHHHHHH-hCcHHHHHHhcC
Q 037142           96 -------------------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKND-EIQAVIE-AGVCPRLVKLLG  154 (383)
Q Consensus        96 -------------------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~-~~~i~~l~~~L~  154 (383)
                                         .....+.++.|+.++++.+..+|.+++.+|..++.. .++ ..+.+.. .++++.|+.+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~-r~~~~Q~~Il~~p~gi~~Lv~lL~  176 (651)
T 3grl_A           98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ-LGPQVQQIILVSPMGVSRLMDLLA  176 (651)
T ss_dssp             ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-SHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred             ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc-CcHHHHHHHHhCcccHHHHHHHHh
Confidence                               011257899999999999999999999999999987 444 4455553 489999999999


Q ss_pred             CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccch----hHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 037142          155 HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKT----SIKNYACWIISNITAGNREQIQAVIDAGL  230 (383)
Q Consensus       155 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~----~~~~~a~~~l~nl~~~~~~~~~~~~~~~~  230 (383)
                      ++..-++..++..|..++.++.+..+.+.-.|+++.|+.++... ..    .+...++.++.|+...++.+...+.+.++
T Consensus       177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E-g~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~  255 (651)
T 3grl_A          177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE-GNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY  255 (651)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc-CCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            99999999999999999999987777666679999999999865 33    67888999999999999888888889999


Q ss_pred             hHHHHHHhhcCch------hHHHH---HHHHHHHhcCCC-----CHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHH
Q 037142          231 IGPLVNLLQNAVF------YIKKE---AAWAISNATFGG-----THEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLK  294 (383)
Q Consensus       231 l~~L~~ll~~~~~------~v~~~---a~~~l~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~  294 (383)
                      ++.|..++..+..      +...+   +..++.-++..+     ++.+...+.+.|+++.|++++...  +..++..|+.
T Consensus       256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~  335 (651)
T 3grl_A          256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN  335 (651)
T ss_dssp             GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence            9999999874321      12222   344455555542     235677888999999999988765  5689999999


Q ss_pred             HHHHHHHhchhcccCcCCCC--cccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCC
Q 037142          295 ALENILKVGEAEKNTDTDIG--DVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       295 ~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ++..+++.....|..+.+..  ..+      ...-.+..|..+.++ +..+++-.|...+..|+.+.+
T Consensus       336 tla~~irgN~~~Q~~fa~~~vp~~~------~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~  397 (651)
T 3grl_A          336 TVSEVIRGCQVNQDYFASVNAPSNP------PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ  397 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHCEESSSS------CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCHHHHHHHhhccCCCCC------CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence            99999887665553321000  000      001123334444544 557888888999999988765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.70  E-value=2e-15  Score=143.54  Aligned_cols=306  Identities=11%  Similarity=0.099  Sum_probs=229.0

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      ..+++.+.++++++++++|..|+++|+.++...+ +.+.......+++.+..++ +++++.++..++++|+.++..-+  
T Consensus       280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--  356 (588)
T 1b3u_A          280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--  356 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--
T ss_pred             hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--
Confidence            3567888888988899999999999998885332 2111112235577888888 68889999999999999975321  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .......++|.+..++++++++++..++.++..++.. ...  ... ...++|.+..++.++++.++..++.++..++..
T Consensus       357 ~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~~~--~~~-~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~  432 (588)
T 1b3u_A          357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV-IGI--RQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH-SCH--HHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-cCH--HHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            1122356889999999999999999999999988864 221  111 124788899999999999999999999998854


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      .+..   .....+++.+...+.++ +..+|..++.+++.++...+.   ......++|.+..++.++++.+|..++++++
T Consensus       433 ~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~  505 (588)
T 1b3u_A          433 LGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCIN  505 (588)
T ss_dssp             HCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred             cCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            2211   22335678888999888 899999999999999753211   1123457888888888889999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      .++...+.+    .....+++.|..++++++++++..+++++..+....+..                +......+.|..
T Consensus       506 ~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------~~~~~~~p~l~~  565 (588)
T 1b3u_A          506 VLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------TLQSEVKPILEK  565 (588)
T ss_dssp             HHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------HHHHHHHHHHHH
T ss_pred             HHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------hhHHHHHHHHHH
Confidence            998542211    122358999999999999999999999999998653321                112345677888


Q ss_pred             HhcCCCHHHHHHHHHHHHHhc
Q 037142          335 LQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      +.++++.+|+..|..++..+-
T Consensus       566 l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          566 LTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTT
T ss_pred             HcCCCchhHHHHHHHHHHHhh
Confidence            889999999999999988654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.68  E-value=2.3e-16  Score=156.49  Aligned_cols=277  Identities=15%  Similarity=0.191  Sum_probs=203.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +++.|+++++++++++|..|+++|..+....+......+ .++++.++..+ .+++..++..++++|..++...+.....
T Consensus       175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~  252 (852)
T 4fdd_A          175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLP  252 (852)
T ss_dssp             HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            577788888889999999999999988765432111111 24567788888 6788999999999999999865433223


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHH---hCcHHHHHHhc-----------CC--------
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE---AGVCPRLVKLL-----------GH--------  155 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~i~~l~~~L-----------~~--------  155 (383)
                      ...++++.+..++.+.+++++..+++++..++.. .. . .....   ..++|.++..+           .+        
T Consensus       253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            3467899999999999999999999999999975 21 1 11111   13567777776           23        


Q ss_pred             ---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142          156 ---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG  232 (383)
Q Consensus       156 ---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  232 (383)
                         ++..++..+..+|..++...++.   ++. .+++.+...+.++ ++.+|..|++++++++.+.++.... .-.++++
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~  403 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP-YLPELIP  403 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence               23467889999999998654321   222 4677777888888 9999999999999999887654433 2355788


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142          233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       233 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      .+...+.++++.+|..|+|++++++.......... .-.++++.|+..+.++++.++..|+++|.++++.....
T Consensus       404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            99999999999999999999999985311000000 11246888999998899999999999999999876543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.67  E-value=3.6e-15  Score=136.62  Aligned_cols=288  Identities=13%  Similarity=0.141  Sum_probs=222.1

Q ss_pred             HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChH-----------------HHHHHH-hcCChHHHHHHhcCCCC
Q 037142           14 VDHGAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPR-----------------FRDLVL-GEAALIPLLTQLNNHEN   73 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~-----------------~~~~~~-~~g~i~~L~~~L~~~~~   73 (383)
                      +-.++++.|+..|+.  .|.++...++.+|.++...+++                 +.+.++ +.+.++.|+.+| ++.+
T Consensus        57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~d  135 (651)
T 3grl_A           57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL-EEFD  135 (651)
T ss_dssp             HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHT-TCCC
T ss_pred             hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHh-cCcc
Confidence            446789999999975  7899999999999887654322                 223333 457799999999 7889


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCChhh---hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142           74 LSMKRIATWTLSNLCGGKPRPIFDQ---VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV  150 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~  150 (383)
                      ..++..++.+|..++...+...+..   ..++++.|+.+|+++...+|..++..|..++.+ +.+..+.+.-.|+++.++
T Consensus       136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQklVAFEnaFe~Lf  214 (651)
T 3grl_A          136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKIVAFENAFERLL  214 (651)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHHHHHhccHHHHH
Confidence            9999999999999998875532222   258999999999999999999999999999998 555555555569999999


Q ss_pred             HhcCCCC----hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchh------HHHH---HHHHHHHHhcC
Q 037142          151 KLLGHPS----QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTS------IKNY---ACWIISNITAG  217 (383)
Q Consensus       151 ~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~------~~~~---a~~~l~nl~~~  217 (383)
                      .++..+.    ..+...++.++.+|...+..+...+.+.|+++.|.+++..+ .+.      ...+   ++.++.-++..
T Consensus       215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~-~~~~~W~~Qk~~N~~~~L~iIrlLv~~  293 (651)
T 3grl_A          215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG-DENSGWSAQKVTNLHLMLQLVRVLVSP  293 (651)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC-SCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC-ccccccHHHHHHHHHHHHHHHHHHhCC
Confidence            9998744    37889999999999999988888889999999999999755 221      2222   55666666654


Q ss_pred             ------CHHHHHHHHhcCChHHHHHHhhcC--chhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---------ChHHHHhh
Q 037142          218 ------NREQIQAVIDAGLIGPLVNLLQNA--VFYIKKEAAWAISNATFGGTHEQIKYLEREG---------CIKPLCDL  280 (383)
Q Consensus       218 ------~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~---------~i~~L~~l  280 (383)
                            ...+...+.+.|+++.+++++...  ...++.+|..+++.+..+ ++.....+.+..         ++..|+.+
T Consensus       294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg-N~~~Q~~fa~~~vp~~~~~p~li~lL~~~  372 (651)
T 3grl_A          294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG-CQVNQDYFASVNAPSNPPRPAIVVLLMSM  372 (651)
T ss_dssp             TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence                  234566677999999999998765  678999999999999887 466666666543         23334444


Q ss_pred             cCCC-CHHHHHHHHHHHHHHHHhchh
Q 037142          281 LLCP-DPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       281 l~~~-~~~v~~~al~~l~~l~~~~~~  305 (383)
                      +.+. ..++|..++.++..++.....
T Consensus       373 ~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          373 VNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hcccccHHHHHHHHHHHHHHHhCCHH
Confidence            5554 568899999999999876653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.66  E-value=3.6e-15  Score=141.86  Aligned_cols=306  Identities=12%  Similarity=0.066  Sum_probs=226.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      .++|.+.++++++++.+|..|+.+|+.++.....   ......+++.+++++ +++++.++..++++++.++...+....
T Consensus       242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            3667777777777788888888888877742101   112235578888998 678899999999999999876532211


Q ss_pred             --hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           97 --DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        97 --~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                        .....++|.+..++++.++.++..+++++..++.. -..  .... ..++|.+..++++++++++..++.++..++..
T Consensus       318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~-~~~--~~~~-~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~  393 (588)
T 1b3u_A          318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI-LGK--DNTI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH-HCH--HHHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hhH--hHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence              34577899999999999999999999999999854 111  1122 23789999999999999999999999888754


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      ....   .....+++.+..++.+. +..+|..++.+++.++..-+.   ..+...+++.+..++.+++..+|..|+.+++
T Consensus       394 ~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~  466 (588)
T 1b3u_A          394 IGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLK  466 (588)
T ss_dssp             SCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             cCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3211   11235678888888887 899999999999998742100   1122346778888888899999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      .++...+++.    ....+++.|..++.++++.++..+++++..+....+..                ......++.|..
T Consensus       467 ~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~  526 (588)
T 1b3u_A          467 KLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLR  526 (588)
T ss_dssp             HHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHH
T ss_pred             HHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHh
Confidence            9986533322    12358889999998899999999999999998754322                112345688888


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCC
Q 037142          335 LQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      ++.+++++|+..+...+..++..
T Consensus       527 ~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          527 MAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             hCCCCCchHHHHHHHHHHHHHHH
Confidence            89999999999999999888764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.65  E-value=2.9e-15  Score=142.12  Aligned_cols=263  Identities=16%  Similarity=0.141  Sum_probs=200.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +++.+++++.+++..++..+..++.+++...++..     .-++..+.+.| +++++.++..|+.+++++..      ..
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL-~~~n~~ir~~AL~~L~~i~~------~~  117 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDC-EDPNPLIRALAVRTMGCIRV------DK  117 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGS-SSSSHHHHHHHHHHHHTCCS------GG
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCh------HH
Confidence            46677888888999999999999998886544432     13456777778 67899999999999999863      23


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....+++.+.+++.+.++.+|+.|++++..+... .++...   +.++++.+..+|.++++.|+..|+.+|..++..++.
T Consensus       118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~  193 (591)
T 2vgl_B          118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN  193 (591)
T ss_dssp             GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence            5567888899999999999999999999999986 444332   235789999999999999999999999999977654


Q ss_pred             cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       178 ~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                      ....-...+.+..++..+.+. ++..+...+++++.++..++....     .+++.+..++++.++.|+.+|++++..+.
T Consensus       194 ~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          194 SNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred             ccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            311111224466777777777 889999999999988866554433     34667777888899999999999999997


Q ss_pred             CCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          258 FGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       258 ~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ...  +++..+.+. .++.+.|+.++. +++.++..++.++..+....+
T Consensus       268 ~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p  314 (591)
T 2vgl_B          268 ELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRP  314 (591)
T ss_dssp             CSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCC
T ss_pred             hccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCh
Confidence            431  223333322 346778887764 889999999999999987644

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.60  E-value=1e-14  Score=138.32  Aligned_cols=257  Identities=16%  Similarity=0.135  Sum_probs=172.1

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-Chh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-IFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~   97 (383)
                      ++.+.+++.++++.+|..|++++.++...+++...   +.+.++.+..+| +++++.++..|+++|..++.+.+.. ...
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~  198 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLD  198 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchh
Confidence            45688899999999999999999999876554322   235678899999 6889999999999999999887543 233


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC---
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG---  174 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~---  174 (383)
                      ...+.++.+++.+.+.++-.+..++.++..++.. ++...     ..+++.+..++++.++.|+..|++++..+...   
T Consensus       199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~  272 (591)
T 2vgl_B          199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK  272 (591)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred             ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence            3456677888888888888888899999888855 33222     23678889999999999999999999998742   


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      +++..+.+. ..+.+.++.++ ++ ++.+|..++..++.++...++....     .+..+. .+.+.+..+|..|++++.
T Consensus       273 ~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          273 DSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             TTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHH
Confidence            222222111 23456666555 45 8899999999999987543221110     011111 111223556666666666


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      +++...+   ...     +++.|...+.+.+.+++..+++++.+++..
T Consensus       344 ~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~  383 (591)
T 2vgl_B          344 RLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK  383 (591)
T ss_dssp             HTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence            6654322   222     344455555555666666666666665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.59  E-value=8.2e-14  Score=114.27  Aligned_cols=188  Identities=21%  Similarity=0.245  Sum_probs=159.4

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      .+.++.|++.|.++++.+|..|++.|+.+..           .+.++.|++++ .+++..++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4678999999999999999999999998864           25688999999 67899999999999999863      


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                          ...++.+..++.++++.++..++++|..+...            +.++.+..++.++++.++..++.+|+.+..  
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                34789999999999999999999999998743            367899999999999999999999999842  


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHH
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISN  255 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~  255 (383)
                               ...++.|..++.++ ++.++..++.+|+.+..           ...++.|..++.++++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                     24688999999888 99999999999999842           2356778888999999999999999999


Q ss_pred             hcCCC
Q 037142          256 ATFGG  260 (383)
Q Consensus       256 l~~~~  260 (383)
                      +....
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            87653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.59  E-value=1e-13  Score=131.90  Aligned_cols=291  Identities=14%  Similarity=0.104  Sum_probs=221.2

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      ....++++.+++.+.+..+.-.+..++..+++.....     +..+.+-| +++++.++..|+++++++...      ..
T Consensus        72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~-----in~l~kDL-~~~n~~vr~lAL~~L~~i~~~------~~  139 (618)
T 1w63_A           72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLM-----TNCIKNDL-NHSTQFVQGLALCTLGCMGSS------EM  139 (618)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHH-SCSSSHHHHHHHHHHHHHCCH------HH
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHH-----HHHHHHhc-CCCCHhHHHHHHHHHHhcCCH------HH
Confidence            4455666777888888888888888887766543333     56788888 688999999999999999842      34


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ...+++.+.+++.+.++.+|+.|+.++.++... .++...     ++++.+..+|.++|+.|+..|+.+|..++..+++.
T Consensus       140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence            577899999999999999999999999999986 444332     47888899999999999999999999998765432


Q ss_pred             ccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-----
Q 037142          179 TLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-----  239 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-----  239 (383)
                      ...+.  ..++.++.+|.+              ..++..+...+.+++.++..++...     ..+.+.|..++.     
T Consensus       214 ~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          214 LAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS  286 (618)
T ss_dssp             HHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred             HHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence            11121  567777776653              1278899999999999998776543     335556666653     


Q ss_pred             -cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccH
Q 037142          240 -NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQ  318 (383)
Q Consensus       240 -~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~  318 (383)
                       +.+..+..+|+.++..+...  +....     ..++.|..++.++++.++..|+.+|..+....+..            
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~~--~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~------------  347 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKSE--SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA------------  347 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCCC--HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH------------
T ss_pred             cchHHHHHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH------------
Confidence             24668999999999998643  33222     25778888899999999999999999998753321            


Q ss_pred             HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          319 YAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       319 ~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                          +.  .....+..++.+++..|+.+|.+++..+....+
T Consensus       348 ----~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n  382 (618)
T 1w63_A          348 ----VQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN  382 (618)
T ss_dssp             ----HG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred             ----HH--HHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence                21  234567788889999999999999998888765

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.58  E-value=2.5e-13  Score=110.51  Aligned_cols=185  Identities=22%  Similarity=0.259  Sum_probs=159.0

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      +..+.++++|+++++.+|..|+++|+.+..           .+.++.|++.| .+++..++..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            567889999999999999999999998763           24588999999 68899999999999999863       


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                         ...++.+..++.++++.++..++++|..+...            ..++.+..++.++++.++..++++|+.+..   
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence               24789999999999999999999999998643            367889999999999999999999999842   


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                              ...++.|..++.++ ++.++..++++|+.+.  .         ...++.|..++.++++.+|..|..+|..+
T Consensus       137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                    24688999999988 9999999999999983  2         22567788888999999999999999987


Q ss_pred             cC
Q 037142          257 TF  258 (383)
Q Consensus       257 ~~  258 (383)
                      ..
T Consensus       197 ~~  198 (201)
T 3ltj_A          197 KS  198 (201)
T ss_dssp             C-
T ss_pred             Hh
Confidence            53

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.56  E-value=1.3e-13  Score=118.38  Aligned_cols=229  Identities=13%  Similarity=0.069  Sum_probs=176.3

Q ss_pred             hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchH
Q 037142           57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE  136 (383)
Q Consensus        57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  136 (383)
                      ..+.++.|+..| .++++.++..|+++|+++..          ...++.+..++.++++.++..++++|..+... . ..
T Consensus        21 ~~~~i~~L~~~L-~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~-~~   87 (280)
T 1oyz_A           21 KKLNDDELFRLL-DDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K-KC   87 (280)
T ss_dssp             HTSCHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T-TT
T ss_pred             HHhhHHHHHHHH-HcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c-cc
Confidence            457799999999 67899999999999999873          35889999999999999999999999998754 2 22


Q ss_pred             HHHHHHhCcHHHHH-HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          137 IQAVIEAGVCPRLV-KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       137 ~~~~~~~~~i~~l~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      ...     +++.+. .++.++++.++..++++|+.+....+..     ....++.+...+.++ ++.+|..++++|+++.
T Consensus        88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK-STNVRRATAFAISVIN  156 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC-
T ss_pred             chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcC
Confidence            111     344454 3467889999999999999997544321     124688899999998 9999999999999875


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142          216 AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA  295 (383)
Q Consensus       216 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~  295 (383)
                      .           ...++.|..++.++++.+|..|+++|+.+... ++         ..++.|..+++++++.++..++++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~---------~~~~~L~~~l~d~~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS---------DIRDCFVEMLQDKNEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3           35889999999999999999999999998533 22         246788889999999999999999


Q ss_pred             HHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       296 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      |.++-.                        ...++.|..++.+++  ++..+...+..+-.
T Consensus       216 L~~~~~------------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          216 LSYRKD------------------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHTTC------------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             HHHhCC------------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            987641                        123455555555443  77777777776643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.54  E-value=3.8e-13  Score=110.31  Aligned_cols=189  Identities=17%  Similarity=0.189  Sum_probs=158.0

Q ss_pred             cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           58 EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        58 ~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                      .+.++.|+..| ++++..++..+++.|+.+..          ...++.|.+++.++++.++..++++|..+...      
T Consensus        18 ~~~~~~L~~~L-~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------   80 (211)
T 3ltm_A           18 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------   80 (211)
T ss_dssp             GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------
T ss_pred             HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence            35689999999 68899999999999998764          35889999999999999999999999998743      


Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                            +.++.++..|.++++.++..++.+|+.+..           ...++.|..++.++ ++.++..++++|+.+.. 
T Consensus        81 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           81 ------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-
Confidence                  367899999999999999999999998852           24688999999888 99999999999999842 


Q ss_pred             CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          218 NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       218 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                                ...++.|..++.++++.+|..|+++|+.+..   +         ..++.|..+++++++.++..|..+|.
T Consensus       142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~  199 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  199 (211)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                      3468889999999999999999999999953   1         24667788888899999999999999


Q ss_pred             HHHHhch
Q 037142          298 NILKVGE  304 (383)
Q Consensus       298 ~l~~~~~  304 (383)
                      ++.....
T Consensus       200 ~~~~~~~  206 (211)
T 3ltm_A          200 THKSFNH  206 (211)
T ss_dssp             C------
T ss_pred             hcCCCCC
Confidence            8876544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.52  E-value=1.6e-13  Score=136.47  Aligned_cols=316  Identities=13%  Similarity=0.175  Sum_probs=212.2

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC--C
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR--P   94 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~--~   94 (383)
                      +++.+.+.+.+.++.+|+.|+++++.++.... +.....+ ..+++.++..+ .++++.++..++|++++++...+.  .
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence            44555666778889999999999999997642 3222222 24678888888 677899999999999999865311  1


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC---chHHHHHHHhCcHHHHHHhcCCC--ChhhHHHHHHHHh
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK---NDEIQAVIEAGVCPRLVKLLGHP--SQSVLTQALHTVG  169 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~  169 (383)
                      .......+++.+++.+.++ +.++..+++++.+++....   ......... .+++.++..+.+.  ++.++..++.+++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            2234577899999998876 8999999999999886411   122222222 3678888888853  3789999999999


Q ss_pred             hhhcCCCccccceecCCChHHHHHhhcc--------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          170 NIARGDYSQTLYIINCGALPYLLGLLID--------------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       170 ~l~~~~~~~~~~l~~~~~i~~l~~ll~~--------------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      .++...+......+. .+++.++..+..              .....++..++.++++++...+...... -..+++.+.
T Consensus       526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~  603 (861)
T 2bpt_A          526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFF  603 (861)
T ss_dssp             HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHH
T ss_pred             HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHH
Confidence            998765543222222 345555555542              1134577889999999886443321111 124667777


Q ss_pred             HHhhcCch-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCC
Q 037142          236 NLLQNAVF-YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIG  314 (383)
Q Consensus       236 ~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~  314 (383)
                      ..+.+.+. .++..++.+++.++.........++-.  +++.+...+.+++++++..++.++..++...+..        
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------  673 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSLEED--------  673 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--------
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--------
Confidence            77877766 899999999999876533233333333  7888999888888899999999999998765432        


Q ss_pred             cccHHHHHHHHhccHHHHHHHhcCCC--HHHHHHHHHHHHHhc
Q 037142          315 DVNQYAQLVEEAKGLEKIENLQRHDN--YEIHEKSAKILETYW  355 (383)
Q Consensus       315 ~~~~~~~~l~~~~~~~~L~~l~~~~~--~~v~~~a~~~l~~~~  355 (383)
                       ..++..     ..++.+.+.+.+++  .+++..+..++..+.
T Consensus       674 -~~~~~~-----~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~  710 (861)
T 2bpt_A          674 -FRRYSD-----AMMNVLAQMISNPNARRELKPAVLSVFGDIA  710 (861)
T ss_dssp             -GHHHHH-----HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred             -ccchHH-----HHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence             111222     22455555555554  667777766664443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.51  E-value=8.8e-13  Score=107.20  Aligned_cols=184  Identities=18%  Similarity=0.195  Sum_probs=156.7

Q ss_pred             CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           59 AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        59 g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      +..+.+++.| ++++..++..++++|+.+..          ...++.|.+++.++++.++..++++|..+...       
T Consensus        14 ~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------   75 (201)
T 3ltj_A           14 EKVEMYIKNL-QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------   75 (201)
T ss_dssp             HHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred             cchHHHHHHh-cCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence            4468899999 78899999999999998764          24789999999999999999999999988632       


Q ss_pred             HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 037142          139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                           ..++.+...|.++++.++..++++|+.+..           ...++.+..++.++ ++.+|..++++|+.+..  
T Consensus        76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC--
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC--
Confidence                 367899999999999999999999998742           24688899999888 99999999999999853  


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142          219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN  298 (383)
Q Consensus       219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~  298 (383)
                               ...++.|..++.++++.+|..|+++|+.+..   ++         .++.|..+++++++.++..|..+|.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---------HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---------HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                     3578889999999999999999999999942   22         46677778888999999999999876


Q ss_pred             HH
Q 037142          299 IL  300 (383)
Q Consensus       299 l~  300 (383)
                      +-
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            53

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.51  E-value=2.8e-13  Score=124.79  Aligned_cols=315  Identities=12%  Similarity=0.060  Sum_probs=220.0

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC--ChhHHHHHHHHHHhhcCCC-CCC
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE--NLSMKRIATWTLSNLCGGK-PRP   94 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~--~~~~~~~a~~~L~~l~~~~-~~~   94 (383)
                      -..+++.|.++++.+ ..++.+++.++... +..    .-.+.++.|++.+ +++  +..++..++.+|..++.+. +..
T Consensus        92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~l~~~~~~~~  165 (462)
T 1ibr_B           92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (462)
T ss_dssp             HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence            345677788877788 88899999988532 110    1136688899999 455  8899999999999999754 222


Q ss_pred             ChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142           95 IFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                      .......+++.+.+.+.+.  ++.++..+++++.++... ..+... .....-+++.+...+.++++.++..++.+|..+
T Consensus       166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF-TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT-THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            2233467888999999887  799999999999997754 222111 111111466777788889999999999999999


Q ss_pred             hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHH-----------------HHH---hcCCh
Q 037142          172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQ-----------------AVI---DAGLI  231 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~-----------------~~~---~~~~l  231 (383)
                      +...+......+..++++.++..+.+. ++.++..++..+..++........                 .++   -..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence            976654333233326777788888777 899999999999888753210000                 000   02345


Q ss_pred             HHHHHHhhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          232 GPLVNLLQN-------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       232 ~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      |.++..+..       .+..+|..|+.+|..++...+.....     .+++.+...+.++++.++..++.++..++....
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence            666666643       24579999999999998654322222     367788888899999999999999999987433


Q ss_pred             hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ....           ...+  ...++.+..++.++++.|+..|..++.++...-.
T Consensus       399 ~~~~-----------~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          399 PSQL-----------KPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             TTTT-----------CTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHH-----------HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            1110           0011  3467888899999999999999999998876543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.49  E-value=1.5e-13  Score=126.58  Aligned_cols=282  Identities=13%  Similarity=0.118  Sum_probs=195.9

Q ss_pred             CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~   92 (383)
                      ++++.|++.+.++  ++.++..|+.+|+.++.+. ++...... ..+++.++..+.+.. +..++..++++++++.....
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5788889999887  8999999999999998632 22111111 135677888884332 78999999999999764321


Q ss_pred             -C-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           93 -R-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        93 -~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                       . ........+++.+...+.+.+++++..+++++..++.. ..+........++++.++..+++.++.++..++..+..
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence             0 01111123577777778888999999999999999976 33322222221577888888888999999999999988


Q ss_pred             hhcCCC-----------------ccccceec---CCChHHHHHhhccc------cchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          171 IARGDY-----------------SQTLYIIN---CGALPYLLGLLIDN------HKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       171 l~~~~~-----------------~~~~~l~~---~~~i~~l~~ll~~~------~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      ++....                 .....+.+   ..+++.++..+...      .+..+|..|..++..++...++   .
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~  362 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---D  362 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---T
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---H
Confidence            875420                 00000111   23455566666432      1457899999999998864332   1


Q ss_pred             HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++ ..+++.+...+.++++.+|..|+.+++.++....++.....+ ..+++.++..+.++++.++..|+++|.+++....
T Consensus       363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            11 246677788888899999999999999999864422221111 4588999999999999999999999999998654


Q ss_pred             h
Q 037142          305 A  305 (383)
Q Consensus       305 ~  305 (383)
                      .
T Consensus       441 ~  441 (462)
T 1ibr_B          441 E  441 (462)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.48  E-value=1.3e-12  Score=124.44  Aligned_cols=257  Identities=15%  Similarity=0.183  Sum_probs=187.6

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      ++..|.+-|.++++.+|..|+++|+++..  ++...     .+++.+.+++ .++++.+++.|+.++.++....|    .
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p----~  175 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP----E  175 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG----G
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh----H
Confidence            45778888899999999999999999983  34333     3467888999 67899999999999999998654    2


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------------CChhhHH
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---------------PSQSVLT  162 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---------------~~~~v~~  162 (383)
                      ...+.++.+..++.+.++.++..+++++..++.. +++....+ . .++|.++..|.+               .++..+.
T Consensus       176 ~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~-~~~~~~~~-~-~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~  252 (618)
T 1w63_A          176 LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER-SPDMLAHF-R-KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV  252 (618)
T ss_dssp             GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS-HHHHHHHH-H-TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh-ChHHHHHH-H-HHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence            3457888899999999999999999999999976 33322222 2 466777766542               4677778


Q ss_pred             HHHHHHhhhhcCCCccccceec-------------------------------------CCChHHHHHhhccccchhHHH
Q 037142          163 QALHTVGNIARGDYSQTLYIIN-------------------------------------CGALPYLLGLLIDNHKTSIKN  205 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~-------------------------------------~~~i~~l~~ll~~~~~~~~~~  205 (383)
                      .++++|+.++..++...+.+.+                                     ..+++.+..++.+. ++.+|.
T Consensus       253 ~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~  331 (618)
T 1w63_A          253 RILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRY  331 (618)
T ss_dssp             HHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHH
Confidence            8888888877654321111000                                     01355666777777 888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD  285 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  285 (383)
                      .|+.+++.++...+...     ....+.++.++.+++..+|..|..++..++...+   ...     +++.|...+.+.+
T Consensus       332 ~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n---v~~-----iv~eL~~~l~~~d  398 (618)
T 1w63_A          332 VALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN---IRG-----MMKELLYFLDSCE  398 (618)
T ss_dssp             HHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS---THH-----HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc---HHH-----HHHHHHHHHHhCC
Confidence            88888888876443322     2245678888888899999999999999987643   222     3456666666788


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 037142          286 PQIVTVCLKALENILKVG  303 (383)
Q Consensus       286 ~~v~~~al~~l~~l~~~~  303 (383)
                      .+++..++.+|..++...
T Consensus       399 ~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          399 PEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             HHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999998753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.46  E-value=8.4e-12  Score=124.29  Aligned_cols=321  Identities=12%  Similarity=0.087  Sum_probs=218.0

Q ss_pred             CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCC-ChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHE-NLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~-~~~~~~~a~~~L~~l~~~~~   92 (383)
                      .+++.|.+.+.++  ++.++..++.+|+.++... ++..... -..+++.+.+.+.+.. +..++..++.++.+++..-+
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5678888899888  8999999999999998532 2211111 1234566777774332 68899999999999875421


Q ss_pred             C--CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           93 R--PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        93 ~--~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                      .  ........+++.+...+.+.+.+++..++.++..++.. ..+.........+++.++..+.+.++.++..++..+..
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~  285 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            0  01111124678888888888999999999999999976 44444444443688888888889999999999999988


Q ss_pred             hhcCCC-----------------ccccceec---CCChHHHHHhhcc------ccchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          171 IARGDY-----------------SQTLYIIN---CGALPYLLGLLID------NHKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       171 l~~~~~-----------------~~~~~l~~---~~~i~~l~~ll~~------~~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      ++....                 ........   ..+++.++..+..      +.+..+|..+..++..++...++   .
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~  362 (876)
T 1qgr_A          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---D  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---G
T ss_pred             HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---h
Confidence            875320                 00000100   2345566666642      11568999999999988753321   1


Q ss_pred             HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++ ..+++.+...+.++++.+|..|+++++.++....++...... ..+++.++..+.++++.++..|++++.+++....
T Consensus       363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            11 235666777777889999999999999999876544433322 3489999999999999999999999999998754


Q ss_pred             hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      .....      .+.+.      ..++.+...+.++ +.++..|..++..+...
T Consensus       441 ~~~~~------~~~l~------~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          441 EAAIN------DVYLA------PLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             GGTSS------TTTHH------HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             hhccc------HHHHH------HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            32100      01112      2235555666554 77888888777766643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.43  E-value=5.3e-12  Score=125.49  Aligned_cols=275  Identities=16%  Similarity=0.227  Sum_probs=192.7

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC------hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAES------PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~------~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~   90 (383)
                      .+++.+++.+.++++.+|..++|+++.++...      ..+.     ..+++.++..+ ++. +.++..+++++.+++..
T Consensus       411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-----~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-----PGVVQACLIGL-QDH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-----HHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-----HHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHh
Confidence            47888999999999999999999999998531      1111     23467788888 444 88999999999999865


Q ss_pred             CC----CCChhhhhchhHHHHHhhccCC--HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---------
Q 037142           91 KP----RPIFDQVRPCLPTLAQLVHSND--EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---------  155 (383)
Q Consensus        91 ~~----~~~~~~~~~~i~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---------  155 (383)
                      ..    ..-......+++.+.+.+.+.+  +.++..++.++..++.. ........... ++|.++..+.+         
T Consensus       484 ~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~-~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~i~  561 (861)
T 2bpt_A          484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY-ATDTVAETSAS-ISTFVMDKLGQTMSVDENQL  561 (861)
T ss_dssp             HSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH-CCGGGHHHHHH-HHHHHHHHHHHHTTSCGGGC
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH-cchhhHHHHHH-HHHHHHHHHHHHHhhhcccC
Confidence            32    1112334677888888888544  78999999999999876 33333333332 56666666542         


Q ss_pred             ------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 037142          156 ------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKT-SIKNYACWIISNITAGNREQIQAVIDA  228 (383)
Q Consensus       156 ------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl~~~~~~~~~~~~~~  228 (383)
                            ....++..++.+|..++...+........ .+++.+...+.+. +. .++..++.+++.++..........+ .
T Consensus       562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~  638 (861)
T 2bpt_A          562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-E  638 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-H
Confidence                  13457788999999998665532222222 4667777778776 56 8999999999998753322222222 3


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhchh
Q 037142          229 GLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPD--PQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       229 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~l~~l~~~~~~  305 (383)
                      .+++.+...+.++++.+|..|+.+++.++...+.....++  ..+++.+++.+.+++  ++++..++.++..++...+.
T Consensus       639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence            3788888888888889999999999998865432222222  246778888887654  78999999999999986543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.42  E-value=1.7e-11  Score=122.03  Aligned_cols=276  Identities=12%  Similarity=0.099  Sum_probs=195.2

Q ss_pred             CChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCChHHH-HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142           17 GAVPIFVKLLASP--SDDIRMQSVWALGNIAAESPRFR-DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        17 g~i~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      .+++.+.+.+.++  ++++|..|++++..++..-.... .......+++.+...+ .+.+.+++..++.++..++...+.
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhHH
Confidence            3566677778775  68999999999999875322111 0011112466677777 677889999999999999976543


Q ss_pred             CChhhhh-chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc---------------------hHHHHHHHhCcHHHHHH
Q 037142           94 PIFDQVR-PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN---------------------DEIQAVIEAGVCPRLVK  151 (383)
Q Consensus        94 ~~~~~~~-~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~---------------------~~~~~~~~~~~i~~l~~  151 (383)
                      .-..... .+++.+...+.+.++.++..++.++..++.. ..                     ....... ..+++.++.
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~  328 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQ  328 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHH
Confidence            3333344 7889999988888999999999999888753 10                     0111111 235777778


Q ss_pred             hcC-------CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-HHHH
Q 037142          152 LLG-------HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-EQIQ  223 (383)
Q Consensus       152 ~L~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-~~~~  223 (383)
                      .+.       ++++.++..+..++..++...++   .++. .+++.+...+.+. ++.+|..++++++.++.+.. +...
T Consensus       329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~  403 (876)
T 1qgr_A          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLK  403 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             HhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHH
Confidence            775       34578999999999998865432   1222 4566677777777 89999999999999998653 3333


Q ss_pred             HHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHH--HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          224 AVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHE--QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       224 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      ..+ ..+++.++..+.++++.+|..|+|++++++....+.  ....+  ..+++.|+..+.++ +.++..+++++.+++.
T Consensus       404 ~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          404 PLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence            332 447889999999999999999999999998653211  01111  13677888888774 8899999999999998


Q ss_pred             hch
Q 037142          302 VGE  304 (383)
Q Consensus       302 ~~~  304 (383)
                      ...
T Consensus       480 ~~~  482 (876)
T 1qgr_A          480 AAY  482 (876)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.37  E-value=2e-10  Score=109.03  Aligned_cols=296  Identities=11%  Similarity=0.109  Sum_probs=215.1

