Citrus Sinensis ID: 037159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccccHHHHHHHHcHHcHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHcccccccccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHcccHHHEEEccHHHHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcHcccEEEEEcccccHHHHHHHHccccccEEEEccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccHHHHHHHccHHHccc
Coil and Loop (DISEMBL)
mtsqgsnsrnwqNMHYDILVKIFMALRVTDLIFAVSKVCSswraasrdpvlWETLDLNVLLCNafdilpsnsnglsdghsSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVyaatrfpmvkhlalppcneitvdGFRSAIQWWKGLESltvpfisnASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEalnishcllgqipqfpgpllaIEQLDNFILGKASRLREFFTCqvqscsicqfeydddnifgwyeydkglwrddeirslaf
Flexible Loop (DISEMBL)
mtsqgsnsrnwqNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEydkglwrdDEIRSLAF
Low Complexity Region (SEG)
MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF
Disordered region (IsUnstruct)
**********WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDD*******
Disordered Region (DISOPRED)
************NMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLA*
Disordered Region (DISEMBL)
*********NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF
Disordered Region (DISPRO)
********RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9M2Z5	309	F-box/LRR-repeat protein	yes	no	0.960	0.954	0.377	9e-52
Q9T0C6	333	Putative F-box protein At	no	no	0.967	0.891	0.270	2e-21
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.671	0.458	0.246	2e-10
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.677	0.845	0.219	7e-10
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.644	0.655	0.238	2e-09
Q9M0U7	309	Putative F-box protein At	no	no	0.664	0.660	0.234	4e-07
Q9M0U8	304	Putative F-box/LRR-repeat	no	no	0.664	0.671	0.237	5e-05
Q96IG2	436	F-box/LRR-repeat protein	no	no	0.472	0.332	0.264	0.0001
Q58DG6	436	F-box/LRR-repeat protein	yes	no	0.472	0.332	0.264	0.0001
Q9CZV8	436	F-box/LRR-repeat protein	yes	no	0.472	0.332	0.264	0.0001

>sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1

 Score =  204 bits (518), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 4/299 (1%)

Query: 9   RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
           R W+ +  DILV+IF    V +L   ++ VC  WRAA  DP+LW+T+DL+ +  ++F  +
Sbjct: 11  RRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMR-SSFIKI 69

Query: 69  PSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKH 128
           P       +  S       IL  +  LS  + + LIF+++++L D+ L Y A R P ++ 
Sbjct: 70  PLEPYVYVERRSD-EALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERCPGLRR 128

Query: 129 LALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDL 188
           + LP  N I   G   AI+ WK LESLT+P I+N   ++  I  NCKNF  LK+M  F++
Sbjct: 129 VVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEV 188

Query: 189 DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQF-PGPLL 247
            FA +L   +P +K LS+R S + + AL  IL  + SLE LNISH  L +   + P   +
Sbjct: 189 FFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQPQQKV 248

Query: 248 AIEQLDNFILGKASRLREFFTC-QVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSL 305
            + +LD  I+ K +RL++F TC   ++C +CQ   +D+ I  WY+Y++G W+ DE+ SL
Sbjct: 249 IVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDEVSSL 307

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0C6|FB230_ARATH Putative F-box protein At4g11580 OS=Arabidopsis thaliana GN=At4g11580 PE=4 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 43/340 (12%)

Query: 1   MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
           + S       W +++ DIL  IF  L V D+    S+VC SW  AS +  LW T+DL  L
Sbjct: 4   VESTSGEVSEWADLNKDILELIFNKLDVMDITMGASRVCISWFLASHNKTLWNTVDLTNL 63

Query: 61  ----LCNAFDILPS------------NSNGLSDGHSSWLNA--------------MHILN 90
               +   F+                + +GL++  +  ++               M++L 
Sbjct: 64  QELDVSRIFNFKDKERPIFFYKHPVDHKHGLTNLLTKIISRFFLDFFEVEGSISLMNLLV 123

Query: 91  NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK 150
             S LS    K L FN++ Y+++  L +AA + P ++ LALP          R A   WK
Sbjct: 124 EISKLSRMAPKNLFFNFNSYIQENGLKFAAEKMPNIEKLALPIWCYQNEKSLRFAFSQWK 183

Query: 151 GLESLTVPFISNASSI--IQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRS 208
            L++L +    + S     + +G +C N + LK +   +   +  +   +  LK LSLR 
Sbjct: 184 NLKTLIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLHSLKRLSLRC 243

Query: 209 SIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKAS-RLREFF 267
            +V   A+   +T + +L  LN+SHC   + P +   L   + +DN+++  A+ +L +F 
Sbjct: 244 FLVSSIAVYRFITGLPNLTILNVSHC---KNP-YDYFLPIAKSIDNYVITAATQKLEKFI 299

Query: 268 TCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF 307
           TC    C IC+     D       Y   +WR+DEI+ L F
Sbjct: 300 TCP-HDCMICK-----DRCRYSLSYLAEVWRNDEIKELEF 333

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 95/239 (39%), Gaps = 33/239 (13%)

Query: 9   RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL---NVLLCNAF 65
           RNW  +   +   I + L   +++    KVC  W    +DP +W  +D+   N      +
Sbjct: 179 RNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKY 238

Query: 66  DILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPM 125
           D+     + +   H   +                          Y  ++ ++Y A R   
Sbjct: 239 DLESMCRHAVDRSHGGLIE--------------------IEIWYYGTNDLIMYIADRSSN 278

Query: 126 VKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLK---- 181
           +K L L  C  IT +G   A+     LE L V +   +   ++ IG +C N   LK    
Sbjct: 279 LKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNRA 338

Query: 182 --VMFS---FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235
             +MFS   FD D A ++  S+PEL+ L L  + +    LN IL     LE L++  C 
Sbjct: 339 PEIMFSNSGFD-DNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCF 396

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 29/237 (12%)

Query: 9   RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
           RNW  +  ++   I + L   +++    +VC SWR   +DP +W  +D+ +         
Sbjct: 19  RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRI--------- 69

Query: 69  PSNSNGLSDGHSSWLNAMHILNNASILSCKTVK-----RLIFNYSIYLKDEHLVYAATRF 123
                       + +N++ +      L C+ V       L  N    +    L Y A R 
Sbjct: 70  ----------KENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRS 119

Query: 124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN-ASSIIQVIGANCKNFSMLKV 182
             ++ L +  C  +   G   A      LE L + + S+     ++V+G +C N   LK+
Sbjct: 120 SNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKL 179

Query: 183 MFSFDL----DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235
             + D+      A+++  ++P L+ L L  + + +  LN IL     L+ L +  CL
Sbjct: 180 NCTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCL 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 45/243 (18%)

Query: 8   SRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL------- 60
           S NW  +  ++   I   L   +++    KVC SWR   +DP +W  +D++ L       
Sbjct: 16  STNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMD 75

Query: 61  -----LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEH 115
                +C     +  +  GL D    +   + +LN                         
Sbjct: 76  YNLEIMCRH--AVDRSQGGLVDIGIWYFGTVDLLN------------------------- 108

Query: 116 LVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK 175
             Y A R   ++ L L  C++IT DGF  A+     LE L + + S +   ++V+G  C 
Sbjct: 109 --YIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCSFSVESLRVVGQCCL 165

Query: 176 NFSMLKVMF---SFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNIS 232
           N   LK+       + D A+++  ++P+L+ L L  + +    LN IL    +LE L++ 
Sbjct: 166 NMKTLKLNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLR 225

Query: 233 HCL 235
            C 
Sbjct: 226 RCF 228

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U7|FB221_ARATH Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=4 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 39/243 (16%)

Query: 10  NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILP 69
           NW ++  ++   I + L VTD++    K+C +WR   +DP +W  ++L   L   FD   
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCLMYEFDF-- 96

Query: 70  SNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHL 129
                      S    +  L+   +L          N   ++ D  L Y   R   +K L
Sbjct: 97  ----------ESMCRHIVDLSQGGLLE--------INIEHFVSDSLLSYIVDRSCNLKSL 138

Query: 130 ALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKV-----MF 184
            +     +T  G  + I+    LE+L + F S+    ++ IG  C     LK+       
Sbjct: 139 GISIYEPMTNKGVMNGIEKLPLLETLVI-FHSSIKLDLKAIGHACPQLKTLKLNSLGSEL 197

Query: 185 SFDL------------DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA-LNI 231
           + D+            D A+++  S+P+L+ L L  + +    LN IL     LE  L++
Sbjct: 198 AHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDV 257

Query: 232 SHC 234
             C
Sbjct: 258 RKC 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=4 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 44/248 (17%)

Query: 9   RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
           RNW ++  ++   I + L +TD++    KVC  WR   +DP +W  ++    L   FD +
Sbjct: 44  RNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFDFV 103

Query: 69  PSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKH 128
                       S    +  L+   +L     +        +L D  L Y   R   ++ 
Sbjct: 104 ------------SMCRHIVDLSQGGLLEINVDEH-------FLSDSLLSYITDRN--LRS 142

Query: 129 LALPPC-NEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKV----- 182
           L L  C   +T  G  +AI     LE+L V   S     ++ IG  C     LK+     
Sbjct: 143 LGLGMCFPRVTKLGVVNAIAKIPLLETLEVTH-SCIKLDLKAIGHACPQLKTLKLNSLGR 201

Query: 183 ---------------MFSFDL-DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSL 226
                          M   +  D A+++  S+P+L  L L ++ +    LN IL     L
Sbjct: 202 LWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHL 261

Query: 227 EALNISHC 234
           E L++  C
Sbjct: 262 EHLDVRKC 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 91  NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK 150
            A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +   
Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247

Query: 151 GLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSL 206
            L+SL     SN + +I+  +G NC    +L+V       D+ F  +L  +  EL+ + L
Sbjct: 248 KLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFT-TLARNCHELEKMDL 306

Query: 207 RSSIVDKNALNLILTL-MGSLEALNISHCLL 236
              +   ++  + L++    L+ L++SHC L
Sbjct: 307 EECVQITDSTLIQLSIHCPRLQVLSLSHCEL 337

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 91  NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK 150
            A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +   
Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247

Query: 151 GLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSL 206
            L+SL     SN + +I+  +G NC    +L+V       D+ F  +L  +  EL+ + L
Sbjct: 248 KLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFT-TLARNCHELEKMDL 306

Query: 207 RSSIVDKNALNLILTL-MGSLEALNISHCLL 236
              +   ++  + L++    L+ L++SHC L
Sbjct: 307 EECVQITDSTLIQLSIHCPRLQVLSLSHCEL 337

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 91  NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK 150
            A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +   
Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCH 247

Query: 151 GLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSL 206
            L+SL     SN + +I+  +G NC    +L+V       D+ F  +L  +  EL+ + L
Sbjct: 248 KLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFT-TLARNCHELEKMDL 306

Query: 207 RSSIVDKNALNLILTL-MGSLEALNISHCLL 236
              +   ++  + L++    L+ L++SHC L
Sbjct: 307 EECVQITDSTLIQLSIHCPRLQVLSLSHCEL 337

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
255539483	316	conserved hypothetical protein [Ricinus	0.993	0.965	0.452	7e-67
356575953	305	PREDICTED: F-box/LRR-repeat protein At3g	0.993	1.0	0.436	4e-62
356535883	304	PREDICTED: F-box/LRR-repeat protein At3g	0.967	0.976	0.444	4e-62
224122416	291	predicted protein [Populus trichocarpa]	0.947	1.0	0.452	8e-62
224134733	291	predicted protein [Populus trichocarpa]	0.947	1.0	0.438	2e-60
388512841	305	unknown [Medicago truncatula]	0.993	1.0	0.423	3e-59
217074224	305	unknown [Medicago truncatula]	0.993	1.0	0.416	3e-58
357140792	401	PREDICTED: F-box/LRR-repeat protein At3g	0.957	0.733	0.442	1e-57
255537381	315	conserved hypothetical protein [Ricinus	0.954	0.930	0.471	4e-57
226505430	348	uncharacterized protein LOC100273810 [Ze	0.957	0.844	0.432	4e-57

>gi|255539483|ref|XP_002510806.1| conserved hypothetical protein [Ricinus communis] gi|223549921|gb|EEF51408.1| conserved hypothetical protein [Ricinus communis]

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 192/307 (62%), Gaps = 2/307 (0%)

Query: 1   MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
           M    S  R W+++  DILVKIF +  +  L   ++ VCSSWR A  DP+LW+TLDL++L
Sbjct: 12  MEEGDSLVRRWEDLDTDILVKIFQSFDIFQLTSGIAHVCSSWRLACCDPLLWKTLDLSML 71

Query: 61  LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
             N F  +P       DG S       +L  +  LS   +  LIF++++Y+ DE L Y A
Sbjct: 72  KSN-FIKIPLEPYVYVDGRSD-KTLTRVLKISLNLSQGNITSLIFHFNLYVSDEQLTYTA 129

Query: 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSML 180
            R P ++ L LP  N I   G   AI+ W+ LESLT+P I+N   +I+ I  NC+NFS L
Sbjct: 130 ERCPRLRRLVLPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLIEEIANNCRNFSEL 189

Query: 181 KVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240
           K+M  F++ FA +L   +P+L+VLSLR S++ K+AL LIL  + SLE LNISHCLL ++P
Sbjct: 190 KIMGPFEIFFASTLAAYLPKLRVLSLRCSMLIKDALILILDSLQSLEVLNISHCLLIEVP 249

Query: 241 QFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDD 300
             P P   I +LD+ IL KASRLREF TC  +SC +CQ    D+ +  WY+Y++GLW+ D
Sbjct: 250 APPAPKRIIRELDHTILEKASRLREFLTCMDESCIMCQRTKSDEGLMRWYKYEEGLWKTD 309

Query: 301 EIRSLAF 307
           E+RSLA 
Sbjct: 310 EVRSLAL 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575953|ref|XP_003556100.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/307 (43%), Positives = 188/307 (61%), Gaps = 2/307 (0%)

Query: 1   MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
           M    S  R W+++  DILVKIF  L + +L   +S+VCS+WR A  DP+LW+TLDL++L
Sbjct: 1   MEDNDSYIRRWEDLDIDILVKIFQLLDIFELTSGISRVCSAWRMACCDPLLWKTLDLSML 60

Query: 61  LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
             N F  +P       DG S       IL  +  LS +++  LIF++++Y+ DE L Y A
Sbjct: 61  RSN-FIKIPLEPFVYVDGRSD-RTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTA 118

Query: 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSML 180
            R P ++ L LP  N I   G   AI+ WK LESLT+P I+N   I++ I  +CKNFS L
Sbjct: 119 ERCPQLRRLVLPAWNRIKKPGMCKAIRGWKELESLTMPSIANPPYILEEISTHCKNFSEL 178

Query: 181 KVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240
           K+M   D+ FA SL   +P+L++LSLR S++ K+ L LIL  +  LE LNISHC+L +  
Sbjct: 179 KIMGPCDIFFASSLAAFLPKLRILSLRCSMLYKDVLILILDNLQHLEVLNISHCVLMEAL 238

Query: 241 QFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDD 300
             P     I+++D  I  KASRLREF TC   SC +CQ    D+ +  WY+Y++GLW+ D
Sbjct: 239 PAPQQKRIIKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTD 298

Query: 301 EIRSLAF 307
           E+RSL+ 
Sbjct: 299 EVRSLSL 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535883|ref|XP_003536472.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Glycine max]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/299 (44%), Positives = 186/299 (62%), Gaps = 2/299 (0%)

Query: 9   RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
           R W+++  DILVKIF  L + +L   +S+VCS+WR A  DP+LW+TLDL++L  N F  +
Sbjct: 8   RRWEDLDIDILVKIFQLLDIFELTSGISRVCSAWRLACCDPLLWKTLDLSMLRSN-FIKI 66

Query: 69  PSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKH 128
           P       DG S       IL  +  LS +++  LIF++++Y+ DE L Y A R P ++ 
Sbjct: 67  PLEPFVYVDGRSD-RTLTRILKISLSLSQQSIMTLIFHFNLYVSDEQLTYTAERCPQLRR 125

Query: 129 LALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDL 188
           L LP  N I   G   AI+ WK LESLT+P I+N   I++ I  +CKNFS LK+M   D+
Sbjct: 126 LVLPAWNRIKKPGMCKAIRGWKELESLTMPCIANPPYILEEISTHCKNFSELKIMGPCDI 185

Query: 189 DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLA 248
            FA SL   +P+L+VLSLR S++ K+ L LIL  +  LE LNISHC+L +    P     
Sbjct: 186 FFASSLAAFLPKLRVLSLRCSMLYKDVLILILDSLQHLEVLNISHCVLMEALPAPQQKRI 245

Query: 249 IEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF 307
           I+++D  I  KASRLREF TC   SC +CQ    D+ +  WY+Y++GLW+ DE+RSL+ 
Sbjct: 246 IKEIDVTIRQKASRLREFLTCMEDSCVMCQRTRTDEGLIRWYKYEEGLWKTDEVRSLSL 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122416|ref|XP_002318828.1| predicted protein [Populus trichocarpa] gi|222859501|gb|EEE97048.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 133/294 (45%), Positives = 181/294 (61%), Gaps = 3/294 (1%)

Query: 14  MHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSN 73
           M  DILVKIF +L V +L   ++ VCS+WR A+ DP LW+TLDL++L  N F  +P    
Sbjct: 1   MDIDILVKIFQSLTVFELTSGIAHVCSAWRLAACDPWLWKTLDLSMLESN-FIKIPLEPY 59

Query: 74  GLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPP 133
               GHS       IL  +  LS   +  L F++++Y+ ++HL Y A R P ++ L LP 
Sbjct: 60  VYVHGHSD-KTLTRILKISLSLSRGNITSLFFHFNLYVSEDHLTYTAQRCPRLRRLVLPA 118

Query: 134 CNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMS 193
            N +     + AI  WK LESLT+P I N+  ++Q I  NC+NF  LK+M  FD+ FA S
Sbjct: 119 WNRVETVMIK-AIDLWKDLESLTMPSIVNSPRLVQAIATNCRNFRELKIMGPFDIYFASS 177