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +....++++.+++...+..+.-++..++..+++....+     +..+.+-+ +++++.++..|+.+++++...      .
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl-~~~n~~ir~lALr~L~~i~~~------e  142 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDL-ASRNPTFMGLALHCIANVGSR------E  142 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHH-HSCCHHHHHHHHHHHHHHCCH------H
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhc-CCCCHHHHHHHHHHhhccCCH------H
Confidence            46677788889999999999999999998777654333     46677778 688999999999999999652      4


Q ss_pred             hhhchhHHHHHhh--ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           98 QVRPCLPTLAQLV--HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        98 ~~~~~i~~l~~ll--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      ....+++.+.+++  .+.++.+|+.|+.++..+... .++....   .++++.+..+|.++|+.|+..|+.++..++..+
T Consensus       143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            5678999999999  889999999999999999986 4443321   368999999999999999999999999998766


Q ss_pred             CccccceecCCChHHHH----Hhhccc-c-----------chhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHh
Q 037142          176 YSQTLYIINCGALPYLL----GLLIDN-H-----------KTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~----~ll~~~-~-----------~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      +....     ..++.++    .++... .           ++..+...+..++.++.. +++....+.+  +++.++..+
T Consensus       219 ~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~  291 (621)
T 2vgl_A          219 PEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA  291 (621)
T ss_dssp             HHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred             hHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence            53211     2344444    333221 1           578999999999988864 4455554433  344444332


Q ss_pred             ---------hcCc--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcc
Q 037142          239 ---------QNAV--FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK  307 (383)
Q Consensus       239 ---------~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~  307 (383)
                               ++.+  ..|..+|+.++..+..  .++....     ++..|..++.++++.++..++.+|..++...+.  
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--  362 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS--  362 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCC--cHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--
Confidence                     2223  3888999999999863  3444443     567888999889999999999999999864321  


Q ss_pred             cCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 037142          308 NTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                                  ...+..  ....+..++. +++..|+.++.+++..+....+
T Consensus       363 ------------~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N  401 (621)
T 2vgl_A          363 ------------HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDRSN  401 (621)
T ss_dssp             ------------HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH
T ss_pred             ------------HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh
Confidence                        011221  2345556566 7888888888888888776544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.27  E-value=7.6e-11  Score=121.52  Aligned_cols=311  Identities=12%  Similarity=0.100  Sum_probs=211.7

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP-   94 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-   94 (383)
                      .+++.+++.|.++++.+|..|+.+|+.++...++ ...     .+++.++..+ .+++..+|..++.+|+.++...+.. 
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            3577888999999999999999999999865433 222     2467788888 5677788999999999998654322 


Q ss_pred             -----ChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           95 -----IFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        95 -----~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                           .......++|.+...+. ++++.++..++.++..++.. ..+...... ..+++.++..+.++++.++..++.++
T Consensus       122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~-~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al  199 (1230)
T 1u6g_C          122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR-QGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIAL  199 (1230)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-TCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH-hHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                 12245789999999998 57899999999999999853 111111111 23678888999999999999999999


Q ss_pred             hhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHH
Q 037142          169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKE  248 (383)
Q Consensus       169 ~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~  248 (383)
                      +.++...++.   ++ ..+++.++..+.+..+..++..++.+++.++...+..... .-..+++.+...+.+.++.+|..
T Consensus       200 ~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~  274 (1230)
T 1u6g_C          200 GHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREY  274 (1230)
T ss_dssp             HHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHH
T ss_pred             HHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHH
Confidence            9998655432   22 2468888888876534567888899998887643221111 11457888888888889999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-------------------------------------CCHHHHHH
Q 037142          249 AAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-------------------------------------PDPQIVTV  291 (383)
Q Consensus       249 a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-------------------------------------~~~~v~~~  291 (383)
                      +..++..++.....+...++-  .+++.++..+..                                     ...+++..
T Consensus       275 a~~~l~~l~~~~~~~~~~~l~--~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~  352 (1230)
T 1u6g_C          275 CIQAFESFVRRCPKEVYPHVS--TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA  352 (1230)
T ss_dssp             HHHHHHHHHHCTTCCCHHHHH--HHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred             HHHHHHHHHHHChHHHHHhHH--HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence            999999988764322222221  245555555531                                     11346777


Q ss_pred             HHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          292 CLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       292 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      |+.++..++...+.            .+..++  ...++.+.....+.++.++..+...+..++.
T Consensus       353 A~~~l~~l~~~~~~------------~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          353 AAKCLDAVVSTRHE------------MLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             HHHHHHHHHTTCCT------------THHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchh------------HHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            88888887763221            122222  1234556666677788898888877766553

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.25  E-value=2.5e-10  Score=117.69  Aligned_cols=330  Identities=14%  Similarity=0.147  Sum_probs=214.8

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcC------------------------
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNN------------------------   70 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~------------------------   70 (383)
                      ..+++.+++.+.+.++++|..++.++..++...++ .+..+  ..+++.+++.+..                        
T Consensus       254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~  331 (1230)
T 1u6g_C          254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD  331 (1230)
T ss_dssp             TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-----------------------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence            35788889999888999999999999998864322 11111  1223444443321                        


Q ss_pred             ------------CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC-----
Q 037142           71 ------------HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK-----  133 (383)
Q Consensus        71 ------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-----  133 (383)
                                  +....++..++.++..++...+..-......++|.+...+.+.+..++..++.++..++....     
T Consensus       332 ~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~  411 (1230)
T 1u6g_C          332 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW  411 (1230)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc
Confidence                        112356888999999998754432234457788888888888889999999998887764200     


Q ss_pred             -------------chHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccc
Q 037142          134 -------------NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK  200 (383)
Q Consensus       134 -------------~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~  200 (383)
                                   ......... .+++.+...++++++.++..++.+++.++...+......+ ..+++.+...+.+. .
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~-~  488 (1230)
T 1u6g_C          412 LCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDK-S  488 (1230)
T ss_dssp             ---------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCS-S
T ss_pred             ccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCC-C
Confidence                         011122222 3566677779999999999999999999866443222111 24677778888776 4


Q ss_pred             h--hHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Q 037142          201 T--SIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH-------EQIKYLER  270 (383)
Q Consensus       201 ~--~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-------~~~~~l~~  270 (383)
                      +  .++..++..+..+... .++.....+ ..+++.++..+.+.+..++..|+.++..++....+       ....++  
T Consensus       489 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--  565 (1230)
T 1u6g_C          489 SSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--  565 (1230)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--
T ss_pred             CcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--
Confidence            3  8899999999988642 223222222 46899999999988899999999999888732111       111221  


Q ss_pred             cCChHHHHhhc--CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHH-----------------------
Q 037142          271 EGCIKPLCDLL--LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE-----------------------  325 (383)
Q Consensus       271 ~~~i~~L~~ll--~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------  325 (383)
                      ..+++.++..+  .+.+++++..++.++..++...+..-..     ..+.+...+.+                       
T Consensus       566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-----~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~  640 (1230)
T 1u6g_C          566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-----DLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL  640 (1230)
T ss_dssp             HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-----HHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcc
Confidence            12677888888  5678899999999999999876543211     11222222211                       


Q ss_pred             --------hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          326 --------AKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       326 --------~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                              ...++.|...+.+++..++..+...+..+....
T Consensus       641 ~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~  681 (1230)
T 1u6g_C          641 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY  681 (1230)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence                    123445555666778888888887777665443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.24  E-value=2.9e-09  Score=80.65  Aligned_cols=218  Identities=16%  Similarity=0.221  Sum_probs=176.3

Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142           14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      .+..++..++++|.+.-+.+|.+|+..+..++...++..+.+     +..|+.+++.++..........+++.++...| 
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence            344678889999999889999999999999999888877766     46788888778878887788899999997654 


Q ss_pred             CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                         ..+.+.+|.+..-..-.++.++.+..++|..+.+. ++....     +++..+..++.++|..-+..++..++.+..
T Consensus       103 ---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          103 ---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             ---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             ---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence               56688999999988999999999999999999987 443333     356788999999998889999999988876


Q ss_pred             CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      +......     .++|.+..+|.+. +.-+|..++-+|.+++..++..+..+.      .-+.=+.+.+..+++.....|
T Consensus       174 n~~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHH
T ss_pred             cCccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHH
Confidence            6554332     6799999999999 999999999999999999988554432      233445667777888777777


Q ss_pred             HHhcC
Q 037142          254 SNATF  258 (383)
Q Consensus       254 ~~l~~  258 (383)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.23  E-value=9.2e-11  Score=101.83  Aligned_cols=274  Identities=15%  Similarity=0.107  Sum_probs=166.3

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhh
Q 037142           21 IFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVR  100 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  100 (383)
                      ..++++.++|..++....-.+.+++...++.   +   =++..+.+-+ +++++-++..|+++++++....      ...
T Consensus        72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------m~~  138 (355)
T 3tjz_B           72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDM-TGKEDSYRGPAVRALCQITDST------MLQ  138 (355)
T ss_dssp             HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------THH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------HHH
Confidence            3467888999999999999999988763331   1   2356777888 6789999999999999998753      456


Q ss_pred             chhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccc
Q 037142          101 PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL  180 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  180 (383)
                      .+.+.+.+.+.+.++.+++.|+.+...+... .++..    + ++++.+.+++.+.++.++..|+.++..+...+..   
T Consensus       139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---  209 (355)
T 3tjz_B          139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---  209 (355)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence            7888899999999999999999999999977 44432    2 5889999999999999999999999999765421   


Q ss_pred             ceecCCChHHHHHhhccc--cchhHHHHHHHHHHHHhcCC-HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhc
Q 037142          181 YIINCGALPYLLGLLIDN--HKTSIKNYACWIISNITAGN-REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       181 ~l~~~~~i~~l~~ll~~~--~~~~~~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~  257 (383)
                            .+..++..+...  .++..+...++.++.++..+ +..     ...+++.+..++++.++.|..+|+.+|..+.
T Consensus       210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~  278 (355)
T 3tjz_B          210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP  278 (355)
T ss_dssp             ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred             ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence                  244445544332  13555556666665555443 222     2446677788888999999999999999986


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc
Q 037142          258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR  337 (383)
Q Consensus       258 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~  337 (383)
                      .. +....     ...+..|..++.++++.++..|+..|..+....+..                +..+  -..+++++.
T Consensus       279 ~~-~~~~~-----~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~----------------v~~~--n~~ie~li~  334 (355)
T 3tjz_B          279 GC-SAKEL-----APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA----------------VTAC--NLDLENLVT  334 (355)
T ss_dssp             ---------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             CC-CHHHH-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH----------------HHHH--HHHHHHHcc
Confidence            53 11211     236778888888999999999999999888754432                3332  346788999


Q ss_pred             CCCHHHHHHHHHHH
Q 037142          338 HDNYEIHEKSAKIL  351 (383)
Q Consensus       338 ~~~~~v~~~a~~~l  351 (383)
                      ++|..|...|...|
T Consensus       335 d~n~sI~t~Aittl  348 (355)
T 3tjz_B          335 DANRSIATLAITTL  348 (355)
T ss_dssp             --------------
T ss_pred             CCcHhHHHHHHHHh
Confidence            99999888877654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.16  E-value=6.2e-11  Score=113.94  Aligned_cols=200  Identities=17%  Similarity=0.155  Sum_probs=149.3

Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC
Q 037142           12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK   91 (383)
Q Consensus        12 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (383)
                      ...+..+.| +++.|++++++.|..|+++|++++. ++..+..+...|++..++.-+..+++.+++..|+++|.||+.+.
T Consensus        30 ~~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           30 KLREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             ccchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            344455555 5567999999999999999999996 67888999999998887654337889999999999999999764


Q ss_pred             C--CCChhhhhchhHHHHHhhccCC---------------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142           92 P--RPIFDQVRPCLPTLAQLVHSND---------------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR  148 (383)
Q Consensus        92 ~--~~~~~~~~~~i~~l~~ll~~~~---------------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~  148 (383)
                      .  ........++++.|..+++...                     .++..+++.+|+++|.. ..+....+...+.++.
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-s~~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-RDEIHEAVATKQTILR  186 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHTCHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHhcccHHH
Confidence            2  1233344788998888875210                     24556788999999987 6777777888888999


Q ss_pred             HHHhcCC---CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh--ccccchhHHHHHHHHHHHHh
Q 037142          149 LVKLLGH---PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL--IDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       149 l~~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll--~~~~~~~~~~~a~~~l~nl~  215 (383)
                      ++..|.+   ...+++..++.+|..++..++...+.+.+.+....+..++  ... +...+..+++++.|+.
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            9998854   3467999999999999998887777676665433322222  233 4456778888988874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.14  E-value=1.7e-08  Score=76.52  Aligned_cols=217  Identities=12%  Similarity=0.138  Sum_probs=172.1

Q ss_pred             hcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCch
Q 037142           57 GEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKND  135 (383)
Q Consensus        57 ~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~  135 (383)
                      +..++..++.+| ++.-..++.+|+..+.+++...|    ......+..|+-+++ ++...+-.....+++.++.- .++
T Consensus        30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE  103 (253)
T ss_dssp             CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH
T ss_pred             hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH
Confidence            445688899999 66678899999999999998653    345566666777765 56677778889999999976 555


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          136 EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       136 ~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      .+..     .+|.++.-.+-.+++++.....+|..++..++....     +++.-+.++++++ +..=+..++..++.+.
T Consensus       104 ~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          104 LVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMG  172 (253)
T ss_dssp             HHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCC
T ss_pred             HHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHh
Confidence            4443     578999999999999999999999999988885443     6778899999988 8777888888888887


Q ss_pred             cCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 037142          216 AGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKA  295 (383)
Q Consensus       216 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~  295 (383)
                      .+.....     ..++|.|..++++.+.-||..|+.+|.+++.. ++. .+.     ++..-+.-+++.+..++...-.+
T Consensus       173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRk-----ii~~kl~e~~D~S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRK-----VVIKRLEELNDTSSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHH-----HHHHHHHHCCCSCHHHHHHHHHH
T ss_pred             ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHH-----HHHHHHHHhcCcHHHHHHHHHHH
Confidence            6665544     45799999999999999999999999999987 344 333     24455666778888899888899


Q ss_pred             HHHHHHh
Q 037142          296 LENILKV  302 (383)
Q Consensus       296 l~~l~~~  302 (383)
                      |..++-.
T Consensus       241 L~rl~l~  247 (253)
T 2db0_A          241 ISRLLLL  247 (253)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9888753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.14  E-value=2.1e-09  Score=84.98  Aligned_cols=225  Identities=17%  Similarity=0.140  Sum_probs=170.7

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      .+.+..+.+++.+.|+.++.+++.+|..+....+.......++ .+++.++.+++++|..+...|+++|..+..+.+-..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            4478889999999999999999999999997623333334444 478999999999999999999999999998877444


Q ss_pred             cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      +.+.  .+...+..+++++ ++-++.++.-.++.+--.++       ..++...+..++.+.+.++|..|..++.+++..
T Consensus       111 ~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence            4333  2567888888987 99999999999998833221       123456778888889999999999999999876


Q ss_pred             C-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHh-c
Q 037142          260 G-THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQ-R  337 (383)
Q Consensus       260 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~  337 (383)
                      . +++..     .+++.-+-++++++|+.++..|+.++..++...-....       .+.+.      +......++. -
T Consensus       181 S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~-------~~~~~------~~~~~v~~l~~~  242 (265)
T 3b2a_A          181 SADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENV-------KIELL------KISRIVDGLVYR  242 (265)
T ss_dssp             CSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCC-------HHHHH------HHHHHHHHGGGC
T ss_pred             cCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhH-------HHHHH------HHHHHHHHHHHh
Confidence            4 22222     24777788899999999999999999999987443221       22222      2345566777 6


Q ss_pred             CCCHHHHHHHHHHHHH
Q 037142          338 HDNYEIHEKSAKILET  353 (383)
Q Consensus       338 ~~~~~v~~~a~~~l~~  353 (383)
                      .+.+.++.+|-.+.+.
T Consensus       243 ~~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          243 EGAPIIRLKAKKVSDL  258 (265)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHH
Confidence            7888898888766554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.13  E-value=9e-11  Score=112.82  Aligned_cols=197  Identities=14%  Similarity=0.054  Sum_probs=150.5

Q ss_pred             ChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHH-HHHhhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 037142           60 ALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPT-LAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ  138 (383)
Q Consensus        60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~-l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (383)
                      .+.++++.| +++++..|..|+++|++|+.+...+......++++. +..++.+++.+++..++++|.||+.....+.+.
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            355677889 688999999999999999986544445555677765 566788999999999999999999652356777


Q ss_pred             HHHHhCcHHHHHHhcCCCC---------------------hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc
Q 037142          139 AVIEAGVCPRLVKLLGHPS---------------------QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID  197 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~  197 (383)
                      .+...|+++.|..+++...                     ..+...++.+|++|+..+++....+...+.++.++..+.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            8888999999998875310                     1244567889999998887777777788899999988854


Q ss_pred             c--cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh--hcCchhHHHHHHHHHHHhc
Q 037142          198 N--HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL--QNAVFYIKKEAAWAISNAT  257 (383)
Q Consensus       198 ~--~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~l~~l~  257 (383)
                      .  ....++..++.+|.+++..+++..+.+.+.+....+..++  ...+...+..+++.+.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            3  1357999999999999999999998888766543322222  3345556778899998873

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.13  E-value=8.6e-09  Score=97.86  Aligned_cols=260  Identities=12%  Similarity=0.072  Sum_probs=178.7

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +..+.+=|.++++.++-.|+++|+++..  ++..+.+     ++.+.+++. .+.++.+++.|+.++.++....|..  .
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~--~  183 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL--V  183 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--C
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--c
Confidence            5667777888999999999999999963  4544433     577888873 3678999999999999999865421  1


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-------------CChhhHHHH
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-------------PSQSVLTQA  164 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-------------~~~~v~~~a  164 (383)
                      ...+.++.+.+++.+.++.++..++.++..++.. .+........ .+++.+..++..             +++..+...
T Consensus       184 ~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~-~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i  261 (621)
T 2vgl_A          184 PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK-NPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL  261 (621)
T ss_dssp             CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred             CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-ChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence            1147899999999999999999999999999976 3332221111 123333333322             167899999


Q ss_pred             HHHHhhhhcCCC-ccccceecCCChHHHHHhh---------ccccch--hHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142          165 LHTVGNIARGDY-SQTLYIINCGALPYLLGLL---------IDNHKT--SIKNYACWIISNITAGNREQIQAVIDAGLIG  232 (383)
Q Consensus       165 ~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll---------~~~~~~--~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  232 (383)
                      ++.+..++..++ .....+.  ++++.++..+         ++. +.  .+..+++.++..+. .+++....     ++.
T Consensus       262 l~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~~-----~~~  332 (621)
T 2vgl_A          262 LRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLVR-----ACN  332 (621)
T ss_dssp             HHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHH-----HHH
T ss_pred             HHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcC-CcHHHHHH-----HHH
Confidence            999998875332 2221111  1233333222         122 22  77888888888875 33343332     456


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 037142          233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       233 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~  302 (383)
                      .|..++.++++.+|..|..+|..++.....  ... + ......++.++. ++|..++..++..+..++..
T Consensus       333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~-~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          333 QLGQFLQHRETNLRYLALESMCTLASSEFS--HEA-V-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHH-H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHH-H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            788888888999999999999999876421  112 2 236778888888 88999999999999888753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.04  E-value=1.9e-09  Score=90.08  Aligned_cols=186  Identities=14%  Similarity=0.155  Sum_probs=144.4

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 037142           62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAV  140 (383)
Q Consensus        62 ~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (383)
                      +.+.+.+ ++.+...|..++..|..++...+.........+++.+...+. +.+..++..++.++..++.. -.+.....
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG-LAKRFSNY   95 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGGGGHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-HhhhHHHH
Confidence            3477788 688999999999999999876322212224678899999995 99999999999999999965 33333444


Q ss_pred             HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC-H
Q 037142          141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN-R  219 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~-~  219 (383)
                      ... ++|.++..+.+++..++..+..+|..++...+  .     ..+++.+...+.+. ++.+|..++..++.+.... +
T Consensus        96 ~~~-ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 ASA-CVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence            443 89999999999999999999999999986432  1     14678888899988 9999999999999965432 2


Q ss_pred             H-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          220 E-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       220 ~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      + .....+ ..++|.+..++.+.++++|..|..+++.++..
T Consensus       167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 111222 35789999999999999999999999998754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=99.04  E-value=6.6e-08  Score=85.88  Aligned_cols=323  Identities=12%  Similarity=0.071  Sum_probs=200.8

Q ss_pred             HhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCh---HHHHHHHhcCCh-HHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142           14 VDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESP---RFRDLVLGEAAL-IPLLTQLNNHENLSMKRIATWTLSNLC   88 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~~L~~~~~~~~~~~a~~~L~~l~   88 (383)
                      .+..++..|+++|.. .++++..+++..+..+..+++   .....+.+..-. ..+........+.-....+..++..++
T Consensus        74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~  153 (480)
T 1ho8_A           74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV  153 (480)
T ss_dssp             CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            344577889999985 889999999999999888776   444444444322 223333323334444456666656665


Q ss_pred             CCCCCCChhhhhchhH--HHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcC----C----
Q 037142           89 GGKPRPIFDQVRPCLP--TLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLG----H----  155 (383)
Q Consensus        89 ~~~~~~~~~~~~~~i~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~----~----  155 (383)
                      ...+. ........+.  -++..+.. ++...+.-++.++..+.+.  ++....+.+.  +.++.++..++    +    
T Consensus       154 ~~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~  230 (480)
T 1ho8_A          154 QNGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  230 (480)
T ss_dssp             STTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             ccCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence            43322 3333344444  34445554 3445566788899988876  4444444432  24566654332    1    


Q ss_pred             ---------CChhhHHHHHHHHhhhhcCCCccccceecCCCh--HHHHHhhccccchhHHHHHHHHHHHHhcCCH----H
Q 037142          156 ---------PSQSVLTQALHTVGNIARGDYSQTLYIINCGAL--PYLLGLLIDNHKTSIKNYACWIISNITAGNR----E  220 (383)
Q Consensus       156 ---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i--~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~----~  220 (383)
                               ...+++..++-+++.++...+ ....+...++.  ..++.+++....+++.+-++.++.|+....+    .
T Consensus       231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                     135678999999999987655 44445555533  5666777766589999999999999987651    2


Q ss_pred             HHH-HHHhcCChHHHHHHhhc---CchhHHHHHHHHHHHh-------c--------------CCCCHHHHH-HHHH----
Q 037142          221 QIQ-AVIDAGLIGPLVNLLQN---AVFYIKKEAAWAISNA-------T--------------FGGTHEQIK-YLER----  270 (383)
Q Consensus       221 ~~~-~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l-------~--------------~~~~~~~~~-~l~~----  270 (383)
                      ... .++..++++ +++.|..   .++++....-.....+       +              .. +|.+.. .+..    
T Consensus       310 ~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~  387 (480)
T 1ho8_A          310 VIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNID  387 (480)
T ss_dssp             HHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSG
T ss_pred             HHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHH
Confidence            223 333455544 4455543   3555554433222111       1              11 111111 1111    


Q ss_pred             ------cCChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          271 ------EGCIKPLCDLLLC----------PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       271 ------~~~i~~L~~ll~~----------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                            ..++..|++++++          .|+.+...||.=+..+++..+.             -+..+.+.|+.+.+.+
T Consensus       388 kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~  454 (480)
T 1ho8_A          388 EFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIME  454 (480)
T ss_dssp             GGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHH
T ss_pred             HHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHH
Confidence                  1257788888873          3678888899999999987553             4567889999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhc
Q 037142          335 LQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      |+.|+|++|+..|+.++..+.
T Consensus       455 Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          455 LLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HTSCSSHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999887754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.03  E-value=7.3e-08  Score=76.35  Aligned_cols=201  Identities=18%  Similarity=0.144  Sum_probs=156.4

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChH-HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPR-FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      .+.+..|.++|.+.|+.++..|+.+|..+....+. .+...+ ..+++.++.++ .+.|..+.-.|+.++..+..+.|- 
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL-  108 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPM-  108 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCB-
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCC-
Confidence            35788999999999999999999999999876433 333333 45589999999 788999999999999999998643 


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .......+...+..++.++++-++..++..+..+---   .....     ++..+..++.+.|.+++..++.++.+++..
T Consensus       109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~---~~~~~-----V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL---EDSKL-----VRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS---CCCHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc---cchHH-----HHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence            3345567888899999999999999999999998322   22222     467888888999999999999999999965


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      +.+. . ++ .++++-+-.++++. ++.++..|+.++-.+...+       +..++++.+..++
T Consensus       181 S~D~-~-i~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p-------i~~~~~~~~~~~~  233 (265)
T 3b2a_A          181 SADS-G-HL-TLILDEIPSLLQND-NEFIVELALDVLEKALSFP-------LLENVKIELLKIS  233 (265)
T ss_dssp             CSSC-C-CG-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC-------CCSCCHHHHHHHH
T ss_pred             cCCH-H-HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc-------ccHhHHHHHHHHH
Confidence            4321 1 12 25677788999999 9999999999999987653       2244555555544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.94  E-value=1.5e-08  Score=84.50  Aligned_cols=192  Identities=9%  Similarity=0.056  Sum_probs=143.8

Q ss_pred             HHHHhcCCCChhHHHHHHHHHHh-hcCCCCCCC--hhhhhchhHHHHHhh-ccCCHHHHHHHHHHHHHhccCCCc-hHHH
Q 037142           64 LLTQLNNHENLSMKRIATWTLSN-LCGGKPRPI--FDQVRPCLPTLAQLV-HSNDEHVMSNACWGLSLLCDGGKN-DEIQ  138 (383)
Q Consensus        64 L~~~L~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~-~~~~  138 (383)
                      +.+.+ .+.++.-|..++..|.. ++...+...  ......++..+.+.+ ++.+..++..++.++..++.+ -. +...
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~-l~~~~f~   98 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK-LKTPGFS   98 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HCTTTSC
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh-ccccccc
Confidence            45666 67899999999999999 876533322  223356788899999 688999999999999999975 22 2333


Q ss_pred             -HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcC
Q 037142          139 -AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAG  217 (383)
Q Consensus       139 -~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~  217 (383)
                       ..... ++|.++..+++..+.|+..+..++-.++...+.....-.-..+++.+...+++. ++.+|..++.+|..++..
T Consensus        99 ~~y~~~-llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A           99 KDYVSL-VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence             33332 789999999999999999999999888865432111000114678888999998 999999999999998864


Q ss_pred             CH---HHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCC
Q 037142          218 NR---EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       218 ~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~  259 (383)
                      .+   ......+...++|.+..++.+.+..+|..|..+++.++..
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            43   3233333357899999999999999999999999887643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.93  E-value=1.7e-09  Score=90.41  Aligned_cols=187  Identities=12%  Similarity=0.168  Sum_probs=140.5

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      -+.+.+.+++.++..|..|+..|..+....+.....- -..+++.|...+.++++..++..++.+++.++..-...-...
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3457888899999999999999999886422211000 012356677777337899999999999999996532222234


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC-Cc
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD-YS  177 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~-~~  177 (383)
                      ...++|.++..+.+++..++..+..++..++.. .+  ..     .+++.+...+++.++.++..++..|..+.... +.
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-TS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-SC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-CC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            477999999999999999999999999999976 32  22     26788999999999999999999999965443 22


Q ss_pred             -cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          178 -QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       178 -~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                       .....+. .+++.+..++.+. ++.+|..|..+++.++.
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence             1111222 5788899999888 99999999999999874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.83  E-value=1.2e-06  Score=84.71  Aligned_cols=274  Identities=12%  Similarity=0.088  Sum_probs=190.7

Q ss_pred             ChHHHHHhhC---CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC-------ChhHHHHHHHHHHhh
Q 037142           18 AVPIFVKLLA---SPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE-------NLSMKRIATWTLSNL   87 (383)
Q Consensus        18 ~i~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-------~~~~~~~a~~~L~~l   87 (383)
                      ++..|-+.|.   ++++.++.-|+.+|+.+......  +      ++..|...|.++.       ++.++..|+..|+..
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4667777776   56788999999999999876532  1      3566777774322       256788888888887


Q ss_pred             cCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHH
Q 037142           88 CGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALH  166 (383)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~  166 (383)
                      .....      -..+++.|.+++.+++..++..++.+++.+-.+..+.  .      .+..|++.+ .+.+..++..+..
T Consensus       465 ~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~------ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          465 AMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--E------AIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             STTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--H------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--H------HHHHHHHHHhccCcHHHHHHHHH
Confidence            66542      1247788888888887777778888888764431111  1      223344433 3467789999999


Q ss_pred             HHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHhcCChHHHHHHh-hcCch
Q 037142          167 TVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVIDAGLIGPLVNLL-QNAVF  243 (383)
Q Consensus       167 ~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~~~~l~~L~~ll-~~~~~  243 (383)
                      +|+.+..+.++         .++.++..|....++.+|..++.+++.-..  ++...         ++.|+..+ .+.+.
T Consensus       531 gLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          531 GLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            99988766553         466777777655488999999988876554  44333         33333333 45678


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh-cCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL-LLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      .+|+.|+.+|+.+.....          ..++.+++. .++.++.+|..+..++..+....+.                 
T Consensus       593 ~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-----------------  645 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-----------------  645 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-----------------
T ss_pred             HHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-----------------
Confidence            899999999999876632          245666664 4578999999999999977642221                 


Q ss_pred             HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 037142          323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                         ...++.|..+.++++..|++.|...|-.......+.
T Consensus       646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence               113467888899999999999999998777766655

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.82  E-value=4.4e-08  Score=85.06  Aligned_cols=238  Identities=13%  Similarity=0.082  Sum_probs=138.3

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      ++..|.+=++++++-+|-.|+++|+++...  +..+.+     .+.+.+.| .+.++.+++.|+.+...+....|    .
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l-----~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e  172 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAI-----ERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----D  172 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHH-----HHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----H
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHH-----HHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----H
Confidence            366777778889999999999999999854  333332     46677888 78899999999999999987654    3


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC---CChhhHHHHHHHHhhhhcC
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH---PSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~---~~~~v~~~a~~~L~~l~~~  174 (383)
                      ...+.++.+..++.+.++.++.+++.++..+... +..         .+..++..+..   .++-.+...++.++.++..
T Consensus       173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~  242 (355)
T 3tjz_B          173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLED  242 (355)
T ss_dssp             HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence            4567899999999999999999999999999976 322         12333333333   2566666667777677655


Q ss_pred             C-CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          175 D-YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       175 ~-~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      + +.     ....+++.+.+++++. ++.|..+|++++..+...+...     -..++..+..++.++++.+|.-|...|
T Consensus       243 d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L  311 (355)
T 3tjz_B          243 EDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTL  311 (355)
T ss_dssp             -------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC
T ss_pred             cchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence            4 22     2235677888889988 9999999999998885422221     133466777788889999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 037142          254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLK  294 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~  294 (383)
                      ..+... .+...+.     .-..+.+++.+++..+.-.|+.
T Consensus       312 ~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait  346 (355)
T 3tjz_B          312 NKVAMK-HPSAVTA-----CNLDLENLVTDANRSIATLAIT  346 (355)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence            888865 2333332     4456777888887666554444

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.80  E-value=1.5e-09  Score=81.33  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=95.0

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      ....++.+..+|+++++.+|..|+++|+.+...            .++.|+..| +++++.++..++++|+++..     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence            456788999999999999999999999876431            268899999 68899999999999999863     


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                           ...++.|..+++++++.++..++++|..+...            ..++.|...++++++.++..+..+|+.+
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~------------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE------------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH------------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 34789999999999999999999999998732            2578899999999999999999988753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=8.6e-09  Score=86.07  Aligned_cols=193  Identities=9%  Similarity=0.119  Sum_probs=142.1

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHH-HhcCChHHHHHHHh-cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CCCh-
Q 037142           21 IFVKLLASPSDDIRMQSVWALGN-IAAESPRFRDLVLG-EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPIF-   96 (383)
Q Consensus        21 ~L~~lL~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-   96 (383)
                      -|.+.+.+.++.-|..|+..|.. ++.+.++......+ ..++..|.+.+.++.+..++..|+.+++.++.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            46677889999999999999999 87443221100000 12356677777557789999999999999996543 2333 


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHH-HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAV-IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      .....++|.++..+.+....++..+..++..++.. .++....- .+ .+++.++..|++.++.++..++.+|..++...
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            45577999999999999999999999999988875 22211110 11 26788999999999999999999999998665


Q ss_pred             Ccc---ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          176 YSQ---TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       176 ~~~---~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      +..   ....+...+++.+..++.++ ++.+|..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            431   11122247899999999988 99999999999998863

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.69  E-value=7.3e-07  Score=86.26  Aligned_cols=204  Identities=16%  Similarity=0.210  Sum_probs=143.3

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      ++.|.+.+.+.+..++..|+.+|+.+-.++..       ..++..|++.+.++.+..+++.++..|+.+....+      
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------  540 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------  540 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------
Confidence            66777778776667777888888877432211       12345666665456678899999999988875532      


Q ss_pred             hhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc-CCCChhhHHHHHHHHhhhhcCCC
Q 037142           99 VRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL-GHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        99 ~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L-~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                        ..++.+++.+. +.++.+|..++.++.--+.+  ..+..      .++.|++.+ .+.++.++..|..+|+.+..+++
T Consensus       541 --e~~~~li~~L~~~~dp~vRygaa~alglAyaG--TGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          541 --ELADDLITKMLASDESLLRYGGAFTIALAYAG--TGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             --GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--SCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC--CCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence              35666766665 56788888888877655544  11111      245444444 45678899999999999876654


Q ss_pred             ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       177 ~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                               ..++.++..+.+..++.+|..+..+++.++.+++.       ..+++.|..++++++..||..|+.+|+.+
T Consensus       611 ---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          611 ---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             ---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                     23566666665444999999999999999987643       22456778888899999999999999999


Q ss_pred             cCCCC
Q 037142          257 TFGGT  261 (383)
Q Consensus       257 ~~~~~  261 (383)
                      ....+
T Consensus       675 g~gtn  679 (963)
T 4ady_A          675 LIQQT  679 (963)
T ss_dssp             STTCC
T ss_pred             hcCCc
Confidence            87643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=5.1e-09  Score=78.33  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=91.8

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT  179 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  179 (383)
                      ...++.+..+++++++.++..++++|..+...             .++.|+..|+++++.++..++++|+.+..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST-------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            45678888999999999999999888766532             25888999999999999999999998752      


Q ss_pred             cceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 037142          180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA  256 (383)
Q Consensus       180 ~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l  256 (383)
                           ...++.|...+.++ ++.+|..++++|+++..           ...++.|..++.++++.+|..|+++|..+
T Consensus        72 -----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 13588899999888 99999999999999852           23467888889888999999999988653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.43  E-value=3.1e-06  Score=71.62  Aligned_cols=189  Identities=12%  Similarity=0.103  Sum_probs=143.3

Q ss_pred             HHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 037142          147 PRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI  226 (383)
Q Consensus       147 ~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~  226 (383)
                      ..+++.|.+++.+.+..++..|..+...+......+++.+++..|+.+.... +.+++..++.+++++.... ....-++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchh
Confidence            4556666677888899999999986556777888899999999999999998 9999999999999998754 4454555


Q ss_pred             -hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH----------cCChHHHHhhcC---CCCHHHHHHH
Q 037142          227 -DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER----------EGCIKPLCDLLL---CPDPQIVTVC  292 (383)
Q Consensus       227 -~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~----------~~~i~~L~~ll~---~~~~~v~~~a  292 (383)
                       ...++..+..++.+....|.+.|...|..++... +.....+.+          ...++.|+.+|+   ..|.+++.++
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s-e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS-ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC-cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence             5668888999988888999999999999998763 222222211          124788999997   6789999999


Q ss_pred             HHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCC--CHHHHH
Q 037142          293 LKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHD--NYEIHE  345 (383)
Q Consensus       293 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~  345 (383)
                      +..|..++...+....       ...+...+++.|.-..+.+.+...  +.++.+
T Consensus       278 mtLIN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          278 VTLINKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            9998888877553211       235777788888877888876665  545443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.25  E-value=1.3e-05  Score=67.85  Aligned_cols=187  Identities=12%  Similarity=0.077  Sum_probs=134.4

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccce
Q 037142          103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYI  182 (383)
Q Consensus       103 i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  182 (383)
                      ...++.-+.+.+...++.++.-|..+... +.+....++..+++..|+....+.+.+.+..+++++.++..+.+.....+
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            34455666677788889999999985544 57899999999999999999999999999999999999987644222212


Q ss_pred             ecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh----------cCChHHHHHHhh---cCchhHHHHH
Q 037142          183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID----------AGLIGPLVNLLQ---NAVFYIKKEA  249 (383)
Q Consensus       183 ~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~----------~~~l~~L~~ll~---~~~~~v~~~a  249 (383)
                      -...++..+..++.+. +..+.+.|+..|-.++..++.....+.+          ...++.++.+++   ..+.+++..|
T Consensus       199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            2456889999999976 8999999999999998766433332221          124889999997   6788999998


Q ss_pred             HHHHHHhcCCCC-HHHHH----HHHHcCChHHHHhhcCCC--CHHHHHH
Q 037142          250 AWAISNATFGGT-HEQIK----YLEREGCIKPLCDLLLCP--DPQIVTV  291 (383)
Q Consensus       250 ~~~l~~l~~~~~-~~~~~----~l~~~~~i~~L~~ll~~~--~~~v~~~  291 (383)
                      ...|-.+....+ .+...    .+-+.|+-..+...++..  +++++.+
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            877766655533 33222    333345555666666654  5565543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.18  E-value=8.8e-06  Score=72.43  Aligned_cols=209  Identities=16%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             ChHHHHHHHhCC--ChHHHHHhhC---------------C--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh--HHH
Q 037142            6 TLEDKKAVVDHG--AVPIFVKLLA---------------S--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL--IPL   64 (383)
Q Consensus         6 ~~~~~~~~~~~g--~i~~L~~lL~---------------~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~L   64 (383)
                      .+++|..+.+.+  .++.+++.+.               +  ...+++.+++.++.-++... +..+.+...++.  +.|
T Consensus       198 ~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L  276 (480)
T 1ho8_A          198 IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDL  276 (480)
T ss_dssp             SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHH
T ss_pred             chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHH
Confidence            567788888754  3566654332               1  13678999999999999764 566666666643  567


Q ss_pred             HHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh------hhhhchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCC--Cc
Q 037142           65 LTQLNNHENLSMKRIATWTLSNLCGGKPRPIF------DQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGG--KN  134 (383)
Q Consensus        65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~--~~  134 (383)
                      +..++.+..+.+.+.++.+|.|+....+....      ....++++.+..+-.  -.|+++....-.....|-...  -.
T Consensus       277 ~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lt  356 (480)
T 1ho8_A          277 LKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELT  356 (480)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcc
Confidence            77787778899999999999999987532211      111344443333333  345666555433322221110  00


Q ss_pred             --hHHHHHHHh---------------------------CcHHHHHHhcCC----------CChhhHHHHHHHHhhhhcCC
Q 037142          135 --DEIQAVIEA---------------------------GVCPRLVKLLGH----------PSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus       135 --~~~~~~~~~---------------------------~~i~~l~~~L~~----------~~~~v~~~a~~~L~~l~~~~  175 (383)
                        +.+..-+.+                           .++..|+++|.+          .|+.+..-||.=++.++.+.
T Consensus       357 sfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~  436 (480)
T 1ho8_A          357 SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL  436 (480)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC
Confidence              111111111                           256788888873          37888999999999999999


Q ss_pred             CccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       176 ~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      |.....+-+.|+=..++.++.++ +++|+.+|+.++..+..
T Consensus       437 P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          437 PESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            98888777778888999999999 99999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.13  E-value=0.0003  Score=69.09  Aligned_cols=265  Identities=15%  Similarity=0.155  Sum_probs=182.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAES---PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      +++..+.+.+.+..+.  +.|+.++..++...   +..-..++  +.++.++..+ .+....++..|-.++..+...-+ 
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~-  127 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN-  127 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC-
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC-
Confidence            3566666666653223  88999999998432   12222333  5788888888 57778888888777777765432 


Q ss_pred             CChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           94 PIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                        ......++|.|...+.+. .+..+..++.++..++.. .++....... .++|.+...+-+..++|...+..++..+|
T Consensus       128 --~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~-~~~~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          128 --PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA-AKDQVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             --GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-SHHHHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred             --HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hHHHHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence              122377899999988755 699999999999999976 4443333333 48999999999999999999999998888


Q ss_pred             cCCCc-cccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCC--HHHHHHHHhcCChHHHHHHhhcCchhHHHHH
Q 037142          173 RGDYS-QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGN--REQIQAVIDAGLIGPLVNLLQNAVFYIKKEA  249 (383)
Q Consensus       173 ~~~~~-~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  249 (383)
                      ..-++ .+     ...+|.|++.+.++ +.  ..+++..|+..+.-.  ..-.-.+    +.|.|..-|......+++.+
T Consensus       204 ~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~  271 (986)
T 2iw3_A          204 ETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKS  271 (986)
T ss_dssp             GGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHH
T ss_pred             hcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheee
Confidence            53221 11     15688999998876 33  455566665543211  1111111    35566666666788899999


Q ss_pred             HHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhch
Q 037142          250 AWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       250 ~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +.++.|+|.-- ++.....++. .++|.+-...+ -.+|++|..+..++..+...+.
T Consensus       272 ~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          272 AVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            99999998754 5666666544 47777777666 4699999999888888876644

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=98.07  E-value=0.0005  Score=58.17  Aligned_cols=228  Identities=11%  Similarity=0.045  Sum_probs=163.2

Q ss_pred             HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhh---h---hchhHHHHHhhccCCHHHHHHHHHH
Q 037142           51 FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ---V---RPCLPTLAQLVHSNDEHVMSNACWG  124 (383)
Q Consensus        51 ~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~---~~~i~~l~~ll~~~~~~~~~~~~~~  124 (383)
                      ....+...+.+..|+..| ..-+-+.+..+..++.++.+.........   .   ..++..|+...+  ++++...+-..
T Consensus        70 L~~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~m  146 (341)
T 1upk_A           70 LAQELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIM  146 (341)
T ss_dssp             HHHHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHH
Confidence            334566778888899988 66788999999999999998763322111   1   344555555544  34555566666


Q ss_pred             HHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC---CChHHHHHhhccccch
Q 037142          125 LSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC---GALPYLLGLLIDNHKT  201 (383)
Q Consensus       125 l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~~~  201 (383)
                      |...+++  ....+.+...+.+..+++++..++-++...|..++..+..........++..   .++.....++.++ +.
T Consensus       147 LRecir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NY  223 (341)
T 1upk_A          147 LRECIRH--EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NY  223 (341)
T ss_dssp             HHHHHTS--HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SH
T ss_pred             HHHHHHh--HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cc
Confidence            7777766  5666667777788899999999999999999999998876554444444443   3566777888888 99


Q ss_pred             hHHHHHHHHHHHHhcC--CHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHH--cCCh
Q 037142          202 SIKNYACWIISNITAG--NREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG--THEQIKYLER--EGCI  274 (383)
Q Consensus       202 ~~~~~a~~~l~nl~~~--~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~--~~~i  274 (383)
                      -+++.++..|+.+...  +.......+ +..-+..++.+|.+.+..++.+|..++--++.+.  +++....+..  ..++
T Consensus       224 VTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl  303 (341)
T 1upk_A          224 VTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLI  303 (341)
T ss_dssp             HHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHH
T ss_pred             hhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHH
Confidence            9999999999998754  334444444 5667899999999999999999999988887765  3444444443  2456


Q ss_pred             HHHHhhcCCC
Q 037142          275 KPLCDLLLCP  284 (383)
Q Consensus       275 ~~L~~ll~~~  284 (383)
                      ..|-++..+.
T Consensus       304 ~fl~~f~~d~  313 (341)
T 1upk_A          304 EFLSKFQNDR  313 (341)
T ss_dssp             HHHHHTTTTC
T ss_pred             HHHHhCCCCC
Confidence            6666665544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.07  E-value=0.00014  Score=71.45  Aligned_cols=220  Identities=16%  Similarity=0.198  Sum_probs=155.9

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhc-CChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      +.++.++..+.+....++..|-.+...+.. -+++...     .++|.|+..|........+..|+.++..++...+..-
T Consensus        95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            578888888888888999998888777664 3343333     3378999999655678999999999999998654333


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCC
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD  175 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~  175 (383)
                      ......++|.+...+.+..+++...+..++..+|.-..+..+.     .++|.|+..+.+++.  ...+...|+..+.-.
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~  242 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLGATTFVA  242 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhhcCeeEe
Confidence            3445789999999999999999999999999888642333333     368999999988753  444455554433211


Q ss_pred             CccccceecCCC----hHHHHHhhccccchhHHHHHHHHHHHHhc--CCHHHHHHHHhcCChHHHHHHhhc-CchhHHHH
Q 037142          176 YSQTLYIINCGA----LPYLLGLLIDNHKTSIKNYACWIISNITA--GNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKE  248 (383)
Q Consensus       176 ~~~~~~l~~~~~----i~~l~~ll~~~~~~~~~~~a~~~l~nl~~--~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~  248 (383)
                      +      ++...    +|.|..-|... ...+++.++.++.|++.  .++.....++ ..++|-+...... .+|++|.-
T Consensus       243 ~------v~~~~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~  314 (986)
T 2iw3_A          243 E------VTPATLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREV  314 (986)
T ss_dssp             C------CCHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHH
T ss_pred             e------ecchhHHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHH
Confidence            1      22223    34444555555 77888999999999997  4555554443 4567777776654 58999988


Q ss_pred             HHHHHHHh
Q 037142          249 AAWAISNA  256 (383)
Q Consensus       249 a~~~l~~l  256 (383)
                      |..++..+
T Consensus       315 ~~~a~~~l  322 (986)
T 2iw3_A          315 TLRALKTL  322 (986)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777776

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.07  E-value=7.5e-05  Score=75.01  Aligned_cols=223  Identities=9%  Similarity=0.084  Sum_probs=132.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCChHHHHHHHhc-----CChH----HHHHHhcCCC---ChhHHHHHHHHHHhhcCCCCCCC
Q 037142           28 SPSDDIRMQSVWALGNIAAESPRFRDLVLGE-----AALI----PLLTQLNNHE---NLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        28 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~----~L~~~L~~~~---~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ++++..++.|+.+++.++........ ....     .+.+    .++..| .++   ++.+|..++|+++.++..-   .
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---T  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---C
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---C
Confidence            56788999999999999853110000 0000     1112    233344 334   7899999999999999763   2


Q ss_pred             hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC----------chHHHHHHHhCcHHHHHHhcCCCC-----hhh
Q 037142           96 FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK----------NDEIQAVIEAGVCPRLVKLLGHPS-----QSV  160 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----------~~~~~~~~~~~~i~~l~~~L~~~~-----~~v  160 (383)
                      ......+++.+++.+.++++.++..|++++.+++....          .+....... .+++.++.++....     ...
T Consensus       491 ~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~  569 (960)
T 1wa5_C          491 KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAE  569 (960)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccc
Confidence            34567889999999998889999999999999987411          111222222 25667777776641     112


Q ss_pred             HHHHHHHHhhhhcCCCccccceecCCChHHHHHhh----ccccchhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHH
Q 037142          161 LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL----IDNHKTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll----~~~~~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~  235 (383)
                      ...++.++..++....+....... .+++.+...+    +++.++.++..++.+++.++.. .++.... +...++|.+.
T Consensus       570 ~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~  647 (960)
T 1wa5_C          570 NEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFL  647 (960)
T ss_dssp             CHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHH
Confidence            345566666655332222221111 2334444443    2333566777788888888765 3232222 3445678888


Q ss_pred             HHhhcCchhHHHHHHHHHHHhcC
Q 037142          236 NLLQNAVFYIKKEAAWAISNATF  258 (383)
Q Consensus       236 ~ll~~~~~~v~~~a~~~l~~l~~  258 (383)
                      .++.....+....+...+..+..
T Consensus       648 ~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          648 TVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHhhhHhhHHHHHHHHHHHHH
Confidence            88876666677777777766653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.93  E-value=0.00076  Score=67.73  Aligned_cols=261  Identities=13%  Similarity=0.098  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-----CCChhHHHHHHHHHHhhcCCCCCCC--hh---hhhc
Q 037142           32 DIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-----HENLSMKRIATWTLSNLCGGKPRPI--FD---QVRP  101 (383)
Q Consensus        32 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----~~~~~~~~~a~~~L~~l~~~~~~~~--~~---~~~~  101 (383)
                      ..|..|..+|..++...+   +.+. .-+++.+.+.+.+     +++...++.|+.+++.++.......  ..   ....
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            467777788888775432   2221 1123333344421     4567889999999999975421111  00   0012


Q ss_pred             hhH----HHHHhhccC---CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142          102 CLP----TLAQLVHSN---DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       102 ~i~----~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      +.+    .+...+.++   ++-+|..++|+++.++.. -++   .... .+++.++..|.+++..|+..|+.+|.+++..
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-~~~---~~l~-~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTK---AQLI-ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCH---HHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-CCH---HHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            323    344445655   789999999999999976 221   2222 3688899999988899999999999999864


Q ss_pred             CC-------cc-ccceec--CCChHHHHHhhccc----cchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-
Q 037142          175 DY-------SQ-TLYIIN--CGALPYLLGLLIDN----HKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-  239 (383)
Q Consensus       175 ~~-------~~-~~~l~~--~~~i~~l~~ll~~~----~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-  239 (383)
                      .+       .. ...+..  ..+++.|..++...    .+......++.+++.++...++...... ..+++.+...+. 
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~  605 (960)
T 1wa5_C          527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTI  605 (960)
T ss_dssp             BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHH
Confidence            22       11 111111  12344455555542    0111334566666655431111111111 113344444443 


Q ss_pred             ---c-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          240 ---N-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       240 ---~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                         + .+...+..++.+|+.++...+++....+ ...+++.+...+.....+....+...+..++...
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence               2 3556777778888888765433333332 3346788888887665567777777777777654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.91  E-value=3.6e-05  Score=77.46  Aligned_cols=259  Identities=10%  Similarity=0.047  Sum_probs=144.0

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHH---hcC-CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ---LNN-HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP  104 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~---L~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  104 (383)
                      .++..++.|+.+++.++........     ..++.++.+   +.. ++++.++..++|+++.++..-.. .......+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            5778999999999999865433221     223333333   221 34788999999999999864321 1245577888


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC--CChhhHHHHHHHHhhhhcCCC-ccccc
Q 037142          105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH--PSQSVLTQALHTVGNIARGDY-SQTLY  181 (383)
Q Consensus       105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~  181 (383)
                      .++..+ +  +.++..|++++.++++. .........+ .++..+..++..  -+...+..++.+++.++...+ +....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~-~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRD-CQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHH-CHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHH-HHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            888888 3  78999999999999976 4444444444 367777777776  356788889999998875432 11111


Q ss_pred             eecCCChHHHHHhh----cccc-chhHHHHHHHHHHHHh---c--CCH--HH------HH--HHHhcCChHHHHHHhhc-
Q 037142          182 IINCGALPYLLGLL----IDNH-KTSIKNYACWIISNIT---A--GNR--EQ------IQ--AVIDAGLIGPLVNLLQN-  240 (383)
Q Consensus       182 l~~~~~i~~l~~ll----~~~~-~~~~~~~a~~~l~nl~---~--~~~--~~------~~--~~~~~~~l~~L~~ll~~-  240 (383)
                      .++ .+++.++..+    .... ++..+......+..++   .  ...  ..      .+  .-+-..+++.+..++.. 
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW  703 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence            111 2233333322    2221 1222333333333332   2  110  00      00  11124577777777754 


Q ss_pred             -CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          241 -AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       241 -~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                       .+..+.+.++++++.++..-..+...++-  .+++.++..+.....   ..+++.+..++....
T Consensus       704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~  763 (971)
T 2x1g_F          704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQTRCC---APTLEISKTAIVMFF  763 (971)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC--CC---HHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhC
Confidence             36789999999999976431111111111  134455555544321   236777777776443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.90  E-value=0.0014  Score=65.78  Aligned_cols=279  Identities=10%  Similarity=0.076  Sum_probs=156.1

Q ss_pred             HHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcCC---h--HHHHHHHhc--CChHHH-----------HHHhc--
Q 037142           11 KAVVDHGAVPIFV-KLLASPSDDIRMQSVWALGNIAAES---P--RFRDLVLGE--AALIPL-----------LTQLN--   69 (383)
Q Consensus        11 ~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~~--g~i~~L-----------~~~L~--   69 (383)
                      ..+++.++++.+. ++|.  +++++..|+.+|..+....   +  .+.+.+...  +.+..+           -..+.  
T Consensus       229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~  306 (1023)
T 4hat_C          229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA  306 (1023)
T ss_dssp             HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred             HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence            4566778888888 8874  6789999999999998621   2  222211100  111111           11111  


Q ss_pred             CCCChhHHHHHHHHHHhhcCCCCCC-----C-hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-----CchHHH
Q 037142           70 NHENLSMKRIATWTLSNLCGGKPRP-----I-FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-----KNDEIQ  138 (383)
Q Consensus        70 ~~~~~~~~~~a~~~L~~l~~~~~~~-----~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~  138 (383)
                      +..|.+.....+.++..+.......     . ......++..++.+-..++.++...++..=+.++...     ......
T Consensus       307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~  386 (1023)
T 4hat_C          307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE  386 (1023)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            2335666666666665554432110     0 1111233445666656677787776665544444210     011223


Q ss_pred             HHHHhCcHHHHHHhcCCCC---------hh------------hHHHHH-HHHhhhhcCCCccccceecCCChHHHHHhh-
Q 037142          139 AVIEAGVCPRLVKLLGHPS---------QS------------VLTQAL-HTVGNIARGDYSQTLYIINCGALPYLLGLL-  195 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~---------~~------------v~~~a~-~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll-  195 (383)
                      .++.. +++.++..+..++         .+            ...... .+|..++.-.        ....++.+.+.+ 
T Consensus       387 ~~~~~-L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~--------~~~~~~~~~~~l~  457 (1023)
T 4hat_C          387 EICSQ-LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN--------VIDTEEIMISKLA  457 (1023)
T ss_dssp             HHHHH-HHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccC--------HHHHHHHHHHHHH
Confidence            33332 5666666665432         00            111111 2222222111        112333344433 


Q ss_pred             ---cc-ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-----CchhHHHHHHHHHHHhcCCC--CHHH
Q 037142          196 ---ID-NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-----AVFYIKKEAAWAISNATFGG--THEQ  264 (383)
Q Consensus       196 ---~~-~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~--~~~~  264 (383)
                         .. ..+...++.++++++.++.+..+....-.-..+++.|+.++.+     +...++..++|+++..+..-  .++.
T Consensus       458 ~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~  537 (1023)
T 4hat_C          458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF  537 (1023)
T ss_dssp             HHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence               33 1278889999999999987654432322234467788888764     44567778899999876542  2233


Q ss_pred             HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          265 IKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       265 ~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      ...     ++..|++.+..+++.++..|++++.++++.+..
T Consensus       538 L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          538 LRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            222     677788888888899999999999999997664

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.84  E-value=0.0011  Score=66.61  Aligned_cols=252  Identities=10%  Similarity=-0.004  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHhcCChHH-H-----------HHHHhcCChHHHHHHhcC----CCChhHHHHHHHHHHhhcCCC----
Q 037142           32 DIRMQSVWALGNIAAESPRF-R-----------DLVLGEAALIPLLTQLNN----HENLSMKRIATWTLSNLCGGK----   91 (383)
Q Consensus        32 ~i~~~a~~~L~~l~~~~~~~-~-----------~~~~~~g~i~~L~~~L~~----~~~~~~~~~a~~~L~~l~~~~----   91 (383)
                      +.....+..+..++...... .           ..+  ...++.++.+...    ..+..+...++++...++...    
T Consensus       311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~  388 (971)
T 2x1g_F          311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS  388 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence            66666777777666432221 1           111  1334445554422    236788889998888876411    


Q ss_pred             ----CCCC----hhhhhchhHHHHHhhccC-C--------------HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHH
Q 037142           92 ----PRPI----FDQVRPCLPTLAQLVHSN-D--------------EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR  148 (383)
Q Consensus        92 ----~~~~----~~~~~~~i~~l~~ll~~~-~--------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~  148 (383)
                          ....    ......+++.++..+.-+ +              .+.|..+..++..++..........     +++.
T Consensus       389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~  463 (971)
T 2x1g_F          389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEI-----LAAM  463 (971)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHH
Confidence                0111    112244555555555311 1              1456667777777776512122222     2333


Q ss_pred             HHHhcCC-----CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh---c--cccchhHHHHHHHHHHHHhcCC
Q 037142          149 LVKLLGH-----PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL---I--DNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       149 l~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll---~--~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      +-..+.+     .++..+..++.+++.++.+......     ..++.++.++   .  +. ++.++..++++++.++..-
T Consensus       464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l  537 (971)
T 2x1g_F          464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWL  537 (971)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHH
Confidence            3333332     6788999999999999876553221     3344444433   2  23 7899999999999887421


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHH
Q 037142          219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKAL  296 (383)
Q Consensus       219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l  296 (383)
                      ....+.+  ..+++.++..+ +  +.++..|++++.+++..+......++  ..++..+..++..+  +.+.+..+..++
T Consensus       538 ~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai  610 (971)
T 2x1g_F          538 MENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSI  610 (971)
T ss_dssp             C----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred             hcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            1111111  22455666666 2  78999999999999976433323332  24677777777763  568888899999


Q ss_pred             HHHHHhc
Q 037142          297 ENILKVG  303 (383)
Q Consensus       297 ~~l~~~~  303 (383)
                      ..++...
T Consensus       611 ~~i~~~~  617 (971)
T 2x1g_F          611 GKLMSLL  617 (971)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhC
Confidence            9998753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00083  Score=56.87  Aligned_cols=187  Identities=14%  Similarity=0.073  Sum_probs=128.3

Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhhcCCCCCC-----ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc----
Q 037142           64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRP-----IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN----  134 (383)
Q Consensus        64 L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----  134 (383)
                      +-+-| .+.+...|..++..+..+....+..     .........+.+.+.+.+.+..++..++.++..++.....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55677 6889999999999988877654221     1112355677788889999999999999999988764111    


Q ss_pred             -hHHHHHHHhCcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          135 -DEIQAVIEAGVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       135 -~~~~~~~~~~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                       ........ .+++.++.- +.+....++..+..++..++.......      .+++.+...+.+. ++.++..++..|.
T Consensus        93 ~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred             cchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence             11122222 367878764 788889999999998888774432111      2356677788888 9999999999998


Q ss_pred             HHhcC--CHH-HHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142          213 NITAG--NRE-QIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       213 nl~~~--~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                      .+...  ... .....+ ..+++.+..++.+.++.||..|..++..+....
T Consensus       165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            87642  100 001111 124556788889999999999999998887653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.74  E-value=0.0043  Score=62.95  Aligned_cols=101  Identities=11%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-----cCchhHHHHHHHHHHHhcCCC--CHHHHHHHHHcC
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-----NAVFYIKKEAAWAISNATFGG--THEQIKYLEREG  272 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~  272 (383)
                      +...++.++++++.++.........-+-..+++.+..+..     .+.+.++..++|+++..+..-  .++...     .
T Consensus       466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~  540 (1049)
T 3m1i_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----T  540 (1049)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----H
T ss_pred             CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----H
Confidence            6678999999999987643222111111223444444332     134556667999999876431  122222     2


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      +++.+++.+.++++.++..|++++.++++.+..
T Consensus       541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888999999999999999987653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.74  E-value=0.00012  Score=65.98  Aligned_cols=244  Identities=15%  Similarity=0.094  Sum_probs=156.9

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHh---c--------CC-CChhHHHHHHHHHH
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL---N--------NH-ENLSMKRIATWTLS   85 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L---~--------~~-~~~~~~~~a~~~L~   85 (383)
                      ..+.|+.-|-++.+++|.-|+-+|..+........-.....+. ...++++   .        ++ .-..+|+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4667777788899999999999999887422110000000111 2222222   1        11 23579999999999


Q ss_pred             hhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHH
Q 037142           86 NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQAL  165 (383)
Q Consensus        86 ~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~  165 (383)
                      .+ .+-+..     ..++..++..+..+.++++.-++..|..+..- -..     . .++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DL-L~~-----L-d~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEF-VED-----K-DGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGG-CCC-----H-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHH-HHH-----H-HHHHHHHHhhcCCcccHHHHHHH
Confidence            99 554433     33444444555778899999999999999332 111     2 24788999999999999999999


Q ss_pred             HHHhhhhcCCCccccceecCCChHHHHHhhccccc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          166 HTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHK-TSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       166 ~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~-~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      .+|.-++  .+....     .++..+...|.+.++ ..-....+..|+.++..+..   .-.+...+|.|...+.|.-..
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence            9999888  222221     456667777765322 22344556677777654421   111347899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL  296 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l  296 (383)
                      ||..+..++..+.   .....+.+        .-.++-.++++++..+..+-
T Consensus       391 VR~AVL~TL~tfL---~~~~LRLI--------FQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          391 VRTSILNMVKNLS---EESIDFLV--------AEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHTTTCC---CHHHHHHH--------HHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hhhHHHHH--------HHHHHhCCcHHHHHHHHHHH
Confidence            9999999998887   22322222        12244567778877666544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.72  E-value=0.00027  Score=58.54  Aligned_cols=184  Identities=13%  Similarity=0.045  Sum_probs=123.3

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcccccee
Q 037142          104 PTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYII  183 (383)
Q Consensus       104 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  183 (383)
                      +.+...+.+.|..-+..++..|...... ..+......+. +++.+.-.+.+++..+...++.+|..+...-...--.+.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~-~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHH-CHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            3456666677877777777777776654 23222222221 344444445578999999999888887521110000121


Q ss_pred             c---CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC
Q 037142          184 N---CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG  260 (383)
Q Consensus       184 ~---~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  260 (383)
                      +   .-++|.|+.-+.+. .+.+|..+-.++..+..-.+       -..+++.+.+-+.+.+...|.+++..+..+....
T Consensus       127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            1   24678899988888 88899888777766643111       1235667788888899999999999999886432


Q ss_pred             CHHHHHHHHHcCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 037142          261 THEQIKYLEREGCI---KPLCDLLLCPDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       261 ~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~al~~l~~l~~~~  303 (383)
                      +..      ....+   +.+..++.+.|..|+..|+.++..+....
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            211      23468   99999999999999999999998887654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.69  E-value=0.0029  Score=63.53  Aligned_cols=146  Identities=14%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             HHHHHHhc----CCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhh---ccccchhHHHHHHHHHHHHhcCC
Q 037142          146 CPRLVKLL----GHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLL---IDNHKTSIKNYACWIISNITAGN  218 (383)
Q Consensus       146 i~~l~~~L----~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll---~~~~~~~~~~~a~~~l~nl~~~~  218 (383)
                      .+.+...+    .+.++..+..++.+++.++.+.....     ...++.++..+   ..+ ++.++..++++++.++..-
T Consensus       447 ~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l  520 (963)
T 2x19_B          447 YDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWL  520 (963)
T ss_dssp             HHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHH
Confidence            34444445    55788899999999999997654322     23455555544   334 7789999999999987421


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHH
Q 037142          219 REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC--PDPQIVTVCLKAL  296 (383)
Q Consensus       219 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~l  296 (383)
                      ....+.  -..+++.++..+.+  +.++..|++++.+++..+......++  ..++..|..++..  -+.+.+..+..++
T Consensus       521 ~~~~~~--l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai  594 (963)
T 2x19_B          521 ADHPVM--INSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQAL  594 (963)
T ss_dssp             HHCHHH--HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HhCHHH--HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            111111  24678888888854  78999999999999864321111111  1244555555554  2567888899999


Q ss_pred             HHHHHhc
Q 037142          297 ENILKVG  303 (383)
Q Consensus       297 ~~l~~~~  303 (383)
                      ..++...
T Consensus       595 ~~i~~~~  601 (963)
T 2x19_B          595 GFLLSAL  601 (963)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9998654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.63  E-value=0.0048  Score=51.07  Aligned_cols=182  Identities=13%  Similarity=0.056  Sum_probs=128.0

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc---CCCChhHHHHHHHHHHhhc----
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN---NHENLSMKRIATWTLSNLC----   88 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~---~~~~~~~~~~a~~~L~~l~----   88 (383)
                      .-+=+.+...|-+.|..-+..++..|.......++   .+.  ..+..+++++.   .+.+..+...++.+|..+.    
T Consensus        45 ~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~  119 (266)
T 2of3_A           45 NQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR  119 (266)
T ss_dssp             TTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            33666777777788888899898888876644332   222  22344444432   3568888888887777663    


Q ss_pred             CCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           89 GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        89 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      ...+.........++|.|+.-+-+....+|..+-.++..++.- .++       ..+++.++..+++.+...+..++..+
T Consensus       120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l  191 (266)
T 2of3_A          120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VGP-------LKMTPMLLDALKSKNARQRSECLLVI  191 (266)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HCH-------HHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CCH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            3222223333467899999999999889998888887776643 111       12567888899999999999999999


Q ss_pred             hhhhcCCCccccceecCCCh---HHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          169 GNIARGDYSQTLYIINCGAL---PYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       169 ~~l~~~~~~~~~~l~~~~~i---~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      ..+.....-.     ....+   +.+..++.+. +..+|..|+.++..+-.
T Consensus       192 ~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          192 EYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            9998543322     23467   9999999998 99999999999886543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.54  E-value=0.018  Score=57.78  Aligned_cols=225  Identities=14%  Similarity=0.129  Sum_probs=127.8

Q ss_pred             CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHH
Q 037142           71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLV  150 (383)
Q Consensus        71 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~  150 (383)
                      +.+...++.++++++.++.............+++.+..+ .++++.++..++|+++.++.. -... ..... .+++.++
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~-l~~~-~~~l~-~vl~~l~  535 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEW-LADH-PVMIN-SVLPLVL  535 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHH-HHHC-HHHHT-TTHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHH-HHhC-HHHHH-HHHHHHH
Confidence            457788999999999999875332212223344433222 235788999999999998864 1111 22333 5889999


Q ss_pred             HhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHHHHHHHHHHHHhcCCH-HHHHHHHhc
Q 037142          151 KLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKNYACWIISNITAGNR-EQIQAVIDA  228 (383)
Q Consensus       151 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~~a~~~l~nl~~~~~-~~~~~~~~~  228 (383)
                      ..|.+  +.++..|+.++..++..........+ ..++..+..++... .+...+..++.+++.++...+ +.....++ 
T Consensus       536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-  611 (963)
T 2x19_B          536 HALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-  611 (963)
T ss_dssp             HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-
T ss_pred             HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-
Confidence            99865  78999999999999965432211111 13344445555542 146788888899998875432 33333332 


Q ss_pred             CChHHHHHHhh----cC-chhHHHH---HHHHHHHhcCCC----C-----------------HHHHHHHHHcCChHHHHh
Q 037142          229 GLIGPLVNLLQ----NA-VFYIKKE---AAWAISNATFGG----T-----------------HEQIKYLEREGCIKPLCD  279 (383)
Q Consensus       229 ~~l~~L~~ll~----~~-~~~v~~~---a~~~l~~l~~~~----~-----------------~~~~~~l~~~~~i~~L~~  279 (383)
                      .+++.+...+.    .+ +++.+..   ...+|+.+...-    +                 +.-...+ ...+++.+..
T Consensus       612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  690 (963)
T 2x19_B          612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQVFQLIQK  690 (963)
T ss_dssp             HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHHHHHHHH
Confidence            24444444443    22 4444443   233333322110    0                 0001111 1235565555


Q ss_pred             hcC--CCCHHHHHHHHHHHHHHHHhch
Q 037142          280 LLL--CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       280 ll~--~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++.  ..++.+.+.++.++..++...+
T Consensus       691 ~l~~~~~~~~v~e~~~~~l~~~~~~~~  717 (963)
T 2x19_B          691 VLSKWLNDAQVVEAVCAIFEKSVKTLL  717 (963)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHhccCchHHHHHHHHHHHHHHHhhc
Confidence            554  3467888888888888876433

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.52  E-value=0.0018  Score=52.35  Aligned_cols=163  Identities=12%  Similarity=0.033  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 037142          205 NYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCD  279 (383)
Q Consensus       205 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~  279 (383)
                      .+|+..+..++++ ++.+..+++.++.-.|..+++..     -..+|-.+..+++.+....+++.+.++.+.+++|..++
T Consensus        74 cnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            4566666667664 58888999999988888888753     35789999999999998889999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          280 LLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       280 ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      .++.++.-.+..|...+..++..+.......   ...+.+..+..-.  -..+..+.+++++.+.+.......++.+...
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC---~t~eRF~av~~vL--~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYIC---QTYERFSHVAMIL--GKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHT---SSHHHHHHHHHHH--HHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHH---ccHHHHHHHHHHH--HHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            9999999889999999999998766543221   1111122211111  1233466778888887777666666655543


Q ss_pred             C-----CCCcccccccccc
Q 037142          360 V-----GPQPGLLYAGNEE  373 (383)
Q Consensus       360 ~-----~~~~~~~~~~~~~  373 (383)
                      .     .-+|..+|+++..
T Consensus       228 ar~aL~~~LP~~Lrd~tf~  246 (268)
T 2fv2_A          228 AREALRQCLPDQLKDTTFA  246 (268)
T ss_dssp             HHHHHHHHSCGGGTSSTTH
T ss_pred             HHHHHHHhCcHHhhChHHH
Confidence            2     4456666666543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.50  E-value=0.007  Score=60.71  Aligned_cols=145  Identities=12%  Similarity=0.095  Sum_probs=95.0

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC----CCChhHHHHHHHHHHhhcCCCCCCChhhhhchhH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN----HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLP  104 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~  104 (383)
                      .++..++.++|+++.++....+....-.-..+++.|+.++..    ++...++..++|+++.+++.-. ........++.
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~vl~  543 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTVIL  543 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            679999999999999997543322211113456778887732    1234456678899999876431 12234567777


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhccCCCchHHH--------HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142          105 TLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQ--------AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus       105 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                      .+...+.++++.++..|++++.++|.. ......        ...+ .++..+......-+++-+..+..+++.++...+
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~-c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK-CKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH-HTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            777877778899999999999999965 221110        0111 133444444455566777888899998887654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.46  E-value=0.028  Score=47.67  Aligned_cols=300  Identities=15%  Similarity=0.130  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhc-
Q 037142           33 IRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH-  111 (383)
Q Consensus        33 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~-  111 (383)
                      +...+...|+.+. +++...+-+++.+++..+...+ +-++.++.+..+..|...+... ..........+|.++..+. 
T Consensus       259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhcc
Confidence            4455555555555 4568888899999999999999 7889999999999999887543 2222334778999998887 


Q ss_pred             cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-------CChh-------hHHHHHHHHhhhhc----
Q 037142          112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-------PSQS-------VLTQALHTVGNIAR----  173 (383)
Q Consensus       112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-------~~~~-------v~~~a~~~L~~l~~----  173 (383)
                      +++.++.....+.|.|...+ ..+-.+..+..+.++.+...+..       .+..       +...+++++.|+..    
T Consensus       336 h~eDdvvYSGTGFLSNVVAH-Kq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP  414 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAH-KQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP  414 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTT-CHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             CCCcceEEecchHHHHHHhc-ccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence            67899999999999999988 66666667778888888776643       2222       33444555555531    


Q ss_pred             -CCCc----------cccceecCCChHHHHHhhcccc-----chhHHHHHHHHHHHHhcCCH---HH----HHHHHhcCC
Q 037142          174 -GDYS----------QTLYIINCGALPYLLGLLIDNH-----KTSIKNYACWIISNITAGNR---EQ----IQAVIDAGL  230 (383)
Q Consensus       174 -~~~~----------~~~~l~~~~~i~~l~~ll~~~~-----~~~~~~~a~~~l~nl~~~~~---~~----~~~~~~~~~  230 (383)
                       .+..          ....+++..+++.++.+|+-+.     --++|...++.+--+.....   +.    .+.....+.
T Consensus       415 m~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NL  494 (619)
T 3c2g_A          415 TPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENL  494 (619)
T ss_dssp             CTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCH
T ss_pred             cCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhh
Confidence             1111          1233556677888888886431     23455566665554443221   10    011111233


Q ss_pred             hHHHHHHhh-----cC-------chhHHHHHHHHHHHhcCCC-CHHH-HHHHHHcCChHHHHhhcCCC--CHHHHHHHHH
Q 037142          231 IGPLVNLLQ-----NA-------VFYIKKEAAWAISNATFGG-THEQ-IKYLEREGCIKPLCDLLLCP--DPQIVTVCLK  294 (383)
Q Consensus       231 l~~L~~ll~-----~~-------~~~v~~~a~~~l~~l~~~~-~~~~-~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~  294 (383)
                      +..+.-.+.     ..       ..++-+.+...+..+...+ ...+ .+.+   -.+..=+++++..  .|....+.+.
T Consensus       495 vGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~  571 (619)
T 3c2g_A          495 IGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLV  571 (619)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHH
Confidence            333332221     11       1123334455555554433 1111 1111   1233344555544  4566667777