Query: 194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLD 253
           L   +P LKVLSLR S + K+ L  IL  +  L+ LNISHCLL QIP  P P   + +LD
Sbjct: 178 LATYLPTLKVLSLRCSKLYKDTLIFILDNLRCLDVLNISHCLLIQIPPPPAPGRIVRRLD 237

Query: 254 NFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF 307
             IL KASRLR+F TC   +C +CQ   +D+ +  WY+Y+KGLW++DE+RSLA 
Sbjct: 238 KTILEKASRLRKFLTCMRDTCIMCQRTRNDEGLMRWYKYEKGLWKEDEVRSLAL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134733|ref|XP_002321893.1| predicted protein [Populus trichocarpa] gi|222868889|gb|EEF06020.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 3/294 (1%)

Query: 14  MHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSN 73
           M  DILVKIF +L V +L   ++ VCSSWR A+ DP LW TLDL++L  N F  +P    
Sbjct: 1   MDIDILVKIFQSLTVFELTSGIAHVCSSWRLAACDPFLWRTLDLSMLKSN-FIKIPLEPY 59

Query: 74  GLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPP 133
               GHS        L  +  LS   +  L F++++Y+ ++HL Y A R P +K L LP 
Sbjct: 60  VYVHGHSD-KTLTRFLKISLSLSRGNITSLFFHFNLYVSEDHLTYTAQRCPRLKRLVLPA 118

Query: 134 CNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMS 193
            N +     + AI+ WK LESLT+P I N+  ++Q I  NC+ FS LK+M  FD+ FA S
Sbjct: 119 WNRVETVMIK-AIELWKDLESLTMPSIVNSPRLVQAIATNCRKFSELKIMGPFDIYFASS 177

Query: 194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLD 253
           L   +P LKVLSLR S++ K+ L  +L  +  LE LNISHCLL ++P  P P   + QLD
Sbjct: 178 LVTYLPTLKVLSLRCSMLYKDTLIFVLDNLCCLEVLNISHCLLIEVPPPPAPRRIVRQLD 237

Query: 254 NFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF 307
             IL KAS L +F  C   +C +CQ   +D+ +  WY+YD+GLW++DE+ SLA 
Sbjct: 238 KTILEKASHLHDFLACMSDTCIMCQKTRNDEGLMRWYKYDEGLWKEDEVSSLAL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512841|gb|AFK44482.1| unknown [Medicago truncatula]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 184/307 (59%), Gaps = 2/307 (0%)

Query: 1   MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
           M    SN+R W+++  DILVKIF  L + +L   ++ VCS+WR A  DP+LW+TLDL++L
Sbjct: 1   MEDVVSNTRRWEDLDTDILVKIFQLLDIFELTSGIAHVCSAWRMACCDPLLWKTLDLSML 60

Query: 61  LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
             N F  +P       D  S       +L  +  LS  ++  LIF++++Y+ D+ L Y A
Sbjct: 61  RSN-FIKIPLEPFVYVDERSD-KKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTA 118

Query: 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSML 180
            R P +K L LP  N I   G   AI+ WK LESLT+P I+N    ++ I  NCKNFS L
Sbjct: 119 ERCPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSEL 178

Query: 181 KVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240
           K+M   D+ FA +L   +P+L+ LSLR S + ++ L LIL  +  LE LNISHC+L +  
Sbjct: 179 KIMGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVLNISHCILMECL 238

Query: 241 QFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDD 300
             P     I ++D+ I  KASRLREF TC   SC +CQ    D+ I  WY+Y++G W++D
Sbjct: 239 PPPQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKED 298

Query: 301 EIRSLAF 307
           E++SLA 
Sbjct: 299 EVKSLAL 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074224|gb|ACJ85472.1| unknown [Medicago truncatula]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 182/307 (59%), Gaps = 2/307 (0%)

Query: 1   MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
           M    SN+R W+++  DILVKIF  L + +L   ++ VCS+WR    DP+LW+TLDL++L
Sbjct: 1   MEDVVSNTRRWEDLDTDILVKIFQLLDIFELTSGIAHVCSAWRMTCCDPLLWKTLDLSML 60

Query: 61  LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
             N F  +P       D  S       +L  +  LS  ++  LIF++++Y+ D+ L Y A
Sbjct: 61  RSN-FIKIPLEPFVYVDERSD-KKLTRLLKISLNLSRMSIVTLIFHFNLYVSDDQLTYTA 118

Query: 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSML 180
            R P +K L LP  N I   G   AI+ WK LESLT+P I+N    ++ I  NCKNFS L
Sbjct: 119 ERCPHLKRLVLPAWNRIKRTGMCKAIRCWKELESLTMPSIANPPYFLEEIATNCKNFSEL 178

Query: 181 KVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP 240
           K+M   D+ FA +L   +P+L+ LSLR S + ++ L LIL  +  LE  NISHC+L +  
Sbjct: 179 KIMGPCDIFFASTLAAFVPKLRFLSLRCSTLYRDVLILILDSLEHLEVFNISHCILMECL 238

Query: 241 QFPGPLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDD 300
             P     I ++D+ I  KASRLREF TC   SC +CQ    D+ I  WY+Y++G W++D
Sbjct: 239 PPPQHKKIINEIDSTIRQKASRLREFITCMDDSCIMCQRTRTDEGIVRWYKYEEGFWKED 298

Query: 301 EIRSLAF 307
           E++SLA 
Sbjct: 299 EVKSLAL 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140792|ref|XP_003571947.1| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Brachypodium distachyon]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 172/298 (57%), Gaps = 4/298 (1%)

Query: 8   SRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDI 67
            + W++M  D+LVKIF  L + +L   VS+VC  WR A  DP++W TLD  +L  N    
Sbjct: 88  GKRWEDMDTDVLVKIFKELNLVEL-SPVSQVCRLWRMACADPLIWGTLDFGLLKSNFIQT 146

Query: 68  LPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVK 127
             S    + +     L    IL  A  +S   V  +IF+Y++Y+KDEHL Y + RFP +K
Sbjct: 147 RASPYIWVDERSDKRL--AKILRLAVAISLGNVNCMIFHYNLYMKDEHLQYISQRFPHIK 204

Query: 128 HLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFD 187
            L +P  N IT  G   AIQ W+ LESLT+P I +   I++ +   CKNF  LKVM SFD
Sbjct: 205 RLVMPAWNRITKMGICLAIQRWERLESLTMPTIGHPPYIMEELSRRCKNFKELKVMGSFD 264

Query: 188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLL 247
             FA+++   +P+LKVLSLR S V  +AL  +LT M  LE LNISHCLL +I    G   
Sbjct: 265 HTFALAVSTYLPKLKVLSLRCSKVRMDALQCVLTSMEHLEVLNISHCLLFEIAAN-GRRQ 323

Query: 248 AIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSL 305
            I +LD+  L  ASRLREF  CQ + C  CQ    DD I  WY Y+   WR DE+ SL
Sbjct: 324 VIHELDDKTLESASRLREFHHCQSRQCVACQRMLQDDGILRWYRYEDWFWRRDEVSSL 381

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537381|ref|XP_002509757.1| conserved hypothetical protein [Ricinus communis] gi|223549656|gb|EEF51144.1| conserved hypothetical protein [Ricinus communis]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/312 (47%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 8   SRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDI 67
           SRNW NM+YDIL+KIF  +   DLI +VS VC  WRAA   P  W TLDL  L C A D 
Sbjct: 9   SRNWANMNYDILIKIFTMVSTADLISSVSFVCPLWRAACFHPSFWHTLDLARLKCYA-DK 67

Query: 68  LPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRF---- 123
                  L +  SS L  M ILN+A ILS   + RLIF++  Y+KD HL  AA R+    
Sbjct: 68  PQDLRASLDNRPSSRL--MQILNSAFILSGHNITRLIFDFQAYIKDSHLTLAAERYGLLV 125

Query: 124 -------PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN 176
                  P +K L LP  N+I+V+GF +AIQ    LESLT+P      SI+Q IG NC  
Sbjct: 126 YFTAERCPRLKQLVLPAWNQISVNGFCAAIQKLTELESLTLPCNYFPHSILQTIGVNCTK 185

Query: 177 FSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL 236
            S LKVM  FD DFA +LF+ +P+LKVLSLR SIV K+AL L L L   L+ LNISH LL
Sbjct: 186 LSELKVMSPFDHDFANTLFIYLPKLKVLSLRCSIVHKDALRLTLMLFDDLKVLNISHSLL 245

Query: 237 GQIPQFPG--PLLAIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDK 294
             +  FP   P       D  I  +ASRL+ F  CQ   C +CQ    D     W EY+ 
Sbjct: 246 VDL--FPSEIPTTFKWDHDTSITEQASRLKTFLWCQNSYCIMCQRVLYDAGHPNWQEYE- 302

Query: 295 GLWRDDEIRSLA 306
           GLW +DE+ S A
Sbjct: 303 GLWCEDEVSSFA 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226505430|ref|NP_001141683.1| uncharacterized protein LOC100273810 [Zea mays] gi|194705538|gb|ACF86853.1| unknown [Zea mays] gi|414870842|tpg|DAA49399.1| TPA: hypothetical protein ZEAMMB73_662744 [Zea mays] gi|414870843|tpg|DAA49400.1| TPA: hypothetical protein ZEAMMB73_662744 [Zea mays]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/298 (43%), Positives = 175/298 (58%), Gaps = 4/298 (1%)

Query: 8   SRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDI 67
            + W++M  D+LVKIF  L + +L   VS+VC  WR A  DP++W TLD  +L  N    
Sbjct: 35  GKRWEDMDTDVLVKIFKELNLVEL-SPVSQVCRLWRLACSDPLIWGTLDFGLLKSNFIQT 93

Query: 68  LPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVK 127
             S    + D     L    IL  A  +SC  V  +IF+Y++++KDEHL + + R P +K
Sbjct: 94  RASPYIWVDDRSDRRL--ARILRVAMAISCGNVNCMIFHYNLFMKDEHLHFISERSPHLK 151

Query: 128 HLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFD 187
            L +P  N IT  G  +AIQ W+ LESLT+P I +   I++ I  +CKNF+ LK+M SFD
Sbjct: 152 RLVMPAWNRITKVGICNAIQRWQALESLTMPTIGHPPYIMEEIARSCKNFTELKIMGSFD 211

Query: 188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLL 247
             FA ++   +P+LKVLSLR S V  +AL  +L  M  LE LNISHCLL  +    G   
Sbjct: 212 QQFASAILQFLPKLKVLSLRCSKVSMDALQCLLNSMEYLEVLNISHCLLLVVAA-NGRKQ 270

Query: 248 AIEQLDNFILGKASRLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSL 305
            + +LD+ IL +ASRLREF  CQ + C  CQ    D+ I  WY Y+   WR DE+RSL
Sbjct: 271 VVHELDSQILERASRLREFHYCQSRLCVACQRMVVDEGIMRWYRYEDWFWRRDEVRSL 328

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2099443	309	AT3G48880 "AT3G48880" [Arabido	0.957	0.951	0.38	5.8e-50
TAIR|locus:2139697	333	AT4G11580 [Arabidopsis thalian	0.697	0.642	0.292	5.9e-29
TAIR|locus:2115979	307	AT4G05490 "AT4G05490" [Arabido	0.166	0.166	0.352	4.6e-07
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.693	0.865	0.219	6.4e-07
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.547	0.56	0.262	0.00024
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.631	0.444	0.263	0.00028
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.631	0.444	0.263	0.00028
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.631	0.444	0.263	0.00028
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.394	0.55	0.284	0.00093

TAIR|locus:2099443 AT3G48880 "AT3G48880" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/300 (38%), Positives = 176/300 (58%)

Query:     9 RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
             R W+ +  DILV+IF    V +L   ++ VC  WRAA  DP+LW+T+DL+ +  ++F  +
Sbjct:    11 RRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMR-SSFIKI 69

Query:    69 PSNSNGLSDGHSSWLNAM-HILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVK 127
             P       +  S    A+  IL  +  LS  + + LIF+++++L D+ L Y A R P ++
Sbjct:    70 PLEPYVYVERRSD--EALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERCPGLR 127

Query:   128 HLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFD 187
              + LP  N I   G   AI+ WK LESLT+P I+N   ++  I  NCKNF  LK+M  F+
Sbjct:   128 RVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFE 187

Query:   188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQF-PGPL 246
             + FA +L   +P +K LS+R S + + AL  IL  + SLE LNISH  L +   + P   
Sbjct:   188 VFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQPQQK 247

Query:   247 LAIEQLDNFILGKASRLREFFTCQV-QSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSL 305
             + + +LD  I+ K +RL++F TC   ++C +CQ   +D+ I  WY+Y++G W+ DE+ SL
Sbjct:   248 VIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDEVSSL 307

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139697 AT4G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 67/229 (29%), Positives = 112/229 (48%)

Query:    83 LNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPP-CNEITVDG 141
             ++ M++L   S LS    K L FN++ Y+++  L +AA + P ++ LALP  C +     
Sbjct:   116 ISLMNLLVEISKLSRMAPKNLFFNFNSYIQENGLKFAAEKMPNIEKLALPIWCYQ-NEKS 174

Query:   142 FRSAIQWWKGLESLTVPFISNASSII--QVIGANCKNFSMLKVMFSFDLDFAMSLFMSIP 199
              R A   WK L++L +    + S     + +G +C N + LK +   +   +  +   + 
Sbjct:   175 LRFAFSQWKNLKTLIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLH 234

Query:   200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGK 259
              LK LSLR  +V   A+   +T + +L  LN+SHC       F   L   + +DN+++  
Sbjct:   235 SLKRLSLRCFLVSSIAVYRFITGLPNLTILNVSHCK-NPYDYF---LPIAKSIDNYVITA 290

Query:   260 AS-RLREFFTCQVQSCSICQFEYDDDNIFGWYEYDKGLWRDDEIRSLAF 307
             A+ +L +F TC    C IC+     D       Y   +WR+DEI+ L F
Sbjct:   291 ATQKLEKFITCP-HDCMICK-----DRCRYSLSYLAEVWRNDEIKELEF 333

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2115979 AT4G05490 "AT4G05490" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query:    10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
             NW  +  D+L  I + L   +++    KVC SWR  S+DP++W  +D+  L
Sbjct:    26 NWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNL 76

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 51/232 (21%), Positives = 96/232 (41%)

Query:     9 RNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDIL 68
             RNW  +  ++   I + L   +++    +VC SWR   +DP +W  +D+ +         
Sbjct:    19 RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRI--------- 69

Query:    69 PSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKH 128
                   L +    +     +   A  LS   +  +  +Y +      L Y A R   ++ 
Sbjct:    70 ---KENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLV--NTSFLNYIADRSSNLRR 124

Query:   129 LALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA-SSIIQVIGANCKNFSMLKVMFSFD 187
             L +  C  +   G   A      LE L + + S+     ++V+G +C N   LK+  + D
Sbjct:   125 LGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGD 184

Query:   188 LD----FAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235
             +      A+++  ++P L+ L L  + + +  LN IL     L+ L +  CL
Sbjct:   185 VKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCL 236

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
 Identities = 48/183 (26%), Positives = 77/183 (42%)

Query:     1 MTSQGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL 60
             M   GS+   W  +  +IL+ I   L + +L      V  SW    RDP LW   DL   
Sbjct:     1 MEEDGSD---WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPW 57

Query:    61 LCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
                 FD  P +++  S      ++ M  L +    S   + ++   +     D  L YAA
Sbjct:    58 ----FDSYPESTHLWSPEFEQKVDLM--LRSVVDWSEGGLTKIRVRHC---SDHALSYAA 108

Query:   121 TRFPMVKHLALPPCNEITVDGFRSAIQW-WKGLESLTVPFISNAS-SIIQVIGANCKNFS 178
              R P ++ LA+     +T D   + I +  + L+ L + +    S   + +IG NC N  
Sbjct:   109 DRCPNLQVLAIRSSPNVT-DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLR 167

Query:   179 MLK 181
             +LK
Sbjct:   168 ILK 170

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
 Identities = 54/205 (26%), Positives = 86/205 (41%)

Query:    92 ASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG 151
             A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +    
Sbjct:   189 ALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHK 248

Query:   152 LESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFSFDL-DFAMS-LFMSIPELKVLSLRS 208
             L+SL     SN + +I+  +G NC    +L+V     L D   + L  +  EL+ + L  
Sbjct:   249 LQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEE 308

Query:   209 --SIVDKNALNLILTLMGSLEALNISHCLL---GQIPQFPGPLLAIEQLDNFILGKASRL 263
                I D   + L +     L+ L++SHC L     I        A +QL+   L     +
Sbjct:   309 CVQITDSTLIQLSIHCP-RLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLI 367

Query:   264 REFFTCQVQSC-SICQFE-YDDDNI 286
              +     ++SC S+ + E YD   I
Sbjct:   368 TDASLEHLKSCHSLERIELYDCQQI 392

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
 Identities = 54/205 (26%), Positives = 86/205 (41%)

Query:    92 ASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG 151
             A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +    
Sbjct:   189 ALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHK 248

Query:   152 LESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFSFDL-DFAMS-LFMSIPELKVLSLRS 208
             L+SL     SN + +I+  +G NC    +L+V     L D   + L  +  EL+ + L  
Sbjct:   249 LQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEE 308

Query:   209 --SIVDKNALNLILTLMGSLEALNISHCLL---GQIPQFPGPLLAIEQLDNFILGKASRL 263
                I D   + L +     L+ L++SHC L     I        A +QL+   L     +
Sbjct:   309 CVQITDSTLIQLSIHCP-RLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLI 367

Query:   264 REFFTCQVQSC-SICQFE-YDDDNI 286
              +     ++SC S+ + E YD   I
Sbjct:   368 TDASLEHLKSCHSLERIELYDCQQI 392

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
 Identities = 54/205 (26%), Positives = 86/205 (41%)

Query:    92 ASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG 151
             A +  C  +K L       L+DE L Y     P +  L L  C +IT +G  +  +    
Sbjct:   189 ALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHK 248