Q ss_pred             HHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          295 ALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       295 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      ....+++.++-...              .+. -.-..++.+-+|.++++.+.|..++.+|
T Consensus       572 VcDKILeHcP~~Ad--------------~W~-i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          572 VCDKILEHCPTRAD--------------IWT-IDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             HHHHHHHHCTTHHH--------------HSC-CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhCcchhc--------------cce-echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            77777776653221              111 1234567788999999988888888765

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0049  Score=52.04  Aligned_cols=190  Identities=10%  Similarity=0.074  Sum_probs=124.2

Q ss_pred             HHHhcCCCChhhHHHHHHHHhhhhcCCCccc--c-ceec-CCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH----
Q 037142          149 LVKLLGHPSQSVLTQALHTVGNIARGDYSQT--L-YIIN-CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE----  220 (383)
Q Consensus       149 l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~--~-~l~~-~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~----  220 (383)
                      +-+-|.+.++..|..++..+..+....+...  . .+.. ....+.+...+.+. +..+...++.++..++.....    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            6688999999999999999988775433211  0 0111 13456677788777 999999999999988753211    


Q ss_pred             -HHHHHHhcCChHHHHHH-hhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 037142          221 -QIQAVIDAGLIGPLVNL-LQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN  298 (383)
Q Consensus       221 -~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~  298 (383)
                       ......-..+++.|+.- +.+....++..|..++..++.....  ...     +++.+...+++.+|.++..++..|.+
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQ-----SVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             11111123356666654 5667888998888888777644211  111     35667778889999999999999999


Q ss_pred             HHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          299 ILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       299 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      ++...+.....      ......     ..++.+..++++.+++|+..|..++-.+|..
T Consensus       166 ~l~~fg~~~~~------~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVN------VQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCC------HHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCC------chhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            98764322110      011111     1235567889999999999999988666654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.35  E-value=0.0031  Score=57.08  Aligned_cols=188  Identities=14%  Similarity=0.052  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhh
Q 037142           31 DDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV  110 (383)
Q Consensus        31 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll  110 (383)
                      .-||+.|+.+|+.+ ..-+.-      ..++..++..+ ..+..+++.-++-.|..+ .+-  ..  ...++++.++..+
T Consensus       242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DL--L~--~Ld~Vv~aVL~GL  308 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEF--VE--DKDGLCRKLVSLL  308 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGG--CC--CHHHHHHHHHHHT
T ss_pred             eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHH--HH--HHHHHHHHHHhhc
Confidence            46899999999988 543322      34455555555 566899999998888888 211  11  1578899999999


Q ss_pred             ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CC-hhhHHHHHHHHhhhhcCCCccccceecCCCh
Q 037142          111 HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PS-QSVLTQALHTVGNIARGDYSQTLYIINCGAL  188 (383)
Q Consensus       111 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  188 (383)
                      .+.|.+++..|+.+|.-++ .  ++....+     +..+...|.+ +| .......+..|+.|+..+..   .-.+...+
T Consensus       309 ~D~DDDVRAVAAetLiPIA-~--p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LV  377 (800)
T 3oc3_A          309 SSPDEDIKLLSAELLCHFP-I--TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERL  377 (800)
T ss_dssp             TCSSHHHHHHHHHHHTTSC-C--SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGG
T ss_pred             CCcccHHHHHHHHHhhhhc-c--hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHH
Confidence            9999999999999999999 3  3344443     3444444433 22 23345566777777765542   12334889


Q ss_pred             HHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          189 PYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       189 ~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      |.|.+++.++ -..||..++.++..+.  .......+++        +++-.++.+++..+..+-
T Consensus       378 PRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          378 KDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHHHHHHHH
T ss_pred             HHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHHHHHHHH
Confidence            9999999999 9999999999998776  2222222221        234456677776665544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.33  E-value=0.0011  Score=66.33  Aligned_cols=278  Identities=10%  Similarity=0.013  Sum_probs=149.6

Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC--hHHHHHHHhcCChHHHHHHhcC-CCChhHHHHHHHHHHhh
Q 037142           11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAES--PRFRDLVLGEAALIPLLTQLNN-HENLSMKRIATWTLSNL   87 (383)
Q Consensus        11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~~L~~-~~~~~~~~~a~~~L~~l   87 (383)
                      ..+++.+.++.+.++|.+  ++++..|+.+|..+....  ++.+..++..=.+...+..+.. ..|.+..+..+..+..+
T Consensus       227 ~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~  304 (980)
T 3ibv_A          227 NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ  304 (980)
T ss_dssp             HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred             HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            345556777888888864  899999999999988543  3333333322011122222211 45666655444333222


Q ss_pred             c------CCCCC-CC-------hhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC----C----chHHHHHHHhCc
Q 037142           88 C------GGKPR-PI-------FDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG----K----NDEIQAVIEAGV  145 (383)
Q Consensus        88 ~------~~~~~-~~-------~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~----~~~~~~~~~~~~  145 (383)
                      +      ...+. ..       .....+.++.++.+..+++.++...++.++..+....    .    .+....++.. +
T Consensus       305 ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~-L  383 (980)
T 3ibv_A          305 GVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKS-L  383 (980)
T ss_dssp             HHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH-H
T ss_pred             HHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH-H
Confidence            1      11121 01       1334678999999999888888887777766554210    0    1222233332 5


Q ss_pred             HHHHHHhcCCCCh----------------hhHHHHHHHHhhhhcCCCccccceecCCChH----HHHH----hhc---cc
Q 037142          146 CPRLVKLLGHPSQ----------------SVLTQALHTVGNIARGDYSQTLYIINCGALP----YLLG----LLI---DN  198 (383)
Q Consensus       146 i~~l~~~L~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~----~l~~----ll~---~~  198 (383)
                      ++.++..++-+++                +.|......+..++.-.++        -+++    .+..    .+.   +.
T Consensus       384 l~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~--------~~l~~~~~~i~~~l~~~l~~~~~~  455 (980)
T 3ibv_A          384 LEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSS--------LFSSYMYSAITSSLSTAATLSPEN  455 (980)
T ss_dssp             HHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHHHHHHHHhcccCCC
Confidence            5555555543111                2222222111111111111        1122    2222    231   23


Q ss_pred             cchhHHHHHHHHHHHHhcCCHHHHHHHH-hcC----ChHHHHHHhh-----cCchhHHHHHHHHHHHhcCCCC--HHHHH
Q 037142          199 HKTSIKNYACWIISNITAGNREQIQAVI-DAG----LIGPLVNLLQ-----NAVFYIKKEAAWAISNATFGGT--HEQIK  266 (383)
Q Consensus       199 ~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~----~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~--~~~~~  266 (383)
                       +...++.++.+++.++.+-........ ...    +++.+..++.     .+++.++..++++++..+..-.  ++...
T Consensus       456 -~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~  534 (980)
T 3ibv_A          456 -SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIP  534 (980)
T ss_dssp             -HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred             -CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence             677889999999999875422111100 012    3344555544     5689999999999999876531  11111


Q ss_pred             HHHHcCChHHHHh--hcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          267 YLEREGCIKPLCD--LLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       267 ~l~~~~~i~~L~~--ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      .     +++.+++  .+.++++.++..|+.++.++++.+..
T Consensus       535 ~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          535 A-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             H-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             H-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            1     3444555  45566788999999999999998764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.29  E-value=0.00037  Score=57.26  Aligned_cols=18  Identities=33%  Similarity=0.270  Sum_probs=12.8

Q ss_pred             HHhhCCCChHHHHHHHHH
Q 037142           23 VKLLASPSDDIRMQSVWA   40 (383)
Q Consensus        23 ~~lL~~~~~~i~~~a~~~   40 (383)
                      ..++.++++.+|..++..
T Consensus        56 ~~ll~d~~~~VR~~AA~~   73 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRY   73 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHh
Confidence            355677888888887764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.28  E-value=0.021  Score=48.39  Aligned_cols=208  Identities=13%  Similarity=0.089  Sum_probs=150.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc----cceec-CCChHHHHHhhccccchhHHHHHHHHHH
Q 037142          138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT----LYIIN-CGALPYLLGLLIDNHKTSIKNYACWIIS  212 (383)
Q Consensus       138 ~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~-~~~i~~l~~ll~~~~~~~~~~~a~~~l~  212 (383)
                      +.++..+++..++..|..=+-+.+..+..++.++........    +.+.. ..++..|+..   ..++++...+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g---Ye~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG---YESPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG---GGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh---hccchhHhHHHHHHH
Confidence            345556788899999988888899999999998886543221    11111 1223333333   224555555555666


Q ss_pred             HHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 037142          213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLLLCPDPQIV  289 (383)
Q Consensus       213 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~  289 (383)
                      -++. .+.....++..+.+..+.+.++.++.++...|..++-.+.... ......++..   .++...-.++.+++.=++
T Consensus       149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            6554 4577777888788889999999999999999999998887653 3333343432   467777889999999999


Q ss_pred             HHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          290 TVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       290 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+++..|..++..-.+.          ....+++.+..-+..+..++.+++..|+-.|..+..-|....+.
T Consensus       227 RQSlKLLgelLldr~N~----------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             HHHHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhCchHH----------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            99999999999754432          34667777777788889999999999999999888877766554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.25  E-value=0.021  Score=50.78  Aligned_cols=248  Identities=13%  Similarity=0.052  Sum_probs=152.0

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ  108 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~  108 (383)
                      +++..+..|+..+..+...-|+..+..     +..++.+. .+.+..+|.+|+..|-.+|.+      .....+..+|.+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            678899999999999998888887765     57889999 788999999999999999987      337889999999


Q ss_pred             hhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC-ccccceecCCC
Q 037142          109 LVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY-SQTLYIINCGA  187 (383)
Q Consensus       109 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~  187 (383)
                      +++.+++.-...+-++|..+... ++.        +.+..++..+..+++.++..++..|..=...-+ +....-.+.-+
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~-Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKM-DAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHH-CHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhc-ChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            99999988888888888888865 321        233444444444678899998888865443211 11111122234


Q ss_pred             hHHHHHhhccccchhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhh------cCchh----HHHHHHHHHHHh
Q 037142          188 LPYLLGLLIDNHKTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQ------NAVFY----IKKEAAWAISNA  256 (383)
Q Consensus       188 i~~l~~ll~~~~~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~------~~~~~----v~~~a~~~l~~l  256 (383)
                      +..+.+.|.+- ...--.-.+.+|..+-. ......+.+     ++.+.+...      ..+.+    +...+-.++--+
T Consensus       179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            45555666444 33333334444444432 222333332     222222211      01222    222222333333


Q ss_pred             cCCC-CHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhch
Q 037142          257 TFGG-THEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       257 ~~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~  304 (383)
                      +... +.....++++. ++|.+-.+-... ..+.+...+.++..++.++.
T Consensus       253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            3333 45666676654 777655544432 22467778888888887766

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.14  E-value=0.015  Score=58.89  Aligned_cols=232  Identities=12%  Similarity=0.046  Sum_probs=127.7

Q ss_pred             ChHHHHHHhcCCCChhHHHHHHHHHHhhcC----CCCCC--ChhhhhchhHHHHHhhccC-------------------C
Q 037142           60 ALIPLLTQLNNHENLSMKRIATWTLSNLCG----GKPRP--IFDQVRPCLPTLAQLVHSN-------------------D  114 (383)
Q Consensus        60 ~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~i~~l~~ll~~~-------------------~  114 (383)
                      +++.++.+. ..++.++...++.....++.    .....  .......+++.++..+.-+                   +
T Consensus       345 ~l~~ll~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d  423 (1049)
T 3m1i_C          345 AHQYLIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE  423 (1049)
T ss_dssp             HHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred             HHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence            355566665 45578888888888877776    32111  1123355566666655311                   1


Q ss_pred             ---HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcC--CCChhhHHHHHHHHhhhhcCCCccccceecCCChH
Q 037142          115 ---EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG--HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP  189 (383)
Q Consensus       115 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  189 (383)
                         .+.+..+..+|..++.. ....   +... +.+.+-..+.  ..++..+..++.+++.++.........-.-..+++
T Consensus       424 ~d~~~~~~~~~~~L~~l~~~-~~~~---~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~  498 (1049)
T 3m1i_C          424 SDTIQLYKSEREVLVYLTHL-NVID---TEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK  498 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-CHHH---HHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcc-CHHH---HHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence               02344556666666643 2221   1111 3445555554  36788999999999998754322111000012233


Q ss_pred             HHHHhhcc----ccchhHHHHHHHHHHHHhcC---CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCH
Q 037142          190 YLLGLLID----NHKTSIKNYACWIISNITAG---NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       190 ~l~~ll~~----~~~~~~~~~a~~~l~nl~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  262 (383)
                      .+..+...    ..++.++..++++++.++..   +++..     ..+++.++..+.++++.++..|++++.+++..+..
T Consensus       499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-----~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33332221    11455555688999877632   22222     23466777778888899999999999999975332


Q ss_pred             HHH--------HHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          263 EQI--------KYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       263 ~~~--------~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ...        .++  ..++..+..++..-+.+-......++..++...+
T Consensus       574 ~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          574 HFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            211        111  1234444455555555555667777777776543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.032  Score=45.18  Aligned_cols=138  Identities=10%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc----chhHHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHH
Q 037142          162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH----KTSIKNYACWIISNITA-GNREQIQAVIDAGLIGPLVN  236 (383)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~----~~~~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~  236 (383)
                      -+++..|-.++.+++ ....++++++.-.+.++|....    .+.+|-.++++++.++. .+++....+++.+++|....
T Consensus        74 cnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            445556666666554 6666999998888889887542    36788999999999986 45678888889999999999


Q ss_pred             HhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE--------GCIKPLC-DLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       237 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      .|..++.--|.-|.+.+..+...  .....+++..        .++..++ .+.+.+++.+.+.++++-.++...
T Consensus       153 ime~GselSKtvAtfIlqKIL~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHhhccHHHHHHHHHHHHHHhcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            99999999999999999998865  5666665431        1232233 344567778888888877777653

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.84  E-value=0.078  Score=47.26  Aligned_cols=123  Identities=16%  Similarity=0.207  Sum_probs=96.3

Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH
Q 037142           72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK  151 (383)
Q Consensus        72 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~  151 (383)
                      .+...++-|+..+.....+-|    .....++..++.+.+++|..+|.+|+..|..+|..   +.+..     +...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHHHH
Confidence            368889999999999988765    34567899999999999999999999999999975   33333     5678899


Q ss_pred             hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHh
Q 037142          152 LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT  215 (383)
Q Consensus       152 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~  215 (383)
                      +|..+++.-...+-.+|..+...++.        +.+..+..-+.++ ++.+|+.++..|..-.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHHH
Confidence            99998887777777777777665553        4466666666667 8899999998886543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.79  E-value=0.026  Score=46.08  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=104.8

Q ss_pred             CCChHHHHHhhccc----------cchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          185 CGALPYLLGLLIDN----------HKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       185 ~~~i~~l~~ll~~~----------~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      .+++..|+.+|...          .+......++++|..+... ....+.++ ..+.+..+...+.++++.+|..+...|
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            35566666555421          1346677889999888644 46666666 466788888888889999999999888


Q ss_pred             HHhcCCCC----HHHH-HH------HHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHH
Q 037142          254 SNATFGGT----HEQI-KY------LEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQ  321 (383)
Q Consensus       254 ~~l~~~~~----~~~~-~~------l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~  321 (383)
                      +.+|...+    .+.. ..      .-+..-+..+++.++. .+.+.+..++..+..++...+..+       ..-.++.
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~  193 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRS  193 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHH
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHH
Confidence            88876542    2211 11      1123467778888874 456777777776666666544322       1235667


Q ss_pred             HHHHhccHHHHHHHhcCCCHHHHHHHH
Q 037142          322 LVEEAKGLEKIENLQRHDNYEIHEKSA  348 (383)
Q Consensus       322 ~l~~~~~~~~L~~l~~~~~~~v~~~a~  348 (383)
                      -|..+|..+.+..+...+++++.....
T Consensus       194 ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          194 ELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            788999999999998888888755544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.77  E-value=0.042  Score=55.20  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=69.5

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC-----chhHHHHHHHHHHHhcCCC--CHHHHHHHHHcC
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA-----VFYIKKEAAWAISNATFGG--THEQIKYLEREG  272 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~  272 (383)
                      +....+.++|+++.++..-.+..+.-+=..+++.|..+..++     ...++...+|+++..+..-  .++....     
T Consensus       492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----  566 (1073)
T 3gjx_A          492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----  566 (1073)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----
T ss_pred             CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----
Confidence            577889999999999743322222111123566666666544     2345666678888876541  1233333     


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhc
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAE  306 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~  306 (383)
                      ++..|++.+.++++.++..|+.++..++..+...
T Consensus       567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          567 VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6888889999999999999999999999988754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.71  E-value=0.049  Score=54.71  Aligned_cols=295  Identities=12%  Similarity=0.055  Sum_probs=163.3

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~   97 (383)
                      +..++..+.+++++.|.+|-..|..+-...          ++...+..+|..+.++.++..|+.+|.+..... ......
T Consensus        30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e   99 (1073)
T 3gjx_A           30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN   99 (1073)
T ss_dssp             HHHHHHTTTCSSHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence            444555566667777777777776665432          334445555655668899999999999887753 212222


Q ss_pred             hh----hchhHHHHHhhcc-----CCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           98 QV----RPCLPTLAQLVHS-----NDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        98 ~~----~~~i~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      ..    ..++..+.+....     .++.++...+.++..++...-++..     .++++.++..+.. ++......+.+|
T Consensus       100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL  173 (1073)
T 3gjx_A          100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVIL  173 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            22    3444545444322     3467778888888888854111111     1355666666643 344556677777


Q ss_pred             hhhhcCCCcc-------------ccceecC--CChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHH
Q 037142          169 GNIARGDYSQ-------------TLYIINC--GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGP  233 (383)
Q Consensus       169 ~~l~~~~~~~-------------~~~l~~~--~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~  233 (383)
                      ..++..-.+.             .+.+...  .++..+..++....++.+...++.+++.+..--+  ...+++.++++.
T Consensus       174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~  251 (1073)
T 3gjx_A          174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLIST  251 (1073)
T ss_dssp             HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHH
T ss_pred             HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHH
Confidence            7776441110             0011111  1233344445444477888889999998876432  345667777777


Q ss_pred             HH-HHhhcCchhHHHHHHHHHHHhcCCCC---HHHHHHHHHcCChHHHHhhc-------------CCCCHHHHHHHHHHH
Q 037142          234 LV-NLLQNAVFYIKKEAAWAISNATFGGT---HEQIKYLEREGCIKPLCDLL-------------LCPDPQIVTVCLKAL  296 (383)
Q Consensus       234 L~-~ll~~~~~~v~~~a~~~l~~l~~~~~---~~~~~~l~~~~~i~~L~~ll-------------~~~~~~v~~~al~~l  296 (383)
                      +. ..+  ++++.|..|+.+|..+.....   .+....+.. +++..+..++             ...|.+.....+..+
T Consensus       252 L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~-~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f  328 (1073)
T 3gjx_A          252 LIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFT-LTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFL  328 (1073)
T ss_dssp             HHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHH-HHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred             HHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHH
Confidence            73 444  467899999999999876432   222222221 2222222222             222334444444555


Q ss_pred             HHHHHhchhcccCcCCCCcccHHHHHHHHh--------ccHHHHHHHhcCCCHHHHHHHHHH
Q 037142          297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEA--------KGLEKIENLQRHDNYEIHEKSAKI  350 (383)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~L~~l~~~~~~~v~~~a~~~  350 (383)
                      ..+.+.                +...+...        -+++.|..+..+++.++.+.+...
T Consensus       329 ~~~~e~----------------~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~f  374 (1073)
T 3gjx_A          329 CTFLKE----------------HGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEY  374 (1073)
T ss_dssp             HHHHHH----------------HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHH----------------HHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            544432                22223221        134556677788999998888754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.64  E-value=0.086  Score=44.76  Aligned_cols=173  Identities=14%  Similarity=0.163  Sum_probs=123.4

Q ss_pred             HHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHH
Q 037142          126 SLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN  205 (383)
Q Consensus       126 ~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~  205 (383)
                      .++.-+ ++..+.-++...++..+...+.-++.++..+.++.|...+....-... -+ ...+|.++..+.-..+.++..
T Consensus       267 L~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L-~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          267 LGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PL-ENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cc-cccchHHHHHhccCCCcceEE
Confidence            455555 678888999999999999999999999999999999888754331111 11 256788888776444889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-------CchhHHHHHHHHHHHhcC-------------CC-----
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-------AVFYIKKEAAWAISNATF-------------GG-----  260 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~-------------~~-----  260 (383)
                      ...+.++|.+++....++..+..|.++.|...+..       .+..-|+.||..++|...             ++     
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            99999999999998888888899999999988753       245567778888877641             10     


Q ss_pred             CH---HHHHHHHHcCChHHHHhhcCCCCH------HHHHHHHHHHHHHHH
Q 037142          261 TH---EQIKYLEREGCIKPLCDLLLCPDP------QIVTVCLKALENILK  301 (383)
Q Consensus       261 ~~---~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~al~~l~~l~~  301 (383)
                      ++   .+..++++.++++.|+.+++.+..      +++...+..+.-+++
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence            12   233344455677888888765421      555556665554444

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.54  E-value=0.0036  Score=51.38  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHH
Q 037142            4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWT   83 (383)
Q Consensus         4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~   83 (383)
                      ..+++.+......=....|..+++++++.+|..++..|.                  .+.|..++ ++++..++..++..
T Consensus        61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll-~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADR  121 (244)
T ss_dssp             CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHH-cCCCHHHHHHHHHh
Confidence            345666777766544566777888899999999886421                  13455556 67777777777663


Q ss_pred             HHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHH
Q 037142           84 LSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACW  123 (383)
Q Consensus        84 L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~  123 (383)
                      +   .              .+.+..+++++++.++..++.
T Consensus       122 l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          122 L---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             S---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             C---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            2   1              012445566777777777665

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.49  E-value=0.65  Score=46.51  Aligned_cols=218  Identities=12%  Similarity=0.065  Sum_probs=135.5

Q ss_pred             HHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC---CHHHHHHHHHHHHHhccCCCch----HHH
Q 037142           66 TQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN---DEHVMSNACWGLSLLCDGGKND----EIQ  138 (383)
Q Consensus        66 ~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~----~~~  138 (383)
                      ..+..+.+++.+.+|-..|.++-..+         ++......++.++   ++.++..++.+|.+.....+.+    ...
T Consensus        14 ~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~   84 (980)
T 3ibv_A           14 AALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ   84 (980)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            34433447888888888888876542         2556667777643   6889999998888766531334    444


Q ss_pred             HHHHhCcHHHHHHhcC-CCChhhHHHHHHHHhhhhcCC-CccccceecCCChHHHHHhhccccch-hHHHHHHHHHHHHh
Q 037142          139 AVIEAGVCPRLVKLLG-HPSQSVLTQALHTVGNIARGD-YSQTLYIINCGALPYLLGLLIDNHKT-SIKNYACWIISNIT  215 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~l~~ll~~~~~~-~~~~~a~~~l~nl~  215 (383)
                      .+.+. +++.+...-. .+...++...+.++..+.... +.     .-.++++-++.++..+ +. ......++++..+.
T Consensus        85 ~lr~~-ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~  157 (980)
T 3ibv_A           85 MIRDS-VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIG  157 (980)
T ss_dssp             HHHHH-HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhH
Confidence            44333 5555555211 245678888888888887442 21     1135777788887665 33 33445555655332


Q ss_pred             cC--------CHH--H-----HHHHHhc---CChHHHHHHhh----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037142          216 AG--------NRE--Q-----IQAVIDA---GLIGPLVNLLQ----NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGC  273 (383)
Q Consensus       216 ~~--------~~~--~-----~~~~~~~---~~l~~L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~  273 (383)
                      ..        ...  .     ++.+.+.   .+.+.+..++.    +.++.++..+..++.......+   ...+.+.++
T Consensus       158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~---~~~i~~~~l  234 (980)
T 3ibv_A          158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN---INLIVNEPC  234 (980)
T ss_dssp             HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---HHHHHCHHH
T ss_pred             HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC---HHhhhcchH
Confidence            10        110  0     1222221   11333444443    3677889999999999998755   344455678


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          274 IKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       274 i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++.++.++..  ++++..|+.+|..++....
T Consensus       235 l~~l~~~L~~--~~~r~~A~ecL~ei~~k~~  263 (980)
T 3ibv_A          235 MNLLYSFLQI--EELRCAACETMTEIVNKKM  263 (980)
T ss_dssp             HHHHHHHTTS--HHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCC--hHHHHHHHHHHHHHHHcCC
Confidence            8899988865  7899999999999998654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.30  E-value=0.094  Score=42.14  Aligned_cols=142  Identities=11%  Similarity=0.081  Sum_probs=102.2

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHH-hhccCCHHHHHHHHHHHHHhcc-CCCchHHHHH
Q 037142           63 PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQ-LVHSNDEHVMSNACWGLSLLCD-GGKNDEIQAV  140 (383)
Q Consensus        63 ~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~  140 (383)
                      .+...|.+++.-++|..|+.+|+.+ .        .....++.+.. +..+++..+++.++.++..++. . .++     
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~-~pe-----  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI-EYK-----  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH-CTT-----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc-CHH-----
Confidence            3444444666678999999988887 2        12457788887 6667889999999999999885 2 222     


Q ss_pred             HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC-CChHHHHHhhccccchhHHHHHHHHHHHHhcCCH
Q 037142          141 IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC-GALPYLLGLLIDNHKTSIKNYACWIISNITAGNR  219 (383)
Q Consensus       141 ~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~  219 (383)
                         ..++.+.....+++..++..|...+.-.+.... .   ..+. -+++.+-.+..++ +.-||+...+.|..++..+|
T Consensus       139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~-~---k~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY-F---KENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT-T---TTCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch-h---hcCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence               256888999999999999999988865443211 1   0111 2344444555555 89999999999999999998


Q ss_pred             HHHHHHHh
Q 037142          220 EQIQAVID  227 (383)
Q Consensus       220 ~~~~~~~~  227 (383)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777764

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.97  E-value=0.067  Score=47.13  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=98.0

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHH-HHHH---------
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQ-IKYL---------  268 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~l---------  268 (383)
                      +......++++|..+... ......++ ....+..+...+.+..+.++..|...|+.+|....++. ...+         
T Consensus       133 d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~  211 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  211 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence            456778899999988644 46666676 46678899999999999999999999998887643111 2211         


Q ss_pred             -HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          269 -EREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       269 -~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                       -+..-+..+++.++. .+.+.+..++..+..++...+...       ..-.++..|...|..+.+..+-..+++++...
T Consensus       212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence             123457888898886 466777777776666666543221       12346667889999999999887777776443


Q ss_pred             H
Q 037142          347 S  347 (383)
Q Consensus       347 a  347 (383)
                      .
T Consensus       285 i  285 (383)
T 3eg5_B          285 L  285 (383)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.90  E-value=0.1  Score=41.94  Aligned_cols=145  Identities=14%  Similarity=0.187  Sum_probs=101.8

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcC-CCCCCCh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCG-GKPRPIF   96 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~   96 (383)
                      .++.+..+..++..++|..|+..|+.. ...         ...++.+...+..+.+-.+++.+..++..++. ..+..  
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            345556666777789999999988877 311         12245555534467889999999999999985 33332  


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~  176 (383)
                           .++.+.....+++..+|+.++..+.--+.. +..  ..-. .-+++.+-.+..+++.-|+....+.|..++..++
T Consensus       140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~--k~dp-~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF--KENP-NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT--TTCH-HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh--hcCH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                 667888999999999999999887543322 111  0000 1146777777788999999999999999998888


Q ss_pred             cccccee
Q 037142          177 SQTLYII  183 (383)
Q Consensus       177 ~~~~~l~  183 (383)
                      +.+..++
T Consensus       211 d~V~~~~  217 (240)
T 3l9t_A          211 DLVKIEL  217 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554333

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.48  E-value=0.38  Score=42.41  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=96.8

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHH-HHHH---------
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQ-IKYL---------  268 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~l---------  268 (383)
                      +......++++|..++.. ......++ ....+..+...+.++++.++..+...|..+|....+.. ...+         
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            456778899999888654 45666666 46678888888888899999999888888877643111 1111         


Q ss_pred             -HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          269 -EREGCIKPLCDLLLC-PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       269 -~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                       -+..-+..+++.+.. .+.+.+..++..+..++...+..+       ..-.++.-|..+|..+.+..+...+++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence             123466778888874 456777777777766666554322       12356777889999999999988888877544


Q ss_pred             H
Q 037142          347 S  347 (383)
Q Consensus       347 a  347 (383)
                      .
T Consensus       223 i  223 (386)
T 2bnx_A          223 L  223 (386)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.58  E-value=1.3  Score=45.67  Aligned_cols=312  Identities=10%  Similarity=0.026  Sum_probs=157.7

Q ss_pred             HHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhc-CCCChhHHHHHHHHHHhhcCCC-CCCCh
Q 037142           20 PIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLN-NHENLSMKRIATWTLSNLCGGK-PRPIF   96 (383)
Q Consensus        20 ~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~~~~~~a~~~L~~l~~~~-~~~~~   96 (383)
                      ..+...++. .+.+.|.+|-..|..+-...          .....+...|. .+.+..++..|+..|.+..... .....
T Consensus        15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~   84 (1204)
T 3a6p_A           15 KAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR   84 (1204)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence            333344443 46778888888887764322          23444555443 4567889999999999887543 11122


Q ss_pred             hhhhchhHHHHHhhcc-------CCHHHHHHHHHHHHHhccCCCch-HHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           97 DQVRPCLPTLAQLVHS-------NDEHVMSNACWGLSLLCDGGKND-EIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      .....+=..++..+..       ....++..++.++..++.. .-+ ..     .++++.++.++.. ++.....++.+|
T Consensus        85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~-d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL  157 (1204)
T 3a6p_A           85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR-EWPQHW-----PDMLIELDTLSKQ-GETQTELVMFIL  157 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH-HSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-hCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            2222233334444321       4578889999999988865 211 11     2467778877765 445677788888


Q ss_pred             hhhhcCCCcc--c-----c----ceecC--CChHHHHHhhccc------------------cchhHHHHHHHHHHHHhcC
Q 037142          169 GNIARGDYSQ--T-----L----YIINC--GALPYLLGLLIDN------------------HKTSIKNYACWIISNITAG  217 (383)
Q Consensus       169 ~~l~~~~~~~--~-----~----~l~~~--~~i~~l~~ll~~~------------------~~~~~~~~a~~~l~nl~~~  217 (383)
                      ..++......  .     .    .+.+.  .++..+..++...                  .+..+...++.++.+...-
T Consensus       158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W  237 (1204)
T 3a6p_A          158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW  237 (1204)
T ss_dssp             HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence            8886431100  0     0    00000  1222233333220                  1234556666666655432


Q ss_pred             CHHHHHHHHhcC--ChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHHHHHHHHc---CChHHHHhhcC--------C
Q 037142          218 NREQIQAVIDAG--LIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQIKYLERE---GCIKPLCDLLL--------C  283 (383)
Q Consensus       218 ~~~~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~l~~~---~~i~~L~~ll~--------~  283 (383)
                      -+-  ..+++..  +++.+..++.  +++++..|+.+|..++.... ++....++..   ..+..++....        +
T Consensus       238 i~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e  313 (1204)
T 3a6p_A          238 VSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE  313 (1204)
T ss_dssp             SCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred             cCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc
Confidence            211  1222322  4555554433  67899999999999997642 3332222220   01223344321        1


Q ss_pred             CCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 037142          284 PDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR  358 (383)
Q Consensus       284 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  358 (383)
                      .+.++.+..+..+..+...-...-...........+.      +.++.+.++..+++..+...+...-..++...
T Consensus       314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~------~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~  382 (1204)
T 3a6p_A          314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFG------KYLESFLAFTTHPSQFLRSSTQMTWGALFRHE  382 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHH------HHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHH------HHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence            2345555555555554421110000000000111111      23466666777777777777766555555543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.50  E-value=0.33  Score=41.17  Aligned_cols=136  Identities=7%  Similarity=-0.009  Sum_probs=82.9

Q ss_pred             hhHHHHHhhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCcc
Q 037142          102 CLPTLAQLVHS-NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       102 ~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ++..+...+.+ ..+..+.-++++++|+...  ......+...  .+++.+...+.+++..++..+...+.|++...-..
T Consensus       148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~--~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~  225 (304)
T 3ebb_A          148 FSSHLINLLNPKGKPANQLLALRTFCNCFVG--QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD  225 (304)
T ss_dssp             HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS--HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHccCC--chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence            33344455543 3466788899999999987  4444444322  35566666666788899999999999998431110


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      ...-....++..+..++....+.+....++.++++++..+++..+..-..++-..+-.+..
T Consensus       226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~  286 (304)
T 3ebb_A          226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS  286 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred             CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence            0000011244555566655558889999999999999887554443333444444444443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.31  E-value=1.2  Score=37.67  Aligned_cols=129  Identities=11%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             HHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhc--CChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChhh
Q 037142           23 VKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGE--AALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQ   98 (383)
Q Consensus        23 ~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~   98 (383)
                      ...+.+ ..+..+..+++++.|+... +..++.+...  .+++.+...+ .+++..++..+..++.|++... ..+....
T Consensus       153 ~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          153 INLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            344443 4577899999999999875 4566666542  2233333333 4568889999999999998753 1222223


Q ss_pred             hhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHH-hCcHHHHHHhcCC
Q 037142           99 VRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIE-AGVCPRLVKLLGH  155 (383)
Q Consensus        99 ~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~i~~l~~~L~~  155 (383)
                      ...++..+..+++ .+|.+....++.+|+++... +.+ ...+.+ .|+-..+-...+.
T Consensus       231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~-~~~-~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD-DSN-AVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT-CHH-HHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC-Chh-HHHHHHHcCHHHHHHHHHhC
Confidence            3445555666665 45899999999999999976 433 333333 3443333334433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.27  E-value=0.76  Score=40.42  Aligned_cols=125  Identities=11%  Similarity=0.069  Sum_probs=84.3

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN   73 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~   73 (383)
                      ......+.|+ .+++..|+..|..           .+..++..++.||..+..........+-....+..+...| .+++
T Consensus        98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~  175 (383)
T 3eg5_B           98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV  175 (383)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTS
T ss_pred             CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCc
Confidence            3456677787 5677888888742           2457888999999999865434444444456788888888 7888


Q ss_pred             hhHHHHHHHHHHhhcCCCC-CCChhhh------------hchhHHHHHhhcc-CCHHHHHHHHHHHHHhccC
Q 037142           74 LSMKRIATWTLSNLCGGKP-RPIFDQV------------RPCLPTLAQLVHS-NDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~-~~~~~~~------------~~~i~~l~~ll~~-~~~~~~~~~~~~l~~l~~~  131 (383)
                      +.++..++..|+-+|.... .-....+            ..-+..++..+.+ .+.+.+..+...+..+...
T Consensus       176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~  247 (383)
T 3eg5_B          176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  247 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence            9999999999999998753 2101111            1224455566665 4677777777777777765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.27  E-value=0.72  Score=46.62  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             hhHHHHHhhcc----CCHHHHHHHHHHHHHhccCC---CchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142          102 CLPTLAQLVHS----NDEHVMSNACWGLSLLCDGG---KNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus       102 ~i~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .+..+..++.+    .++.++..++.+++.+....   ........+. .+...+.+.+...+..-+..++++|+|+.. 
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            55566666653    45677777777776665421   1100001111 123344455556777788899999999963 


Q ss_pred             CCccccceecCCChHHHHHhhcc------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh--cCchhHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLID------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ--NAVFYIK  246 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~  246 (383)
                       +         ..++.+.+++..      .....++..|+++|.+++...+...+.        .++++..  ..++++|
T Consensus       470 -p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~--------il~~i~~n~~e~~EvR  531 (1056)
T 1lsh_A          470 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE--------IVLPIFLNVAIKSELR  531 (1056)
T ss_dssp             -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTSCHHHH
T ss_pred             -h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH--------HHHHHhcCCCCChHHH
Confidence             2         246677777642      113568889999999998766554433        4666764  4688999


Q ss_pred             HHHHHHHHHh
Q 037142          247 KEAAWAISNA  256 (383)
Q Consensus       247 ~~a~~~l~~l  256 (383)
                      ..|+..|...
T Consensus       532 iaA~~~Lm~t  541 (1056)
T 1lsh_A          532 IRSCIVFFES  541 (1056)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9998888654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.26  E-value=1.8  Score=43.71  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=111.9

Q ss_pred             hHHHHHHhcCC---CChhHHHHHHHHHHhhc----CCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC
Q 037142           61 LIPLLTQLNNH---ENLSMKRIATWTLSNLC----GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK  133 (383)
Q Consensus        61 i~~L~~~L~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  133 (383)
                      +..+..++...   .++.++..++-+++.+.    .+.+.+....+..+...+.+.+...+.+-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            34455555321   24566776766666664    4434444444566666677777788888889999999999853  


Q ss_pred             chHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcc-ccchhHHH
Q 037142          134 NDEIQAVIEAGVCPRLVKLLGH-------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLID-NHKTSIKN  205 (383)
Q Consensus       134 ~~~~~~~~~~~~i~~l~~~L~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~-~~~~~~~~  205 (383)
                                ..++.+..++..       ....++..|+++|+.+....+..        +-+.++++..+ ..++++|.
T Consensus       471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred             ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHH
Confidence                      246777777642       23468888999999998544321        34567777732 23788999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCH
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~  262 (383)
                      .|+..|.... .+..         .+..+...+.. ++.+|+.-....|.+++....+
T Consensus       533 aA~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          533 RSCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            9988875432 2222         24455556654 6888888888899999887654

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=94.07  E-value=0.62  Score=40.84  Aligned_cols=238  Identities=14%  Similarity=0.015  Sum_probs=120.8

Q ss_pred             hHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHh
Q 037142            7 LEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSN   86 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~   86 (383)
                      +...+..++...+..|+.++.++|+.-|...-.+|..+-..-...|..+. ..+-..+.+++.....-.=....+.+++.
T Consensus       119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgs  197 (403)
T 3fga_B          119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGS  197 (403)
T ss_dssp             HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            34445555556678899999999999999999999988766555555443 22234455555322222223345555665


Q ss_pred             hcCCCCCCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142           87 LCGGKPRPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA  164 (383)
Q Consensus        87 l~~~~~~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a  164 (383)
                      +..+-..+- .....=....|+.+-+.+. ..-..+...|+...... ++.....     ++..++..--..++.=...-
T Consensus       198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~~~-----vi~~LLk~WP~tns~KevlF  271 (403)
T 3fga_B          198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMF  271 (403)
T ss_dssp             HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHTCCSSCHHHHHHH
T ss_pred             HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhHHH-----HHHHHHHhCCCCCcHHHHHH
Confidence            555432221 1111123344444544443 22334455555555544 3322222     22333333333333333333


Q ss_pred             HHHHhhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc
Q 037142          165 LHTVGNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN  240 (383)
Q Consensus       165 ~~~L~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~  240 (383)
                      +.-+..+...-+ ...+. +...++..+..++.++ +-.|.+.|+....|      +....++.   ..++|.+...+..
T Consensus       272 L~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~  343 (403)
T 3fga_B          272 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYR  343 (403)
T ss_dssp             HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence            343444443221 11111 1112455666777787 88888887765422      22222221   2245555555532


Q ss_pred             ----C-chhHHHHHHHHHHHhcCC
Q 037142          241 ----A-VFYIKKEAAWAISNATFG  259 (383)
Q Consensus       241 ----~-~~~v~~~a~~~l~~l~~~  259 (383)
                          . +..++..+..++.-+...
T Consensus       344 ~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          344 NSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             TTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHh
Confidence                2 778888888887776544

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.01  E-value=2.1  Score=43.99  Aligned_cols=268  Identities=12%  Similarity=0.022  Sum_probs=147.2

Q ss_pred             CChHHHHHhh--CCCChHHHHHHHHHHHHHhcC-----ChHHHHHHHhcCChHHHHHHhcC--CCChhHHHHHHHHHHhh
Q 037142           17 GAVPIFVKLL--ASPSDDIRMQSVWALGNIAAE-----SPRFRDLVLGEAALIPLLTQLNN--HENLSMKRIATWTLSNL   87 (383)
Q Consensus        17 g~i~~L~~lL--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~g~i~~L~~~L~~--~~~~~~~~~a~~~L~~l   87 (383)
                      +....+...|  .+.++.+|..|+..|.+....     +++.+..+. ..++..+.+.-..  ..+..++...+.++..+
T Consensus        45 ~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I  123 (1204)
T 3a6p_A           45 PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEM  123 (1204)
T ss_dssp             TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence            4555555544  346889999999999887632     334444443 2333333322111  14578888999999998


Q ss_pred             cCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC------CchHHH----HHHHh--CcHHHHHHhcC
Q 037142           88 CGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG------KNDEIQ----AVIEA--GVCPRLVKLLG  154 (383)
Q Consensus        88 ~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~------~~~~~~----~~~~~--~~i~~l~~~L~  154 (383)
                      +... |.    ...++++.+.+++.+ ++.....++.+|..+++..      ......    .+.+.  .+++.+...+.
T Consensus       124 a~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~  198 (1204)
T 3a6p_A          124 IKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ  198 (1204)
T ss_dssp             HHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8765 32    246788888888866 5566777777877776420      011111    11111  12333333332


Q ss_pred             C-------------------CChhhHHHHHHHHhhhhcCCCccccceecC--CChHHHHHhhccccchhHHHHHHHHHHH
Q 037142          155 H-------------------PSQSVLTQALHTVGNIARGDYSQTLYIINC--GALPYLLGLLIDNHKTSIKNYACWIISN  213 (383)
Q Consensus       155 ~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~l~~ll~~~~~~~~~~~a~~~l~n  213 (383)
                      +                   ++..+...++.++.+...--+.  ..+.+.  .+++.+..++.   ++.++..|+.+|..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~  273 (1204)
T 3a6p_A          199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLI  273 (1204)
T ss_dssp             HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence            2                   2345677788888766543221  112232  25666665554   56899999999999


Q ss_pred             HhcCC--HHHHHHHHh---cCChHHHHHHhh--------cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH----------
Q 037142          214 ITAGN--REQIQAVID---AGLIGPLVNLLQ--------NAVFYIKKEAAWAISNATFGGTHEQIKYLER----------  270 (383)
Q Consensus       214 l~~~~--~~~~~~~~~---~~~l~~L~~ll~--------~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~----------  270 (383)
                      ++...  ++....++.   ...+..++....        ..+.++.+..+.++..+..    . ...++.          
T Consensus       274 i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~  348 (1204)
T 3a6p_A          274 AVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSN  348 (1204)
T ss_dssp             HHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTT
T ss_pred             HHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhH
Confidence            98743  343333332   111334445432        2245667777777766651    1 222221          


Q ss_pred             -cCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 037142          271 -EGCIKPLCDLLLCPDPQIVTVCLKALENIL  300 (383)
Q Consensus       271 -~~~i~~L~~ll~~~~~~v~~~al~~l~~l~  300 (383)
                       .++++.++.++.+++..+-..++..-..++
T Consensus       349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll  379 (1204)
T 3a6p_A          349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALF  379 (1204)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccHHhHHHHHHHHHHHH
Confidence             134666777776666665555554433343

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.95  E-value=0.47  Score=38.53  Aligned_cols=125  Identities=10%  Similarity=0.061  Sum_probs=82.4

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCC----C-------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLAS----P-------SDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN   73 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~----~-------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~   73 (383)
                      .+....+.| ..+++..|+..|..    +       +.+.+..++.||..+..........+-..+.+..+...| .+++
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~  109 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV  109 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTS
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence            345667777 46777777777653    1       457788899999999865544444444456788888888 7888


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCC-hhhh------------hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccC
Q 037142           74 LSMKRIATWTLSNLCGGKPRPI-FDQV------------RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~-~~~~------------~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~  131 (383)
                      ..++..++..|+-+|..+.... ...+            ..-+..++..+. +.+.+.+..+...+..+...
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~  181 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  181 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence            9999999999999988753111 1111            113334555555 34567777777777777766

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=92.32  E-value=1.4  Score=39.30  Aligned_cols=234  Identities=13%  Similarity=0.004  Sum_probs=123.3

Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142           11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~   90 (383)
                      +..++...+..|+.++.++|+.-|...-.+|..+-..-...|..+... +-..+.+++.....-.=....+.+++.+..+
T Consensus       156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG  234 (449)
T 2npp_B          156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING  234 (449)
T ss_dssp             GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred             hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence            344455567789999999999999999999988876544555444322 2344556653333223344667777777766


Q ss_pred             CCCCC-hhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           91 KPRPI-FDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        91 ~~~~~-~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      -..+- .....-....|+.+.+.+. ..-..+...|+...... ++.....     ++..|+..--..++.=...-+.-|
T Consensus       235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~~~-----vi~~LLk~WP~tns~KevlFL~el  308 (449)
T 2npp_B          235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL  308 (449)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence            42221 1111223344555555444 22333455566555544 3322222     233344443334433333334444


Q ss_pred             hhhhcCCC-ccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh---cCChHHHHHHhhc----
Q 037142          169 GNIARGDY-SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID---AGLIGPLVNLLQN----  240 (383)
Q Consensus       169 ~~l~~~~~-~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~----  240 (383)
                      ..+...-+ ...+.+ ...+...+..++++. +-.|.+.|+....|     +.. ..++.   ..++|.+...+..    
T Consensus       309 eeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~  380 (449)
T 2npp_B          309 EEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKT  380 (449)
T ss_dssp             HHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHH
Confidence            44443221 111111 113456667777887 88888888765432     121 22221   2245666666532    


Q ss_pred             -CchhHHHHHHHHHHHhcCC
Q 037142          241 -AVFYIKKEAAWAISNATFG  259 (383)
Q Consensus       241 -~~~~v~~~a~~~l~~l~~~  259 (383)
                       =+..++..|..++.-+...
T Consensus       381 HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          381 HWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CSSTTHHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHHHHH
Confidence             1677888888888777665

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.28  E-value=0.34  Score=35.50  Aligned_cols=78  Identities=8%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHh-ccHHHHHHHhcCCC--------HHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEA-KGLEKIENLQRHDN--------YEI  343 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~L~~l~~~~~--------~~v  343 (383)
                      +++.|.+-|+.+++.++..|+..|..++..+...            +.+-+... ..++.+.+....++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            5778888888889999999999999999765432            34434333 23333333322222        579


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q 037142          344 HEKSAKILETYWCGRVVGP  362 (383)
Q Consensus       344 ~~~a~~~l~~~~~~~~~~~  362 (383)
                      +.+|.+++..+|.++...+
T Consensus       118 R~~AkEl~~ll~d~~~~~~  136 (140)
T 1vdy_A          118 RETAHETISAIFSEENGSG  136 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHHHhCcCCCCC
Confidence            9999999999999877543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.92  E-value=0.29  Score=36.10  Aligned_cols=74  Identities=4%  Similarity=-0.072  Sum_probs=58.0

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +..+..-+.+.++.++..|...|-.+..+++......+.+..++..|..++...++.|+..++..+..-.....
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            44566667788889999999999988888887777676666778888888877788999999988877765443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.84  E-value=4.2  Score=33.34  Aligned_cols=153  Identities=11%  Similarity=0.097  Sum_probs=96.0

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh--------cC
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL--------CG   89 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l--------~~   89 (383)
                      +++.++.+..+++.++|...+..+...+...++....+     ++.|..++ ++.++.+.+.++.+.+++        +.
T Consensus        54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll-~d~d~~V~K~~I~~~~~iY~~~l~~i~~  127 (257)
T 3gs3_A           54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLL-RDNSAQVIKRVIQACGSIYKNGLQYLCS  127 (257)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45556666566888999999998888876555444333     67788888 578899988888766665        33


Q ss_pred             CCCC-----CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc--CCC-ch------------------HH--HHH-
Q 037142           90 GKPR-----PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD--GGK-ND------------------EI--QAV-  140 (383)
Q Consensus        90 ~~~~-----~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~--~~~-~~------------------~~--~~~-  140 (383)
                      ++..     ..+.....+=..++.+..+.+..++..++.++..+..  ... .+                  ..  ..+ 
T Consensus       128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le  207 (257)
T 3gs3_A          128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQ  207 (257)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHH
Confidence            3221     1233345666677888888899999999988876541  100 00                  00  111 


Q ss_pred             -HHhCcHHHHHHhcCCC--ChhhHHHHHHHHhhhhcCCC
Q 037142          141 -IEAGVCPRLVKLLGHP--SQSVLTQALHTVGNIARGDY  176 (383)
Q Consensus       141 -~~~~~i~~l~~~L~~~--~~~v~~~a~~~L~~l~~~~~  176 (383)
                       -..+.+..|+.++.++  ++.....++.+|..++..-+
T Consensus       208 ~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP  246 (257)
T 3gs3_A          208 EEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP  246 (257)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence             1124666677766654  33345677777777776554

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.81  E-value=4.2  Score=35.77  Aligned_cols=152  Identities=10%  Similarity=0.102  Sum_probs=92.9

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCC
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLAS-----------PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN   73 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~   73 (383)
                      .+......|. .+++..|+..|..           .+.+.+..++.||..+..........+-..+.+..+...| .+++
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence            3456677776 4667777777642           1457788899999999865544444454557788888888 6778


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCC-hhhh------------hchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCch-HH-
Q 037142           74 LSMKRIATWTLSNLCGGKPRPI-FDQV------------RPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKND-EI-  137 (383)
Q Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~-~~~~------------~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~-~~-  137 (383)
                      +.++..++..|+.+|..+.... ...+            ..-+..++..+. ..+.+.+..++..+..+... +++ .. 
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~-~~dl~~R  192 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP-AEELDFR  192 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC-CCCHHHH
Confidence            8999999999999998653111 1111            112333444444 44567777777777777766 332 11 


Q ss_pred             ----HHHHHhCcHHHHHHhcCC-CChhh
Q 037142          138 ----QAVIEAGVCPRLVKLLGH-PSQSV  160 (383)
Q Consensus       138 ----~~~~~~~~i~~l~~~L~~-~~~~v  160 (383)
                          ..+...|+ ..++..|+. +++.+
T Consensus       193 ~~LR~Ef~~~GL-~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          193 VHIRSELMRLGL-HQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHHHTTH-HHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHCCh-HHHHHHHhccCChhH
Confidence                12344454 444555554 44433

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=91.39  E-value=0.54  Score=35.67  Aligned_cols=78  Identities=12%  Similarity=0.126  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l  351 (383)
                      .+..|.+-+.++++.++..|+..|..++..++..            +...+....+++.|..+... .++.|++++..++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            3556666677889999999999999999876543            55556666777777777665 6679999999999


Q ss_pred             HHhcCCCCCCC
Q 037142          352 ETYWCGRVVGP  362 (383)
Q Consensus       352 ~~~~~~~~~~~  362 (383)
                      ..+...-..+|
T Consensus       121 ~~W~~~f~~~~  131 (163)
T 1x5b_A          121 VEWSEEFQKDP  131 (163)
T ss_dssp             HHHHHHTTTCS
T ss_pred             HHHHHHhcCCc
Confidence            88776544433

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.77  E-value=0.42  Score=35.23  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILE  352 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~  352 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+....+++.+..+....++.|++++..++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4566667777889999999999999999876643            4445555666777777777788999999999998


Q ss_pred             HhcCCCC
Q 037142          353 TYWCGRV  359 (383)
Q Consensus       353 ~~~~~~~  359 (383)
                      .+...-.
T Consensus       111 ~W~~~f~  117 (140)
T 3ldz_A          111 EWTDEFK  117 (140)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            8765443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.64  E-value=0.96  Score=37.79  Aligned_cols=137  Identities=15%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             ChhhHHHHHHHHhhhhcCCCcccccee-cCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh--cCChHH
Q 037142          157 SQSVLTQALHTVGNIARGDYSQTLYII-NCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID--AGLIGP  233 (383)
Q Consensus       157 ~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~--~~~l~~  233 (383)
                      +......++..|-.++..-....+..- +...+..|+ +.... .+.+++.|.++|+....++|.....+.+  ..++..
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~  118 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK  118 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence            444567777777777754443333222 223333333 22344 6779999999999999999999988875  445555


Q ss_pred             HHHHhhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 037142          234 LVNLLQN-------AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP--DPQIVTVCLKALENILK  301 (383)
Q Consensus       234 L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~  301 (383)
                      +..-|..       ....+.+.-+.+|.-|....  ..   + ....+..|.+++...  +++++..++..+..+..
T Consensus       119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            5554433       23356666677777777662  11   1 134667777777666  88999999999888885

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=90.46  E-value=0.66  Score=34.52  Aligned_cols=74  Identities=8%  Similarity=-0.055  Sum_probs=60.7

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhch
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +..|..-+.+.++.++..|...|-.+..+++......+.+..++.-|+.++..      .++.|+..++..+..-.....
T Consensus        50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  129 (149)
T 3g2s_A           50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  129 (149)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            44566667788999999999999999999888888887788899999998863      467899999998887776543

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.41  E-value=6.9  Score=34.35  Aligned_cols=238  Identities=14%  Similarity=0.077  Sum_probs=119.4

Q ss_pred             hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHH
Q 037142           49 PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSL  127 (383)
Q Consensus        49 ~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~  127 (383)
                      +...+..++...+..|+.++ +++|+.-|...-.+|.++-..-.......-..+-..+.+++... ...-....+.+++.
T Consensus       119 ~~~~k~~id~~Fi~~Ll~lf-dSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgs  197 (403)
T 3fga_B          119 PNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGS  197 (403)
T ss_dssp             HHHHTTTSCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            33344444455677788888 78899888888888887765431111111122333444444422 11112233444444


Q ss_pred             hccCCCc---hHHHHHHHhCcHHHHHHhcCCCChhh-HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhH
Q 037142          128 LCDGGKN---DEIQAVIEAGVCPRLVKLLGHPSQSV-LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSI  203 (383)
Q Consensus       128 l~~~~~~---~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~  203 (383)
                      +..+...   +....+    +...|+.+-+.+.-.. -.....++..+...++....     .++..++..--.. ++.-
T Consensus       198 IinGfa~PLkeehk~f----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~t-ns~K  267 (403)
T 3fga_B          198 IINGFALPLKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKT-HSPK  267 (403)
T ss_dssp             HHHHCCSSCCHHHHHH----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHTCCSS-CHHH
T ss_pred             HHcccCCCchHHHHHH----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHH-----HHHHHHHHhCCCC-CcHH
Confidence            4433211   222222    2344455555543322 24455666666666654332     2233333333222 2222


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---C----ChH
Q 037142          204 KNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---G----CIK  275 (383)
Q Consensus       204 ~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~----~i~  275 (383)
                      ...-+.-+..+.. .++...+.+. ..++..+..++.+++.+|.+.|.....      + +....++..   .    +++
T Consensus       268 evlFL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~wn------N-e~i~~li~~n~~~IlPii~p  339 (403)
T 3fga_B          268 EVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWN------N-EYIMSLISDNAAKILPIMFP  339 (403)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGG------C-HHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHhc------c-HHHHHHHHHhHHHHHHHHHH
Confidence            2223333444443 2333333332 336778888889999999988765541      1 222222221   1    344


Q ss_pred             HHHhhcC-CCCHHHHHHHHHHHHHHHHhchh
Q 037142          276 PLCDLLL-CPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       276 ~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                      .|.+..+ +-+..++..+..++..+.+.+..
T Consensus       340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~  370 (403)
T 3fga_B          340 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQK  370 (403)
T ss_dssp             HHHHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence            4555444 34778888898998887766554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.87  E-value=1.4  Score=32.82  Aligned_cols=76  Identities=12%  Similarity=0.069  Sum_probs=59.3

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..|..++..++.            .+...+....+++.|..+...      .+..|+++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  106 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            456666667889999999999999999987654            366667777888888888763      47899999


Q ss_pred             HHHHHHHhcCCCCC
Q 037142          347 SAKILETYWCGRVV  360 (383)
Q Consensus       347 a~~~l~~~~~~~~~  360 (383)
                      +..++..+...-..
T Consensus       107 il~li~~W~~~f~~  120 (148)
T 1mhq_A          107 VIEILFSWTVWFPE  120 (148)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999887655433

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.84  E-value=1.4  Score=33.62  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+....+++.|..+...      .+.+|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4566777778899999999999999999887643            56667777788888888752      46789999


Q ss_pred             HHHHHHHhcCCCC
Q 037142          347 SAKILETYWCGRV  359 (383)
Q Consensus       347 a~~~l~~~~~~~~  359 (383)
                      +..++..+...-.
T Consensus       119 il~li~~W~~~f~  131 (171)
T 1juq_A          119 VIELLYSWTMALP  131 (171)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999988765543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.63  E-value=9.9  Score=33.21  Aligned_cols=129  Identities=15%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHh
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      ..+...+.-+..+..+.+.  . ++ .++++.++.+..+. +..+|+.++..+...+....+..     ...++.|..++
T Consensus        40 ~~Kl~~L~q~~EL~l~~dp--s-Ll-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL  109 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDP--T-LL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL  109 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCG--G-GG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCH--H-HH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            3566666667776543321  1 22 36888899888887 89999999999988875443332     23566788888


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---------------ChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREG---------------CIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~---------------~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      .+.++.+.+.++.+.+++-    +...++++..+               +-..++.+.++.+..++..+++.+..++-
T Consensus       110 ~d~d~~V~K~~I~~~tslY----pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl  183 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLY----KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV  183 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHH----HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH----HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            8888899998888777763    22333333322               33456677788899999999999988874

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.62  E-value=4.1  Score=36.41  Aligned_cols=233  Identities=14%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccC
Q 037142           53 DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDG  131 (383)
Q Consensus        53 ~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~  131 (383)
                      +..++...+..|+.++ +++|+.-|...-.+|..+-..-.......-..+-..+.+++... ...-....+..++.+..+
T Consensus       156 k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG  234 (449)
T 2npp_B          156 KKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING  234 (449)
T ss_dssp             GGTSCHHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred             hhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence            3344555677888888 78899888888888888776543332222233444455555432 222333455666666655


Q ss_pred             CCc---hHHHHHHHhCcHHHHHHhcCCCChhh-HHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHH
Q 037142          132 GKN---DEIQAVIEAGVCPRLVKLLGHPSQSV-LTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYA  207 (383)
Q Consensus       132 ~~~---~~~~~~~~~~~i~~l~~~L~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a  207 (383)
                      ...   +....+    +...|+.+.+.+.-.. -.....++..++..++....     .++..|+..--.. +..=...-
T Consensus       235 fa~PLKeehk~f----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~-----~vi~~LLk~WP~t-ns~KevlF  304 (449)
T 2npp_B          235 FALPLKEEHKIF----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE-----PVVMALLKYWPKT-HSPKEVMF  304 (449)
T ss_dssp             CCSSCCHHHHHH----HHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHTCCSS-CHHHHHHH
T ss_pred             cCCCCcHHHHHH----HHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHH-----HHHHHHHHhCCCC-CchHHHHH
Confidence            321   222222    2344555555544322 23445666666665554332     2233333333222 22222223


Q ss_pred             HHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhc--
Q 037142          208 CWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLL--  281 (383)
Q Consensus       208 ~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll--  281 (383)
                      +.-+..+.. ..+...+.+. ..++..+..++.+++.+|.+.|.....|       +....++..   .++|.++..+  
T Consensus       305 L~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-------~~i~~li~~n~~~IlPii~p~L~~  376 (449)
T 2npp_B          305 LNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-------EYIMSLISDNAAKILPIMFPSLYR  376 (449)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-------HHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-------HHHHHHHHhchhhhHHhhHHHHHH
Confidence            333444443 2333333332 3367788888899999999887654321       222222221   2344444433  


Q ss_pred             --C-CCCHHHHHHHHHHHHHHHHhch
Q 037142          282 --L-CPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       282 --~-~~~~~v~~~al~~l~~l~~~~~  304 (383)
                        + +-+..++..+..++..+.+.+.
T Consensus       377 ~s~~HWn~~V~~la~~vlk~l~e~d~  402 (449)
T 2npp_B          377 NSKTHWNKTIHGLIYNALKLFMEMNQ  402 (449)
T ss_dssp             CTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence              2 2366788888888887776544

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=89.50  E-value=1.4  Score=32.69  Aligned_cols=75  Identities=15%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR------HDNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~------~~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            |...+....+++.|..+..      ..+..|+++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            4556666777899999999999999999877643            5566777778888888875      357899999


Q ss_pred             HHHHHHHhcCCCC
Q 037142          347 SAKILETYWCGRV  359 (383)
Q Consensus       347 a~~~l~~~~~~~~  359 (383)
                      +..++..+...-.
T Consensus       117 il~li~~W~~~f~  129 (149)
T 3g2s_A          117 ILELLYSWTVGLP  129 (149)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhC
Confidence            9999988766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.44  E-value=0.76  Score=34.84  Aligned_cols=72  Identities=4%  Similarity=-0.035  Sum_probs=57.3

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC-PDPQIVTVCLKALENILKV  302 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~l~~l~~~  302 (383)
                      +..|..-+.+.++.++..|..+|-.+..+++......+.+..++..|+.++.. .++.|+..++..+..-...
T Consensus        54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A           54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            44566677888999999999999999998887777777777788888887765 5778999888877766654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.44  E-value=2.5  Score=36.98  Aligned_cols=137  Identities=15%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 037142          203 IKNYACWIISNITA-GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLL  281 (383)
Q Consensus       203 ~~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll  281 (383)
                      .+...+.-+..++. .++.     +=.++++.++.+-.+++.++|+..+.+|...+.. ..+....     +++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence            45556665666543 2222     2256888899888888999999999999877743 2222222     677888888


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc----ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142          282 LCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD----VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       282 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      .++++.+.+.++.+..++....-..-..   ...    ....+..+...  ...+..+.++.+..|+-.|.+.++.+.
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~---~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMVK---SRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHH---C-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            8899999988888777766422111000   001    12344444333  456777888999999999999888865

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.28  E-value=1.4  Score=32.78  Aligned_cols=73  Identities=8%  Similarity=-0.149  Sum_probs=60.0

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~  303 (383)
                      +..+..-+.+.++.++..|...|-.+..+++......+.+..++..|+.++..      .++.|+..++..+..-....
T Consensus        40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            45566677889999999999999999999888888888788899999998864      36789999988887776543

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=88.61  E-value=2.3  Score=35.57  Aligned_cols=150  Identities=9%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             hchhHHHHHhhccC------CHHHHHHHHHHHHHhccCCCchHHHHHH-HhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142          100 RPCLPTLAQLVHSN------DEHVMSNACWGLSLLCDGGKNDEIQAVI-EAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus       100 ~~~i~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      +.-+..+..+++++      +.+....++..|..++.. ..-..+.+. +...+..|+ +....++.++..+.++|+...
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL   98 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCL   98 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence            44455566666655      455677788888888865 222223332 223344444 334467789999999999999


Q ss_pred             cCCCccccceec--CCChHHHHHhhcc-------ccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcC--
Q 037142          173 RGDYSQTLYIIN--CGALPYLLGLLID-------NHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA--  241 (383)
Q Consensus       173 ~~~~~~~~~l~~--~~~i~~l~~ll~~-------~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--  241 (383)
                      +++|.....+.+  ..++..+..-|..       . ...+++.-+.+|..|...+...     ....+..|..++...  
T Consensus        99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~  172 (315)
T 3qml_C           99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNK  172 (315)
T ss_dssp             TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCC
Confidence            999876665544  3455555544432       2 3467888888888888765222     244667788877766  


Q ss_pred             chhHHHHHHHHHHHhc
Q 037142          242 VFYIKKEAAWAISNAT  257 (383)
Q Consensus       242 ~~~v~~~a~~~l~~l~  257 (383)
                      +..+|..+...+..+-
T Consensus       173 d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          173 DKQLQIKVLELISKIL  188 (315)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            8889998888877665

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=88.37  E-value=9.4  Score=31.28  Aligned_cols=138  Identities=16%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh
Q 037142          202 SIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL  280 (383)
Q Consensus       202 ~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l  280 (383)
                      ..+...+.-...++.. ++...     .++++.++.+..+++.++|+..+.+|...+.. ..+...     .+++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence            4666666666665543 22222     33566667766677889999999998877733 222222     267888888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc----ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142          281 LLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD----VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       281 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      +.++++.+.+.++.+..++....-..-..   ...    ....+..+..  ....+.++.++.+..++-.|.+.++...
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~---~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCS---LMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTT---SSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            99889999999888877776543221111   111    1234444433  3467777888999999999999888765

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=86.57  E-value=1.5  Score=33.51  Aligned_cols=72  Identities=8%  Similarity=-0.002  Sum_probs=58.2

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKV  302 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~  302 (383)
                      +..|..-+.+.++.++..|..+|-.+..+++......+.+..++..|+.++..      .++.|+..++..+..-...
T Consensus        52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45667777888999999999999999998877777777777888999998863      3578999998888777654

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=85.18  E-value=5.7  Score=39.73  Aligned_cols=186  Identities=12%  Similarity=0.027  Sum_probs=113.2

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC---CCChhHHHHHHHHHH--hhcCCCCC
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN---HENLSMKRIATWTLS--NLCGGKPR   93 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~---~~~~~~~~~a~~~L~--~l~~~~~~   93 (383)
                      +.-|+++-.+..++||..|-.+|......-+..+..+     ++.+++.|..   +.+.+-.+-|+++|.  .+... -.
T Consensus       135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~  208 (997)
T 1vsy_5          135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM  208 (997)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence            4566676677889999999999999887655555554     5778888754   444444555666554  22111 12


Q ss_pred             CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCc-----------------------hHHHHH----------
Q 037142           94 PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-----------------------DEIQAV----------  140 (383)
Q Consensus        94 ~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-----------------------~~~~~~----------  140 (383)
                      .+.......++.+++....+.++++..+-.+...+......                       ..+...          
T Consensus       209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~  288 (997)
T 1vsy_5          209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY  288 (997)
T ss_dssp             GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred             cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            34555677888888887766666666555444333321000                       000100          


Q ss_pred             HH---hCcHHHHHHhc-CCCC--hhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHH
Q 037142          141 IE---AGVCPRLVKLL-GHPS--QSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI  214 (383)
Q Consensus       141 ~~---~~~i~~l~~~L-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl  214 (383)
                      ..   .++...++... ....  ......++..|.++....+    ......++..+++.+.++ ++.+|..|+.++..+
T Consensus       289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i  363 (997)
T 1vsy_5          289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLST  363 (997)
T ss_dssp             HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence            11   02333344555 2345  7777777777666653332    234446788888888888 999999999888665


Q ss_pred             h
Q 037142          215 T  215 (383)
Q Consensus       215 ~  215 (383)
                      .
T Consensus       364 l  364 (997)
T 1vsy_5          364 C  364 (997)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=83.24  E-value=40  Score=33.79  Aligned_cols=275  Identities=11%  Similarity=0.055  Sum_probs=142.4

Q ss_pred             HHHhcCCCChhHHHHHHHHHHhhcCCCCCCC----hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142           65 LTQLNNHENLSMKRIATWTLSNLCGGKPRPI----FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQA  139 (383)
Q Consensus        65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (383)
                      ++-|-.+.+..-++.++.+++-+........    .....-+.|.|.+.+. .-.++.......++..+..+.++.....
T Consensus       513 ~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~  592 (997)
T 1vsy_5          513 CESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKT  592 (997)
T ss_dssp             HHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHH
Confidence            3334356678888899999999988763222    2233567888888887 3455555444444444333212212222


Q ss_pred             HHH--------------------------------h-----CcHHHHHHh-cCCCChhhHHHHHHHHhhhhcCCC--cc-
Q 037142          140 VIE--------------------------------A-----GVCPRLVKL-LGHPSQSVLTQALHTVGNIARGDY--SQ-  178 (383)
Q Consensus       140 ~~~--------------------------------~-----~~i~~l~~~-L~~~~~~v~~~a~~~L~~l~~~~~--~~-  178 (383)
                      +++                                .     ..-+.+..+ +.++...|+.....+|..++...-  .. 
T Consensus       593 L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~  672 (997)
T 1vsy_5          593 FFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSIS  672 (997)
T ss_dssp             HHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBS
T ss_pred             HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCC
Confidence            111                                0     111111111 466778999999999988875441  10 


Q ss_pred             -cccee-------------cCCChHH----HH---Hhhcc--------ccc----hh----HHHHHHHHHHHHhcCCHHH
Q 037142          179 -TLYII-------------NCGALPY----LL---GLLID--------NHK----TS----IKNYACWIISNITAGNREQ  221 (383)
Q Consensus       179 -~~~l~-------------~~~~i~~----l~---~ll~~--------~~~----~~----~~~~a~~~l~nl~~~~~~~  221 (383)
                       .+.++             ....-+.    +.   +-+..        ...    ..    .+....|+...+..+....
T Consensus       673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~  752 (997)
T 1vsy_5          673 DPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVL  752 (997)
T ss_dssp             CHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHH
T ss_pred             CHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence             00000             0000111    21   11210        000    01    1112223334443333222


Q ss_pred             HHHHHhcCChHHHHHHhhcCch-hHHHH-HHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHH
Q 037142          222 IQAVIDAGLIGPLVNLLQNAVF-YIKKE-AAWAISNATFGG-THEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALE  297 (383)
Q Consensus       222 ~~~~~~~~~l~~L~~ll~~~~~-~v~~~-a~~~l~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~l~  297 (383)
                      ...++..-++|.++.+....+. ++... |..++..++... .++....     ++..+.+... +++. .+..++..+.
T Consensus       753 l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq  826 (997)
T 1vsy_5          753 LVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQ  826 (997)
T ss_dssp             HHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence            3333332277777777665544 66666 666777775443 4455554     3455666665 4566 7777777766


Q ss_pred             HHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC-HHHHHHHHHHHHHhcCCC
Q 037142          298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN-YEIHEKSAKILETYWCGR  358 (383)
Q Consensus       298 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~-~~v~~~a~~~l~~~~~~~  358 (383)
                      .+.-..-..-       ...      +.....+.+..++.++. -+|++.|...|..+....
T Consensus       827 ~~~f~n~f~l-------~~~------~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~  875 (997)
T 1vsy_5          827 HFLSAELLQL-------TEE------EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW  875 (997)
T ss_dssp             HHHHHHTTTS-------CTT------HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHc-------CHH------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence            5554221100       001      11233567778899999 999999999998775443

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=82.88  E-value=1.6  Score=38.14  Aligned_cols=82  Identities=15%  Similarity=0.014  Sum_probs=51.8

Q ss_pred             HHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142            9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC   88 (383)
Q Consensus         9 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~   88 (383)
                      ..+..++...+..|+.++.++|+.-|.....+|..+-..-...|..+. ..+-..+.+++.....-.=....+.+++.+.
T Consensus       166 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsII  244 (392)
T 2jak_A          166 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSII  244 (392)
T ss_dssp             HHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence            344455556677899999999999999999999887654445554443 2223456666633332233445666666666


Q ss_pred             CCC
Q 037142           89 GGK   91 (383)
Q Consensus        89 ~~~   91 (383)
                      .+-
T Consensus       245 ngf  247 (392)
T 2jak_A          245 NGF  247 (392)
T ss_dssp             HTC
T ss_pred             hcc
Confidence            554

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=82.01  E-value=3.3  Score=33.16  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l  351 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+.+..+++.|..+.. ..+.+|++++..++
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3555666677899999999999999999887642            4444555556666666644 46788999999998


Q ss_pred             HHhcCCCC
Q 037142          352 ETYWCGRV  359 (383)
Q Consensus       352 ~~~~~~~~  359 (383)
                      ..+...-.
T Consensus       111 ~~W~~~f~  118 (220)
T 1dvp_A          111 QTWAYAFR  118 (220)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            87765444

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.81  E-value=2.6  Score=33.84  Aligned_cols=74  Identities=11%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~a~~~l  351 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+....+++.|..++. ..+.+|++++..++
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li  113 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI  113 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3556666677899999999999999999876643            4444555566666666654 46788999999999


Q ss_pred             HHhcCCC
Q 037142          352 ETYWCGR  358 (383)
Q Consensus       352 ~~~~~~~  358 (383)
                      ..+...-
T Consensus       114 ~~W~~~f  120 (226)
T 3zyq_A          114 QAWAHAF  120 (226)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8776544

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=80.76  E-value=6.2  Score=29.54  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 037142          273 CIKPLCDLLL-CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEK-IENLQR---HDNYEIHEKS  347 (383)
Q Consensus       273 ~i~~L~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-L~~l~~---~~~~~v~~~a  347 (383)
                      .+..|..-++ .+++.++..|+..|..++..++.            .+...+....+++. |..+..   .+...|++++
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~------------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki  121 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH------------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV  121 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH------------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence            3455666665 47889999999999999987654            35555666667776 666653   3456899999


Q ss_pred             HHHHHHhcCCCC
Q 037142          348 AKILETYWCGRV  359 (383)
Q Consensus       348 ~~~l~~~~~~~~  359 (383)
                      ..++..+...-.
T Consensus       122 l~li~~W~~~f~  133 (157)
T 1elk_A          122 LNLIQSWADAFR  133 (157)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC
Confidence            999988766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	383
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-66
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-16
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-51
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-15
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-24
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.003
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	7e-07
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	8e-07
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.003
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-05
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  216 bits (550), Expect = 3e-66
 Identities = 184/357 (51%), Positives = 239/357 (66%), Gaps = 8/357 (2%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS T    K VVD  AVP+F++LL + S +++ Q++WALGN+A +S  +RD VL   A+
Sbjct: 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 206