Query:   152 LESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFSFDL-DFAMS-LFMSIPELKVLSLRS 208
             L+SL     SN + +I+  +G NC    +L+V     L D   + L  +  EL+ + L  
Sbjct:   249 LQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEE 308

Query:   209 --SIVDKNALNLILTLMGSLEALNISHCLL---GQIPQFPGPLLAIEQLDNFILGKASRL 263
                I D   + L +     L+ L++SHC L     I        A +QL+   L     +
Sbjct:   309 CVQITDSTLIQLSIHCP-RLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLI 367

Query:   264 REFFTCQVQSC-SICQFE-YDDDNI 286
              +     ++SC S+ + E YD   I
Sbjct:   368 TDASLEHLKSCHSLERIELYDCQQI 392

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00093, P = 0.00093
 Identities = 37/130 (28%), Positives = 57/130 (43%)

Query:   113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGA 172
             D  L Y A R   ++HL L  C++IT  G  +       LE L + +       ++ IG 
Sbjct:    51 DSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMKLPLLEDLELSYCLIKGKNLEAIGF 110

Query:   173 NCKNFSMLKVM--------FSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG 224
              C +   LK+         F++D D A+ +   +PEL+ L L  + V    LN I     
Sbjct:   111 ACLHLKTLKLNCQGFKFPGFTYDHD-ALGIAKRMPELRCLQLFGNRVSDVGLNAIFDGCP 169

Query:   225 SLEALNISHC 234
              LE L++  C
Sbjct:   170 HLEHLDLRQC 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      307       307    0.0010  115 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  245 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.44u 0.09s 24.53t   Elapsed:  00:00:02
  Total cpu time:  24.44u 0.09s 24.53t   Elapsed:  00:00:02
  Start:  Sat May 11 01:37:09 2013   End:  Sat May 11 01:37:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2Z5	FBL53_ARATH	No assigned EC number	0.3779	0.9609	0.9546	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001171 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-06

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 17 DILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLN 58
          +IL++IF  L   DL+  ++ VC  WR  + D  LW  L L 
Sbjct: 7  EILLQIFSYLDPRDLL-RLALVCRRWRELASDDSLWRRLCLR 47

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG4341	483	consensus F-box protein containing LRR [General fu	99.91
KOG4341	483	consensus F-box protein containing LRR [General fu	99.66
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.09
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.98
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.86
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.88
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.41
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.37
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.26
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.23
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.13
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.89
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.33
PLN03150	623	hypothetical protein; Provisional	96.26
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.6
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.35
PLN03150	623	hypothetical protein; Provisional	94.8
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	92.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	92.09
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	92.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	91.79
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	91.29
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.14
PF13013	109	F-box-like_2: F-box-like domain	91.02
KOG4308	478	consensus LRR-containing protein [Function unknown	91.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	90.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	90.67
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.33
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.26
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	88.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	87.89
KOG4308	478	consensus LRR-containing protein [Function unknown	87.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	87.49
PRK15386	426	type III secretion protein GogB; Provisional	86.12
KOG0617	264	consensus Ras suppressor protein (contains leucine	85.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	84.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	84.31
KOG0472	565	consensus Leucine-rich repeat protein [Function un	84.27
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	84.17
KOG2502	355	consensus Tub family proteins [General function pr	81.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	80.65

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.6e-28  Score=202.12  Aligned_cols=231  Identities=19%  Similarity=0.244  Sum_probs=172.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccc--cc--------------cccc
Q 037159            4 QGSNSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLL--CN--------------AFDI   67 (307)
Q Consensus         4 ~~~~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~--~~--------------~~~~   67 (307)
                      ...++.+|+.|||||+..||+.|..+++++ ++.|||+|++++++.++|...|+..-.  +.              ....
T Consensus        91 ~~npgv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~  169 (419)
T KOG2120|consen   91 ENNPGVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARS  169 (419)
T ss_pred             ccCCCCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchh
Confidence            344667799999999999999999999999 999999999999999999999976431  00              0000


Q ss_pred             cCCCCC-c--cccCC--CCHHHHH-----HHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCC
Q 037159           68 LPSNSN-G--LSDGH--SSWLNAM-----HILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEI  137 (307)
Q Consensus        68 ~~~~~~-~--~~~~~--~~~~~l~-----~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~  137 (307)
                      ..+.+. +  +.+-+  ....++.     .---..+-..|..++.+.+++ ..++|.....||++ .+|+.|+|++|.++
T Consensus       170 ~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  170 FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGF  247 (419)
T ss_pred             hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeecccccccc
Confidence            001110 0  00000  0000000     000011223466778887776 56688888888875 89999999999999


Q ss_pred             CHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHH-hcCCCCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCC-CC
Q 037159          138 TVDGFRSAIQWWKGLESLTVPFISNASSIIQVIG-ANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSI-VD  212 (307)
Q Consensus       138 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~-~~c~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it  212 (307)
                      +..++..++..|..|.+|+|++|..+.+.+..+. .-.++|+.|+++|+   +.+..+..++..||+|.+|+|+.|. ++
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            9999999999999999999999987555454443 34589999999987   5567788888999999999999998 88


Q ss_pred             HHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          213 KNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       213 ~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      + +....+..++.|++|.++.|+.+.
T Consensus       328 ~-~~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  328 N-DCFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             c-hHHHHHHhcchheeeehhhhcCCC
Confidence            8 555666779999999999999886

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.91  E-value=9.3e-25  Score=190.63  Aligned_cols=207  Identities=20%  Similarity=0.287  Sum_probs=137.1

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccccccccccCCCCCccccCCCCHHHHHHHH
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHIL   89 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   89 (307)
                      +|. ||+|++..||++|+...+.+ +++||+.|...+.|...|++||+...+....     ++               .+
T Consensus        72 ~~~-LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-----g~---------------VV  129 (483)
T KOG4341|consen   72 SRS-LPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-----GG---------------VV  129 (483)
T ss_pred             ccc-CCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchhcCC-----Cc---------------ce
Confidence            354 99999999999999999999 9999999999999999999999876521110     00               01


Q ss_pred             HHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHH
Q 037159           90 NNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQ  168 (307)
Q Consensus        90 ~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~  168 (307)
                      ...+++.++.++++.+.++..+.++.+...+..|||+++|.+.+|..+|+..+..+...|++|++|++..|. +++..++
T Consensus       130 ~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  130 ENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             ehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence            122334445555555555555555555555555555555555555555555555555555555555555543 3555555


Q ss_pred             HHHhcCCCCceEEee--------------------------cc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHH
Q 037159          169 VIGANCKNFSMLKVM--------------------------FS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLI  219 (307)
Q Consensus       169 ~i~~~c~~L~~L~l~--------------------------~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l  219 (307)
                      .+++.|++|+.|+++                          +|  .+++.+..++..++.+..+++..|. +||+++..+
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence            555555555555554                          33  2344445555667777777777777 888888888


Q ss_pred             HHcCCCCcEEeccCCcCCC
Q 037159          220 LTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       220 ~~~~~~L~~L~l~~C~~i~  238 (307)
                      ..+|..|+.|+.++|..++
T Consensus       290 ~~~c~~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDIT  308 (483)
T ss_pred             hhhhhHhhhhcccCCCCCc
Confidence            8888888888888888877

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.66  E-value=2.6e-17  Score=144.32  Aligned_cols=208  Identities=19%  Similarity=0.203  Sum_probs=151.6

Q ss_pred             cCChHHHhhHHhhhhHHHHHhcCCC-CcceeeecCccccccccccCCCCCccccCCCCHHHHHHHHHHHHHhcCCCccEE
Q 037159           25 ALRVTDLIFAVSKVCSSWRAASRDP-VLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRL  103 (307)
Q Consensus        25 ~L~~~d~~~~~s~VCk~Wr~~~~~p-~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~~l~~L  103 (307)
                      +++...... ++.+|+.|+.+...+ ..|..+.+......+.+. ..-...|.+..+.+ .+.     +..+.+..++.+
T Consensus       176 ~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL-~~lNlSwc~qi~~~-gv~-----~~~rG~~~l~~~  247 (483)
T KOG4341|consen  176 KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL-KYLNLSWCPQISGN-GVQ-----ALQRGCKELEKL  247 (483)
T ss_pred             eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH-HHhhhccCchhhcC-cch-----HHhccchhhhhh
Confidence            566666666 999999999999887 788777655332223322 10111122111110 111     222333345555


Q ss_pred             EeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCCCCceEEe
Q 037159          104 IFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCKNFSMLKV  182 (307)
Q Consensus       104 ~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~~L~~L~l  182 (307)
                      ...+|....++.+..++.+++-+.++++..|..+||.++..+...|..|+.|+.++|. +++.++.+++++|++|+.|-+
T Consensus       248 ~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l  327 (483)
T KOG4341|consen  248 SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLEL  327 (483)
T ss_pred             hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEec
Confidence            5566777788888888888888888888888888888888888888888888888875 588888888888888888888


Q ss_pred             ecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159          183 MFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIP  240 (307)
Q Consensus       183 ~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~  240 (307)
                      .++  +++..+..++.+++.|+.|++.++. +++..+..+..+||.|+.|.+++|..+|+.
T Consensus       328 ~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  328 SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence            777  7788888888888888888888888 777778888888888888888888888855

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.45  E-value=3.2e-14  Score=89.41  Aligned_cols=46  Identities=37%  Similarity=0.657  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159           11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL   57 (307)
Q Consensus        11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l   57 (307)
                      |..||+||+.+||+||+..|+.+ +++|||+|++++.++.+|+++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence            78999999999999999999999 99999999999988999998764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.29  E-value=7.6e-12  Score=117.51  Aligned_cols=138  Identities=20%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCC-CCCCCHH--HHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHh
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPP-CNEITVD--GFRSAIQWWKGLESLTVPFIS-NASSIIQVIGA  172 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~-~~~~~~~--~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~  172 (307)
                      +..++.+.+..+..+++..+..++..+++|+.|++++ +...+..  ........|++|++|+++++. +++.++..++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555666666556666666666666666666666665 2222222  233345556666666666665 56666666666


Q ss_pred             cCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159          173 NCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       173 ~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .|++|+.|.+..+  +++.++..++..+|+|++|+|++|. +++.++..++.+||+|+.|.+..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            6666666665444  3566666666666666666666666 666666666666666555544333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.28  E-value=1.9e-11  Score=114.83  Aligned_cols=150  Identities=23%  Similarity=0.247  Sum_probs=124.0

Q ss_pred             CCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCC-C---CCHHHHHHHHhcCCCCceEEeec
Q 037159          109 IYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFI-S---NASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       109 ~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~---~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      ...+...+..+...+|+|+.|.+.+|..+++.++..++..+++|++|+++++ .   ........++..|++|+.|+++.
T Consensus       173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            3456677777887899999999999999999999999999999999999973 2   23444556888899999999977


Q ss_pred             c--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhhhhHHHHHHhh
Q 037159          185 S--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKAS  261 (307)
Q Consensus       185 ~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~~~~~~~  261 (307)
                      +  ++|..+..++..||+|++|.+.+|. +|++++..++..||+|++|+|++|..++..          .+.. +...++
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----------~l~~-~~~~c~  321 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----------GLEA-LLKNCP  321 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----------HHHH-HHHhCc
Confidence            6  6889999999899999999999999 999999999999999999999999999632          1122 355566


Q ss_pred             cchhhhhc
Q 037159          262 RLREFFTC  269 (307)
Q Consensus       262 ~l~~l~~~  269 (307)
                      +++++...
T Consensus       322 ~l~~l~~~  329 (482)
T KOG1947|consen  322 NLRELKLL  329 (482)
T ss_pred             chhhhhhh
Confidence            66665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.1e-11  Score=101.67  Aligned_cols=141  Identities=14%  Similarity=0.155  Sum_probs=115.5

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcC
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANC  174 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c  174 (307)
                      +..++++++++. ..++...+..+...|..|+.|.|.+. +++|.....++ +-.+|+.|+|+.|. ++..++..+..+|
T Consensus       183 frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  183 FRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhh
Confidence            345677777764 56678888999999999999999865 47776555554 77899999999987 6899999999999


Q ss_pred             CCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          175 KNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI--VDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       175 ~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      ..|.+|+++.|  +.+.....++.--++|+.|+|+|+.  +-+..+..+...||+|.+||+++|..++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence            99999999988  3444333344456899999999997  77778889999999999999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.09  E-value=3.7e-09  Score=94.08  Aligned_cols=138  Identities=19%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CCccEEEeccCCCCCHHHHHHHH---hhC-CCccEEecCCCCCCCHH---HHHHHHhcCCCCCeEEecCCCCCHHHHHHH
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAA---TRF-PMVKHLALPPCNEITVD---GFRSAIQWWKGLESLTVPFISNASSIIQVI  170 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~---~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i  170 (307)
                      .++++++++.+. +++..+..+.   ..+ ++|+.|++++|. ++..   .+...+..++.|++|++++|.+++..+..+
T Consensus       108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  185 (319)
T cd00116         108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL  185 (319)
T ss_pred             CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence            568888887654 4444444433   234 788888888775 5433   244445667788888888888776665555


Q ss_pred             Hhc---CCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHHcC----CCCcEEeccCCcCC
Q 037159          171 GAN---CKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALNLILTLM----GSLEALNISHCLLG  237 (307)
Q Consensus       171 ~~~---c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~~----~~L~~L~l~~C~~i  237 (307)
                      +..   +++|++|+++++ +.+.....+   ...+|+|++|++++|.+++.++..+...+    +.|++|++++|...
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            433   358888888765 444443333   34677888888888888887777777665    68888888888543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.98  E-value=2e-08  Score=89.34  Aligned_cols=141  Identities=19%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             CCCccEEEeccCCCCCH--HHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHH
Q 037159           97 CKTVKRLIFNYSIYLKD--EHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIG  171 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d--~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~  171 (307)
                      ..+++++.+..+.....  ..+......+++|++|+++++. +++.++..+   +..+++|++|++++|.+++.....+.
T Consensus       136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence            36899999988665432  2233334457899999999865 776665554   34567999999999998766655544


Q ss_pred             ---hcCCCCceEEeecc-CCHHHHHHHHhcC----CCCCEEEecCCCCCHHHHHHH---HHcCCCCcEEeccCCcCCC
Q 037159          172 ---ANCKNFSMLKVMFS-FDLDFAMSLFMSI----PELKVLSLRSSIVDKNALNLI---LTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       172 ---~~c~~L~~L~l~~~-~~~~~~~~l~~~~----p~L~~L~L~~~~it~~~l~~l---~~~~~~L~~L~l~~C~~i~  238 (307)
                         ..+++|++|+++++ +.+..+..++..+    +.|++|++.+|.+++.+...+   +..+++|++|+++++..-+
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence               45789999999876 6666666666554    799999999999987776554   4445789999999987654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.86  E-value=2.6e-09  Score=64.73  Aligned_cols=40  Identities=28%  Similarity=0.470  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCccee
Q 037159           14 MHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWET   54 (307)
Q Consensus        14 LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~   54 (307)
                      ||+|++..||.+|+..|+.. ++.|||+|+.++.++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence            79999999999999999998 99999999999988888864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.83  E-value=5e-10  Score=70.57  Aligned_cols=43  Identities=30%  Similarity=0.552  Sum_probs=36.3

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcce
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWE   53 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~   53 (307)
                      .|.+||+|++.+||++|+..|++. +++|||+|++++.++.+|.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccH
Confidence            367899999999999999999998 9999999999998777765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5.6e-09  Score=92.98  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             HHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHh
Q 037159          118 YAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFM  196 (307)
Q Consensus       118 ~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~  196 (307)
                      ..++.||+++.|+|+..-......+..++.++|+|+.|+|+.+.+....-.......+.|+.|.+++| +.-..+..++.
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            45566777777777766544566677777777777777777765311100111113466777777666 55666666666


Q ss_pred             cCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159          197 SIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQIP  240 (307)
Q Consensus       197 ~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~~  240 (307)
                      .+|+|+.|.|.+|. +.......  .....|+.|||++...++..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             hCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccc
Confidence            77777777777773 22222111  12345667777777776643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.54  E-value=1.7e-07  Score=91.13  Aligned_cols=148  Identities=16%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             HHHHHHHHHH-hcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC
Q 037159           85 AMHILNNASI-LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA  163 (307)
Q Consensus        85 l~~~l~~~~~-~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  163 (307)
                      +..+++..+. .++.+|++|++++...++......++..+|+|++|.+.+-. +..+.|..+...+|+|..||+|++.++
T Consensus       108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCcc
Confidence            3344444332 45678999999998888999999999999999999998755 555568899999999999999998764


Q ss_pred             HH-----------------------HHHHHHhcCCCCceEEeeccCC--HH-HHH---HHHhcCCCCCEEEecCCCCCHH
Q 037159          164 SS-----------------------IIQVIGANCKNFSMLKVMFSFD--LD-FAM---SLFMSIPELKVLSLRSSIVDKN  214 (307)
Q Consensus       164 ~~-----------------------~l~~i~~~c~~L~~L~l~~~~~--~~-~~~---~l~~~~p~L~~L~L~~~~it~~  214 (307)
                      +-                       .+..+. ..++|+.|+++....  +. .+.   +....+|+||.|+.+|+.++.+
T Consensus       187 nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  187 NLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             CcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            32                       111221 235555555554311  11 111   1122456666666666666666


Q ss_pred             HHHHHHHcCCCCcEEeccCC
Q 037159          215 ALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       215 ~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .+..++..-|+|+.+.+-+|
T Consensus       266 ~le~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  266 ILEELLNSHPNLQQIAALDC  285 (699)
T ss_pred             HHHHHHHhCccHhhhhhhhh
Confidence            66666666666665554433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=2.2e-06  Score=74.68  Aligned_cols=141  Identities=15%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             CCCccEEEeccCCCCCH--HHHHHHHhhCCCccEEecCCCCCCCHHH------------HHHHHhcCCCCCeEEecCCCC
Q 037159           97 CKTVKRLIFNYSIYLKD--EHLVYAATRFPMVKHLALPPCNEITVDG------------FRSAIQWWKGLESLTVPFISN  162 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d--~~l~~i~~~~~~L~~L~L~~~~~~~~~~------------l~~~~~~~~~L~~L~L~~~~~  162 (307)
                      +++++.++|+.+-+-.+  +.+..+...|..|++|.|.+|. +...+            ....+..-|.|+.+..+.|.+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            34788888876544332  4455556668888888888775 43322            111223445666666666654