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
            P+L  L N    S+ R ATWTLSNLC GK P+P +  V   LPTLA+L++S D   + +
Sbjct: 207 EPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 265

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
           ACW +S L D G  + IQAVI+  +  RLV+LL H S  V T AL  VGNI  G+  QT 
Sbjct: 266 ACWAISYLSD-GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 324

Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
            +IN G LP L  LL  + K +IK  ACW ISNITAGN EQIQAVIDA LI PLV LL+ 
Sbjct: 325 VVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 383

Query: 241 AVFYIKKEAAWAISNATFGGTH--EQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALEN 298
           A +  KKEA WAISNA+ GG    + I+YL  +GCIKPLCDLL   D +I+ V L ALEN
Sbjct: 384 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 443

Query: 299 ILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
           ILK+GEA+K       ++N+ A  +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 444 ILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 498

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 95  IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154
            + Q++  LP + Q ++S+D     +A      +        I  VI+AGV PRLV+ + 
Sbjct: 70  FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 129

Query: 155 -HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN 213
            +  + +  +A   + NIA G  +QT  +++  A+P  + LL       +K  A W + N
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGN 188

Query: 214 ITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGC 273
           +   + +    V+    + P++ L  +    + + A W +SN   G   +    +     
Sbjct: 189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQA 247

Query: 274 IKPLCDLLLCPDPQIVTVCLKALENIL 300
           +  L  L+   D + +     A+  + 
Sbjct: 248 LPTLAKLIYSMDTETLVDACWAISYLS 274

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 18/335 (5%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAA-ESPRFRDLVLGEAALIPLLTQLNNHENLSMK 77
           +P   + L S     ++ +      I + E     D+V+    +  L+  +  ++   ++
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 78  RIATWTLSNLCGGKPRPIFDQVR-PCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
             A W L+N+  G        V    +P   QL+++    V   A W L  +      D 
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS-TDY 196

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI 196
              V++      ++ L      S++  A  T+ N+ RG   Q  + +   ALP L   LI
Sbjct: 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-KLI 255

Query: 197 DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256
            +  T     ACW IS ++ G +E IQAVID  +   LV LL +    ++  A  A+ N 
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 315

Query: 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDV 316
              G   Q + +   G +  L  LL  P   I       + NI                 
Sbjct: 316 VT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN------------- 361

Query: 317 NQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
            +  Q V +A  +  +  L     Y+  +++   +
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 396

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  175 bits (444), Expect = 2e-51
 Identities = 164/359 (45%), Positives = 219/359 (61%), Gaps = 14/359 (3%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
           IAS T E  KAVVD GA+P F+ LLASP   I  Q+VWALGNIA +   FRDLV+   A+
Sbjct: 84  IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 143

Query: 62  IPLLTQLNNHEN----LSMKRIATWTLSNLCGGKPR-PIFDQVRPCLPTLAQLVHSNDEH 116
            PLL  L   +         R  TWTLSNLC  K   P  D V   LPTL +L+H ND  
Sbjct: 144 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 203

Query: 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176
           V++++CW +S L DG  N+ I+ V++ GV P+LVKLLG     ++T AL  +GNI  G  
Sbjct: 204 VLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 262

Query: 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVN 236
            QT  +I+ GAL     LL  N KT+I+  A W +SNITAG ++QIQ V++ GL+  LV 
Sbjct: 263 EQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 321

Query: 237 LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
           +L  A F  +KEAAWAI+N T GGT EQI YL   G I+PL +LL   D +I+ V L A+
Sbjct: 322 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 381

Query: 297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
            NI +  E        +G+  + + ++EE  GL+KIE LQRH+N  +++ S  ++E Y+
Sbjct: 382 SNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 8/204 (3%)

Query: 98  QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-P 156
            V   +  + + ++SN+      A      L    K   I  +I AG+ P+ V  LG   
Sbjct: 10  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 157 SQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA 216
              +  ++   + NIA G   QT  +++ GA+P     L+ +    I   A W + NI  
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIAG 128

Query: 217 GNREQIQAVIDAGLIGPLVNLLQNAVFY-----IKKEAAWAISNATFGGTHEQIKYLERE 271
                   VI  G I PL+ LL             +   W +SN               E
Sbjct: 129 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVE 187

Query: 272 GCIKPLCDLLLCPDPQIVTVCLKA 295
             +  L  LL   DP+++     A
Sbjct: 188 QILPTLVRLLHHNDPEVLADSCWA 211

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 2/160 (1%)

Query: 138 QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY-IINCGALPYLLGLLI 196
           Q  +   V   +VK +   +     QA      +   +    +  II  G +P  +  L 
Sbjct: 8   QGTVNWSV-EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 197 DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256
               + I+  + W ++NI +G  EQ +AV+D G I   ++LL +   +I ++A WA+ N 
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

Query: 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL 296
              G+  +   ++       L  L +     +    L+ L
Sbjct: 127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
           +I +   +  + VV+HG VP  V +L+      + ++ WA+ N  +     + + L    
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLC-----GGKPRPIFDQVRPC--LPTLAQLVHSN 113
           +I  L  L + ++  + ++    +SN+       G+   +   +  C  L  +  L    
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 417

Query: 114 DEHVMSNA 121
           +E V   +
Sbjct: 418 NESVYKAS 425

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 8e-24
 Identities = 55/422 (13%), Positives = 103/422 (24%), Gaps = 70/422 (16%)

Query: 2   IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
              +    K+ V   G +   V LL SP+ +++  +  AL N+   S   +     +  +
Sbjct: 29  TCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88

Query: 62  IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------- 110
              ++ L    N  +++  T  L NL                    +++           
Sbjct: 89  REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNS 148

Query: 111 ----HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL----- 161
                  D  V  NA   L  L              +G+   L+  + +   +       
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGR-QTMRNYSGLIDSLMAYVQNCVAASRCDDKS 207

Query: 162 ---------TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIIS 212
                      +      +            N        G    N    + N       
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF-SNKSDKMMNNNYDCPL 266

Query: 213 NITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKY----- 267
                N +    +  +  I   +NL+  +      EA                       
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326

Query: 268 LEREGCIKPLCDLLLCPDPQIVTVCLKALENI---------------------LKVGEAE 306
             +E  +  +  LL   +  +V      L N+                     L      
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN 386

Query: 307 KNTDTDI------------GDVNQYAQLVEEAKGLEKIENLQR-HDNYEIHEKSAKILET 353
            +   DI                Q A+    +  L  I NL R   + +  E +  +L  
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

Query: 354 YW 355
            W
Sbjct: 447 MW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 39/358 (10%), Positives = 94/358 (26%), Gaps = 37/358 (10%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           +P  V+ L+S  +  +    + + +   +    +  V  +   I  L  L    N ++++
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSPNQNVQQ 62

Query: 79  IATWTLSNLCGGKP--RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKN-- 134
            A   L NL       +    +       ++ L  + +  +       L  L    +   
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 135 -----------DEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYII 183
                      D +                      V   A   + N++  D  +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 184 NCGALPYLLGLL-------------IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
             G +  L+  +             ++N    + N +  + + +    R+      +A  
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVT 290
                    N    +                 +   +L     I+   +L+         
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLP-EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 291 VCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
                    L   +   ++            +  + KGL +I  L +  N ++    A
Sbjct: 302 EACAGALQNLTASKGLMSSGMS-------QLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 4/166 (2%)

Query: 188 LPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKK 247
           +P  +  L  +     +    + I +    +    Q V   G I  LV+LL++    +++
Sbjct: 4   IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 248 EAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEK 307
            AA A+ N  F  T  +++    +  I+    LL       +   L  L   L   +  K
Sbjct: 63  AAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 308 NTDTDIGDVNQYAQLVEEAKGLEKIEN--LQRHDNYEIHEKSAKIL 351
                        +++    G     +   +   + E+   +   L
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (198), Expect = 3e-17
 Identities = 48/284 (16%), Positives = 102/284 (35%), Gaps = 6/284 (2%)

Query: 17  GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSM 76
            A+P   KLL      +  ++   +  ++ +      ++     +  ++  + N  ++  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 77  KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
            R    TL NL   +   +       +P L +++ S  + V+  A   L  L    +  +
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI 196
           +     AG   ++V LL   +   L      +  +A G+    L I+  G    L+ ++ 
Sbjct: 137 MAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 197 DNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNA 256
                 +      ++  + +       A+++AG +  L   L +    + +   W + N 
Sbjct: 196 TYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 257 TFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENIL 300
               +    K    EG +  L  LL   D  +VT     L N+ 
Sbjct: 255 ----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 33/223 (14%), Positives = 77/223 (34%), Gaps = 2/223 (0%)

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLG 193
           N +  A +     P L KLL    Q V+ +A   V  +++ + S+   + +   +  ++ 
Sbjct: 7   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 194 LLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
            + + +           + N++  +RE + A+  +G I  LV +L + V  +   A   +
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDI 313
            N        ++      G ++ +  LL   + + + +    L+ +    +  K      
Sbjct: 126 HNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 314 GDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC 356
           G       ++      + +    R         S K       
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 2e-13
 Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 23/320 (7%)

Query: 1   SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
            + S    +K A+V+ G +      L  PS  +    +W L N++  + +   +      
Sbjct: 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 270

Query: 61  LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           L+ LL   + +       I +    N    K           L          ++     
Sbjct: 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330

Query: 121 AC-WGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
            C                 AV      P +VKLL  PS   L +A   +        +  
Sbjct: 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390

Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISN--------------------ITAGNR 219
             +   GA+P L+ LL+  H+ + +  +                          I A + 
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 220 EQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCD 279
                +     I   V LL + +  I++ AA  +         E  + +E EG   PL +
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTE 508

Query: 280 LLLCPDPQIVTVCLKALENI 299
           LL   +  + T     L  +
Sbjct: 509 LLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 23/169 (13%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIP 63
           +    +   + + GA+P  V+LL     D + ++                          
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF----------------- 426

Query: 64  LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACW 123
               +       +    T  L  L       I  +    +P   QL++S  E++   A  
Sbjct: 427 ----VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 124 GLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
            L  L    +    +A+   G    L +LL   ++ V T A   +  ++
Sbjct: 483 VLCELAQDKEA--AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 57/402 (14%), Positives = 110/402 (27%), Gaps = 59/402 (14%)

Query: 4   SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL-- 61
           S   E   A+   G +P  VK+L SP D +   ++  L N+       +  V     L  
Sbjct: 88  SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 147

Query: 62  ----------------------------------------IPLLTQLNNHENLSMKRIAT 81
                                                     L+  +  +    +    +
Sbjct: 148 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207

Query: 82  WTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141
             L  L               +  L   +    + ++ N  W L  L D     E     
Sbjct: 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--- 264

Query: 142 EAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI-DNHK 200
             G+   LV+LLG    +V+T A   + N+   +Y   + +   G +  L+  ++    +
Sbjct: 265 -EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 201 TSIKNYACWIISNITAGN---REQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNAT 257
             I   A   + ++T+ +        AV     +  +V LL     +   +A   +    
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 258 FGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL--------ENILKVGEAEKNT 309
                        +G I  L  LL+                        + ++ E     
Sbjct: 384 ALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 310 DTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKIL 351
              +        ++     +     L       I   +A +L
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 43/347 (12%), Positives = 112/347 (32%), Gaps = 39/347 (11%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
           V + +KLL   + +++  +V  LG +     + ++  +    ++  L      +   ++ 
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLV---SKVKEYQVET--IVDTLCTNMLSDKEQLRD 101

Query: 79  IATWTLSNLCGGKPRPIFDQ--VRPCLPTLAQLVHS-----NDEHVMSNACWGLSLLCDG 131
           I++  L  + G  P               +   + S      D  V   A   ++ +   
Sbjct: 102 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 161

Query: 132 GKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYL 191
                +       +   L+  L  P  +V  + +  +G++        +  ++   + +L
Sbjct: 162 QGGLLVNFHPS--ILTCLLPQLTSPRLAVRKRTIIALGHLVM--SCGNIVFVD--LIEHL 215

Query: 192 LGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAW 251
           L  L  N   S        I+ I+     +I   ++  +I  +V         +++    
Sbjct: 216 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK-IIPLVVKFCNVDDDELREYCIQ 274

Query: 252 AISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDT 311
           A  +       E   ++                   I+ +CLK L           + + 
Sbjct: 275 AFESFVRRCPKEVYPHV-----------------STIINICLKYLT---YDPNYNYDDED 314

Query: 312 DIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGR 358
           +  +        ++ +G +   +     ++++   +AK L+     R
Sbjct: 315 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 41/187 (21%)

Query: 19   VPIFVKLLASPSDDIRMQSVWALGNIAA---------------ESPRFRDLVLGE----- 58
              + ++  +SPS++++  + +ALG+I+                  P+ + L+L       
Sbjct: 855  KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 59   ------------AALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTL 106
                          +  LL +         + +    L  L    P  +       LP L
Sbjct: 915  SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-------LPRL 967

Query: 107  AQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALH 166
               + S   +  S+    +              +         +K L  P  +V   AL 
Sbjct: 968  KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALV 1025

Query: 167  TVGNIAR 173
            T  + A 
Sbjct: 1026 TFNSAAH 1032

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 28/250 (11%)

Query: 14  VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN 73
             H  + +  +    P   +R+ ++  L  I +   ++ +  +   AL  +  +    + 
Sbjct: 213 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI 271

Query: 74  LSMKRIATWTLSNLCGGKPRPIFDQ---------------------VRPCLPTLAQLVHS 112
             +        SN+C  +     +                      ++  +P L Q +  
Sbjct: 272 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 331

Query: 113 NDEHVMSN--ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN 170
            DE+   +       + +C        +  I   V P + + + +P       A+   G 
Sbjct: 332 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 391

Query: 171 IARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
           I  G     L  +   A+P L+ L+ D     +++ A W +  I        +A I+   
Sbjct: 392 ILEGPEPSQLKPLVIQAMPTLIELMKDPSV-VVRDTAAWTVGRIC---ELLPEAAINDVY 447

Query: 231 IGPLVNLLQN 240
           + PL+  L  
Sbjct: 448 LAPLLQCLIE 457

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 28/286 (9%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 23  VKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATW 82
            +LL   +   R+ S   L               G    + L  +  + +N   + I  +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLR------------GGQDAVRLAIEFCSDKNYIRRDIGAF 72

Query: 83  TLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIE 142
            L  +   K                  ++     V + A    +  C          +  
Sbjct: 73  ILGQIKICKKCEDNVFN----ILNNMALNDKSACVRATAIESTAQRCKK------NPIYS 122

Query: 143 AGVCPRLVKLLGHPSQSVLTQALHTVG----------NIARGDYSQTLYIINCGALPYLL 192
             +  +        S +V       +            I                   + 
Sbjct: 123 PKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 182

Query: 193 GLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA 252
                + +             +       +    D  ++  L + L+     +  +   A
Sbjct: 183 KYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEA 240

Query: 253 ISNATFGGTHEQIKYLEREGCIKPLCDLLL-CPDPQIVTVCLKALE 297
                          L  +  +  L  +L    D +I+T  +  L+
Sbjct: 241 AGE------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 21/224 (9%), Positives = 50/224 (22%), Gaps = 25/224 (11%)

Query: 15  DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENL 74
              AV + ++  +  +   R    + LG I        +          L     N ++ 
Sbjct: 48  GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSA 101

Query: 75  SMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLS-------- 126
            ++  A  + +  C   P          +            +V     + +S        
Sbjct: 102 CVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATI 157

Query: 127 --LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIIN 184
             L+      +       A                 +         +         Y  +
Sbjct: 158 PLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 217

Query: 185 CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
              L  L   L  N    + +        +  G++  +  +   
Sbjct: 218 KRVLSVLCDELKKNT---VYDDIIEAAGEL--GDKTLLPVLDTM 256

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 14  VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHEN 73
            D     + +  L      IR  +   L  +  +  +        A +IP +  ++   N
Sbjct: 438 FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK----EWAHATIIPKVLAMSGDPN 493

Query: 74  LSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK 133
              +    + ++ L     + I  +    LPT+ ++      +V  N    L  +     
Sbjct: 494 YLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 134 NDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA 172
           N  +Q+ ++    P L KL       V   A   +  ++
Sbjct: 552 NSTLQSEVK----PILEKLTQDQDVDVKYFAQEALTVLS 586

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 24/147 (16%), Positives = 61/147 (41%), Gaps = 4/147 (2%)

Query: 29  PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC 88
           P  D  + ++  L  +A       + ++  + ++ L+ Q    +   +++ +   L +L 
Sbjct: 634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 693

Query: 89  GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPR 148
               + +   +   +P L   ++     V +NA W +  +       E+Q  I   V  +
Sbjct: 694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPM-VLHQ 751

Query: 149 LVKLLGHPS--QSVLTQALHTVGNIAR 173
           LV+++  P+  +++L     T+G +  
Sbjct: 752 LVEIINRPNTPKTLLENTAITIGRLGY 778

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 11/217 (5%)

Query: 3   ASKTLEDKKAVVD-HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
             + LE      D +  +   +  L S  +  R  S   L N       F++   G    
Sbjct: 31  VQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA--HFQNFPNGVTDF 88

Query: 62  I-PLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
           I           +  ++      ++ +        +  +   LP L  L+ S D +    
Sbjct: 89  IKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL---LPKLCSLLDSEDYNTCEG 145

Query: 121 ACWGLSLLCDGGKNDEIQAVIEAG---VCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS 177
           A   L  +C+         V++     + P+ ++   H S  + + A+  V        +
Sbjct: 146 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII-SRT 204

Query: 178 QTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI 214
           Q L +        L  L  D      KN    ++  +
Sbjct: 205 QALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLL 241

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 34/290 (11%), Positives = 87/290 (30%), Gaps = 48/290 (16%)

Query: 19  VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL--NNHENLSM 76
             +    + SP  +IR+ S   L  ++ ++               L +Q+  + +  L  
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEG 57

Query: 77  KRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDE 136
           + +A  TL N    K      Q      T                              +
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWIT------------------------------Q 87

Query: 137 IQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLI 196
           +    +  +    +  L      +   A   +  IA  +     +      +  ++    
Sbjct: 88  VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP---ELMKIMVDNTG 144

Query: 197 DNHKTSIKNYACWIISNITAGNREQIQAVIDA--GLIGPLVNLLQNAVF--YIKKEAAWA 252
                ++K  +   +  +      Q QA++ +   ++  +V   Q+      ++  A  A
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNA 204

Query: 253 ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV 302
           ++++     +   +  ER   ++ +C+     D ++       L  I+  
Sbjct: 205 LADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 35/140 (25%)

Query: 26  LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS 85
           +A  +  +R     AL  +            G+ A  PLL  L+N +       A     
Sbjct: 1   MADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWRIRGAAAWII-- 46

Query: 86  NLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGV 145
                       Q    +  L +L+  +   V S A   L  +                V
Sbjct: 47  ---------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERV 85

Query: 146 CPRLVKLLGHPSQSVLTQAL 165
              + KL    +      A+
Sbjct: 86  RAAMEKLAETGTGFARKVAV 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.6
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.52
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.42
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.34
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.17
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.08
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.07
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.04
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.98
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.96
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.92
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.87
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.68
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.58
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.56
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.51
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.44
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.37
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.18
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.94
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.89
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.24
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.36
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.88
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.43
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.51
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	89.43
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	88.26
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	88.05
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.07
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	86.58
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	85.3
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	81.68

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-41  Score=316.09  Aligned_cols=355  Identities=52%  Similarity=0.775  Sum_probs=323.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+++++++....+.+.|+++.++.+|.+++++++..|+|+|+|++.++++.+..+.+.|+++.|+.++ .+.+..+++.+
T Consensus       146 ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~  224 (503)
T d1wa5b_         146 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTA  224 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999 67788999999


Q ss_pred             HHHHHhhcCCC-CCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChh
Q 037142           81 TWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS  159 (383)
Q Consensus        81 ~~~L~~l~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~  159 (383)
                      +|++.+++... +........+++|.+..++.+++++++..++|++.+++.. ..+....+.+.|+++.++.++.++++.
T Consensus       225 ~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~  303 (503)
T d1wa5b_         225 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTL  303 (503)
T ss_dssp             HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC-CchhhhhhhhhhhhhhhhhcccCCchh
Confidence            99999999876 4556667789999999999999999999999999999988 677788899999999999999999999


Q ss_pred             hHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh
Q 037142          160 VLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ  239 (383)
Q Consensus       160 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~  239 (383)
                      +...++.++++++.+.+.....+.+.|+++.+..++.++ ++.++..++|+++|++.+++.....+++.++++.++.++.
T Consensus       304 v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~  382 (503)
T d1wa5b_         304 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE  382 (503)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcc
Confidence            999999999999998888888888999999999999998 9999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhcCCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCccc
Q 037142          240 NAVFYIKKEAAWAISNATFGG--THEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVN  317 (383)
Q Consensus       240 ~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~  317 (383)
                      +++.+++.+|+|+|+|++..+  .++.+..+++.|+++.|+++++..++++...++.+|.+++..+...+...  ....+
T Consensus       383 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~--~~~~~  460 (503)
T d1wa5b_         383 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNIN  460 (503)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSC
T ss_pred             cCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh--cccch
Confidence            999999999999999998653  35678889999999999999999999999999999999998765432210  12357


Q ss_pred             HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          318 QYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       318 ~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      .+...++++|+++.|+.|++|++++|+++|..+|+.||+++++
T Consensus       461 ~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         461 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            7899999999999999999999999999999999999998874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-39  Score=292.47  Aligned_cols=347  Identities=47%  Similarity=0.743  Sum_probs=315.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCC----ChhH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHE----NLSM   76 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~----~~~~   76 (383)
                      |+|+++++.+..+++.|+++.|+++|.++++++++.|+++|++++.++++.+..+.+.|+++.++.++....    ....
T Consensus        83 ~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~  162 (434)
T d1q1sc_          83 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY  162 (434)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHH
T ss_pred             HHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHH
Confidence            467888999999999999999999999999999999999999999999999999999999999999995332    2345


Q ss_pred             HHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC
Q 037142           77 KRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH  155 (383)
Q Consensus        77 ~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~  155 (383)
                      ...+++++.+++...+ ........++++.+..++.+++++++..+++++.+++.. +......+...|+++.++.++.+
T Consensus       163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~  241 (434)
T d1q1sc_         163 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGA  241 (434)
T ss_dssp             HHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh-hhhhHHHHhhcccchhccccccc
Confidence            6778899999998763 344556688999999999999999999999999999988 66777778888999999999999


Q ss_pred             CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHH
Q 037142          156 PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV  235 (383)
Q Consensus       156 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~  235 (383)
                      +++.++..++.+|++++.+++.....+++.|+++.+..+++++ ++.++..+++++++++..++.....+.+.|+++.++
T Consensus       242 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li  320 (434)
T d1q1sc_         242 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  320 (434)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHH
Confidence            9999999999999999988887777888999999999999998 999999999999999999888888899999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCc
Q 037142          236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGD  315 (383)
Q Consensus       236 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  315 (383)
                      .++.+++++++..|+|+++|++...+.+....+.+.|+++.|++++++++++++..++++|.+++..++...       .
T Consensus       321 ~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~  393 (434)
T d1q1sc_         321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------E  393 (434)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------C
T ss_pred             HHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------C
Confidence            999999999999999999999988788889999999999999999999999999999999999998776442       3


Q ss_pred             ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          316 VNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       316 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      .+.+...+++.|+++.|+.|++|++++|++.|.++|++||.
T Consensus       394 ~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999999999999984

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-35  Score=269.85  Aligned_cols=336  Identities=25%  Similarity=0.343  Sum_probs=299.7

Q ss_pred             hHHHHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHH
Q 037142            7 LEDKKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLS   85 (383)
Q Consensus         7 ~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~   85 (383)
                      ......+++.|++|.|++++.. .+++++..|+|+|++++..++.....+.+.|+++.++.+| .+++.+++..++|+|+
T Consensus       109 ~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL-~s~~~~i~~~a~~~L~  187 (503)
T d1wa5b_         109 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALG  187 (503)
T ss_dssp             SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHH
T ss_pred             CchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHh-cCCChhHHHHHHHHHH
Confidence            3446788999999999999985 6788999999999999998889999999999999999999 6788999999999999


Q ss_pred             hhcCCCCC-CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHH
Q 037142           86 NLCGGKPR-PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA  164 (383)
Q Consensus        86 ~l~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a  164 (383)
                      |++.+.+. +......|+++.++.++.+.+++++..++|++.+++.+ ...........++++.++.++.+++++++..+
T Consensus       188 nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~-~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~  266 (503)
T d1wa5b_         188 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETLVDA  266 (503)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC-SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred             HHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            99987633 34455689999999999999999999999999999987 44444444456789999999999999999999


Q ss_pred             HHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchh
Q 037142          165 LHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFY  244 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  244 (383)
                      +++|.+++...++....+.+.|+++.++.++.++ ++.++..++.+++|++.+++.....+++.|+++.+..++.++++.
T Consensus       267 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~  345 (503)
T d1wa5b_         267 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN  345 (503)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred             HHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC-chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHH
Confidence            9999999988887777889999999999999999 999999999999999999988888888999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHH
Q 037142          245 IKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVE  324 (383)
Q Consensus       245 v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  324 (383)
                      ++++++|+++|++.. ++.....+.+.|+++.++.++.+.+++++..++|+|.+++..+...+          .....+.
T Consensus       346 i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~----------~~~~~l~  414 (503)
T d1wa5b_         346 IKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP----------DIIRYLV  414 (503)
T ss_dssp             HHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCT----------HHHHHHH
T ss_pred             HHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccH----------HHHHHHH
Confidence            999999999999886 57888898999999999999999999999999999999998655432          3456677


Q ss_pred             HhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 037142          325 EAKGLEKIENLQRHDNYEIHEKSAKILETYWC  356 (383)
Q Consensus       325 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  356 (383)
                      +.|+++.|.+++.+.+.++...++.+|.+++.
T Consensus       415 ~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         415 SQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-33  Score=253.05  Aligned_cols=332  Identities=26%  Similarity=0.364  Sum_probs=291.1

Q ss_pred             HHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037142           10 KKAVVDHGAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLC   88 (383)
Q Consensus        10 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~   88 (383)
                      +..+++.|++|.|+++|++ +++++|..|+++|.+++..+++.+..+.+.|+++.++++| ++++.++++.++++|+|++
T Consensus        49 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L-~~~~~~~~~~a~~~L~nl~  127 (434)
T d1q1sc_          49 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIA  127 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcc-ccCCHHHHHHHHHHHHHHh
Confidence            5678999999999999976 5688999999999999998889999999999999999999 6888999999999999999


Q ss_pred             CCCCCC-ChhhhhchhHHHHHhhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHH
Q 037142           89 GGKPRP-IFDQVRPCLPTLAQLVHSND-----EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT  162 (383)
Q Consensus        89 ~~~~~~-~~~~~~~~i~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~  162 (383)
                      .+.+.. ......++++.++.++...+     ......+++++.+++.. ...........++++.+..++.+++++++.
T Consensus       128 ~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~  206 (434)
T d1q1sc_         128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN-KNPAPPLDAVEQILPTLVRLLHHNDPEVLA  206 (434)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCC-CTTCCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             ccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhc-ccccchhhhhhhHHHHHHHHHhccccchhh
Confidence            876433 33445789999999998554     35667889999999987 443334444456889999999999999999


Q ss_pred             HHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCc
Q 037142          163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAV  242 (383)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~  242 (383)
                      .+++++++++.+++.....+.+.|+++.++.++.++ ++.++..+++++++++.+++.....+++.|+++.+..++.+++
T Consensus       207 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  285 (434)
T d1q1sc_         207 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK  285 (434)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS
T ss_pred             hHHhhhcccchhhhhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc
Confidence            999999999988777777778889999999999999 9999999999999999999888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHH
Q 037142          243 FYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQL  322 (383)
Q Consensus       243 ~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  322 (383)
                      ++++..|++++++++.. +.+....+.+.|+++.+++++.+++++++..+++++.+++...+..            ....
T Consensus       286 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~------------~~~~  352 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAG-RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE------------QIVY  352 (434)
T ss_dssp             HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH------------HHHH
T ss_pred             hhhhHHHHHHHhhhccc-cchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHH------------HHHH
Confidence            99999999999999986 5678888889999999999999999999999999999999865433            3455


Q ss_pred             HHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          323 VEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       323 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      +.+.|+++.|.++++++++++...+..++.+++..
T Consensus       353 l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         353 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999988877653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.5e-29  Score=231.18  Aligned_cols=370  Identities=20%  Similarity=0.176  Sum_probs=302.0

Q ss_pred             CCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHH
Q 037142            4 SKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWT   83 (383)
Q Consensus         4 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~   83 (383)
                      +.+++.+..+++.|+++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+.+| ++++.+++..++++
T Consensus        88 ~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~  166 (529)
T d1jdha_          88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDC  166 (529)
T ss_dssp             TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHH
T ss_pred             hCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHH
Confidence            35788999999999999999999999999999999999999988888899999999999999999 67889999999999


Q ss_pred             HHhhcCCCC-CCChhhhhchhHHHHHhhccC-CHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhH
Q 037142           84 LSNLCGGKP-RPIFDQVRPCLPTLAQLVHSN-DEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL  161 (383)
Q Consensus        84 L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~  161 (383)
                      +.+++..++ ........++++.+..++... +..++..+++++.+++..  .+....+.+.|+++.++.++.+++.+++
T Consensus       167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T d1jdha_         167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc--ccccchhhhhhhhhhHHHHhcccchhhh
Confidence            999998763 334445588999999999754 578999999999999976  5677788899999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc-
Q 037142          162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN-  240 (383)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-  240 (383)
                      ..+++++.+++.....   .....|+++.++.++.++ ++.++..++++|++++.+++..+..+.+.++++.++..+.. 
T Consensus       245 ~~a~~~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~  320 (529)
T d1jdha_         245 QNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hhhhhHHHhccccccc---hhhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhh
Confidence            9999999999854432   233458899999999998 99999999999999999998888888899999999998853 


Q ss_pred             -CchhHHHHHHHHHHHhcCCCC-HH-HHHHHHHcCChHHHHhhcCCCC-HHHHHHHHHHHHHHHHhchhcccCcCCCCc-
Q 037142          241 -AVFYIKKEAAWAISNATFGGT-HE-QIKYLEREGCIKPLCDLLLCPD-PQIVTVCLKALENILKVGEAEKNTDTDIGD-  315 (383)
Q Consensus       241 -~~~~v~~~a~~~l~~l~~~~~-~~-~~~~l~~~~~i~~L~~ll~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~-  315 (383)
                       +.+.++..|++++.+++.... .+ ....+...++++.|++++..++ ..++..+++++.++........ ...+.++ 
T Consensus       321 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~-~l~~~g~i  399 (529)
T d1jdha_         321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA-PLREQGAI  399 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH-HHHHTTHH
T ss_pred             hcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhh-hhhhcccH
Confidence             567899999999999997642 23 3445557899999999998754 4677778888877765332111 0000000 


Q ss_pred             -------------------------------------------------ccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          316 -------------------------------------------------VNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       316 -------------------------------------------------~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                                                                       .+..+..+.+.|+++.|.+++.+++++++..
T Consensus       400 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~  479 (529)
T d1jdha_         400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV  479 (529)
T ss_dssp             HHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHH
Confidence                                                             1122345667889999999999999999999


Q ss_pred             HHHHHHHhcCCCC----------CCCCcccccccccccchhhhcc
Q 037142          347 SAKILETYWCGRV----------VGPQPGLLYAGNEENEEEDALG  381 (383)
Q Consensus       347 a~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  381 (383)
                      +..+|..+..+++          -.++..++.++|+..+..++.+
T Consensus       480 a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~a  524 (529)
T d1jdha_         480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV  524 (529)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999988876554          2567888888998888877654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-28  Score=227.36  Aligned_cols=326  Identities=18%  Similarity=0.198  Sum_probs=275.5

Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHh-cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC
Q 037142           14 VDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLG-EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        14 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      ...+.+|.|+++|++.+..++..|+.++.+++..+ ..+..+.. .|+++.++++|.+..+.++++.++++|.+++.+.+
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence            33588999999999999999999999999999765 44555544 47799999999766788999999999999998765


Q ss_pred             CCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhh
Q 037142           93 RPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIA  172 (383)
Q Consensus        93 ~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~  172 (383)
                      .+......|++|.|++++++++++++..++++|.+++.+ .......+.+.|+++.|+.+|+++++.++..+++++.+++
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc-cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            555666689999999999999999999999999999987 5566677888999999999999999999999999999999


Q ss_pred             cCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHH
Q 037142          173 RGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWA  252 (383)
Q Consensus       173 ~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  252 (383)
                      ..++.....+...|+++.++.++.+...+.++..+++++.+++.. ++....+++.|+++.|..++.+++.+++..++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~  250 (529)
T d1jdha_         172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  250 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhH
Confidence            887777777888999999999997764678999999999999764 4777888899999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHH
Q 037142          253 ISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKI  332 (383)
Q Consensus       253 l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L  332 (383)
                      +.+++.....    .....|+++.|++++.+++++++..++++|.+++....             .....+.+.|+++.+
T Consensus       251 l~~ls~~~~~----~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~-------------~~~~~i~~~~~i~~L  313 (529)
T d1jdha_         251 LRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-------------KNKMMVCQVGGIEAL  313 (529)
T ss_dssp             HHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH-------------HHHHHHHHTTHHHHH
T ss_pred             HHhccccccc----hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchh-------------HHHHHHHHhhhHHHH
Confidence            9999765321    11123678999999999999999999999999985433             345567889999999


Q ss_pred             HHHh--cCCCHHHHHHHHHHHHHhcCCCC
Q 037142          333 ENLQ--RHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       333 ~~l~--~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ..++  .++.+++.+.|..++.++.....
T Consensus       314 i~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         314 VRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            8775  45778899999999988876544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-25  Score=199.22  Aligned_cols=343  Identities=17%  Similarity=0.166  Sum_probs=255.9

Q ss_pred             CccCCChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHH
Q 037142            1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA   80 (383)
Q Consensus         1 n~~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a   80 (383)
                      |+|.++++++..+.+.|++|.|+++|+++++++|..|+++|.+++.++++.+..+.+.|+++.+++++.++.+..++..+
T Consensus        28 ~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a  107 (457)
T d1xm9a1          28 HTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL  107 (457)
T ss_dssp             HHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHH
Confidence            57888999999999999999999999999999999999999999998899999999999999999999777789999999


Q ss_pred             HHHHHhhcCCCCCCChhhhhchhHHHHHhh----------------ccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhC
Q 037142           81 TWTLSNLCGGKPRPIFDQVRPCLPTLAQLV----------------HSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAG  144 (383)
Q Consensus        81 ~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  144 (383)
                      ++++.+++........ ....+++.+...+                ...+..++..+++++..++.. +..........|
T Consensus       108 ~~~l~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~  185 (457)
T d1xm9a1         108 TGLLWNLSSTDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSG  185 (457)
T ss_dssp             HHHHHHHHTSSSTHHH-HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTT
T ss_pred             HHHHHHHHhhhhhHHH-HHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcC-chHHHHHHHHhc
Confidence            9999999987543332 3334444444333                245689999999999999987 333333344457


Q ss_pred             cHHHHHHhcCCC------ChhhHHHHHHHHhhh-----------------------------------------------
Q 037142          145 VCPRLVKLLGHP------SQSVLTQALHTVGNI-----------------------------------------------  171 (383)
Q Consensus       145 ~i~~l~~~L~~~------~~~v~~~a~~~L~~l-----------------------------------------------  171 (383)
                      +++.++.++.+.      .......+...+...                                               
T Consensus       186 ~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (457)
T d1xm9a1         186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCP  265 (457)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------
T ss_pred             cHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhh
Confidence            788888877531      111111111111110                                               


Q ss_pred             ---hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH-----HHHHHHhcCChHHHHHHhhcCch
Q 037142          172 ---ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE-----QIQAVIDAGLIGPLVNLLQNAVF  243 (383)
Q Consensus       172 ---~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~-----~~~~~~~~~~l~~L~~ll~~~~~  243 (383)
                         ..........+...++++.+..++....++.++..+.+++.+++.....     ....+.+.++++.|+.++.++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~  345 (457)
T d1xm9a1         266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS  345 (457)
T ss_dssp             CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH
T ss_pred             hHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccH
Confidence               0111112222334456777888776664788899999999999865421     23334478999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC------CHHHHHHHHHHHHHHHHhchhcccCcCCCCccc
Q 037142          244 YIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP------DPQIVTVCLKALENILKVGEAEKNTDTDIGDVN  317 (383)
Q Consensus       244 ~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~  317 (383)
                      .++..+++++++++..  ++....+ ..++++.+++++...      +++++..++.+|.+++....             
T Consensus       346 ~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-------------  409 (457)
T d1xm9a1         346 DVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP-------------  409 (457)
T ss_dssp             HHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT-------------
T ss_pred             HHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCH-------------
Confidence            9999999999999976  3444444 446899999988632      35789999999999986433             


Q ss_pred             HHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCCCCC
Q 037142          318 QYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKILETYWCGRVVG  361 (383)
Q Consensus       318 ~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~~  361 (383)
                      ..++.+.+.|+++.|.+++.+ +++.+++.|..+|.+++.+.+-+
T Consensus       410 ~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            356678899999999999766 56789999999999999876654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-22  Score=182.35  Aligned_cols=324  Identities=13%  Similarity=0.118  Sum_probs=232.1

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCC-CCC
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKP-RPI   95 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~-~~~   95 (383)
                      +.||.|+++|++++++++..|+++|++++.++++.++.+.+.|+++.|+++| ++++++++..|+++|.+++.+++ .+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4689999999999999999999999999998889999999999999999999 78899999999999999997653 334


Q ss_pred             hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc----------------CCCCh
Q 037142           96 FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL----------------GHPSQ  158 (383)
Q Consensus        96 ~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L----------------~~~~~  158 (383)
                      .....|+++.+++++. ..+++++..+++++.+++.. .. ........++ +.++..+                ...+.
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~-~~-~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHH-HHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh-hh-hHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            4455889999999886 46789999999999999987 33 3333333333 3333332                33678


Q ss_pred             hhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhcccc-----chhHHHHHHHHHHHH---------------hc--
Q 037142          159 SVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNH-----KTSIKNYACWIISNI---------------TA--  216 (383)
Q Consensus       159 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~-----~~~~~~~a~~~l~nl---------------~~--  216 (383)
                      .++..+++++..++..++.........|+++.++.++.+..     .......+...+.+.               ..  
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            89999999999998777665555566788899888875320     111111111111110               00  


Q ss_pred             ---------------------------------CCHHHHHHHHhcCChHHHHHHhhc-CchhHHHHHHHHHHHhcCCCCH
Q 037142          217 ---------------------------------GNREQIQAVIDAGLIGPLVNLLQN-AVFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       217 ---------------------------------~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~  262 (383)
                                                       ........+...++++.+..++.+ .++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                             000011111223346667777754 4778899999999999876421


Q ss_pred             ---H-HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          263 ---E-QIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       263 ---~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                         . ....+.+.++++.|++++.+++++++..+++++.++......              ...+.+ ++++.+..++..
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~--------------~~~i~~-~~i~~li~~L~~  382 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--------------HRVMGN-QVFPEVTRLLTS  382 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--------------HHHHHH-HTHHHHHHTTTS
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH--------------HHHHHH-hhHHHHHHHHhc
Confidence               1 233444679999999999999999999999999999864332              333443 567777777643


Q ss_pred             ------CCHHHHHHHHHHHHHhcCCCC
Q 037142          339 ------DNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       339 ------~~~~v~~~a~~~l~~~~~~~~  359 (383)
                            .++++...|..++.++.....
T Consensus       383 ~~~~~~~~~~v~~~a~~~L~~l~~~~~  409 (457)
T d1xm9a1         383 HTGNTSNSEDILSSACYTVRNLMASQP  409 (457)
T ss_dssp             CCSCSTTHHHHHHHHHHHHHHHHTTCT
T ss_pred             cccCcCCcHHHHHHHHHHHHHHhcCCH
Confidence                  335688899999988876543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-20  Score=156.85  Aligned_cols=209  Identities=9%  Similarity=0.061  Sum_probs=178.9

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPI   95 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (383)
                      ....|.......+.+.+.+..|+.+|.+++. +.+.+..+...|+++.++..+.++++++++..|+++|++++.+++...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~   94 (264)
T d1xqra1          16 QPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ   94 (264)
T ss_dssp             SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccCcchHHHhhcCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444567889999999999995 457788888999999998755478899999999999999999875443


Q ss_pred             -hhhhhchhHHHHHhhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           96 -FDQVRPCLPTLAQLVH-SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        96 -~~~~~~~i~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                       .....+++|.+++++. +.+++++..+++++.+++.+ .++....+...|+++.++.++.++++.++..++++|++++.
T Consensus        95 ~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~  173 (264)
T d1xqra1          95 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  173 (264)
T ss_dssp             HHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence             3445899999999997 56789999999999999998 77788888999999999999999999999999999999998


Q ss_pred             CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVID  227 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~  227 (383)
                      .++.....+.+.|+++.++.++.++ ++.++..++++|.+++..++........
T Consensus       174 ~~~~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         174 GHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             ccHHHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8888888899999999999999998 9999999999999999988887777664

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.4e-20  Score=153.89  Aligned_cols=190  Identities=19%  Similarity=0.180  Sum_probs=171.3

Q ss_pred             cCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHH-hcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHH
Q 037142          112 SNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVK-LLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPY  190 (383)
Q Consensus       112 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~  190 (383)
                      ..+.+.+..++.+|.+++..  .++...+...|+++.++. ++.+++++++..++++|++++.+++.....+.+.|+++.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~--~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            44578899999999999976  677888889999998875 788899999999999999999988877777889999999


Q ss_pred             HHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       191 l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                      ++.++.+..++.++..+++++++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. ++.....+.+
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence            999997654888999999999999999989898999999999999999999999999999999999876 4577788889


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       271 ~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      .|+++.|+.++++++++++..++++|.+++...+
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999999987544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.7e-15  Score=137.78  Aligned_cols=305  Identities=12%  Similarity=0.102  Sum_probs=226.0

Q ss_pred             CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           16 HGAVPIFVKLLASPSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        16 ~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      ..+++.+..++++++++++..|+..++.++..- ........-..+++.+...+ ++.+..++..++.++..++...  .
T Consensus       280 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~  356 (588)
T d1b3ua_         280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL--G  356 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--C
T ss_pred             hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--c
Confidence            356888888999999999999999998887531 22222222345577778887 6788999999988888776421  1


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .......++|.+..++.+++++++..++.++..+... -  ....+.+ .+++.+...+.++++.++..++.++..++..
T Consensus       357 ~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~-~--~~~~~~~-~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~  432 (588)
T d1b3ua_         357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV-I--GIRQLSQ-SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH-S--CHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh-c--chhhhhh-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            1233466889999999999999999999888877753 1  1122222 3788999999999999999999999998753


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      ...   ......+.+.+..++.++ ...+|..|+++++.++.....   ......+++.+..++.++++..|..++.++.
T Consensus       433 ~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~  505 (588)
T d1b3ua_         433 LGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCIN  505 (588)
T ss_dssp             HCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred             cCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            221   123334667788888888 899999999999999753211   1223457888999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      .+....+.    ......+++.+.++++++.+.||..++++|..+....+..           .+     .....+.+..
T Consensus       506 ~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~-----------~~-----~~~i~~~l~~  565 (588)
T d1b3ua_         506 VLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------TL-----QSEVKPILEK  565 (588)
T ss_dssp             HHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------HH-----HHHHHHHHHH
T ss_pred             HHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH-----------hH-----HHHHHHHHHH
Confidence            88753221    2233458999999999999999999999999987654321           11     2234578889


Q ss_pred             HhcCCCHHHHHHHHHHHHHh
Q 037142          335 LQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~  354 (383)
                      ++++++.+|+..|.+++..+
T Consensus       566 L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         566 LTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HTTCSSHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.5e-15  Score=137.41  Aligned_cols=308  Identities=12%  Similarity=0.052  Sum_probs=225.8

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC--
Q 037142           17 GAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP--   94 (383)
Q Consensus        17 g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~--   94 (383)
                      .+++.+.+++.++++.+|..++.+|+.++..   .........+++.+..++ ++++.+++..++..+..++..-...  
T Consensus       242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~~~~~  317 (588)
T d1b3ua_         242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            3677888888888888888888888887742   111222345678888888 6788999999999999988765322  


Q ss_pred             ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcC
Q 037142           95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG  174 (383)
Q Consensus        95 ~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~  174 (383)
                      .......++|.+...+.+.++.++..++.++..++..  - ......+ .++|.+...+++++++++..++..+..+...
T Consensus       318 ~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~--~-~~~~~~~-~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~  393 (588)
T d1b3ua_         318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI--L-GKDNTIE-HLLPLFLAQLKDECPEVRLNIISNLDCVNEV  393 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH--H-CHHHHHH-HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc--c-chhHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence            2233477899999999999999999999888877643  1 1112222 3789999999999999999998888777643


Q ss_pred             CCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHH
Q 037142          175 DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS  254 (383)
Q Consensus       175 ~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~  254 (383)
                      ...  . -....+++.+..++.+. ++.+|..++..++.++..-   ....+...+.+.+..++.++...+|..|+.+++
T Consensus       394 ~~~--~-~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~  466 (588)
T d1b3ua_         394 IGI--R-QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQL---GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK  466 (588)
T ss_dssp             SCH--H-HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH---CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             cch--h-hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHc---ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence            221  1 11224677788888888 9999999999999886421   011122335667777788889999999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHH
Q 037142          255 NATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIEN  334 (383)
Q Consensus       255 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~  334 (383)
                      .++...+.+..    ...+++.+.+++.+++...|..++.++..+....+..                ......++.+.+
T Consensus       467 ~l~~~~~~~~~----~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~ilp~ll~  526 (588)
T d1b3ua_         467 KLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLR  526 (588)
T ss_dssp             HHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHH
T ss_pred             HHHHHhCcHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHHHHHHH
Confidence            99865433322    2347899999999999999999999999888754432                123346788999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCCC
Q 037142          335 LQRHDNYEIHEKSAKILETYWCGRV  359 (383)
Q Consensus       335 l~~~~~~~v~~~a~~~l~~~~~~~~  359 (383)
                      ++.++.++|+..+.+++..++..-+
T Consensus       527 ~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         527 MAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999988876544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=9.8e-11  Score=97.82  Aligned_cols=256  Identities=16%  Similarity=0.152  Sum_probs=189.3

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           15 DHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        15 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      +....+.|.++|+++++.+|..|+.+|+.+..  +         ..++.+++++ +++++.++..|+.+|+.+...... 
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l-~d~~~~vr~~a~~aL~~l~~~~~~-   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKKC-   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTTT-
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccccc-
Confidence            34567789999999999999999999998763  1         2378899999 788999999999999998654211 


Q ss_pred             ChhhhhchhHHHH-HhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhc
Q 037142           95 IFDQVRPCLPTLA-QLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIAR  173 (383)
Q Consensus        95 ~~~~~~~~i~~l~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~  173 (383)
                          .....+.+. .+++++++.++..++.++..++.. ......     ..++.+...+.++++.++..++.+++... 
T Consensus        84 ----~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-  152 (276)
T d1oyza_          84 ----EDNVFNILNNMALNDKSACVRATAIESTAQRCKK-NPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN-  152 (276)
T ss_dssp             ----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccc-cchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcc-
Confidence                122333333 455688999999999999999865 332222     25678888889999999999988887653 


Q ss_pred             CCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHH
Q 037142          174 GDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       174 ~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                                +...++.+..++... +..++..+..++.........         ..+.+...+.+.+..++..+.+++
T Consensus       153 ----------~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al  212 (276)
T d1oyza_         153 ----------DKATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL  212 (276)
T ss_dssp             ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhcccc
Confidence                      224577888888888 888999999888888766643         234466677888999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHH
Q 037142          254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIE  333 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~  333 (383)
                      ..+..            ...++.|++.+.+  +.++..++++|..+-                        +.+.++.|.
T Consensus       213 ~~~~~------------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig------------------------~~~~~~~L~  254 (276)
T d1oyza_         213 SYRKD------------KRVLSVLCDELKK--NTVYDDIIEAAGELG------------------------DKTLLPVLD  254 (276)
T ss_dssp             HHTTC------------GGGHHHHHHHHTS--SSCCHHHHHHHHHHC------------------------CGGGHHHHH
T ss_pred             chhhh------------hhhHHHHHHHhCC--hHHHHHHHHHHHHcC------------------------CHHHHHHHH
Confidence            87642            2357778887764  457888888887652                        123456676


Q ss_pred             HHhcC-CCHHHHHHHHHHHH
Q 037142          334 NLQRH-DNYEIHEKSAKILE  352 (383)
Q Consensus       334 ~l~~~-~~~~v~~~a~~~l~  352 (383)
                      .++.. ++.+|+..|.+.|.
T Consensus       255 ~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         255 TMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHccCCCHHHHHHHHHHHc
Confidence            65554 57789999888775

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.2e-12  Score=123.09  Aligned_cols=316  Identities=15%  Similarity=0.178  Sum_probs=196.1

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCC-CCCChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~   97 (383)
                      ++.+.+.+.++++..|+.|+.+|+.++....+.....+ ..+++.++..+ +++++.+|..++|+|+.++... +.....
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHT-TSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            34455666778999999999999999976544332222 23467788888 7889999999999999998644 222333


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCc
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYS  177 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~  177 (383)
                      ....+++.++..+.+.++.++..+++++.+++.. ..+......+ .+++.++..+...+...+..+..+++.++.....
T Consensus       475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~-~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEE-ACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH-HTTSSGGGHH-HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hhhhhhhHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            4577899999999999999999999999999865 2222222222 2567777777776666666666666555421110


Q ss_pred             c------ccce-------------------------------ecCCChH-------HHHHhhc----------------c
Q 037142          178 Q------TLYI-------------------------------INCGALP-------YLLGLLI----------------D  197 (383)
Q Consensus       178 ~------~~~l-------------------------------~~~~~i~-------~l~~ll~----------------~  197 (383)
                      .      ...+                               ...++.+       .++..+.                .
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            0      0000                               0001111       0011100                0


Q ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 037142          198 NHKTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKP  276 (383)
Q Consensus       198 ~~~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~  276 (383)
                      ..+..+...++.+++.++..-......++ ...+++.+...+.+.++.+|..|..+++.++.........++-  .+++.
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~  710 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPI  710 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHH
Confidence            00223333444444444432111122222 3456777888888899999999999999887654333223322  26788


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCC--HHHHHHHHHHHHHh
Q 037142          277 LCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDN--YEIHEKSAKILETY  354 (383)
Q Consensus       277 L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~--~~v~~~a~~~l~~~  354 (383)
                      +...++++.+.++..++|++..++...+..-.         ++...     .++.|..++++++  ..+.+.+..++-++
T Consensus       711 l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~---------py~~~-----il~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         711 LGTNLNPEFISVCNNATWAIGEISIQMGIEMQ---------PYIPM-----VLHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG---------GGSHH-----HHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh---------hhHHH-----HHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            88888888889999999999999887654321         12222     2466777776644  34777777666554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8e-11  Score=115.08  Aligned_cols=277  Identities=16%  Similarity=0.198  Sum_probs=176.5

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESP-RFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      +++.++..++++++.+|..|+|+|+.++.... ...+.. -..+++.++..+ .++++.++..|+++|.+++......-.
T Consensus       437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            56778888999999999999999998874111 111111 245677888888 677899999999999999875533333


Q ss_pred             hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCC-----CchHHHHHHHhCcHHHHHHhcC-----------------
Q 037142           97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGG-----KNDEIQAVIEAGVCPRLVKLLG-----------------  154 (383)
Q Consensus        97 ~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~~~~~~i~~l~~~L~-----------------  154 (383)
                      .....+++.+...+...+...+..+..++..++...     .+.....     +++.+.....                 
T Consensus       515 p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~-----l~~~l~~~~~~~~~~~~~~~~~le~l~  589 (888)
T d1qbkb_         515 PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM-----LMPPLIQKWNMLKDEDKDLFPLLECLS  589 (888)
T ss_dssp             GGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHH-----HHHHHHHHHTTSCTTCTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            445778888888888766665555555555544210     0111111     1111111111                 


Q ss_pred             -------------------------------------------CCChhhHHHHHHHHhhhhcCCCccccce-ecCCChHH
Q 037142          155 -------------------------------------------HPSQSVLTQALHTVGNIARGDYSQTLYI-INCGALPY  190 (383)
Q Consensus       155 -------------------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~~~i~~  190 (383)
                                                                 ..+......++.++..++..-......+ ....+++.
T Consensus       590 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~  669 (888)
T d1qbkb_         590 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL  669 (888)
T ss_dssp             HHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHH
T ss_pred             HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHH
Confidence                                                       1233444445555555543222222222 23356677


Q ss_pred             HHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          191 LLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       191 l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                      +...+.+. ++.++..+..+++.++...+......+ ..+++.+...+.++...++..|+|+++.++...+.+...++- 
T Consensus       670 l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-  746 (888)
T d1qbkb_         670 MYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-  746 (888)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-
T ss_pred             HHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-
Confidence            77888887 899999999999998865433332222 235667777777788899999999999998664433333322 


Q ss_pred             cCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhchh
Q 037142          271 EGCIKPLCDLLLCP--DPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       271 ~~~i~~L~~ll~~~--~~~v~~~al~~l~~l~~~~~~  305 (383)
                       .+++.|+..++++  +..++.+++.+++.+...++.
T Consensus       747 -~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         747 -MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             -HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence             3788888888765  346889999999999887654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.4e-10  Score=102.33  Aligned_cols=282  Identities=12%  Similarity=0.072  Sum_probs=182.3

Q ss_pred             CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCCC
Q 037142           17 GAVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN-HENLSMKRIATWTLSNLCGGKPR   93 (383)
Q Consensus        17 g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~~~~~~a~~~L~~l~~~~~~   93 (383)
                      +.++.+.+.+.+  .++..+..++.++..++.........-....+++.++..+.+ +.+..++..++.++.++....+.
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            467778887765  556778888888888774221111000012235677777743 34678999999999999875421


Q ss_pred             --CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142           94 --PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus        94 --~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                        ..........+.+...+.+++++++..++.++..++.. ..............+.+...+.+++++++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence              12233355777888888899999999999999999876 333332222222344556667788889999999888877


Q ss_pred             hcCCCcc------------ccceecC--------CChHHHHHhhcc------ccchhHHHHHHHHHHHHhcCCH-HHHHH
Q 037142          172 ARGDYSQ------------TLYIINC--------GALPYLLGLLID------NHKTSIKNYACWIISNITAGNR-EQIQA  224 (383)
Q Consensus       172 ~~~~~~~------------~~~l~~~--------~~i~~l~~ll~~------~~~~~~~~~a~~~l~nl~~~~~-~~~~~  224 (383)
                      +......            .......        .+.+.+...+..      ..+..++..+..++..++...+ .... 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-  364 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-  364 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-
Confidence            6321100            0000111        112233333321      1134578888888888775322 2221 


Q ss_pred             HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                          .+++.+.+.++++++.+|..|+.+|+.++........... -..+++.++..++++++.||..|+++|.+++....
T Consensus       365 ----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         365 ----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence                2466777788889999999999999999876432322221 13578999999999999999999999999987654


Q ss_pred             h
Q 037142          305 A  305 (383)
Q Consensus       305 ~  305 (383)
                      .
T Consensus       440 ~  440 (458)
T d1ibrb_         440 E  440 (458)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.9e-09  Score=89.71  Aligned_cols=227  Identities=13%  Similarity=0.075  Sum_probs=164.0

Q ss_pred             cCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH
Q 037142           58 EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI  137 (383)
Q Consensus        58 ~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  137 (383)
                      ....+.|+++| +++++.++..|+.+|+.+..          ...++.+.++++++++.++..++.+|..+... . ...
T Consensus        18 ~~~~~~L~~~L-~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~-~~~   84 (276)
T d1oyza_          18 KLNDDELFRLL-DDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K-KCE   84 (276)
T ss_dssp             TSCHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T-TTH
T ss_pred             cCCHHHHHHHh-cCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c-ccc
Confidence            44567899999 78999999999999998753          34789999999999999999999999998754 2 221


Q ss_pred             HHHHHhCcHHH-HHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhc
Q 037142          138 QAVIEAGVCPR-LVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITA  216 (383)
Q Consensus       138 ~~~~~~~~i~~-l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~  216 (383)
                      ...     .+. +..+++++++.++..++.+|+.++.......     ...++.+...+.+. ++.++..++.+++.+. 
T Consensus        85 ~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~-  152 (276)
T d1oyza_          85 DNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDK-STNVRRATAFAISVIN-  152 (276)
T ss_dssp             HHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--
T ss_pred             cch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHhcCc-chHHHHHHHHHHhhcc-
Confidence            221     222 3345678999999999999999986544221     24567777777777 8899998888877653 


Q ss_pred             CCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142          217 GNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL  296 (383)
Q Consensus       217 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l  296 (383)
                                +...++.+..++.+.+..++..+..++....... ..         ..+.+...+.+.+..++..+..++
T Consensus       153 ----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~al  212 (276)
T d1oyza_         153 ----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN-SD---------IRDCFVEMLQDKNEEVRIEAIIGL  212 (276)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-HH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccc-cc---------cchhhhhhhhhhhhhhhhhhcccc
Confidence                      2456778888898889999999999988876652 22         244566777888999998888887


Q ss_pred             HHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142          297 ENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      ..+-                        ....++.|.+.+.+  ++++..+..+|..+-
T Consensus       213 ~~~~------------------------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig  245 (276)
T d1oyza_         213 SYRK------------------------DKRVLSVLCDELKK--NTVYDDIIEAAGELG  245 (276)
T ss_dssp             HHTT------------------------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHC
T ss_pred             chhh------------------------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcC
Confidence            6432                        11223444444443  347777888887653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.7e-09  Score=92.28  Aligned_cols=278  Identities=12%  Similarity=0.059  Sum_probs=181.8

Q ss_pred             CChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCC-CCChhhhhchhHHHHHhhccC--CHHHHHHHHHHHHHhccCCCc
Q 037142           59 AALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKP-RPIFDQVRPCLPTLAQLVHSN--DEHVMSNACWGLSLLCDGGKN  134 (383)
Q Consensus        59 g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~  134 (383)
                      +.++.+++.+.+. .+...+..++.++..++.... .........+++.+.+.+.++  +.+++..++.++..+... ..
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~-~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF-TK  205 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT-TH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHh-hh
Confidence            3455666666432 355677788888888876542 223334466788888888754  578999999999999876 33


Q ss_pred             hHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHH
Q 037142          135 DEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN  213 (383)
Q Consensus       135 ~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~n  213 (383)
                      .... ......+.+.+...+.+++++++..++.++..++...+......+.....+.+.....+. ++.++..++..+..
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSN  284 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence            2211 122223667788888999999999999999999876654433333333444555556666 88899999988888


Q ss_pred             HhcCCHHHHHHH--------------------HhcCChHHHHHHhhc-------CchhHHHHHHHHHHHhcCCCCHHHHH
Q 037142          214 ITAGNREQIQAV--------------------IDAGLIGPLVNLLQN-------AVFYIKKEAAWAISNATFGGTHEQIK  266 (383)
Q Consensus       214 l~~~~~~~~~~~--------------------~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~  266 (383)
                      ++..........                    ....+.+.+...+.+       .+..++..|..++..++...+.+...
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  364 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP  364 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh
Confidence            764221111110                    011123344444432       23468888888888887654333333


Q ss_pred             HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          267 YLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       267 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                      .     +++.+.+.++++++.++..++.+|..++..+......        .+     -...++.+...+.++++.|+..
T Consensus       365 ~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~--------~~-----l~~i~~~l~~~l~d~~~~VR~~  426 (458)
T d1ibrb_         365 H-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PL-----VIQAMPTLIELMKDPSVVVRDT  426 (458)
T ss_dssp             H-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC--------TT-----TTTHHHHHHHGGGCSCHHHHHH
T ss_pred             H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH--------HH-----HHHHHHHHHHHhCCCCHHHHHH
Confidence            3     5677888889999999999999999887654322211        00     1234577788899999999999


Q ss_pred             HHHHHHHhcC
Q 037142          347 SAKILETYWC  356 (383)
Q Consensus       347 a~~~l~~~~~  356 (383)
                      |..++.++.+
T Consensus       427 a~~~l~~i~~  436 (458)
T d1ibrb_         427 AAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.1e-08  Score=100.76  Aligned_cols=327  Identities=11%  Similarity=0.115  Sum_probs=200.7

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHH-------------------------------
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLT-------------------------------   66 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-------------------------------   66 (383)
                      +++.++++|+++++++|..|+.+|+.++..-++....    .+++.|+.                               
T Consensus        46 i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~----~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~  121 (1207)
T d1u6gc_          46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS  121 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH----HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccc
Confidence            4788999999999999999999999887543321110    01222222                               


Q ss_pred             ----------------HhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhcc
Q 037142           67 ----------------QLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCD  130 (383)
Q Consensus        67 ----------------~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~  130 (383)
                                      .+.+..+..++..++.++..+....+..-......+++.+...+.++++.+|+.++.++..++.
T Consensus       122 ~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~  201 (1207)
T d1u6gc_         122 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM  201 (1207)
T ss_dssp             CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                            2223345556666666666665544332223345677778888889999999999999999987


Q ss_pred             CCCchHHHHHHHhCcHHHHHHhcC-CCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHH
Q 037142          131 GGKNDEIQAVIEAGVCPRLVKLLG-HPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACW  209 (383)
Q Consensus       131 ~~~~~~~~~~~~~~~i~~l~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~  209 (383)
                      . .++.   .. ..+++.++..+. +.+...+..++.+++.++...+......+ ..+++.+...+.+. ++.++..++.
T Consensus       202 ~-~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~  274 (1207)
T d1u6gc_         202 S-CGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQ  274 (1207)
T ss_dssp             T-C-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHH
T ss_pred             H-CCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHH
Confidence            6 2221   11 124566665553 45566777788888888866554333222 36788899999888 8999999999


Q ss_pred             HHHHHhcCCHH----HHHHHHh--cC------------------------------ChHHHHHHhhcCchhHHHHHHHHH
Q 037142          210 IISNITAGNRE----QIQAVID--AG------------------------------LIGPLVNLLQNAVFYIKKEAAWAI  253 (383)
Q Consensus       210 ~l~nl~~~~~~----~~~~~~~--~~------------------------------~l~~L~~ll~~~~~~v~~~a~~~l  253 (383)
                      ++..++...+.    ....++.  ..                              ..+.......+.+..+|..|+.++
T Consensus       275 ~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L  354 (1207)
T d1u6gc_         275 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL  354 (1207)
T ss_dssp             HHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHH
T ss_pred             HHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHH
Confidence            99888754321    1111110  00                              000111112234568999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCC---CCcccHHHHHHHH--hcc
Q 037142          254 SNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTD---IGDVNQYAQLVEE--AKG  328 (383)
Q Consensus       254 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~--~~~  328 (383)
                      ..+..... +....+ -..+++.++..+.+.++.++..+..++..++............   ..........+..  ...
T Consensus       355 ~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i  432 (1207)
T d1u6gc_         355 DAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI  432 (1207)
T ss_dssp             HHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred             HhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHH
Confidence            99987643 333332 3468999999999999999999999998888654322111000   0000001111111  234


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 037142          329 LEKIENLQRHDNYEIHEKSAKILETYWCG  357 (383)
Q Consensus       329 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  357 (383)
                      ++.+.+...+++..++..+..++..+...
T Consensus       433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~  461 (1207)
T d1u6gc_         433 VKALHKQMKEKSVKTRQCCFNMLTELVNV  461 (1207)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            56677778888999988888877766543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=9.3e-08  Score=82.79  Aligned_cols=321  Identities=11%  Similarity=0.074  Sum_probs=205.2

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCChHH---HHHHHhcCC-h-HHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142           17 GAVPIFVKLLAS-PSDDIRMQSVWALGNIAAESPRF---RDLVLGEAA-L-IPLLTQLNNHENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        17 g~i~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~g~-i-~~L~~~L~~~~~~~~~~~a~~~L~~l~~~   90 (383)
                      .++..++++|.. ..+++..+.+..+..+..+++..   .+.+.+... . +++...+ ...+.-....+...+..++..
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhc
Confidence            368889999986 78899999999888887665422   222222221 1 2344444 455566667777777888776


Q ss_pred             CCCCCh--hhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHH--HhCcHHHHHHhcCC-----------
Q 037142           91 KPRPIF--DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI--EAGVCPRLVKLLGH-----------  155 (383)
Q Consensus        91 ~~~~~~--~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~i~~l~~~L~~-----------  155 (383)
                      .+....  .........+..+...++.+....++.++..+.+.  ++....+.  +...++.++..|+.           
T Consensus       153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~--~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             cccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC--ccHHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            533211  11233344455555677888888888999999976  44443332  33345566665532           


Q ss_pred             ------CChhhHHHHHHHHhhhhcCCCccccceecC--CChHHHHHhhccccchhHHHHHHHHHHHHhcCC----H-HHH
Q 037142          156 ------PSQSVLTQALHTVGNIARGDYSQTLYIINC--GALPYLLGLLIDNHKTSIKNYACWIISNITAGN----R-EQI  222 (383)
Q Consensus       156 ------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~----~-~~~  222 (383)
                            ...+++..++-+++.++...+ ....+.+.  +.++.++.+++....+++.+-++.++.|+....    + ...
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~  309 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  309 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence                  134778999999999987443 44445444  347888888876658999999999999998642    1 223


Q ss_pred             HHHHhcCChHHHHHHhhc--CchhHHHHHHHHHH-------Hhc--------------CCCCHHHH-HHHHHc-------
Q 037142          223 QAVIDAGLIGPLVNLLQN--AVFYIKKEAAWAIS-------NAT--------------FGGTHEQI-KYLERE-------  271 (383)
Q Consensus       223 ~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~-------~l~--------------~~~~~~~~-~~l~~~-------  271 (383)
                      ..++..++++.+-.+...  .++++....-..-.       .++              .. +|.+. ..+...       
T Consensus       310 ~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~W-SP~H~se~FW~EN~~kf~e  388 (477)
T d1ho8a_         310 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFKK  388 (477)
T ss_dssp             HHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCC-CCCcCChhHHHHHHHhhcc
Confidence            344566666655444433  35555443222111       111              11 11111 122211       


Q ss_pred             ---CChHHHHhhcC----------CCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC
Q 037142          272 ---GCIKPLCDLLL----------CPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH  338 (383)
Q Consensus       272 ---~~i~~L~~ll~----------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~  338 (383)
                         .++..|+++++          +.|+.+...||.=+..+++..+.             -+..++..|+-+++.+|+.|
T Consensus       389 ~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-------------gr~il~~lg~K~~vM~Lm~h  455 (477)
T d1ho8a_         389 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNH  455 (477)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcC
Confidence               25788888885          34677888899999999987553             45668899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 037142          339 DNYEIHEKSAKILETYW  355 (383)
Q Consensus       339 ~~~~v~~~a~~~l~~~~  355 (383)
                      +|++|+..|+..+..+.
T Consensus       456 ~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         456 SDSRVKYEALKATQAII  472 (477)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999887754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=2e-07  Score=89.63  Aligned_cols=280  Identities=12%  Similarity=0.063  Sum_probs=175.2

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           19 VPIFVKLLASPSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        19 i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      -..+++.+.++++.+|..++.+++.++... +...    -...++.|++.+.++.+...+..++.++..++.........
T Consensus        97 k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            355677778889999999999999987421 1100    01235677777754556778888999999998765332222


Q ss_pred             hh---hchhHHHHHhhc--cCCHHHHHHHHHHHHHhccCCCchHHH-HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhh
Q 037142           98 QV---RPCLPTLAQLVH--SNDEHVMSNACWGLSLLCDGGKNDEIQ-AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI  171 (383)
Q Consensus        98 ~~---~~~i~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l  171 (383)
                      ..   ..+++.+.+.+.  ..+..++..++.++.++... ...... ......+++.+...+.+++++++..++.++..+
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            23   334444444443  44588999999999988876 332221 111223677888899999999999999999999


Q ss_pred             hcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHH---------------------HHHH-----
Q 037142          172 ARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ---------------------IQAV-----  225 (383)
Q Consensus       172 ~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~---------------------~~~~-----  225 (383)
                      +...+......+..-+...+.....+. ++.++..++..+..++......                     ...+     
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            865443222111111112223333444 6777777766665543211000                     0000     


Q ss_pred             -------------------------------HhcCChHHHHH----HhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037142          226 -------------------------------IDAGLIGPLVN----LLQNAVFYIKKEAAWAISNATFGGTHEQIKYLER  270 (383)
Q Consensus       226 -------------------------------~~~~~l~~L~~----ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~  270 (383)
                                                     ....+++.+..    .+.+.+...+..|+.+++.++............+
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~  410 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH  410 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence                                           00112233222    2334577888889999999988766554444333


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchh
Q 037142          271 EGCIKPLCDLLLCPDPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       271 ~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~  305 (383)
                       .+++.++..+.++++.++..+++++..++.....
T Consensus       411 -~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T d2bpta1         411 -QALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             -HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             -HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence             3788999999999999999999999999876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.8e-08  Score=98.85  Aligned_cols=314  Identities=11%  Similarity=0.102  Sum_probs=200.3

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh
Q 037142           18 AVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD   97 (383)
Q Consensus        18 ~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~   97 (383)
                      +++.|+..+.++++.+|..|+.+|+.++...+..   . -...++.+++.+.++.+...++.++.+++.++...+..-..
T Consensus       173 il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  248 (1207)
T d1u6gc_         173 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE  248 (1207)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHH
Confidence            4666777788899999999999999998654321   1 12346777777755556667777888888888765443334


Q ss_pred             hhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhc------------------------
Q 037142           98 QVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLL------------------------  153 (383)
Q Consensus        98 ~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L------------------------  153 (383)
                      ....+++.+.+.+.+++.++++.++.++..+... .+........ .+++.+...+                        
T Consensus       249 ~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~  326 (1207)
T d1u6gc_         249 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-CPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGD  326 (1207)
T ss_dssp             SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC-TTCCCHHHHH-HHHHHHTTCCCCC---------------------
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-ChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccc
Confidence            4578999999999999999999999999888766 3222211111 1222222222                        


Q ss_pred             -------------CCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCH-
Q 037142          154 -------------GHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR-  219 (383)
Q Consensus       154 -------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~-  219 (383)
                                   .+..+.++..++.+|..+....++...... ..+++.++..+.+. ++.++..++.++..+..... 
T Consensus       327 ~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~  404 (1207)
T d1u6gc_         327 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRP  404 (1207)
T ss_dssp             ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccc
Confidence                         224567899999999999876664433332 35788899988888 89999999988877752100 


Q ss_pred             ---------------HHHHHHH--hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcC
Q 037142          220 ---------------EQIQAVI--DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLL  282 (383)
Q Consensus       220 ---------------~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  282 (383)
                                     .....+.  -..+++.+...+.+.+..+|..+..++..+..........++.  .+++.+...+.
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~  482 (1207)
T d1u6gc_         405 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLN  482 (1207)
T ss_dssp             C------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTT
T ss_pred             hhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHh
Confidence                           0001111  1234566677777888999999999988886532211112211  14666777766


Q ss_pred             CC--CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 037142          283 CP--DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETY  354 (383)
Q Consensus       283 ~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~  354 (383)
                      ..  ...++..++.++..++.......           +...+  ....+.+.....++.+.+...+...+..+
T Consensus       483 ~~~~~~~~~~~al~~l~~l~~~~~~~~-----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l  543 (1207)
T d1u6gc_         483 DKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  543 (1207)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhccHHH-----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence            54  44677888888888887544321           11111  22345566667777777777666555443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.6e-07  Score=90.77  Aligned_cols=319  Identities=12%  Similarity=0.080  Sum_probs=197.3

Q ss_pred             CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCChHHHHHHhcC-CCChhHHHHHHHHHHhhcCCCC
Q 037142           17 GAVPIFVKLLAS--PSDDIRMQSVWALGNIAAES-PRFRDLVLGEAALIPLLTQLNN-HENLSMKRIATWTLSNLCGGKP   92 (383)
Q Consensus        17 g~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~-~~~~~~~~~a~~~L~~l~~~~~   92 (383)
                      ++++.+.+.+.+  ..+.++..++.+|..++.+- ++.-... -..+++.+++.+.+ +++..++..++.++.+......
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            567888888865  34678888999999987422 2111111 12346777777743 3467889999999888775431


Q ss_pred             C--CChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhh
Q 037142           93 R--PIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGN  170 (383)
Q Consensus        93 ~--~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~  170 (383)
                      .  ........+++.+...+.+++++++..++.++..++.. ..+.........+.+.+...+.++++.+...++..+..
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            1  11222244677777888889999999999999999876 44444444444466667777888888888888887777


Q ss_pred             hhcCCCcc----------------ccceecC----CChHHHHHhhccc------cchhHHHHHHHHHHHHhcCCHHHHHH
Q 037142          171 IARGDYSQ----------------TLYIINC----GALPYLLGLLIDN------HKTSIKNYACWIISNITAGNREQIQA  224 (383)
Q Consensus       171 l~~~~~~~----------------~~~l~~~----~~i~~l~~ll~~~------~~~~~~~~a~~~l~nl~~~~~~~~~~  224 (383)
                      ++......                .......    .+++.+...+...      ....++..+..++..++...+..   
T Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---  362 (876)
T d1qgra_         286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---
Confidence            66321100                0000001    1223333333221      13357777777777765322111   