Q ss_pred             C---HHHHHHHHhcCCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHH---HHHHcCCCCcEEecc
Q 037159          163 A---SSIIQVIGANCKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALN---LILTLMGSLEALNIS  232 (307)
Q Consensus       163 ~---~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~---~l~~~~~~L~~L~l~  232 (307)
                      .   ...+....+.+|.|+.+++... +..+++..+   ..+||+|+.|+|..|.+|.++=.   ..+...|+|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            2   2333334455566666666433 222222111   24566666666666666555432   233344566666666


Q ss_pred             CCcCCC
Q 037159          233 HCLLGQ  238 (307)
Q Consensus       233 ~C~~i~  238 (307)
                      +|-.-+
T Consensus       250 dcll~~  255 (382)
T KOG1909|consen  250 DCLLEN  255 (382)
T ss_pred             cccccc
Confidence            665443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.36  E-value=4.1e-06  Score=73.04  Aligned_cols=119  Identities=19%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             HHHHhhCCCccEEecCCCCCCCHHH---HHHHHhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-CCHH
Q 037159          117 VYAATRFPMVKHLALPPCNEITVDG---FRSAIQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS-FDLD  189 (307)
Q Consensus       117 ~~i~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~-~~~~  189 (307)
                      ..+.+.+|.|+.+.++... +..++   +...+.+||+|+.|||..|.++..+-..++.   ..|+|+.|+++.| ..+.
T Consensus       178 A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~  256 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE  256 (382)
T ss_pred             HHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence            3334445666666665332 33222   2233455666666666666554444333332   2345566666555 2222


Q ss_pred             H----HHHHHhcCCCCCEEEecCCCCCHHHHHHHHHc---CCCCcEEeccCCcC
Q 037159          190 F----AMSLFMSIPELKVLSLRSSIVDKNALNLILTL---MGSLEALNISHCLL  236 (307)
Q Consensus       190 ~----~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~---~~~L~~L~l~~C~~  236 (307)
                      +    +.++.+..|+|+.|.+.+|.||.++...+...   -|.|+.|+|++|..
T Consensus       257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2    22333445666666666666665554433222   36666666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.2e-07  Score=84.73  Aligned_cols=137  Identities=13%  Similarity=0.066  Sum_probs=82.3

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCC--CHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhc
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEI--TVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGAN  173 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~  173 (307)
                      .+.+++.|+++.+-+..=..+..+++..|+|+.|+|+...-.  .+..   ....++.|+.|.|+.|.++-..+..+...
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            456777777776655566677788888899998888754311  1111   11156778888888888877777777788


Q ss_pred             CCCCceEEeeccC---CHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          174 CKNFSMLKVMFSF---DLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       174 c~~L~~L~l~~~~---~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ||+|+.|.+.+.-   ......   +.+..|+.|+|++|.+-+.........+|.|+.|+++.|..-+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             CCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence            8888888886541   000011   1234566666666653333323334445666666665555433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.27  E-value=1.5e-07  Score=75.87  Aligned_cols=129  Identities=17%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      ++++|++.++.--.   +..+...+.+|+.|+|+++.-.+-++    +..++.|+.|++++|.++.-. ..+...||+|+
T Consensus        20 ~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred             cccccccccccccc---ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence            34556665432211   23334446788999998765222222    345788999999988874321 23334678999


Q ss_pred             eEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHHH--HHHHHHcCCCCcEEeccCCcC
Q 037159          179 MLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKNA--LNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       179 ~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +|.+++. +.+ ..+..+ ..+|+|++|+|.+|.+++..  =..++..+|+|+.||-.....
T Consensus        92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             EEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence            9998765 211 123333 36899999999998876443  235667789999988755544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.17  E-value=4.9e-07  Score=72.95  Aligned_cols=129  Identities=14%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      +-+++.|+|.++. ++.  +..+...+.+|+.|++++|.+..  +..+ ..+++|++|.++.. +..-. ..+...+|+|
T Consensus        18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            4568999999764 432  33333467899999999998743  2222 23589999999765 22211 1233468999


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhhhhHHHHHHhhcchhhhh
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFFT  268 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  268 (307)
                      ++|.|++|.|.+-.-..-+..||+|+.|++.+.+.....   .+       ...++...+.|+.+-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~Y-------R~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NY-------RLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---TH-------HHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hH-------HHHHHHHcChhheeCC
Confidence            999999999776433344567999999999998875432   11       3567777766665433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=3.5e-06  Score=82.16  Aligned_cols=63  Identities=13%  Similarity=0.031  Sum_probs=53.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS  185 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~  185 (307)
                      -.+|++|++++...++..-...+...+|.|++|.+++-.+..+-+..+..++|||..|++++.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T  183 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT  183 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence            368999999987767666677888899999999999988766668888899999999999865

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=1.5e-05  Score=64.65  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             CCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcE
Q 037159          152 LESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEA  228 (307)
Q Consensus       152 L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~  228 (307)
                      ++.++-+++.+...+++.+. .++.|+.|.+..|  ++|..+..+..-.|+|+.|+|++|. ||+.|+..+. .+++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence            56677777777778888774 4688888888666  7788888887778899999999998 9999987654 4889999


Q ss_pred             EeccCCcCCC
Q 037159          229 LNISHCLLGQ  238 (307)
Q Consensus       229 L~l~~C~~i~  238 (307)
                      |.|.+-..+.
T Consensus       181 L~l~~l~~v~  190 (221)
T KOG3864|consen  181 LHLYDLPYVA  190 (221)
T ss_pred             HHhcCchhhh
Confidence            9888776665

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.84  E-value=8.6e-06  Score=69.95  Aligned_cols=49  Identities=31%  Similarity=0.510  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHhc-----CChHHHhhHHhhhhHHHHHhcCCCCcceeeecCcc
Q 037159           11 WQNMHYDILVKIFMA-----LRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVL   60 (307)
Q Consensus        11 w~~LP~eiL~~If~~-----L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~   60 (307)
                      ++.||+|||..||..     ++.+++.. ++.|||.|+..+++|.+|+..-+..+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW  160 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVW  160 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHH
Confidence            567999999999976     67788988 99999999999999999997766555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.71  E-value=4.9e-05  Score=77.97  Aligned_cols=12  Identities=33%  Similarity=0.326  Sum_probs=5.8

Q ss_pred             CCCccEEecCCC
Q 037159          123 FPMVKHLALPPC  134 (307)
Q Consensus       123 ~~~L~~L~L~~~  134 (307)
                      +++|+.|+|+++
T Consensus       163 l~~L~~L~L~~n  174 (968)
T PLN00113        163 FSSLKVLDLGGN  174 (968)
T ss_pred             CCCCCEEECccC
Confidence            445555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.71  E-value=4.7e-05  Score=78.11  Aligned_cols=108  Identities=15%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|++|+|+++. ++. .+...+..+++|++|+|++|.+.......++ .+++|+.|+++++ ........+ ..+++|
T Consensus       139 l~~L~~L~Ls~n~-~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L  214 (968)
T PLN00113        139 IPNLETLDLSNNM-LSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPREL-GQMKSL  214 (968)
T ss_pred             cCCCCEEECcCCc-ccc-cCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHH-cCcCCc
Confidence            4566666666543 221 1223345677777777777664332222232 3466666666544 111111112 244555


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      ++|+|++|.++.. +..-+..+++|++|++++|.
T Consensus       215 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        215 KWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             cEEECcCCccCCc-CChhHhcCCCCCEEECcCce
Confidence            5555555544321 11122344555555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.63  E-value=0.0015  Score=55.73  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=28.9

Q ss_pred             HhhCCCccEEecCCCCC--CCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159          120 ATRFPMVKHLALPPCNE--ITVDGFRSAIQWWKGLESLTVPFISN  162 (307)
Q Consensus       120 ~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~  162 (307)
                      ...||+|+..+|+....  -....+..++++-..|++|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            34688888888875431  12345666777778888888887764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.58  E-value=3.6e-05  Score=71.68  Aligned_cols=111  Identities=18%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             hCCCccEEecCCCC--CCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-----CCHHHHHHH
Q 037159          122 RFPMVKHLALPPCN--EITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-----FDLDFAMSL  194 (307)
Q Consensus       122 ~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-----~~~~~~~~l  194 (307)
                      .|++|+.|+|+...  .+....+.    .+..|++|+|+.+.+..-. +.......+|+.|+|...     +.|  ....
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IED--aa~~  387 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFR----VLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIED--AAVA  387 (873)
T ss_pred             hcccceeEeccccccccCChhHHH----HHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEec--chhh
Confidence            46677777776432  12222222    3456777777766542211 112234478888888543     444  3333


Q ss_pred             HhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcC
Q 037159          195 FMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIP  240 (307)
Q Consensus       195 ~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~  240 (307)
                      ...+|.|+.|.|.||.+..-.- ....++++||+||+.+...-+..
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~k-rAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPK-RAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hccchhhhheeecCceeeecch-hhhccCcccceecCCCCcceeec
Confidence            4569999999999998432221 23467999999999998877654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.57  E-value=3.5e-05  Score=75.15  Aligned_cols=119  Identities=22%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHhhCCCccEEecCCCC--CCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCC
Q 037159          110 YLKDEHLVYAATRFPMVKHLALPPCN--EITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFD  187 (307)
Q Consensus       110 ~~~d~~l~~i~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~  187 (307)
                      .++|..+..+ ..+++||.|+|++..  .+.+.    ...+++.|++|+||++.++.-. ..+ ..|+.|++|...+.--
T Consensus       370 ~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp-~tv-a~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  370 HLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP-DTV-ANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             cccccchhhh-ccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh-HHH-HhhhhhHHHhhcCCce
Confidence            4455555444 357899999999762  24443    3457889999999999764333 233 3468888888755411


Q ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          188 LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       188 ~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .... .++ .+|.|+.++++.|.++.-.+...+.. |+|++||++|.....
T Consensus       443 ~~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  443 LSFP-ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV  490 (1081)
T ss_pred             eech-hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence            1111 333 68999999999999988777665544 899999999988643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.00012  Score=59.55  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=32.8

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCCCCceEEeec
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      ++.|+.|.+.+|..+.|.++..+..-.|+|+.|+|++|. |++.++..+.+. ++|+.|.|..
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-knLr~L~l~~  185 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-KNLRRLHLYD  185 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-hhhHHHHhcC
Confidence            455555555555555555555555555555555555554 455555555432 5555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=8.9e-05  Score=63.75  Aligned_cols=106  Identities=15%  Similarity=-0.000  Sum_probs=52.2

Q ss_pred             EecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEec
Q 037159          129 LALPPCNEITVDGFRSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLR  207 (307)
Q Consensus       129 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~  207 (307)
                      |.+.+|..-+...+..+...+..+++|||.++.+++ ..+.+|.++.|.|+.|++++.--...+..+..-..+|+.|-|.
T Consensus        50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLN  129 (418)
T KOG2982|consen   50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLN  129 (418)
T ss_pred             heecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEc
Confidence            334444322333344445555556666666555532 3444555555666666655431111111111123366666666


Q ss_pred             CCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          208 SSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       208 ~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      |.+++.......+...|.++.|+++..
T Consensus       130 gT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  130 GTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CCCCChhhhhhhhhcchhhhhhhhccc
Confidence            666666666666666666666655544

>PLN03210 Resistant to P

Probab=97.37  E-value=0.00012  Score=76.35  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELK  202 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~  202 (307)
                      +++|+.|+|+++.....  +...+..+++|+.|+|++|..... +... ..+++|+.|++++|..-..   +....++|+
T Consensus       777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL~~L~Ls~c~~L~~---~p~~~~nL~  849 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET-LPTG-INLESLESLDLSGCSRLRT---FPDISTNIS  849 (1153)
T ss_pred             cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe-eCCC-CCccccCEEECCCCCcccc---ccccccccC
Confidence            35677777776543322  333456778888888887742111 1100 1356777777766522111   111234566


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +|+|.++.++.  +..-+..+++|+.|++++|.+++.
T Consensus       850 ~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        850 DLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             EeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCc
Confidence            66666665542  222234566666666666665553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.31  E-value=0.00022  Score=74.41  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+|+.|.++.+..+..  +..-...+++|+.|++++|..+..  +...+ .+++|+.|++++|....    .+....++|
T Consensus       778 ~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~----~~p~~~~nL  848 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLR----TFPDISTNI  848 (1153)
T ss_pred             ccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccc----ccccccccc
Confidence            3566666655433221  111134589999999999876542  22222 58899999999986311    112223689


Q ss_pred             ceEEeeccCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          178 SMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       178 ~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +.|++++..-......+ ..+++|+.|+|.+|. ++.  +..-...+++|+.|++++|..++.
T Consensus       849 ~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        849 SDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence            99999765211222233 478999999999987 553  333345689999999999988864

syringae 6; Provisional

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.26  E-value=0.0062  Score=52.08  Aligned_cols=145  Identities=15%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             hcCCCccEEEeccCCCCC--HHHHHHHHhhCCCccEEecCCCCCCCHH------HHHHH-----HhcCCCCCeEEecCCC
Q 037159           95 LSCKTVKRLIFNYSIYLK--DEHLVYAATRFPMVKHLALPPCNEITVD------GFRSA-----IQWWKGLESLTVPFIS  161 (307)
Q Consensus        95 ~s~~~l~~L~l~~~~~~~--d~~l~~i~~~~~~L~~L~L~~~~~~~~~------~l~~~-----~~~~~~L~~L~L~~~~  161 (307)
                      .-|++++.++++.+-+-.  .+.+.-...+..+|++|.|.+|.--...      ++..+     +..-|.|+......|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            457899999998765433  2334444445788999999987522211      12222     3456899999999887


Q ss_pred             C---CHHHHHHHHhcCCCCceEEeecc-CCHHHHHHH----HhcCCCCCEEEecCCCCCHHHHHHH---HHcCCCCcEEe
Q 037159          162 N---ASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSL----FMSIPELKVLSLRSSIVDKNALNLI---LTLMGSLEALN  230 (307)
Q Consensus       162 ~---~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l----~~~~p~L~~L~L~~~~it~~~l~~l---~~~~~~L~~L~  230 (307)
                      +   +........+.-.+|+.+++-.. +.++++..+    ..++.+|+.|+|..|.+|-.|-..+   +...+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            5   23333333344369999999554 555544433    3478999999999999887765444   34458899999


Q ss_pred             ccCCcCCCc
Q 037159          231 ISHCLLGQI  239 (307)
Q Consensus       231 l~~C~~i~~  239 (307)
                      +..|-.-+.
T Consensus       249 lnDClls~~  257 (388)
T COG5238         249 LNDCLLSNE  257 (388)
T ss_pred             ccchhhccc
Confidence            999977653

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.23  E-value=0.00027  Score=63.47  Aligned_cols=38  Identities=24%  Similarity=0.516  Sum_probs=34.2

Q ss_pred             CCCCCCCHHHHHHHHhcC-ChHHHhhHHhhhhHHHHHhcC
Q 037159            9 RNWQNMHYDILVKIFMAL-RVTDLIFAVSKVCSSWRAASR   47 (307)
Q Consensus         9 ~~w~~LP~eiL~~If~~L-~~~d~~~~~s~VCk~Wr~~~~   47 (307)
                      .+|++||+|+|..|..+| ...|+++ .+.||+.||.++.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence            369999999999999999 6678888 9999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.16  E-value=0.00024  Score=61.88  Aligned_cols=45  Identities=24%  Similarity=0.421  Sum_probs=41.3

Q ss_pred             CCCCC----HHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159           11 WQNMH----YDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD   56 (307)
Q Consensus        11 w~~LP----~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~   56 (307)
                      .+.||    ++|-..||+||+..+++. |-+|||+|+++..+|.+|+++-
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLi  123 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLI  123 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHH
Confidence            34689    999999999999999998 9999999999999999998764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00015  Score=61.73  Aligned_cols=15  Identities=20%  Similarity=0.089  Sum_probs=7.1

Q ss_pred             hcCCCCCeEEecCCC
Q 037159          147 QWWKGLESLTVPFIS  161 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~  161 (307)
                      .++|.|+.|.|+-|.
T Consensus        38 ~kMp~lEVLsLSvNk   52 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNK   52 (388)
T ss_pred             HhcccceeEEeeccc
Confidence            344445555554443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.92  E-value=0.001  Score=35.55  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=12.5

Q ss_pred             CCCCCEEEecCCC-CCHHHHHHHH
Q 037159          198 IPELKVLSLRSSI-VDKNALNLIL  220 (307)
Q Consensus       198 ~p~L~~L~L~~~~-it~~~l~~l~  220 (307)
                      ||+|++|+|++|. |||.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            3555555555555 5555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.89  E-value=0.001  Score=40.64  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          199 PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       199 p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+|++|++++|.|++  +...+.++++|+.|+++++..-+
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence            589999999999885  44546789999999999996544

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.85  E-value=0.0016  Score=34.84  Aligned_cols=24  Identities=29%  Similarity=0.617  Sum_probs=18.0

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHH
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAI  146 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~  146 (307)
                      ||+|++|+|++|..++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            577788888888778887777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00034  Score=59.02  Aligned_cols=109  Identities=16%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC-CHHHHHHHHhcCCCCceEEeecc-CCH-HHHHHHHhcCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN-ASSIIQVIGANCKNFSMLKVMFS-FDL-DFAMSLFMSIPE  200 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~c~~L~~L~l~~~-~~~-~~~~~l~~~~p~  200 (307)
                      .+|+.|++.++...|-.+    +..+|+|+.|.++.++. ....+..++..||+|++|++++. +.+ ..+.. .+.+++
T Consensus        43 ~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n  117 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN  117 (260)
T ss_pred             cchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence            445555555444333222    23567888888887743 34556666666777777777655 221 11222 235667