Q ss_pred             HHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          225 VIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       225 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ++ ..+++.+...+.+++...|..++.+++.+............. ..+++.+...+.++++.++..+++++..+++...
T Consensus       363 ~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcc
Confidence            11 113445555566788899999999999998776555544433 2478899999999999999999999999998654


Q ss_pred             hcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 037142          305 AEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW  355 (383)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~  355 (383)
                      .....       ..+...     .++.+.+..+ .++.+...+...+..+.
T Consensus       441 ~~~~~-------~~~~~~-----~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         441 EAAIN-------DVYLAP-----LLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             GGTSS-------TTTHHH-----HHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             hhhhh-------HHHhhh-----HHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            32211       011111     1233333333 46677777766665554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.68  E-value=1.8e-09  Score=76.55  Aligned_cols=109  Identities=21%  Similarity=0.289  Sum_probs=90.6

Q ss_pred             hCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChhhhhchhHH
Q 037142           26 LASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPT  105 (383)
Q Consensus        26 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~  105 (383)
                      |+++++.+|..|+++|+.+..            ..++.|+..| +++++.++..++++|+++..          ...++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHH
Confidence            467788889999888876532            3478899999 68899999999999998753          347899


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHh
Q 037142          106 LAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG  169 (383)
Q Consensus       106 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~  169 (383)
                      +..+++++++.++..++++|..+...            +.++.|..+++++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~~------------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGGE------------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCSH------------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCcc------------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999988632            25688889999999999999988874

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.3e-06  Score=75.60  Aligned_cols=275  Identities=16%  Similarity=0.129  Sum_probs=173.3

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChH---HHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCCh
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPR---FRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIF   96 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~---~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (383)
                      +.+..++...+.-+...++..+..++.....   ..+.+...   ..+...+....+......++.++..+.+..+.+..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~---~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHh---hHHHHHhhcccccchHHHHHHHHHHHhcCccHHHH
Confidence            3455556556666777777888888765432   22333221   23334444677888888999999999887644433


Q ss_pred             h--hhhchhHHHHHhhc----c-------------CCHHHHHHHHHHHHHhccCCCchHHHHHHHh--CcHHHHHHhcCC
Q 037142           97 D--QVRPCLPTLAQLVH----S-------------NDEHVMSNACWGLSLLCDGGKNDEIQAVIEA--GVCPRLVKLLGH  155 (383)
Q Consensus        97 ~--~~~~~i~~l~~ll~----~-------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~i~~l~~~L~~  155 (383)
                      .  .....++.++..+.    +             ...+++.+++.+++-++-.  .+....+.+.  +.++.++.+++.
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~~~~~i~~l~~i~~~  279 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN--PVFANELVQKYLSDFLDLLKLVKI  279 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC--HHHHHHHHHhhhHHHHHHHHHHHh
Confidence            2  12334455554443    1             1258899999999999975  5555666554  347888888865


Q ss_pred             -CChhhHHHHHHHHhhhhcCCCcc-----ccceecCCChHHHHHhhccc--cchhHHHHHHHHHHHHh------------
Q 037142          156 -PSQSVLTQALHTVGNIARGDYSQ-----TLYIINCGALPYLLGLLIDN--HKTSIKNYACWIISNIT------------  215 (383)
Q Consensus       156 -~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~i~~l~~ll~~~--~~~~~~~~a~~~l~nl~------------  215 (383)
                       ...++..-++.++.|++......     ...++..++++.+ ..|...  .|+++.... ..|....            
T Consensus       280 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l-~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~  357 (477)
T d1ho8a_         280 TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTV-QSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDE  357 (477)
T ss_dssp             CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHH-HHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHH-HHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHH
Confidence             67889999999999998654322     2223444555444 444321  134433221 1111110            


Q ss_pred             ----------cCCHHHH-HHHHh----------cCChHHHHHHhh----------cCchhHHHHHHHHHHHhcCCCCHHH
Q 037142          216 ----------AGNREQI-QAVID----------AGLIGPLVNLLQ----------NAVFYIKKEAAWAISNATFGGTHEQ  264 (383)
Q Consensus       216 ----------~~~~~~~-~~~~~----------~~~l~~L~~ll~----------~~~~~v~~~a~~~l~~l~~~~~~~~  264 (383)
                                .-+|... +.+..          ..++..|++++.          +.++.+-.-||.=|+.++..- |..
T Consensus       358 Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~-P~g  436 (477)
T d1ho8a_         358 YVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PES  436 (477)
T ss_dssp             HHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTH
T ss_pred             HHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC-cch
Confidence                      1111111 11221          124788999986          346777788899999999873 466


Q ss_pred             HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 037142          265 IKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKV  302 (383)
Q Consensus       265 ~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~  302 (383)
                      +..+-+.|+=..+++++.++|++|+.+|+.|+..++..
T Consensus       437 r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         437 IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            66666678888899999999999999999999988754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=6.9e-07  Score=85.83  Aligned_cols=269  Identities=11%  Similarity=0.051  Sum_probs=170.4

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCC-CChhHHHHHHHHHHhhcCCCCCC----
Q 037142           20 PIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH-ENLSMKRIATWTLSNLCGGKPRP----   94 (383)
Q Consensus        20 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-~~~~~~~~a~~~L~~l~~~~~~~----   94 (383)
                      ..|...+.++|+++|.+|-..|..+...++        .+.+..+.+.+.+. .+..+|..|+-.|.|........    
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           8 QLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            445555677899999999999988875331        13466788888543 35678888888888877643110    


Q ss_pred             ---------ChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCC-hhhHHHH
Q 037142           95 ---------IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPS-QSVLTQA  164 (383)
Q Consensus        95 ---------~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~-~~v~~~a  164 (383)
                               .......+-..+++.+.++++.++..++.++..++.. .-+...+   ..+++.++..+.+++ ..++..+
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~-~~p~~~w---peli~~L~~~~~s~~~~~~~~~a  155 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI-ELPHGAW---PELMKIMVDNTGAEQPENVKRAS  155 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HGGGTCC---HHHHHHHHHHTSTTSCHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hCCcCch---HHHHHHHHHHhcCCCcHHHHHHH
Confidence                     1111233455677778888999999999999998854 1111000   125677888887754 5677889


Q ss_pred             HHHHhhhhcCCCccccceecC--CChHHHHHhhc-cccchhHHHHHHHHHHHHhcCCHHHHH-HHHhcCChHHHHHHhhc
Q 037142          165 LHTVGNIARGDYSQTLYIINC--GALPYLLGLLI-DNHKTSIKNYACWIISNITAGNREQIQ-AVIDAGLIGPLVNLLQN  240 (383)
Q Consensus       165 ~~~L~~l~~~~~~~~~~l~~~--~~i~~l~~ll~-~~~~~~~~~~a~~~l~nl~~~~~~~~~-~~~~~~~l~~L~~ll~~  240 (383)
                      +.+|..++...+...+.+...  .++..++..+. ...+..++..++.++.++...-+.... ......+++.+...+.+
T Consensus       156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (861)
T d2bpta1         156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA  235 (861)
T ss_dssp             HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcC
Confidence            999999986554333322221  22333333333 222678999999999998865543221 11123356677788888


Q ss_pred             CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 037142          241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILK  301 (383)
Q Consensus       241 ~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~  301 (383)
                      ++++++..++.++..++.........++ ..-+...+....++.+++++..++..+..+..
T Consensus       236 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         236 EDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999998754221112221 11122334455667788888888877776654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.51  E-value=1.3e-08  Score=71.98  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             cCCCChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChH
Q 037142          153 LGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIG  232 (383)
Q Consensus       153 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~  232 (383)
                      |.++|+.|+..++++|+.+.            ...++.|+..+.++ ++.+|..++++|+++..           .+.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch-----------hhhHH
Confidence            46778888888887776542            13578899999988 99999999999987642           22467


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          233 PLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       233 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                      .|..++.++++.||..|+++|+.+..   +         +.++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999999999999999999998842   2         24677888999999999999988874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-06  Score=84.68  Aligned_cols=279  Identities=13%  Similarity=0.087  Sum_probs=173.3

Q ss_pred             ChHHHHHhhCC--CChHHHHHHHHHHHHHhcCChHHHHH-HHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCC
Q 037142           18 AVPIFVKLLAS--PSDDIRMQSVWALGNIAAESPRFRDL-VLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRP   94 (383)
Q Consensus        18 ~i~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (383)
                      +++.+++.+.+  ++.+++..|+.++.+........... ....-+++.+...+ +++++.++..++.++..++...+..
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~~~~  251 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            46677777764  45789999999998877543221111 11111245566666 6788999999999999998765433


Q ss_pred             Chhhh-hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHH--------------------HHHHHhCcHHHHHHhc
Q 037142           95 IFDQV-RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEI--------------------QAVIEAGVCPRLVKLL  153 (383)
Q Consensus        95 ~~~~~-~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~i~~l~~~L  153 (383)
                      ..... ..+.+.+.....+.+.+++..++..+..++.. .....                    .......+++.+...+
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  330 (876)
T d1qgra_         252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            22222 44566666777788888888888877777643 11100                    0011112445555554


Q ss_pred             CC-------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 037142          154 GH-------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVI  226 (383)
Q Consensus       154 ~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~  226 (383)
                      ..       ++..++..+..++..++......   ++. .+++.+...+.+. +...+..++..++.+..+.......-.
T Consensus       331 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~  405 (876)
T d1qgra_         331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL  405 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            32       33457778888887777443321   111 2344555666677 888999999999998875433222223


Q ss_pred             hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          227 DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       227 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      -..+++.+...+.++++.+|..|+|+++.++............-..+++.+...+. .++.++..+++++.++.....
T Consensus       406 ~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999875421110000000113455555554 467889999999999887544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=0.00024  Score=57.53  Aligned_cols=225  Identities=12%  Similarity=0.042  Sum_probs=163.3

Q ss_pred             HHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCCCCCCChh---hh---hchhHHHHHhhccCCHHHHHHHHHHHH
Q 037142           53 DLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFD---QV---RPCLPTLAQLVHSNDEHVMSNACWGLS  126 (383)
Q Consensus        53 ~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~i~~l~~ll~~~~~~~~~~~~~~l~  126 (383)
                      ..+...+.+..|+..| ..-+-+.+..+..+++++.+........   ..   ..++..|+....  ++++...+-..|.
T Consensus        63 ~e~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHH
Confidence            3455668888888888 6678899999999999999877333211   11   345555555554  4556666777777


Q ss_pred             HhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccceecC---CChHHHHHhhccccchhH
Q 037142          127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC---GALPYLLGLLIDNHKTSI  203 (383)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~l~~ll~~~~~~~~  203 (383)
                      ..+++  ....+.+.....+..+++++..++-++...|..++..+....+.....++..   .++..+..++.++ +.-+
T Consensus       140 Ecik~--e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVt  216 (330)
T d1upka_         140 ECIRH--EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVT  216 (330)
T ss_dssp             HHHTS--HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHH
T ss_pred             HHHhh--HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHH
Confidence            77776  6667777777788999999999999999999999998886665444445443   3566777888888 9999


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCC--CHHHHHHHHH--cCChHH
Q 037142          204 KNYACWIISNITAG--NREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGG--THEQIKYLER--EGCIKP  276 (383)
Q Consensus       204 ~~~a~~~l~nl~~~--~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~l~~--~~~i~~  276 (383)
                      ++.++..|+.+...  +.......+ +..-+..++.+|.+.+..++-+|..++--+..+.  +++....+..  ..++..
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~f  296 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF  296 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHH
Confidence            99999999998753  333333333 5666899999999999999999999998888775  3444444443  245555


Q ss_pred             HHhhcCC
Q 037142          277 LCDLLLC  283 (383)
Q Consensus       277 L~~ll~~  283 (383)
                      |-++..+
T Consensus       297 l~~f~~d  303 (330)
T d1upka_         297 LSKFQND  303 (330)
T ss_dssp             HHHTTTT
T ss_pred             HHhCCCC
Confidence            6665443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.0037  Score=50.43  Aligned_cols=208  Identities=13%  Similarity=0.086  Sum_probs=152.4

Q ss_pred             HHHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccc----cceecCCChHHHHHhhccccchhHHHHHHHHHHHH
Q 037142          139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT----LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNI  214 (383)
Q Consensus       139 ~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl  214 (383)
                      .+...+++..++..|..=+-+.+..+..++.++........    +.+...  -+.+..++....++++...+-..|.-+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34555788889999988888999999999999986544322    112211  123333333332556666666666666


Q ss_pred             hcCCHHHHHHHHhcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHHHH
Q 037142          215 TAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLERE---GCIKPLCDLLLCPDPQIVTV  291 (383)
Q Consensus       215 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~  291 (383)
                      +.. +.....++....+..+.+++..++.++...|..++-.+.... +.....++..   .++...-.++.+++.-++.+
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            554 577888888888999999999999999999999998887663 4444444443   36677778999999999999


Q ss_pred             HHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 037142          292 CLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCGRVV  360 (383)
Q Consensus       292 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  360 (383)
                      ++..|..++....+.          ..+.+++.+..-+..+..++.+++..|+-.|..+..-|....+.
T Consensus       220 SlKLLgelLldr~N~----------~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         220 SLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHhhhhHH----------HHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999999999754432          34566777777788889999999999999999888888777664

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.44  E-value=0.00015  Score=57.25  Aligned_cols=80  Identities=18%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             HHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037142            8 EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNL   87 (383)
Q Consensus         8 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l   87 (383)
                      |.+..-...--+..|..+++++++.||..|++.|.                  .+.+..++ .+++..++..++..+   
T Consensus        57 e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~-~D~d~~VR~~aa~~l---  114 (233)
T d1lrva_          57 ERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADRL---  114 (233)
T ss_dssp             HHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHHS---
T ss_pred             HHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHh-cCCChhHHHHHHhcc---
Confidence            34444444445566666667777777766654321                  23344444 556666666554432   


Q ss_pred             cCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHH
Q 037142           88 CGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACW  123 (383)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~  123 (383)
                      .              .+.|..++.++++.++..++.
T Consensus       115 ~--------------~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_         115 P--------------LEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             C--------------HHHHHHHhcCCCHHHHHHHHh
Confidence            1              123445556666666666544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.0032  Score=60.59  Aligned_cols=267  Identities=9%  Similarity=0.066  Sum_probs=137.3

Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHH----hcCChHHH----HHHhc--CCCChhHHHHHHHHHHhhcCCCCCCChhh
Q 037142           29 PSDDIRMQSVWALGNIAAESPRFRDLVL----GEAALIPL----LTQLN--NHENLSMKRIATWTLSNLCGGKPRPIFDQ   98 (383)
Q Consensus        29 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~----~~g~i~~L----~~~L~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~   98 (383)
                      .++..++.++.+++.++...........    .....+.+    ...+.  ..+...++..++|+++..+....   ...
T Consensus       417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~  493 (959)
T d1wa5c_         417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ  493 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHH
Confidence            5677788888888877642110000000    00111122    22232  23456788899999999886532   234


Q ss_pred             hhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC----------chHHHHHHHhCcHHHHHHhcCCCCh-----hhHHH
Q 037142           99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK----------NDEIQAVIEAGVCPRLVKLLGHPSQ-----SVLTQ  163 (383)
Q Consensus        99 ~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----------~~~~~~~~~~~~i~~l~~~L~~~~~-----~v~~~  163 (383)
                      ...+++.++.++.+++..++..+++++..++....          .+......+ .+++.++..+.....     .....
T Consensus       494 ~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~  572 (959)
T d1wa5c_         494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEF  572 (959)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHH
Confidence            57899999999999999999999999999986411          011111111 134455555533221     11234


Q ss_pred             HHHHHhhhhcCCCccccceecCCChHHHHHhh----ccccchhHHHHHHHHHHHHhcC-CHHHHHHHHhcCChHHHHHHh
Q 037142          164 ALHTVGNIARGDYSQTLYIINCGALPYLLGLL----IDNHKTSIKNYACWIISNITAG-NREQIQAVIDAGLIGPLVNLL  238 (383)
Q Consensus       164 a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll----~~~~~~~~~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll  238 (383)
                      ++.++..+.....+....... .+++.+...+    +++.++.....+..+++.+... +++.... +...++|.+..++
T Consensus       573 ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~  650 (959)
T d1wa5c_         573 LMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVF  650 (959)
T ss_dssp             HHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHH
Confidence            566666555333222221111 2334444433    2333456666777777777643 2232222 3345677777777


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhch
Q 037142          239 QNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       239 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      ..........+...+..+..... ..-..+  ...++.++.............+...+.+++..+.
T Consensus       651 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  713 (959)
T d1wa5c_         651 SEDIQEFIPYVFQIIAFVVEQSA-TIPESI--KPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDS  713 (959)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHCS-SCCTTT--GGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHG
T ss_pred             hccchhHHHHHHHHHHHHHHhCC-CccHHH--HHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence            76666666666666655543221 000000  0123333332222333344555566666665544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.097  Score=49.85  Aligned_cols=226  Identities=12%  Similarity=0.108  Sum_probs=121.5

Q ss_pred             CChhHHHHHHHHHHhhcCCCCCC-----Chh----hhhchhHHHHHhhc---cCCHHHHHHHHHHHHHhccCCCchHHHH
Q 037142           72 ENLSMKRIATWTLSNLCGGKPRP-----IFD----QVRPCLPTLAQLVH---SNDEHVMSNACWGLSLLCDGGKNDEIQA  139 (383)
Q Consensus        72 ~~~~~~~~a~~~L~~l~~~~~~~-----~~~----~~~~~i~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (383)
                      .+...+..++.+++.+.......     ...    ...-+.+.+...+.   ...+.++..++|+++..+.. ....   
T Consensus       417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~-~~~~---  492 (959)
T d1wa5c_         417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTKA---  492 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCHH---
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhh-ccHH---
Confidence            46677778888787776432111     011    11122233333333   34477999999999999876 2221   


Q ss_pred             HHHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCCccccc--ee-c---CCC----hHHHHHhhccccch----hHHH
Q 037142          140 VIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLY--II-N---CGA----LPYLLGLLIDNHKT----SIKN  205 (383)
Q Consensus       140 ~~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~--l~-~---~~~----i~~l~~ll~~~~~~----~~~~  205 (383)
                      ... .+++.++.+|.+++..++..|++++..++.........  .. .   ...    +..+...+......    ....
T Consensus       493 ~~~-~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~  571 (959)
T d1wa5c_         493 QLI-ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (959)
T ss_dssp             HHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             HHH-HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence            122 37899999999999999999999999998543321110  00 0   112    33333433322111    1123


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh----c-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ----N-AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDL  280 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~----~-~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~l  280 (383)
                      .++.++..+....++...... ..+++.+..++.    + .++.....+..+++.+....+++....+ ...++|.+...
T Consensus       572 ~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~  649 (959)
T d1wa5c_         572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTV  649 (959)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHH
Confidence            355566555421111111100 113344444432    2 2456666677777777654444444443 23467777777


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhch
Q 037142          281 LLCPDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       281 l~~~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +.....+....++..+..+.....
T Consensus       650 ~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         650 FSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             HhccchhHHHHHHHHHHHHHHhCC
Confidence            776666666777777777766554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.18  E-value=0.0084  Score=46.86  Aligned_cols=141  Identities=13%  Similarity=0.097  Sum_probs=77.3

Q ss_pred             CChHHHHHHHhCCChHHHHHhhCCCChHHHHHHHHHHH-----HHh-cCChHHHHHHHhcCChHHHHHHhcCCCChhHHH
Q 037142            5 KTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALG-----NIA-AESPRFRDLVLGEAALIPLLTQLNNHENLSMKR   78 (383)
Q Consensus         5 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-----~l~-~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~   78 (383)
                      .+++.+...+..=..+.|..++.+++.+++..++..+.     .+. ..++..|....+....+.|..++ ++++..++.
T Consensus        78 ~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~-~D~d~~VR~  156 (233)
T d1lrva_          78 SDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM-RDEDRQVRK  156 (233)
T ss_dssp             SSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT-TCSCHHHHH
T ss_pred             CCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh-cCCCHHHHH
Confidence            45566777776544677888888899999988766441     111 12233444443333333344444 455555555


Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHH-----HHhccCCCchHHHH-HHHhCcHHHHHHh
Q 037142           79 IATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGL-----SLLCDGGKNDEIQA-VIEAGVCPRLVKL  152 (383)
Q Consensus        79 ~a~~~L~~l~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l-----~~l~~~~~~~~~~~-~~~~~~i~~l~~~  152 (383)
                      .++..                 ...+.+..+++++++.++..++..+     ..+... ++..... ..+. +.+.++..
T Consensus       157 ~aA~~-----------------~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D-~d~~VR~aaae~-~~~~ll~~  217 (233)
T d1lrva_         157 LVAKR-----------------LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHD-PDWTVRLAAVEH-ASLEALRE  217 (233)
T ss_dssp             HHHHH-----------------SCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGC-SSHHHHHHHHHH-SCHHHHHH
T ss_pred             HHHHh-----------------cCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhC-CCHHHHHHHHHh-ccHHHHHH
Confidence            44431                 1234456666777777777777543     233433 3333332 2222 34556666


Q ss_pred             cCCCChhhHHHHH
Q 037142          153 LGHPSQSVLTQAL  165 (383)
Q Consensus       153 L~~~~~~v~~~a~  165 (383)
                      |.++++.|+..+.
T Consensus       218 L~D~d~~VR~aA~  230 (233)
T d1lrva_         218 LDEPDPEVRLAIA  230 (233)
T ss_dssp             CCCCCHHHHHHHH
T ss_pred             hCCCCHHHHHHHH
Confidence            7777777776654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.94  E-value=0.14  Score=42.22  Aligned_cols=163  Identities=13%  Similarity=0.020  Sum_probs=94.9

Q ss_pred             chhHHHHHhhccCCHH--HHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC----CChhhHHHHHHHHhhhhc-
Q 037142          101 PCLPTLAQLVHSNDEH--VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH----PSQSVLTQALHTVGNIAR-  173 (383)
Q Consensus       101 ~~i~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~----~~~~v~~~a~~~L~~l~~-  173 (383)
                      ..+..+.+++.+++..  -....++.+.... .   +...      .+..+..++.+    .++.+...+.-++++++. 
T Consensus        88 ~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~-~---Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~  157 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSAEATQIVASTLSNQ-Q---ATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR  157 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC-C---CCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHhccC-C---CCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHH
Confidence            3666677777766533  2233334443332 2   2222      34556666665    567788888888877763 


Q ss_pred             ---CCCccccceecCCChHHHHHhh----ccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc------
Q 037142          174 ---GDYSQTLYIINCGALPYLLGLL----IDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN------  240 (383)
Q Consensus       174 ---~~~~~~~~l~~~~~i~~l~~ll----~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~------  240 (383)
                         ..+.+..     .+++.+...+    ... +..-+..++++|||+..           .+.++.+..++..      
T Consensus       158 ~c~~~~~~~~-----~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~  220 (336)
T d1lsha1         158 YCANTVSCPD-----ELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLD  220 (336)
T ss_dssp             HHTTCSSCCG-----GGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCC
T ss_pred             HhcCCCCCcH-----HHHHHHHHHHHHhhccc-chHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccc
Confidence               2222222     3344444444    444 66667788999999953           2245666666643      


Q ss_pred             -CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037142          241 -AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKALE  297 (383)
Q Consensus       241 -~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l~  297 (383)
                       .+..+|..|++++.++.... +...+.+    +++.+.+  ...++++|..|...+.
T Consensus       221 ~~~~~vR~aAi~Alr~~~~~~-p~~v~~~----l~~i~~n--~~e~~EvRiaA~~~lm  271 (336)
T d1lsha1         221 EYSTRVQAEAIMALRNIAKRD-PRKVQEI----VLPIFLN--VAIKSELRIRSCIVFF  271 (336)
T ss_dssp             CSCHHHHHHHHHTTTTGGGTC-HHHHHHH----HHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhhcC-cHHHHHH----HHHHHcC--CCCChHHHHHHHHHHH
Confidence             25679999999999998763 3333321    1222222  3457889988777653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.89  E-value=0.35  Score=39.69  Aligned_cols=172  Identities=14%  Similarity=0.112  Sum_probs=110.9

Q ss_pred             hHHHHHHhcC---CCChhHHHHHHHHHHhhcC----CCCCCChhhhhchhHHHHHhhccCCHHHHHHHHHHHHHhccCCC
Q 037142           61 LIPLLTQLNN---HENLSMKRIATWTLSNLCG----GKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGK  133 (383)
Q Consensus        61 i~~L~~~L~~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  133 (383)
                      +..+..++..   ..++.++..++-+++++..    ..+.+.......+...+.+..+.++.+-...++.+|+|+...  
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  202 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  202 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH--
Confidence            4455566632   1356777777777776653    334444444455555566666677777777889999998743  


Q ss_pred             chHHHHHHHhCcHHHHHHhcCC-------CChhhHHHHHHHHhhhhcCCCccccceecCCChHHHHHhhccc-cchhHHH
Q 037142          134 NDEIQAVIEAGVCPRLVKLLGH-------PSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN-HKTSIKN  205 (383)
Q Consensus       134 ~~~~~~~~~~~~i~~l~~~L~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~l~~ll~~~-~~~~~~~  205 (383)
                                +.++.+..++..       .+..++..|+++|+.+....+..        +.+.+.+++.+. .+.++|.
T Consensus       203 ----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~EvRi  264 (336)
T d1lsha1         203 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI  264 (336)
T ss_dssp             ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred             ----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHHHH
Confidence                      356778887754       24679999999999987655422        234555655433 3678888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhh-cCchhHHHHHHHHHHHhcCCCCH
Q 037142          206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ-NAVFYIKKEAAWAISNATFGGTH  262 (383)
Q Consensus       206 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~  262 (383)
                      .|+..+... ..+..         .+..+...+. .++.+|+.-....|.+++...++
T Consensus       265 aA~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         265 RSCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence            888887653 22222         2344555564 46888888888888888876543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.36  Score=39.76  Aligned_cols=140  Identities=13%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-hcCChHHHHHHhhcCchhHHHHHHHHHHHhcCCCC-HHH----HH------H
Q 037142          200 KTSIKNYACWIISNITAGNREQIQAVI-DAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGT-HEQ----IK------Y  267 (383)
Q Consensus       200 ~~~~~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~----~~------~  267 (383)
                      +......+++++..+.... .....++ ....+..+...+.++.+.+|..|...|..+|.... +..    ..      .
T Consensus        69 d~~~e~e~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccH-HHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            3556778899998887654 5555655 67789999999999999999999999998885421 111    11      2


Q ss_pred             HHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 037142          268 LEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEK  346 (383)
Q Consensus       268 l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~  346 (383)
                      .-+.+-+.++++.++.. +.+.+..++..+..++...+..+       ..-.++.-|..+|..+.+..+-+..++++...
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~-------~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH-------HHHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            22346778888888765 56777777777777776554332       23456777889999999999988888876544


Q ss_pred             H
Q 037142          347 S  347 (383)
Q Consensus       347 a  347 (383)
                      .
T Consensus       221 i  221 (343)
T d2bnxa1         221 L  221 (343)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=1.6  Score=35.64  Aligned_cols=131  Identities=11%  Similarity=0.034  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHH-HHhCcHHHHHHhcCCCChhhHHHHHHHHhhhhcCCC--ccccc----------
Q 037142          115 EHVMSNACWGLSLLCDGGKNDEIQAV-IEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY--SQTLY----------  181 (383)
Q Consensus       115 ~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~i~~l~~~L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~----------  181 (383)
                      ......++.|+..+...  ......+ ...+.+..++..|.++++.++..++..|..+|...+  .....          
T Consensus        70 ~~~e~e~l~CLkalmn~--~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNN--KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHTSS--HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc--HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            56788899999999976  4444444 445788999999999999999999999998884322  21111          


Q ss_pred             eecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHH--H----HHHHHhcCChHHHHHHhh-cCchhHHHH
Q 037142          182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNRE--Q----IQAVIDAGLIGPLVNLLQ-NAVFYIKKE  248 (383)
Q Consensus       182 l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~--~----~~~~~~~~~l~~L~~ll~-~~~~~v~~~  248 (383)
                      .-+.+-+..++..+....+.+++..++..+..+..+.++  .    +..+...|+.+. +.-+. ..++.+..+
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELREIENEDMKVQ  220 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTCCCHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHH-HHHHHccCChHHHHH
Confidence            122345667777776664677888888888777765432  2    233334555544 44444 345444443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.77  Score=32.24  Aligned_cols=73  Identities=8%  Similarity=-0.053  Sum_probs=60.1

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~  303 (383)
                      +..+..-+.++++.+...|...|-.+..++++.....+.+.+++..|..++..      .+..|+..++..+..-....
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            44566667888999999999999999999988988888888999999998863      45688888888887766544

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.42  Score=33.58  Aligned_cols=74  Identities=8%  Similarity=-0.149  Sum_probs=60.6

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhch
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVGE  304 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~~  304 (383)
                      +..+..-+.++++.++..|...+-.+..++++.....+.+.+++..|+.++..      .++.|+..++..+........
T Consensus        40 ~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            44566667888999999999999999999888888888888899999999863      467899999988887776543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.51  E-value=0.38  Score=33.93  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH-DNYEIHEKSAKIL  351 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l  351 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+...++++.|..+... ++..|++++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~------------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH------------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4556667778899999999999999999886643            55556666777888777654 5778999999999


Q ss_pred             HHhcCCCCCC
Q 037142          352 ETYWCGRVVG  361 (383)
Q Consensus       352 ~~~~~~~~~~  361 (383)
                      ..+...-..+
T Consensus       111 ~~W~~~f~~~  120 (145)
T d1dvpa1         111 QTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHTTTC
T ss_pred             HHHHHHhCCC
Confidence            9876654433

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.21  Score=40.86  Aligned_cols=192  Identities=13%  Similarity=0.013  Sum_probs=100.1

Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHhcCCCChhHHHHHHHHHHhhcCC
Q 037142           11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGG   90 (383)
Q Consensus        11 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~~~~~~a~~~L~~l~~~   90 (383)
                      +..++...+..|+.++.++|+.-|......|..+-+.....|..+. ..+...+.+++..+....-...++++++.+..+
T Consensus       127 ~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir-~~i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         127 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            3334444567888889999999999999999988776667777554 333456677764444444566677777777765


Q ss_pred             CCCC-ChhhhhchhHHHHHhhccCC-HHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCCCChhhHHHHHHHH
Q 037142           91 KPRP-IFDQVRPCLPTLAQLVHSND-EHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTV  168 (383)
Q Consensus        91 ~~~~-~~~~~~~~i~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~v~~~a~~~L  168 (383)
                      -..+ ......-....++.+.+.+. .....+...++...... ++.....     ++..+++.--..++.=...-+.-|
T Consensus       206 f~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~k-Dp~l~~~-----~i~~llk~WP~t~~~Kev~FL~el  279 (343)
T d2jaka1         206 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL  279 (343)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhc-CchhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence            4222 22222333344444544333 22333444444444443 2222222     223333333333333333334444


Q ss_pred             hhhhcCCCcc-ccceecCCChHHHHHhhccccchhHHHHHHHHH
Q 037142          169 GNIARGDYSQ-TLYIINCGALPYLLGLLIDNHKTSIKNYACWII  211 (383)
Q Consensus       169 ~~l~~~~~~~-~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l  211 (383)
                      ..+...-+.. .+. +...+...+..+++++ +-.|.+.|+...
T Consensus       280 ~~il~~~~~~~f~~-~~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         280 EEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHHTCCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHH-HHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            4444322211 111 1113445555666666 777777766544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.26  E-value=0.59  Score=32.88  Aligned_cols=75  Identities=3%  Similarity=-0.090  Sum_probs=58.8

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhchh
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLCP-DPQIVTVCLKALENILKVGEA  305 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~l~~l~~~~~~  305 (383)
                      +..|..-+.++++.++..|..+|-.+..+++......+.+.+++..|..+++.. +..|+..++..+.........
T Consensus        44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            445666778899999999999999999887767777766777888888887654 668898898888877765443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.65  Score=32.55  Aligned_cols=75  Identities=12%  Similarity=0.079  Sum_probs=58.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR------HDNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~------~~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..+..++..++.            .+...+....+++.|..+..      ..+..|+++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~------------~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            455566667889999999999999999987653            36666777888888988875      357789999


Q ss_pred             HHHHHHHhcCCCC
Q 037142          347 SAKILETYWCGRV  359 (383)
Q Consensus       347 a~~~l~~~~~~~~  359 (383)
                      +..++..+.....
T Consensus       107 il~li~~Wa~~f~  119 (143)
T d1mhqa_         107 VIEILFSWTVWFP  119 (143)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999987765543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=1.1  Score=31.42  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQR------HDNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~------~~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..|..++..++.            .+...+.+.++++.|..+..      ..+..|+++
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~------------~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~k  113 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK------------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  113 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCH------------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhH------------HHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            456677777889999999999999999986543            46677888888999998875      356789999


Q ss_pred             HHHHHHHhcCCC
Q 037142          347 SAKILETYWCGR  358 (383)
Q Consensus       347 a~~~l~~~~~~~  358 (383)
                      +..++..+....
T Consensus       114 il~li~~W~~~f  125 (145)
T d1ujka_         114 ILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHC
Confidence            999998876543

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=1.6  Score=30.77  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhchhcccCcCCCCcccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 037142          273 CIKPLCDLLLCPDPQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRH------DNYEIHEK  346 (383)
Q Consensus       273 ~i~~L~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~------~~~~v~~~  346 (383)
                      .+..|..-+.++++.++..|+..|..++..++..            +...+....+++.|..+...      .+..|+++
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~k  107 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  107 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHH
Confidence            4556666677889999999999999999887643            66667777888888888764      36789999


Q ss_pred             HHHHHHHhcCCC
Q 037142          347 SAKILETYWCGR  358 (383)
Q Consensus       347 a~~~l~~~~~~~  358 (383)
                      +..++..+....
T Consensus       108 il~ll~~Wa~~f  119 (151)
T d1juqa_         108 VIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHc
Confidence            999998876654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.96  Score=31.98  Aligned_cols=73  Identities=8%  Similarity=-0.022  Sum_probs=57.6

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhc
Q 037142          231 IGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKPLCDLLLC------PDPQIVTVCLKALENILKVG  303 (383)
Q Consensus       231 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~l~~l~~~~  303 (383)
                      +..+..-+.++++.+...|..+|-.+..+++......+.+..++..|..++..      .++.|+..++..+..-....
T Consensus        41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            34556667788889999999999999998877777887778889999998864      35678888888887776543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=5.2  Score=32.32  Aligned_cols=186  Identities=11%  Similarity=-0.005  Sum_probs=103.2

Q ss_pred             hchhHHHHHhhccCCHHHHHHHHHHHHHhccCCCchHHHHHHHhCcHHHHHHhcCC-CChhhHHHHHHHHhhhhcCCCcc
Q 037142          100 RPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGH-PSQSVLTQALHTVGNIARGDYSQ  178 (383)
Q Consensus       100 ~~~i~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~l~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~  178 (383)
                      ...+..|+.++.+.|+.-|......+..+-.. .......+.+ .+...+.+++.. ....-...++..++.+..+-..-
T Consensus       132 ~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~k-f~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~p  209 (343)
T d2jaka1         132 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGK-FLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALP  209 (343)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh-hhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCC
Confidence            55778888888999999999999988888755 3333333333 366677777754 45556777888888887653311


Q ss_pred             ccceecCCChHHHHHhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHhcCChHHHHHHhhc---CchhHHHHHHHHHHH
Q 037142          179 TLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN---AVFYIKKEAAWAISN  255 (383)
Q Consensus       179 ~~~l~~~~~i~~l~~ll~~~~~~~~~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~  255 (383)
                      .+.--..=....++.+.+...-...-..-..++......++.....+        +..++++   .+..-...-..-|..
T Consensus       210 lkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~--------i~~llk~WP~t~~~Kev~FL~el~~  281 (343)
T d2jaka1         210 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV--------VMALLKYWPKTHSPKEVMFLNELEE  281 (343)
T ss_dssp             CCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH--------HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH--------HHHHHHhCCCCCchHHHHHHHHHHH
Confidence            00000001234445555544222223333334443433333322222        2223333   222222233444555


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 037142          256 ATFGGTHEQIKYLEREGCIKPLCDLLLCPDPQIVTVCLKAL  296 (383)
Q Consensus       256 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~l  296 (383)
                      +....++...+.+.. .+...+.+++.+++.+|.+.|+...
T Consensus       282 il~~~~~~~f~~~~~-~lf~~la~ci~S~h~qVAErAl~~w  321 (343)
T d2jaka1         282 ILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW  321 (343)
T ss_dssp             HHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred             HHHhCCHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            555555666655432 3677788888899999988877543