Q ss_pred             CCEEEecCCCCCH---HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDK---NALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~---~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |..|++..|.++.   .. ..+..-+|+|++||-..+....
T Consensus       118 L~~Ldl~n~~~~~l~dyr-e~vf~ll~~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYR-EKVFLLLPSLKYLDGCDVDGEE  157 (260)
T ss_pred             hhhhhcccCCccccccHH-HHHHHHhhhhccccccccCCcc
Confidence            7777777776442   21 2344446777777765555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.001  Score=56.19  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             CCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhh
Q 037159          174 CKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQ  251 (307)
Q Consensus       174 c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~  251 (307)
                      .|+|+.|.++..  ....++..+++.+|+|++|++++|.+.+-.-..=+...++|..|++..|......   .+      
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~---dy------  134 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD---DY------  134 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc---cH------
Confidence            378999999765  3344555667778999999999999875222223556789999999999876532   00      


Q ss_pred             hhHHHHHHhhcchhhhhcccc
Q 037159          252 LDNFILGKASRLREFFTCQVQ  272 (307)
Q Consensus       252 ~~~~~~~~~~~l~~l~~~~~~  272 (307)
                       .+.+....++|+-+-.|...
T Consensus       135 -re~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  135 -REKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             -HHHHHHHhhhhccccccccC
Confidence             24466666666666666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.62  E-value=0.0015  Score=56.49  Aligned_cols=109  Identities=17%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPE  200 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~  200 (307)
                      +..|.++.|+++... ++.-  .. +..+++|++|||+++.++.-  .-.-....|++.|++++..- +.+..+. .+=+
T Consensus       304 KL~Pkir~L~lS~N~-i~~v--~n-La~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~La~N~i-E~LSGL~-KLYS  375 (490)
T KOG1259|consen  304 KLAPKLRRLILSQNR-IRTV--QN-LAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLKLAQNKI-ETLSGLR-KLYS  375 (490)
T ss_pred             hhccceeEEeccccc-eeee--hh-hhhcccceEeecccchhHhh--hhhHhhhcCEeeeehhhhhH-hhhhhhH-hhhh
Confidence            346888999888654 3321  12 44678899999988765221  12222345788888875411 1222222 3457


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      |..|++++|.|..-.-..-+.++|.|+.|.+.+.+.-
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            8888888888654322233456888888888776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.0019  Score=55.79  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             eccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159          105 FNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       105 l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      ++++..=+...+..++..+..++.++|.+.....++.+..+..++|.|+.|+|+.+.+... +..+..-..+|++|-+++
T Consensus        52 ln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   52 LNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             ecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC
Confidence            3333333445577788888899999998765455678888889999999999988875322 122211235888888877


Q ss_pred             c-CCHHHHHHHHhcCCCCCEEEecCC
Q 037159          185 S-FDLDFAMSLFMSIPELKVLSLRSS  209 (307)
Q Consensus       185 ~-~~~~~~~~l~~~~p~L~~L~L~~~  209 (307)
                      . ..-.........+|.+++|.++.|
T Consensus       131 T~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  131 TGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CCCChhhhhhhhhcchhhhhhhhccc
Confidence            6 222233334446666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.41  E-value=0.00036  Score=65.86  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             CCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          175 KNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       175 ~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      .||..+++++..-......+. .+++|+.|+|++|.||.-.+  -.....+|+.|+++....
T Consensus       222 ~NL~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECLY-KLRNLRRLNLSGNKITELNM--TEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             hhhhhccccccCCCcchHHHh-hhhhhheeccCcCceeeeec--cHHHHhhhhhhccccchh
Confidence            455555555431111122222 56788888888887764222  223345677777766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.41  E-value=0.0001  Score=48.55  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=20.3

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|++|++++|.++.-. ...+.++++|++|++++|.
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            4566666666666543211 1234556666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.33  E-value=0.00016  Score=47.63  Aligned_cols=15  Identities=27%  Similarity=0.527  Sum_probs=9.7

Q ss_pred             hcCCCCCEEEecCCC
Q 037159          196 MSIPELKVLSLRSSI  210 (307)
Q Consensus       196 ~~~p~L~~L~L~~~~  210 (307)
                      ..+|+|++|++++|.
T Consensus        46 ~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   46 SNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTSTTESEEEETSSS
T ss_pred             cCCCCCCEEeCcCCc
Confidence            356677777776664

...

>PLN03150 hypothetical protein; Provisional

Probab=96.26  E-value=0.0055  Score=59.84  Aligned_cols=106  Identities=14%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEE
Q 037159          126 VKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVL  204 (307)
Q Consensus       126 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L  204 (307)
                      ++.|+|+++. ++. .+...+..+++|+.|+|++|.+....-..+ ..+++|+.|+++++ +.......+ ..+++|++|
T Consensus       420 v~~L~L~~n~-L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQG-LRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESL-GQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCC-ccc-cCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEE
Confidence            4555665432 221 122334567777777777776543322233 34577777777655 221112222 267777777


Q ss_pred             EecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          205 SLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       205 ~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      +|++|.++...-..+.....++..+++.++.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCc
Confidence            7777765532222222223455666665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.88  E-value=0.0016  Score=61.07  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHcCCCCcE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKN-ALNLILTLMGSLEA  228 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~-~l~~l~~~~~~L~~  228 (307)
                      +++++|+|+++.+++-....+.. ..+|..|+|+...-..-.....+++|+|+.|+|..|.|... ++.  .+++|.|+.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQN  249 (873)
T ss_pred             CCceEEeeccccccccccccccc-cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhh
Confidence            46677777766665544444432 23666666655411111222334677788887777765432 322  356777777


Q ss_pred             EeccCC
Q 037159          229 LNISHC  234 (307)
Q Consensus       229 L~l~~C  234 (307)
                      |.+...
T Consensus       250 lklqrN  255 (873)
T KOG4194|consen  250 LKLQRN  255 (873)
T ss_pred             hhhhhc
Confidence            766443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.86  E-value=0.007  Score=31.51  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=16.5

Q ss_pred             CCCCCEEEecCCCCCHHHHHHHH
Q 037159          198 IPELKVLSLRSSIVDKNALNLIL  220 (307)
Q Consensus       198 ~p~L~~L~L~~~~it~~~l~~l~  220 (307)
                      +++|++|+|++|.|+++++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47888888888888888887765

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.73  E-value=0.011  Score=35.96  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=24.7

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA  163 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  163 (307)
                      ++|+.|+++++. +++  +...+.++++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCCCCC
Confidence            578888888664 553  4444678888888888888764

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.60  E-value=0.0044  Score=50.60  Aligned_cols=86  Identities=19%  Similarity=0.131  Sum_probs=43.7

Q ss_pred             hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH--HHHHc
Q 037159          147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALN--LILTL  222 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~--~l~~~  222 (307)
                      ..++.|..|.|..+.++.- -..++...|+|++|.+.+.  ..-.++..++ .||+|++|.+-+|.++...=.  .++-.
T Consensus        61 p~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEEe
Confidence            4555666666666654211 1122233466666666443  1112222333 567777777777766654311  23344


Q ss_pred             CCCCcEEeccCC
Q 037159          223 MGSLEALNISHC  234 (307)
Q Consensus       223 ~~~L~~L~l~~C  234 (307)
                      .|+|+.||+.+-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            577777776543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.41  E-value=0.013  Score=30.42  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=13.5

Q ss_pred             CCCCCeEEecCCCCCHHHHHHHH
Q 037159          149 WKGLESLTVPFISNASSIIQVIG  171 (307)
Q Consensus       149 ~~~L~~L~L~~~~~~~~~l~~i~  171 (307)
                      +++|++|+|++|.++++++..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            45677777777777666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.35  E-value=0.02  Score=57.90  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCC--HHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNA--SSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSI  198 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~  198 (307)
                      ...|.|+.|+|++|....  .+...++.+-+|+.|+++++.+.  +.++..+    +.|.+|++...........+...+
T Consensus       568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L----k~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNL----KKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHH----Hhhheeccccccccccccchhhhc
Confidence            357889999998765433  35556667778899999888763  3444433    578888886543222334444468


Q ss_pred             CCCCEEEecCCCCC-HHHHHHHHHcCCCCcEEeccCCc
Q 037159          199 PELKVLSLRSSIVD-KNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       199 p~L~~L~L~~~~it-~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      ++||+|.+.....+ +.....-+..+.+|+.+.+..+.
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence            99999999887622 22333334556666666664443

>PLN03150 hypothetical protein; Provisional

Probab=94.80  E-value=0.026  Score=55.13  Aligned_cols=83  Identities=20%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             CCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEE
Q 037159          151 GLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEAL  229 (307)
Q Consensus       151 ~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L  229 (307)
                      .++.|+|+++.+....-..++ .+++|+.|+|+++ +.......+ ..+++|+.|+|++|.++.. +...+..+++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS-IPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEE
Confidence            377889988876443333444 4699999999876 221222223 4799999999999987643 23345679999999


Q ss_pred             eccCCcC
Q 037159          230 NISHCLL  236 (307)
Q Consensus       230 ~l~~C~~  236 (307)
                      +|+++..
T Consensus       496 ~Ls~N~l  502 (623)
T PLN03150        496 NLNGNSL  502 (623)
T ss_pred             ECcCCcc
Confidence            9998864

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.73  E-value=0.05  Score=29.51  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHcC
Q 037159          199 PELKVLSLRSSIVDKNALNLILTLM  223 (307)
Q Consensus       199 p~L~~L~L~~~~it~~~l~~l~~~~  223 (307)
                      ++|++|+|++|.++++|...+.+.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            6899999999999999998887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.71  E-value=0.0035  Score=60.35  Aligned_cols=105  Identities=16%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHh-cCCCCceEEeeccCCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGA-NCKNFSMLKVMFSFDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~c~~L~~L~l~~~~~~~~~~~l~~~~p~  200 (307)
                      ..|.|++|+|+.. +++.-.   .+..|+.|++|||++|.+..  +..++. .|. |..|++.+.. -..+..+ +++.+
T Consensus       185 ll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~-l~tL~gi-e~Lks  255 (1096)
T KOG1859|consen  185 LLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNA-LTTLRGI-ENLKS  255 (1096)
T ss_pred             HHHHhhhhccchh-hhhhhH---HHHhcccccccccccchhcc--ccccchhhhh-heeeeecccH-HHhhhhH-Hhhhh
Confidence            3577899999854 355432   56688999999999987521  111221 233 8888886541 1123333 36778


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      |+.|++++|-+++..-...+..+..|..|.|.|.+
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            88888888876654433334444556666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.69  E-value=0.012  Score=51.02  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             hcCCCCCeEEecCCCC--CHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037159          147 QWWKGLESLTVPFISN--ASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVD  212 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~--~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it  212 (307)
                      ..+..|++|||+++.+  .++.++.+    |.++.|+++.. +..  +..+ ..+++|.+|+|++|.++
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~----Pkir~L~lS~N~i~~--v~nL-a~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLA----PKLRRLILSQNRIRT--VQNL-AELPQLQLLDLSGNLLA  342 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhc----cceeEEeccccceee--ehhh-hhcccceEeecccchhH
Confidence            4567888888888865  34444433    78888888765 111  1112 26778888888887644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.63  E-value=0.0025  Score=60.35  Aligned_cols=18  Identities=22%  Similarity=0.213  Sum_probs=10.8

Q ss_pred             cCCCCcEEeccCCcCCCc
Q 037159          222 LMGSLEALNISHCLLGQI  239 (307)
Q Consensus       222 ~~~~L~~L~l~~C~~i~~  239 (307)
                      .|+.|+.|.++....||.
T Consensus       337 RC~kL~kL~L~~NrLiTL  354 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHNRLITL  354 (1255)
T ss_pred             hhHHHHHhcccccceeec
Confidence            356666666666666663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=0.012  Score=50.57  Aligned_cols=79  Identities=15%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEAL  229 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L  229 (307)
                      .+.+.|++.+|.++|-.   |.+..|.|+.|.|+-.  .....+-...|.+|++|.|+.|.|.+-.-...+.++|+|+.|
T Consensus        19 ~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvN--kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVN--KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHHH---HHHhcccceeEEeecc--ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            35566666666665543   3344567777776532  111111123566777777777776655545556667777766


Q ss_pred             eccC
Q 037159          230 NISH  233 (307)
Q Consensus       230 ~l~~  233 (307)
                      -|..
T Consensus        94 WL~E   97 (388)
T KOG2123|consen   94 WLDE   97 (388)
T ss_pred             hhcc
Confidence            6644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.43  E-value=0.026  Score=56.03  Aligned_cols=11  Identities=18%  Similarity=0.323  Sum_probs=5.9

Q ss_pred             CCCccEEecCC
Q 037159          123 FPMVKHLALPP  133 (307)
Q Consensus       123 ~~~L~~L~L~~  133 (307)
                      .++|++|+|++
T Consensus       241 p~~Lk~LdLs~  251 (788)
T PRK15387        241 PPELRTLEVSG  251 (788)
T ss_pred             CCCCcEEEecC
Confidence            35555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=92.92  E-value=0.093  Score=52.27  Aligned_cols=50  Identities=18%  Similarity=0.082  Sum_probs=30.4

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      ++|+.|.+..+. ++.     +....++|++|++++|.++.-  .   ...++|+.|+++.
T Consensus       222 ~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls~  271 (788)
T PRK15387        222 AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQLTSL--P---VLPPGLLELSIFS  271 (788)
T ss_pred             cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCCccCcc--c---CcccccceeeccC
Confidence            478888888643 442     222468899999998876421  1   1124666666644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=92.09  E-value=0.11  Score=46.99  Aligned_cols=85  Identities=16%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             HHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159          145 AIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG  224 (307)
Q Consensus       145 ~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~  224 (307)
                      .+.++|+|+.|+|+++.++.-.-.++ +....+++|.+...--...-..+...+.+|+.|+|++|.||--+-.+ .+...
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~  346 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLF  346 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc-ccccc
Confidence            36678888888888887643332233 22356777777654222222334457788888888888765322211 23344


Q ss_pred             CCcEEec
Q 037159          225 SLEALNI  231 (307)
Q Consensus       225 ~L~~L~l  231 (307)
                      .|..|++
T Consensus       347 ~l~~l~l  353 (498)
T KOG4237|consen  347 SLSTLNL  353 (498)
T ss_pred             eeeeeeh
Confidence            5566665

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=92.02  E-value=0.27  Score=46.16  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=21.9

Q ss_pred             HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCC
Q 037159          117 VYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFI  160 (307)
Q Consensus       117 ~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~  160 (307)
                      ..+....|.+.+++|++..--.-+++..+.+..|+|..|+|+++
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            33444455555555554432233344555555555555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.01  E-value=0.1  Score=50.71  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=23.5

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      -+|.|++|+|+.|.+++-.   .+..|++|++|||++...
T Consensus       185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH---HHHhcccccccccccchh
Confidence            3567777777777766543   345577777777765443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=91.79  E-value=0.17  Score=51.38  Aligned_cols=111  Identities=17%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPEL  201 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L  201 (307)
                      .||+|++|-+.+...--...-..++..+|.|..|||++|.-....-..|+. .-+|+.|++++..-..-+..+ ..+..|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~~LP~~l-~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGISHLPSGL-GNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCccccchHH-HHHHhh
Confidence            567788887765431011122234667889999999887643333333332 257888888766222222333 366788


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+|++..+.--. .+..+...+++|++|.+..-.
T Consensus       621 ~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccc-cccchhhhcccccEEEeeccc
Confidence            888888765211 113445567899999886654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=91.29  E-value=0.42  Score=44.97  Aligned_cols=88  Identities=13%  Similarity=0.039  Sum_probs=66.7

Q ss_pred             HHHHHhcCCCCCeEEecCCCC-CHHHHHHHHhcCCCCceEEeecc----CCHHHHHHHHhcCCCCCEEEecCCCCCH---
Q 037159          142 FRSAIQWWKGLESLTVPFISN-ASSIIQVIGANCKNFSMLKVMFS----FDLDFAMSLFMSIPELKVLSLRSSIVDK---  213 (307)
Q Consensus       142 l~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~c~~L~~L~l~~~----~~~~~~~~l~~~~p~L~~L~L~~~~it~---  213 (307)
                      +..+-.+.|.+..+.|+.|.+ .-+.+..+++..|+|+.|+|+..    ..+.++..+  ..+.|++|-+.||.+..   
T Consensus       210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~  287 (585)
T KOG3763|consen  210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS  287 (585)
T ss_pred             HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence            344556789999999999986 55778888898999999999875    223444444  46789999999998432   


Q ss_pred             ---HHHHHHHHcCCCCcEEec
Q 037159          214 ---NALNLILTLMGSLEALNI  231 (307)
Q Consensus       214 ---~~l~~l~~~~~~L~~L~l  231 (307)
                         +-+.+|.+.+|+|..||=
T Consensus       288 ~~s~yv~~i~~~FPKL~~LDG  308 (585)
T KOG3763|consen  288 DRSEYVSAIRELFPKLLRLDG  308 (585)
T ss_pred             hhHHHHHHHHHhcchheeecC
Confidence               345677888999998864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.14  E-value=0.078  Score=50.68  Aligned_cols=44  Identities=25%  Similarity=0.485  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCC-CCcceee
Q 037159           11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRD-PVLWETL   55 (307)
Q Consensus        11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~-p~lw~~i   55 (307)
                      ...||.|+...||.+|+.++++. +++||+.|+.++.+ +..|+..
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~~~~  152 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWWRMC  152 (537)
T ss_pred             hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhhhhh
Confidence            45699999999999999999998 99999999999977 5555444

>PF13013 F-box-like_2: F-box-like domain

Probab=91.02  E-value=0.28  Score=36.18  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=27.1

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhH
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCS   40 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk   40 (307)
                      ...+||.||+..||.+-+..+... ++..|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~-l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLA-LSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence            377899999999999999999988 888887

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.01  E-value=0.1  Score=49.12  Aligned_cols=62  Identities=18%  Similarity=0.242  Sum_probs=29.3

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCC----CccEEecCCCCCCCHHHHH---HHHhcCCCCCeEEecCCCC
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFP----MVKHLALPPCNEITVDGFR---SAIQWWKGLESLTVPFISN  162 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~----~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~  162 (307)
                      .+..++++++.. .++....+.+..+    .|+.|.+..|. ++..+..   ..+.+.+.|+.++++.|.+
T Consensus       116 ~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  116 TLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             cHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhcccchhHHHHHhccc
Confidence            455555555333 3555555444322    34555555543 4433322   2233355556666665554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=90.82  E-value=0.033  Score=55.19  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=40.8

Q ss_pred             cCCCCCeEEecCCCC---CHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159          148 WWKGLESLTVPFISN---ASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG  224 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~---~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~  224 (307)
                      ..++|+.|+|+++++   ++..+.    ..+.|+.|.++|.--..-...++ .++.|+.|...+|.+..  +.. +...|
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNkL~~Lp~tva-~~~~L~tL~ahsN~l~~--fPe-~~~l~  452 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNKLTTLPDTVA-NLGRLHTLRAHSNQLLS--FPE-LAQLP  452 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHh----chHHhHHHhcccchhhhhhHHHH-hhhhhHHHhhcCCceee--chh-hhhcC
Confidence            555666666666543   222222    22445555555541111112222 45566666666655321  112 23468


Q ss_pred             CCcEEeccCCcCCC
Q 037159          225 SLEALNISHCLLGQ  238 (307)
Q Consensus       225 ~L~~L~l~~C~~i~  238 (307)
                      .|+.+||+ |.+++
T Consensus       453 qL~~lDlS-~N~L~  465 (1081)
T KOG0618|consen  453 QLKVLDLS-CNNLS  465 (1081)
T ss_pred             cceEEecc-cchhh
Confidence            99999998 55554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.67  E-value=0.29  Score=44.43  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .+.+|+.|+|.+|.+.  .+..++.+|.+|++|++.+...-
T Consensus       503 nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence            6789999999998753  45678899999999999987654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.65  E-value=0.4  Score=25.88  Aligned_cols=23  Identities=9%  Similarity=0.040  Sum_probs=15.3

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHh
Q 037159          150 KGLESLTVPFISNASSIIQVIGA  172 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~  172 (307)
                      ++|++|+|++|.+++.+..++++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            45677777777776666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.70  E-value=0.13  Score=39.75  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEE
Q 037159          125 MVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVL  204 (307)
Q Consensus       125 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L  204 (307)
                      .+..++|+.|.-+.-......+.+-..|+..+|+++.+ .+.-+.+....|.++.|++...--.+....++ .+|.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~A-am~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELA-AMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHh-hhHHhhhc
Confidence            46777888886443332333344556677778887754 22233445555778888886652112222343 78899999


Q ss_pred             EecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          205 SLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       205 ~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +++.|.+...- ..++. +.+|-.|+..+-...
T Consensus       106 Nl~~N~l~~~p-~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLNAEP-RVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccccch-HHHHH-HHhHHHhcCCCCccc
Confidence            99998865321 12222 455666666554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.33  E-value=0.41  Score=39.42  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=53.1

Q ss_pred             CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHH-HHHHHHcCCCC
Q 037159          149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNA-LNLILTLMGSL  226 (307)
Q Consensus       149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~-l~~l~~~~~~L  226 (307)
                      ..+...+||+.+.+..   .....+.++|.+|.++.. +.. ....+...+|+|+.|.|.+|+|-.-+ +.. +..||.|
T Consensus        41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKL  115 (233)
T ss_pred             ccccceecccccchhh---cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcch-hccCCcc
Confidence            3466777777764311   111234578899998765 221 11233446899999999999855433 444 4569999


Q ss_pred             cEEeccCCcC
Q 037159          227 EALNISHCLL  236 (307)
Q Consensus       227 ~~L~l~~C~~  236 (307)
                      ++|.+-+...
T Consensus       116 ~~Ltll~Npv  125 (233)
T KOG1644|consen  116 EYLTLLGNPV  125 (233)
T ss_pred             ceeeecCCch
Confidence            9999866543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.26  E-value=0.41  Score=22.53  Aligned_cols=11  Identities=27%  Similarity=0.434  Sum_probs=4.9

Q ss_pred             CCcEEeccCCc
Q 037159          225 SLEALNISHCL  235 (307)
Q Consensus       225 ~L~~L~l~~C~  235 (307)
                      +|+.|+|++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            45555555554

...

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.23  E-value=0.31  Score=25.88  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             CCCEEEecCCCCCHH-HHHHHHHcCC
Q 037159          200 ELKVLSLRSSIVDKN-ALNLILTLMG  224 (307)
Q Consensus       200 ~L~~L~L~~~~it~~-~l~~l~~~~~  224 (307)
                      +||.|.|....++++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            478889988885544 6888888887

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=87.89  E-value=0.4  Score=47.83  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=36.5

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH--HHHHHHHHcCCCC
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK--NALNLILTLMGSL  226 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~--~~l~~l~~~~~~L  226 (307)
                      ++|+.|++++|.++.- -..+   .++|+.|+++++ +. .-...+.   +.|+.|++++|.++.  ..+..+...+|++
T Consensus       346 ~sL~~L~Ls~N~L~~L-P~~l---p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        346 PELQVLDVSKNQITVL-PETL---PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQP  417 (754)
T ss_pred             CcccEEECCCCCCCcC-Chhh---cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence            4666666666654210 0011   145666666544 11 0000111   245566666665431  2344444555666


Q ss_pred             cEEeccCCc
Q 037159          227 EALNISHCL  235 (307)
Q Consensus       227 ~~L~l~~C~  235 (307)
                      ..|+|.+..
T Consensus       418 ~~L~L~~Np  426 (754)
T PRK15370        418 TRIIVEYNP  426 (754)
T ss_pred             cEEEeeCCC
Confidence            666666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.71  E-value=0.39  Score=45.32  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=15.0

Q ss_pred             CEEEecCCCCCHHHHH---HHHHcCCCCcEEeccCCc
Q 037159          202 KVLSLRSSIVDKNALN---LILTLMGSLEALNISHCL  235 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~---~l~~~~~~L~~L~l~~C~  235 (307)
                      +++++..|.+++.+..   ..+..|++++.|.+....
T Consensus       265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            4555555554444322   233334445554444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=87.49  E-value=0.28  Score=37.89  Aligned_cols=84  Identities=7%  Similarity=-0.065  Sum_probs=51.1

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELK  202 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~  202 (307)
                      ...|+..+|++.. +.+ -=..+..++|.++.|+++++.+.+-..+ ++ ..|.|+.|+++..--...+..++. +.+|-
T Consensus        52 ~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~l~~~p~vi~~-L~~l~  126 (177)
T KOG4579|consen   52 GYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNPLNAEPRVIAP-LIKLD  126 (177)
T ss_pred             CceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCccccchHHHHH-HHhHH
Confidence            4567777777542 211 0114556677888888888876544444 43 348888888876533344455553 66777


Q ss_pred             EEEecCCCC
Q 037159          203 VLSLRSSIV  211 (307)
Q Consensus       203 ~L~L~~~~i  211 (307)
                      .|+.-++.+
T Consensus       127 ~Lds~~na~  135 (177)
T KOG4579|consen  127 MLDSPENAR  135 (177)
T ss_pred             HhcCCCCcc
Confidence            777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.12  E-value=0.68  Score=42.61  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhcCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGANCK  175 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~c~  175 (307)
                      +.+++.|.++.+ .     +..+-..-++|++|.+.+|..++.  +...+  .++|++|++++|. +.     .+   -+
T Consensus        51 ~~~l~~L~Is~c-~-----L~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----sL---P~  112 (426)
T PRK15386         51 ARASGRLYIKDC-D-----IESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----GL---PE  112 (426)
T ss_pred             hcCCCEEEeCCC-C-----CcccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----cc---cc
Confidence            367788888765 2     222212234699999988876532  11112  3588899998873 21     11   24


Q ss_pred             CCceEEeeccCCHHHHHHHHhcC-CCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          176 NFSMLKVMFSFDLDFAMSLFMSI-PELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~l~~~~-p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|+.|++.+....    .+. .+ ++|+.|.+.++. .....+..  .-.++|++|++++|..+.
T Consensus       113 sLe~L~L~~n~~~----~L~-~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        113 SVRSLEIKGSATD----SIK-NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII  170 (426)
T ss_pred             ccceEEeCCCCCc----ccc-cCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence            6777877543111    111 22 356666664322 11111111  012567777777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=85.76  E-value=0.013  Score=46.87  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=17.8

Q ss_pred             cCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159          197 SIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       197 ~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .+.+|+-|.++.+. ++-.   .-+..+.+|++|+|.+.
T Consensus       148 ~lt~lqil~lrdndll~lp---keig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDLLSLP---KEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhcceeEEeeccCchhhCc---HHHHHHHHHHHHhcccc
Confidence            45677777777766 3311   11222344555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=84.38  E-value=0.21  Score=40.01  Aligned_cols=104  Identities=22%  Similarity=0.212  Sum_probs=54.2

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCE
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKV  203 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~  203 (307)
                      .+++.|.|+... ++.  +..-+..+.+|+.|+++++.+.+  +..-....|+|+.|+++-..-......+ .++|-|+.
T Consensus        33 s~ITrLtLSHNK-l~~--vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LTV--VPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEV  106 (264)
T ss_pred             hhhhhhhcccCc-eee--cCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCcccc-CCCchhhh
Confidence            456677776432 221  11112345688888888876522  1111233477888877522111111122 36788888


Q ss_pred             EEecCCCCCHHHHHHHHHcCCCCcEEeccC
Q 037159          204 LSLRSSIVDKNALNLILTLMGSLEALNISH  233 (307)
Q Consensus       204 L~L~~~~it~~~l~~l~~~~~~L~~L~l~~  233 (307)
                      |+|.++.++...+..=.-.+..|+.|-+++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcC
Confidence            888888777655432222233445555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=84.31  E-value=0.28  Score=45.53  Aligned_cols=106  Identities=17%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      +.+|+.|++.... +.  .+......+++|+.|+|+++.+++ ..+..    ++.|+.|++.+. +.+.  .. ...+++
T Consensus        94 ~~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~--~~-~~~l~~  163 (414)
T KOG0531|consen   94 LKSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDI--SG-LESLKS  163 (414)
T ss_pred             ccceeeeeccccc-hh--hcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhc--cC-Cccchh
Confidence            4566666666432 22  222224567788888888776632 22222    244777777654 1111  11 113677


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      |+.+++.++.+++-.-.. +..+.+|+.+.+.+......
T Consensus       164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            777777777765433311 45667777777777666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.27  E-value=1.3  Score=40.33  Aligned_cols=88  Identities=13%  Similarity=0.151  Sum_probs=52.6

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC--CH------HHHHHHH--------------hcCCCCc
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN--AS------SIIQVIG--------------ANCKNFS  178 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~------~~l~~i~--------------~~c~~L~  178 (307)
                      ...++|..|+|++.. ..+  +..-...+..|+.|+++.+.+  -+      ..++.+.              .+..+|+
T Consensus       432 ~~l~kLt~L~L~NN~-Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNL-LND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             Hhhhcceeeecccch-hhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence            356888999988643 211  222233455689999988764  11      1222221              2345677


Q ss_pred             eEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037159          179 MLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVD  212 (307)
Q Consensus       179 ~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it  212 (307)
                      .|++....- ..+..+..+|.+|++|.+.||.+.
T Consensus       509 tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence            777755411 223334458999999999999854

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=84.17  E-value=0.81  Score=33.01  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCCCCCCHHHHHHHHhcCChHHHhh
Q 037159            9 RNWQNMHYDILVKIFMALRVTDLIF   33 (307)
Q Consensus         9 ~~w~~LP~eiL~~If~~L~~~d~~~   33 (307)
                      ..|..||.|+-..|+++|+..|+..
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~   94 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKK   94 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHH
Confidence            5699999999999999999999864

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=81.41  E-value=0.87  Score=40.33  Aligned_cols=51  Identities=18%  Similarity=0.417  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHhcCChHHH-------hhHHhhhhHHHHHhcC----CCCcceeeecCc
Q 037159            9 RNWQNMHYDILVKIFMALRVTDL-------IFAVSKVCSSWRAASR----DPVLWETLDLNV   59 (307)
Q Consensus         9 ~~w~~LP~eiL~~If~~L~~~d~-------~~~~s~VCk~Wr~~~~----~p~lw~~i~l~~   59 (307)
                      ..|++||+|.|..|.......|.       +.+++-||+.|+..+.    .|..|.++++..
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~  104 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPA  104 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhH
Confidence            46999999999999998854433       3349999999999774    377888877654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=80.65  E-value=0.77  Score=42.08  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .+++|+.|+++++.+++-.-   +....+|+.|++++-...
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence            44455555555555443221   334455555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 16/233 (6%)

Query: 10  NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILP 69
           +W ++  ++L+ IF  L + +L+  VS VC  W   + D  LW+TLDL     N    + 
Sbjct: 8   SWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLDLT--GKNLHPDVT 64

Query: 70  SNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHL 129
                          +      A   S   V+ +  + S+ ++   L    ++   +++L
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123

Query: 130 ALPPCNEITVDGFRSAIQWWKGLESLT---VPFISNASSIIQVIGANCKNFSMLKVMFSF 186
           +L     ++       +     L  L        S  +  +Q + ++C     L + + F
Sbjct: 124 SLEGLR-LSDPIVN-TLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCF 179

Query: 187 DLD---FAMSLFMSIPELKVLSLR--SSIVDKNALNLILTLMGSLEALNISHC 234
           D       +++      +  L+L      + K+ L+ ++    +L  L++S  
Sbjct: 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 17  DILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNA--FDILPSNSNG 74
           ++L  +F  +++     +VS VC SW    R    W    + +  C A     +      
Sbjct: 12  EVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVFIGNCYAVSPATVIRRFPK 67

Query: 75  LSD--------------GHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAA 120
           +                    W   ++    A   S   ++ +       + D+ L   A
Sbjct: 68  VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIA 126

Query: 121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTV---PFISNASSIIQVIGANCKNF 177
             F   K L L  C   + DG  +     + L+ L +        +   +        + 
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 178 SMLKV-MFSFDLDFA--MSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC 234
             L +   + ++ F+    L    P LK L L  ++     L  +L     LE L     
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL-EKLATLLQRAPQLEELGTGGY 245

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 102 RLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCN---------EITVDGFRSAIQWWKGL 152
             +  +   + +  L+  A   P +    L             E    GF + ++  K L
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434

Query: 153 ESLTVPF-ISNASSIIQVIGANCKNFSMLKVMFSFDLDFAM-SLFMSIPELKVLSLRSSI 210
             L++   +++     + IG   K   ML V F+ D D  M  +      L+ L +R   
Sbjct: 435 RRLSLSGLLTDKV--FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 211 VDKNALNLILTLMGSLEALNISHC 234
               AL    + + ++ +L +S C
Sbjct: 493 FGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 96  SCKTVKRL-IFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLES 154
           +  ++  L I   +  +    L    TR P +K L L     + ++   + +Q    LE 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEE 239

Query: 155 LTVPFISNAS-----SIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSS 209
           L     +        S + V  + CK    L   +     +  +++     L  L+L  +
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 210 IVDKNALNLILTLMGSLEALNISHCL 235
            V    L  +L     L+ L +   +
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYI 325

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD 56
          +W ++  ++L+ IF  L + +L+  VS VC  W   + D  LW+TLD
Sbjct: 8  SWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLD 53

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 25/246 (10%), Positives = 70/246 (28%), Gaps = 34/246 (13%)

Query: 17  DILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETL-------------------DL 57
           D++ ++   +       + S VC  W     +     T+                    L
Sbjct: 19  DVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSL 78

Query: 58  NVLLCNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLV 117
            +       +            + W+  +         + + +K + F   I    +   
Sbjct: 79  KLKGKPRAAMFNLIPENWGGYVTPWVTEI-------SNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 118 YAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTV---PFISNASSIIQVIGANC 174
            A  R   ++ L L  C+  T DG  S +   + +++L +    F       +  +  + 
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 175 KNFSMLKVMFS----FDLDFAMSLFMSIPELKVLSL-RSSIVDKNALNLILTLMGSLEAL 229
            +  +L    +           ++  +   L  + +    I++          +      
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 230 NISHCL 235
           +++  +
Sbjct: 252 SLNEDI 257

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/175 (12%), Positives = 55/175 (31%), Gaps = 9/175 (5%)

Query: 62  CNAFDILPSNSNGLSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAAT 121
           C     L    +  S+    WL+   +  + + L    V          +  + L   A 
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHE--LAQHNTSL---EVLNFYMTEFAKISPKDLETIAR 217

Query: 122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLK 181
               +  + +     + + GF  A      LE      ++    + +          + +
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKA---AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 182 VMFSFDLDFAMSLFMSI-PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL 235
           +  S+     M +      +++ L L  ++++      ++    +LE L   + +
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 19/154 (12%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 95  LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLES 154
           +     ++ + +    +    L+  A     ++++A+   ++IT +   S   + K L  
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCD 407

Query: 155 LTVPFISNASSI--------IQVIGANCKNFSMLKVMFSFDL--DFAMS-LFMSIPELKV 203
             +  +     I        ++ +   CK               D  +S +    P ++ 
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 204 LSLRSSIVDKNALNLILTLMGSLEALNISHCLLG 237
           + L         L        +L+ L +  C   
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.52
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.56
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.53
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.5
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.38
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.32
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.15
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.14
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.1
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.99
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.98
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.76
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.7
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.04
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.95
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	92.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	85.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	85.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	80.85

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.94  E-value=8.4e-26  Score=201.25  Aligned_cols=225  Identities=20%  Similarity=0.284  Sum_probs=122.6

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccc--cc----c--ccc--cCCC-----
Q 037159            7 NSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLL--CN----A--FDI--LPSN-----   71 (307)
Q Consensus         7 ~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~--~~----~--~~~--~~~~-----   71 (307)
                      +.+.|++||+|++.+||+||+..|+.+ +++|||+|+.++.+|.+|+.++++...  +.    +  ...  +...     
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~   83 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMD   83 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEEC
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccc
Confidence            467899999999999999999999998 999999999999999999999987641  00    0  000  0000     


Q ss_pred             ---CCccc-c-----CCCCHHHHHHH-HHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHH
Q 037159           72 ---SNGLS-D-----GHSSWLNAMHI-LNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDG  141 (307)
Q Consensus        72 ---~~~~~-~-----~~~~~~~l~~~-l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~  141 (307)
                         +..+. .     +.... .+... +.. .-..+.++++|+++.+ .+++.....++. +++|++|+|++|..+++.+
T Consensus        84 ~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~  159 (336)
T 2ast_B           84 QPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFA  159 (336)
T ss_dssp             SCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHH
T ss_pred             ccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHH
Confidence               00000 0     00000 00000 111 1122345555555543 244444444433 5555555555554455555


Q ss_pred             HHHHHhcCCCCCeEEecCC-CCCHHHHHHHHhcCC-CCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCC-CCHHH
Q 037159          142 FRSAIQWWKGLESLTVPFI-SNASSIIQVIGANCK-NFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSI-VDKNA  215 (307)
Q Consensus       142 l~~~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~c~-~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~  215 (307)
                      +..++..+++|++|++++| .+++..+..+...++ +|++|+++++   +++..+......+|+|++|++++|. +++.+
T Consensus       160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence            5555555555555555555 455554444445555 5555555543   3334444444455555555555555 55544


Q ss_pred             HHHHHHcCCCCcEEeccCCcCC
Q 037159          216 LNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       216 l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +..+ ..+++|++|++++|..+
T Consensus       240 ~~~l-~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          240 FQEF-FQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             GGGG-GGCTTCCEEECTTCTTC
T ss_pred             HHHH-hCCCCCCEeeCCCCCCC
Confidence            4432 34555555555555533

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=3.7e-22  Score=190.69  Aligned_cols=221  Identities=16%  Similarity=0.178  Sum_probs=126.2

Q ss_pred             CCCCCCCHHHHHHHHhcCC-hHHHhhHHhhhhHHHHHhcCCCCcceeeecCcccc--------ccccc--c--CCCCCc-
Q 037159            9 RNWQNMHYDILVKIFMALR-VTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLC--------NAFDI--L--PSNSNG-   74 (307)
Q Consensus         9 ~~w~~LP~eiL~~If~~L~-~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~--------~~~~~--~--~~~~~~-   74 (307)
                      ..|++||+|||.+||+||+ .+|+.+ +++|||+|+++  .+..|+.+++.....        +|...  +  ...+.. 
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~   80 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEI--ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA   80 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHH--HHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHh--hhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence            3699999999999999999 899998 99999999999  345677777654310        01000  0  000000 


Q ss_pred             ---cccCCCCHHHHHHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 037159           75 ---LSDGHSSWLNAMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG  151 (307)
Q Consensus        75 ---~~~~~~~~~~l~~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  151 (307)
                         ..+..-.. .....+.. +...+.++++|+++.+. +++..+..++..+++|++|+|.+|..+++.++..++..|++
T Consensus        81 ~~~l~~~~~~~-~~~~~l~~-l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  157 (594)
T 2p1m_B           81 DFNLVPDGWGG-YVYPWIEA-MSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN  157 (594)
T ss_dssp             GGTCSCTTSCC-BCHHHHHH-HHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred             hcccccccccc-hhhHHHHH-HHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC
Confidence               00000000 01111111 22345566777766543 56666666666667777777776655666666666666777


Q ss_pred             CCeEEecCCCCCH---HHHHHHHhcCCCCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159          152 LESLTVPFISNAS---SIIQVIGANCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS  225 (307)
Q Consensus       152 L~~L~L~~~~~~~---~~l~~i~~~c~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~  225 (307)
                      |++|+|++|.+++   ..+..+...|++|++|+++++   +++..+..+...+|+|++|+|.+|. ...++..++..+++
T Consensus       158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~l~~~~~~~~~  236 (594)
T 2p1m_B          158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQ  236 (594)
T ss_dssp             CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS-CHHHHHHHHHHCTT
T ss_pred             CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC-cHHHHHHHHhcCCc
Confidence            7777777665422   234444455667777777554   4455555555566777777777663 22336666666777


Q ss_pred             CcEEeccCCcC
Q 037159          226 LEALNISHCLL  236 (307)
Q Consensus       226 L~~L~l~~C~~  236 (307)
                      |++|++++|..
T Consensus       237 L~~L~l~~~~~  247 (594)
T 2p1m_B          237 LEELGTGGYTA  247 (594)
T ss_dssp             CSEEECSBCCC
T ss_pred             ceEcccccccC
Confidence            77777666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=1.6e-19  Score=172.34  Aligned_cols=197  Identities=14%  Similarity=0.111  Sum_probs=117.5

Q ss_pred             CCCCCHHHHHHHHhcC-ChHHHhhHHhhhhHHHHHhcCCCCcceeeecCccccccccccCCCCCccccCCCCHHHHHHHH
Q 037159           11 WQNMHYDILVKIFMAL-RVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLSDGHSSWLNAMHIL   89 (307)
Q Consensus        11 w~~LP~eiL~~If~~L-~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   89 (307)
                      ..+||+|+|.+||+|| +.+|+.+ +++|||+|+.+..  ..++.+.+...   +..                 ....  
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~---~~~-----------------~~~~--   67 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALC---YTA-----------------TPDR--   67 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCG---GGS-----------------CHHH--
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeec---ccc-----------------ChHH--
Confidence            3489999999999999 8999998 9999999999942  22334433221   000                 0111  


Q ss_pred             HHHHHhcCCCccEEEeccCCC-------------CCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCC-CCeE
Q 037159           90 NNASILSCKTVKRLIFNYSIY-------------LKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKG-LESL  155 (307)
Q Consensus        90 ~~~~~~s~~~l~~L~l~~~~~-------------~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L~~L  155 (307)
                         +....++++++++.++..             .....+..++..+++|++|+|+++ .+++.++..+...++. |++|
T Consensus        68 ---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           68 ---LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             ---HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEE
T ss_pred             ---HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEE
Confidence               112234466666644221             223445556666666666666655 3666555555544555 6666


Q ss_pred             EecCCC-CCHHHHHHHHhcCCCCceEEeecc-C---CHHHHHHHHhcCCCCCEEEecCCCCC---HHHHHHHHHcCCCCc
Q 037159          156 TVPFIS-NASSIIQVIGANCKNFSMLKVMFS-F---DLDFAMSLFMSIPELKVLSLRSSIVD---KNALNLILTLMGSLE  227 (307)
Q Consensus       156 ~L~~~~-~~~~~l~~i~~~c~~L~~L~l~~~-~---~~~~~~~l~~~~p~L~~L~L~~~~it---~~~l~~l~~~~~~L~  227 (307)
                      +|++|. +++..+..+...|++|++|+++++ +   +...+..+...+|+|++|+++++.++   +.++..++.+||+|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            666665 455566666666666666666554 1   22223444456666666666666643   556666666666666


Q ss_pred             EEeccCCcC
Q 037159          228 ALNISHCLL  236 (307)
Q Consensus       228 ~L~l~~C~~  236 (307)
                      +|++++|..
T Consensus       224 ~L~L~~~~~  232 (592)
T 3ogk_B          224 SVKVGDFEI  232 (592)
T ss_dssp             EEECSSCBG
T ss_pred             EEeccCccH
Confidence            666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=2.4e-13  Score=129.54  Aligned_cols=140  Identities=15%  Similarity=0.180  Sum_probs=104.1

Q ss_pred             cCCCccEEEe--------ccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEec--C----CC
Q 037159           96 SCKTVKRLIF--------NYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVP--F----IS  161 (307)
Q Consensus        96 s~~~l~~L~l--------~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~--~----~~  161 (307)
                      .+.++++|++        ..+..+++..+..++..+++|+.|.+. |..+++.++..+...+|+|++|+++  +    +.
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  414 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY  414 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence            3566777776        334566777777777777777777553 5567777777777677888888887  2    23


Q ss_pred             CC----HHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          162 NA----SSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       162 ~~----~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      ++    +..+..+...|++|+.|++++.+++..+..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|..
T Consensus       415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            44    5677777777888888888776777777777766888888888888888888888878888888888888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.53  E-value=2.7e-13  Score=129.20  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             cCCCccEEEecc----------CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecC----CC
Q 037159           96 SCKTVKRLIFNY----------SIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPF----IS  161 (307)
Q Consensus        96 s~~~l~~L~l~~----------~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~----~~  161 (307)
                      .+.+|++|++..          +..+++..+..++..|++|++|++. |..+++.++..+...+++|++|++++    +.
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            455677777763          5566777777766777777777773 55677777766666677777777752    23


Q ss_pred             CCH----HHHHHHHhcCCCCceEEeec---cCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          162 NAS----SIIQVIGANCKNFSMLKVMF---SFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       162 ~~~----~~l~~i~~~c~~L~~L~l~~---~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      +++    .++..+...|++|++|+++.   .+++..+..+...+|+|++|+|++|.+++.++..++.+|++|++|+|++|
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            332    45666666777788887743   35777777777778999999999888999888888888999999999999


Q ss_pred             cCCC
Q 037159          235 LLGQ  238 (307)
Q Consensus       235 ~~i~  238 (307)
                      . ++
T Consensus       499 ~-l~  501 (592)
T 3ogk_B          499 C-FS  501 (592)
T ss_dssp             C-CB
T ss_pred             C-Cc
Confidence            8 55

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.52  E-value=1.2e-13  Score=122.52  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=86.5

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC-CCCeEEecCC--CCCHHHHHHHHhc
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWK-GLESLTVPFI--SNASSIIQVIGAN  173 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~--~~~~~~l~~i~~~  173 (307)
                      ..+++.|+++.+..+++..+..+...+++|++|++++|..+++.++...+..++ +|++|++++|  .+++..+..+...
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            456777777666566666666666667777777777664566666666666677 7777777776  4565666666666


Q ss_pred             CCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159          174 CKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       174 c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      |++|++|+++++  +++..+..+. .+++|++|++++|. +++.++.. +..+++|++|++++|
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence            677777777655  2333344343 56777777777774 66665533 244677777777776

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.48  E-value=2.1e-14  Score=91.86  Aligned_cols=49  Identities=35%  Similarity=0.739  Sum_probs=40.4

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159            7 NSRNWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD   56 (307)
Q Consensus         7 ~~~~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~   56 (307)
                      +...|+.||+|++.+||+||+..|+++ +++|||+|+.++.+|.+|+.+|
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld   53 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD   53 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence            456799999999999999999999998 9999999999999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.40  E-value=3.6e-13  Score=107.61  Aligned_cols=85  Identities=8%  Similarity=-0.023  Sum_probs=47.5

Q ss_pred             CCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHh---cCCCCCEEEecCCC-CCHHHHHHHHHcCCC
Q 037159          152 LESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFM---SIPELKVLSLRSSI-VDKNALNLILTLMGS  225 (307)
Q Consensus       152 L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~---~~p~L~~L~L~~~~-it~~~l~~l~~~~~~  225 (307)
                      |++|++++|.+++.++..+ ..|++|++|+|++|  ++|.++..++.   .+++|++|+|++|. |||.|+..+. .|++
T Consensus        63 L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~  140 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN  140 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred             EeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence            4444444444444444444 23444444444443  44444444442   13567777777776 7777776654 4677


Q ss_pred             CcEEeccCCcCCC
Q 037159          226 LEALNISHCLLGQ  238 (307)
Q Consensus       226 L~~L~l~~C~~i~  238 (307)
                      |++|+|++|..+|
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            7777777777776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.36  E-value=9.8e-13  Score=105.06  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHHHHHhc---CCCCceEEeecc--CCHHHHHHHHhc
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQVIGAN---CKNFSMLKVMFS--FDLDFAMSLFMS  197 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~---c~~L~~L~l~~~--~~~~~~~~l~~~  197 (307)
                      .+|++|++++|. +++.|+..+ ..|++|++|+|++|. ++|.++..++..   |++|++|+|++|  ++|.++..++ .
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~  137 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H  137 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence            368888888886 888888765 588888888888885 788888888863   678888988876  7888888886 6


Q ss_pred             CCCCCEEEecCCC-CCHHHH--HHHHHcCCCCc
Q 037159          198 IPELKVLSLRSSI-VDKNAL--NLILTLMGSLE  227 (307)
Q Consensus       198 ~p~L~~L~L~~~~-it~~~l--~~l~~~~~~L~  227 (307)
                      +|+|++|+|++|. ||+.++  ..+-+..|+++
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            8999999999988 888764  45566778776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=8.5e-11  Score=105.88  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=112.9

Q ss_pred             HHHHhcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH----hcCCCCCeEEecCCCCCHHH
Q 037159           91 NASILSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI----QWWKGLESLTVPFISNASSI  166 (307)
Q Consensus        91 ~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~----~~~~~L~~L~L~~~~~~~~~  166 (307)
                      ..+.....++++|+++.+ .+++..+..++..+++|+.|+|+++ .+++.+...+.    ..+++|++|+|++|.+++..
T Consensus        94 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~  171 (372)
T 3un9_A           94 AVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG  171 (372)
T ss_dssp             HHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred             HHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence            344444568999999875 5788888888888889999999977 48887766554    24689999999999988777


Q ss_pred             HHHHH---hcCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHH---HcCCCCcEEeccCCcC
Q 037159          167 IQVIG---ANCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLIL---TLMGSLEALNISHCLL  236 (307)
Q Consensus       167 l~~i~---~~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~~~L~~L~l~~C~~  236 (307)
                      ...++   ..+++|++|+++++ +++.++..++   ...++|++|+|++|.+++.+...+.   ..+++|++|+|++|..
T Consensus       172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            66664   45789999999877 6666655553   4578999999999999998866554   4679999999999864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.25  E-value=3e-10  Score=92.12  Aligned_cols=124  Identities=13%  Similarity=0.083  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-
Q 037159          113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS-  185 (307)
Q Consensus       113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~-  185 (307)
                      ++.+..+...+++|++|+|+++..+++.++..+   +...+.|++|+|++|.+++.+...++.   ..++|++|+|+++ 
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            455667777889999999997746888775554   456789999999999998887776654   4578999999876 


Q ss_pred             CCHHHHHHHHh---cCCCCCEEEe--cCCCCCHHHHHH---HHHcCCCCcEEeccCCcC
Q 037159          186 FDLDFAMSLFM---SIPELKVLSL--RSSIVDKNALNL---ILTLMGSLEALNISHCLL  236 (307)
Q Consensus       186 ~~~~~~~~l~~---~~p~L~~L~L--~~~~it~~~l~~---l~~~~~~L~~L~l~~C~~  236 (307)
                      +++.++..++.   ..+.|++|+|  .+|.+++++...   .+..+++|++|++++|..
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            78888777754   4578999999  889999998554   455679999999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.3e-10  Score=104.67  Aligned_cols=138  Identities=13%  Similarity=0.138  Sum_probs=111.4

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhh----CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHh
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATR----FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGA  172 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~  172 (307)
                      ...++.++++.+. +++.....++..    +++|+.|+|+++. +++.++..++..+++|++|+|++|.+++.....++.
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            4578999998755 676665555443    4699999999775 899998888888889999999999999888877764


Q ss_pred             ----cCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHH---HcCCCCcEEeccCCcC
Q 037159          173 ----NCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLIL---TLMGSLEALNISHCLL  236 (307)
Q Consensus       173 ----~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~---~~~~~L~~L~l~~C~~  236 (307)
                          .+++|++|+++++ +++.++..++   ..+++|++|+|++|.+++.++..+.   ..+++|+.|+|++|..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence                4689999999887 5565555553   4689999999999999999876654   5578999999999965

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=5.5e-10  Score=102.97  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             CCCccEEEeccCCCCCHHHHH---HHHhhCCCccEEecCCCCCCCHHHHHHHHhcCC----CCCeEEecCCCCCHHH---
Q 037159           97 CKTVKRLIFNYSIYLKDEHLV---YAATRFPMVKHLALPPCNEITVDGFRSAIQWWK----GLESLTVPFISNASSI---  166 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~---~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~~~~---  166 (307)
                      ..+++.++++.+. +++....   .....+++|++|+|+++. +++.++..+...++    +|++|++++|.+++..   
T Consensus        27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            4578888888755 5655433   334457889999998754 77777777777676    6999999988876543   


Q ss_pred             HHHHHhcCCCCceEEeecc-CCHHHHHHHHh----cCCCCCEEEecCCCCCHHHH---HHHHHcCCCCcEEeccCCc
Q 037159          167 IQVIGANCKNFSMLKVMFS-FDLDFAMSLFM----SIPELKVLSLRSSIVDKNAL---NLILTLMGSLEALNISHCL  235 (307)
Q Consensus       167 l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~----~~p~L~~L~L~~~~it~~~l---~~l~~~~~~L~~L~l~~C~  235 (307)
                      +......+++|++|+++++ +.+..+..++.    ..++|++|++++|.+++.+.   ...+..+++|++|++++|.
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            3333456788999998776 55555555543    24579999999988887553   4455668899999998887

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.17  E-value=8.7e-10  Score=99.57  Aligned_cols=137  Identities=12%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             CCccEEEeccCCCCCHHHHHH---HHhhCCCccEEecCCCCCCCHHHHHHH----HhcCCCCCeEEecCCCCCHHHHHHH
Q 037159           98 KTVKRLIFNYSIYLKDEHLVY---AATRFPMVKHLALPPCNEITVDGFRSA----IQWWKGLESLTVPFISNASSIIQVI  170 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~---i~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~l~~i  170 (307)
                      .+++.|.++.+. +++..+..   ....+++|++|+|+++ .+++.++..+    +..+++|+.|+|++|.+++.+...+
T Consensus       159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            455555555433 23222222   2224556666666654 3555543332    2355666666666665544332222


Q ss_pred             ---HhcCCCCceEEeecc-CCHHHHHHHHh-----cCCCCCEEEecCCCCCHHHHHHHH----HcCCCCcEEeccCCcC
Q 037159          171 ---GANCKNFSMLKVMFS-FDLDFAMSLFM-----SIPELKVLSLRSSIVDKNALNLIL----TLMGSLEALNISHCLL  236 (307)
Q Consensus       171 ---~~~c~~L~~L~l~~~-~~~~~~~~l~~-----~~p~L~~L~L~~~~it~~~l~~l~----~~~~~L~~L~l~~C~~  236 (307)
                         ...+++|+.|+++++ +.+.++..++.     .+++|++|+|++|.+++.++..+.    .++|+|++|++++|..
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence               234556666666544 44443333322     156666666666666654333222    3356666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.17  E-value=6.9e-10  Score=100.24  Aligned_cols=141  Identities=12%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHh---hC---------CCccEEecCCCCCCCHHHHH---HHHhcCCCCCeEEecCC
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAAT---RF---------PMVKHLALPPCNEITVDGFR---SAIQWWKGLESLTVPFI  160 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~---~~---------~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~  160 (307)
                      ...+++.|+++.+.. ++.....++.   .+         ++|+.|+|+++. +++.++.   ..+..+++|++|++++|
T Consensus       120 ~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          120 KHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             HCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            467899999988654 5544443333   33         899999999775 6655544   56678999999999999


Q ss_pred             CCCHHHHHHHHh----cCCCCceEEeecc-CCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHHc-----CCCCc
Q 037159          161 SNASSIIQVIGA----NCKNFSMLKVMFS-FDLDFAMSL---FMSIPELKVLSLRSSIVDKNALNLILTL-----MGSLE  227 (307)
Q Consensus       161 ~~~~~~l~~i~~----~c~~L~~L~l~~~-~~~~~~~~l---~~~~p~L~~L~L~~~~it~~~l~~l~~~-----~~~L~  227 (307)
                      .+++.++..+..    .+++|+.|+++++ +++.++..+   ...+|+|++|+|++|.+++.+...+...     +++|+
T Consensus       198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~  277 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  277 (386)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence            998887666554    7899999999877 444433333   3578999999999999999877655543     89999


Q ss_pred             EEeccCCcCCC
Q 037159          228 ALNISHCLLGQ  238 (307)
Q Consensus       228 ~L~l~~C~~i~  238 (307)
                      +|+|++|..-+
T Consensus       278 ~L~L~~n~i~~  288 (386)
T 2ca6_A          278 TLRLQYNEIEL  288 (386)
T ss_dssp             EEECCSSCCBH
T ss_pred             EEECcCCcCCH
Confidence            99999997543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=1e-09  Score=101.19  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             CCCccEEecCCCCCCCHHH---HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhc----CCCCceEEeecc-CCHHH---H
Q 037159          123 FPMVKHLALPPCNEITVDG---FRSAIQWWKGLESLTVPFISNASSIIQVIGAN----CKNFSMLKVMFS-FDLDF---A  191 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~----c~~L~~L~l~~~-~~~~~---~  191 (307)
                      +++|+.|++++| .+++.+   +...+..+++|++|++++|.+++.....++..    .++|++|+++++ +++..   +
T Consensus       255 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          255 SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            344555555444 244433   22223344555555555554444333333321    134444444433 22111   1


Q ss_pred             HHHHhcCCCCCEEEecCCCCCHHHHHHHHHc----CCCCcEEeccCC
Q 037159          192 MSLFMSIPELKVLSLRSSIVDKNALNLILTL----MGSLEALNISHC  234 (307)
Q Consensus       192 ~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~----~~~L~~L~l~~C  234 (307)
                      ......+++|++|+|++|.+++.++..+...    +++|++|++++|
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            1112234555555555555555554444332    345555555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.08  E-value=5.9e-10  Score=99.85  Aligned_cols=136  Identities=12%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh-cCCCCCeEEecCCC---CCHHHH---H
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQ-WWKGLESLTVPFIS---NASSII---Q  168 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~---~~~~~l---~  168 (307)
                      ..++|++|.+.++....-   ..+  ..++|++|+|..| .+++.++..+.. .+|+|++|+|+.+.   ..+..+   .
T Consensus       170 ~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             TCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             cCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            456889998876532211   111  3689999999855 488888877764 79999999996421   122112   1


Q ss_pred             HHH--hcCCCCceEEeecc-CCHHHHHHHHh--cCCCCCEEEecCCCCCHHHHHHHHH---cCCCCcEEeccCCcCCC
Q 037159          169 VIG--ANCKNFSMLKVMFS-FDLDFAMSLFM--SIPELKVLSLRSSIVDKNALNLILT---LMGSLEALNISHCLLGQ  238 (307)
Q Consensus       169 ~i~--~~c~~L~~L~l~~~-~~~~~~~~l~~--~~p~L~~L~L~~~~it~~~l~~l~~---~~~~L~~L~l~~C~~i~  238 (307)
                      .+.  ..+|+|+.|++..+ +.+.....+++  .+|+|++|+|+.|.+++.+...+..   .+++|+.|+|++|. ++
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~  320 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS  320 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence            111  35799999999766 55555555653  6899999999999999998877764   47999999999885 55

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=3.4e-08  Score=79.88  Aligned_cols=129  Identities=12%  Similarity=0.009  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHh---hCCCccEEecCCCCCCCHHHHHH---HHhcCCCCCeEEec
Q 037159           85 AMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAAT---RFPMVKHLALPPCNEITVDGFRS---AIQWWKGLESLTVP  158 (307)
Q Consensus        85 l~~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~  158 (307)
                      +...+...+ .....+++|+++.+..++++....++.   .+++|++|+|+++. +++.+...   .+...+.|++|+|+
T Consensus        24 ~~~~l~~~l-~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           24 VEETLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             HHHHHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHH-hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECc
Confidence            444444444 346789999998765888887776655   47899999999775 88887554   45667899999999


Q ss_pred             CCCCCHHHHHHHHh---cCCCCceEEe--ecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHH
Q 037159          159 FISNASSIIQVIGA---NCKNFSMLKV--MFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNA  215 (307)
Q Consensus       159 ~~~~~~~~l~~i~~---~c~~L~~L~l--~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~  215 (307)
                      +|.+++.+...++.   .+++|++|++  ++. ++++++..++   ...++|++|+|++|.+++.+
T Consensus       102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          102 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            99999998888764   4578999999  555 7787766664   35689999999999998876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.90  E-value=1.6e-08  Score=90.44  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             CCCccEEEeccCCC--CCHHHHHHHHhhC-CCccEEecCCCCCCCHH---HHHHHHhc-CCCCCeEEecCCCCCHHHHHH
Q 037159           97 CKTVKRLIFNYSIY--LKDEHLVYAATRF-PMVKHLALPPCNEITVD---GFRSAIQW-WKGLESLTVPFISNASSIIQV  169 (307)
Q Consensus        97 ~~~l~~L~l~~~~~--~~d~~l~~i~~~~-~~L~~L~L~~~~~~~~~---~l~~~~~~-~~~L~~L~L~~~~~~~~~l~~  169 (307)
                      ..+++.|+++.+..  .....+......+ ++|+.|+|+++. +++.   .+...+.. +++|++|+|++|.+++.....
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence            35677777766542  1222333333333 667777777654 3332   23333334 347777777777654433222


Q ss_pred             HH---hcCC-CCceEEeecc-C---CHHHHHHHHhcCC-CCCEEEecCCCCCHHHHHHH---HHc-CCCCcEEeccCCcC
Q 037159          170 IG---ANCK-NFSMLKVMFS-F---DLDFAMSLFMSIP-ELKVLSLRSSIVDKNALNLI---LTL-MGSLEALNISHCLL  236 (307)
Q Consensus       170 i~---~~c~-~L~~L~l~~~-~---~~~~~~~l~~~~p-~L~~L~L~~~~it~~~l~~l---~~~-~~~L~~L~l~~C~~  236 (307)
                      ++   ...+ +|++|+++++ +   ....+......+| +|++|+|++|.+++.+...+   +.. +++|++|++++|..
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            22   2233 6777777654 2   2222222223443 77777777777665443322   222 35777777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.89  E-value=4.9e-10  Score=87.23  Aligned_cols=129  Identities=17%  Similarity=0.181  Sum_probs=60.2

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.++++.+.. ++..+......+++|+.|+++++. ++..   ..+..+++|+.|++++|.++.. +......+++|
T Consensus        17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred             ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence            3455565554332 211111122345666666666543 3321   3344566666666666655332 22333345666


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHH--HHHHHcCCCCcEEecc
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNAL--NLILTLMGSLEALNIS  232 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~~~L~~L~l~  232 (307)
                      +.|+++++ +.+.........+|+|++|++++|.++...-  ...+..+|+|++|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666544 2221111122355666666666665443221  1344556666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.85  E-value=5.8e-10  Score=86.82  Aligned_cols=111  Identities=16%  Similarity=0.118  Sum_probs=83.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+++++. +++..+...+..+++|+.|++++|.++..   .....+++|+.|+++++ +... .......+++|
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence            4789999999875 55333444567899999999999987544   23345799999999876 3321 23334469999


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|++++|.+++-.....+..+++|++|++++|....
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            9999999999875544567889999999999996543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.84  E-value=1.4e-07  Score=84.38  Aligned_cols=139  Identities=18%  Similarity=0.187  Sum_probs=95.9

Q ss_pred             CccEEEeccCCCCC--HHHHHHHHhh-CCCccEEecCCCCCCC---HHHHHHHHhcC-CCCCeEEecCCCCCHHHHHHHH
Q 037159           99 TVKRLIFNYSIYLK--DEHLVYAATR-FPMVKHLALPPCNEIT---VDGFRSAIQWW-KGLESLTVPFISNASSIIQVIG  171 (307)
Q Consensus        99 ~l~~L~l~~~~~~~--d~~l~~i~~~-~~~L~~L~L~~~~~~~---~~~l~~~~~~~-~~L~~L~L~~~~~~~~~l~~i~  171 (307)
                      ++++|+++.+..-.  ...+..+... +++|++|+|+++. ++   ...+...+..+ ++|++|+|++|.+++.....++
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            79999998764322  2334443333 4999999999875 44   34566666677 8999999999987555444443


Q ss_pred             h---c-CCCCceEEeecc-CCHH---HHHHHHhcCC-CCCEEEecCCCCCHHH---HHHHHHcCC-CCcEEeccCCcCCC
Q 037159          172 A---N-CKNFSMLKVMFS-FDLD---FAMSLFMSIP-ELKVLSLRSSIVDKNA---LNLILTLMG-SLEALNISHCLLGQ  238 (307)
Q Consensus       172 ~---~-c~~L~~L~l~~~-~~~~---~~~~l~~~~p-~L~~L~L~~~~it~~~---l~~l~~~~~-~L~~L~l~~C~~i~  238 (307)
                      .   . +++|++|+++++ +++.   .+......++ +|++|+|++|.+++.+   +...+..++ +|++|++++|..-+
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            3   2 579999999876 3332   2222223555 9999999999977544   445556674 99999999997543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.79  E-value=2.7e-10  Score=90.55  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK  175 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~  175 (307)
                      ...+++.|+++.+.. ++..+......+++|+.|+++++. ++..   ..+..+++|+.|++++|.+... +..+...++
T Consensus        22 ~~~~L~~L~l~~n~l-~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKS-NDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCBC-BTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCT
T ss_pred             CcccCCEEECCCCCC-ChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCC
Confidence            346788888877543 211122223457889999998775 4432   4566788999999999887443 344455678


Q ss_pred             CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHH--HHHHHcCCCCcEEeccCCcCCCc
Q 037159          176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNAL--NLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l--~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +|+.|+++++ +.+.........+++|++|++++|.++....  ...+..+|+|++|++++|...+.
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9999999876 3321111223478999999999998664321  24667889999999998876553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=9e-08  Score=85.62  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHh-hCCCccEEecCCCC-----CCCHHHHHHHH--hcCCCCCeEEecCCCCCHHHHH
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAAT-RFPMVKHLALPPCN-----EITVDGFRSAI--QWWKGLESLTVPFISNASSIIQ  168 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~-~~~~L~~L~L~~~~-----~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~l~  168 (307)
                      ..+|++|.+.. ..++++.+..++. .+|+|++|+|+.+.     .....++..++  ..+|+|+.|+|.+|.+++....
T Consensus       192 ~~~L~~L~L~~-~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIIS-GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEEC-SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCCcEEEEec-CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            46899999976 4578888888875 68999999986321     11112223333  3589999999999998777766


Q ss_pred             HHHh--cCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          169 VIGA--NCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       169 ~i~~--~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .++.  .+|+|++|+|+.+ +++.++.++.   ..+++|+.|+|++|.++++++..+.+.+  ...++++.-.
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            6764  4689999999766 6777777765   4579999999999999999998888755  3446665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.68  E-value=1.3e-09  Score=86.59  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=82.0

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      ..++|+.|+++++. +++..+...+..+++|+.|++++|.+...  . ....+++|+.|+++++ +... .......+++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGG-LDMLAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence            34789999999875 54333444467889999999999987543  2 2345799999999876 2221 2333446999


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|+|++|.+++-.....+..+++|++|++++|....
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            99999999998763322345679999999999997654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.9e-09  Score=91.85  Aligned_cols=49  Identities=24%  Similarity=0.441  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecCc
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNV   59 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~~   59 (307)
                      .|++||+||+..||+||+++|+++ +++|||+||.++.||.||+++-.+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhcc
Confidence            377899999999999999999998 9999999999999999999886543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.64  E-value=1.2e-08  Score=83.16  Aligned_cols=127  Identities=15%  Similarity=0.127  Sum_probs=85.1

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.++++.+..-+-..    ...+++|+.|+++++. ++.-   ..+..+++|++|++++|.+++.....++ .+++|+
T Consensus        45 ~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~  115 (197)
T 4ezg_A           45 SLTYITLANINVTDLTG----IEYAHNIKDLTINNIH-ATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLT  115 (197)
T ss_dssp             TCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCC-CSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCC
T ss_pred             CccEEeccCCCccChHH----HhcCCCCCEEEccCCC-CCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCC
Confidence            57777777644322111    3457888999888773 4332   2456788899999988877654444443 468888


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+++++ +.+.....+. .+++|++|++++|. +++-.   .+..+++|+.|++++|...+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             EEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC
T ss_pred             EEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC
Confidence            8888766 4443344443 78889999998887 76532   35678889999998886543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.61  E-value=1.2e-06  Score=71.07  Aligned_cols=122  Identities=11%  Similarity=0.114  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHHh---cCCCCceEEeecc-
Q 037159          113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIGA---NCKNFSMLKVMFS-  185 (307)
Q Consensus       113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~~---~c~~L~~L~l~~~-  185 (307)
                      ++.+..+...-+.|++|+|++...+.+.|...+   +..-..|++|+|++|.+++.+..+|++   .-+.|++|+|+.. 
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            456777777778899999986556888775554   445568999999999888887766663   3478999999765 


Q ss_pred             CCHHHHHHHHhcC---CCCCEEEecCC---CCCHHH---HHHHHHcCCCCcEEeccCC
Q 037159          186 FDLDFAMSLFMSI---PELKVLSLRSS---IVDKNA---LNLILTLMGSLEALNISHC  234 (307)
Q Consensus       186 ~~~~~~~~l~~~~---p~L~~L~L~~~---~it~~~---l~~l~~~~~~L~~L~l~~C  234 (307)
                      +++.++.++++.+   ..|++|+|+++   .+.+++   +...+..-+.|+.|+++.+
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            7888888887544   47999999864   578776   4455566789999999754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.56  E-value=9.7e-08  Score=84.56  Aligned_cols=128  Identities=12%  Similarity=0.077  Sum_probs=91.5

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK  175 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~  175 (307)
                      ...+++.+.+..+.......    ...+++|+.|+++++. ++...  . +..+++|++|++++|.++..  .. ...++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~  265 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIGTNQISDI--NA-VKDLT  265 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCC--GG-GTTCT
T ss_pred             CCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECCCCccCCC--hh-HhcCC
Confidence            34578888887654433222    3568999999999875 43321  1 67899999999999987542  22 34679


Q ss_pred             CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|+.|+++++ +.+.  .. ...+++|++|++++|.++..... .+..+++|++|++++|...+
T Consensus       266 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             TCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCC
T ss_pred             CcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccc
Confidence            9999999876 3221  12 35789999999999998875554 35679999999999998544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.53  E-value=1.7e-08  Score=82.33  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=92.3

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.|.++.+. +++  +.. ...+++|+.|+++++. ++.... ..+..+++|+.|++++|.+++.....++ .+++
T Consensus        65 l~~L~~L~l~~n~-~~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~  137 (197)
T 4ezg_A           65 AHNIKDLTINNIH-ATN--YNP-ISGLSNLERLRIMGKD-VTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKIN-TLPK  137 (197)
T ss_dssp             CTTCSEEEEESCC-CSC--CGG-GTTCTTCCEEEEECTT-CBGGGS-CCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSS
T ss_pred             CCCCCEEEccCCC-CCc--chh-hhcCCCCCEEEeECCc-cCcccC-hhhcCCCCCCEEEecCCccCcHhHHHHh-hCCC
Confidence            3578899998763 322  112 2358999999999764 554222 2356799999999999998776666665 5799


Q ss_pred             CceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |+.|+++++  +.+.  .. ...+|+|++|++++|.+++-.   .+..+++|++|++++...
T Consensus       138 L~~L~L~~n~~i~~~--~~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          138 VNSIDLSYNGAITDI--MP-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCEEECCSCTBCCCC--GG-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC--
T ss_pred             CCEEEccCCCCcccc--Hh-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCccc
Confidence            999999876  3322  22 347999999999999988632   467799999999987653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.50  E-value=3.8e-08  Score=84.67  Aligned_cols=47  Identities=19%  Similarity=0.415  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHhcCChHHHh-hHHhhhhHHHHHhcCCCCcceeee
Q 037159            9 RNWQNMHYDILVKIFMALRVTDLI-FAVSKVCSSWRAASRDPVLWETLD   56 (307)
Q Consensus         9 ~~w~~LP~eiL~~If~~L~~~d~~-~~~s~VCk~Wr~~~~~p~lw~~i~   56 (307)
                      .....||+|+|.+||++|+.++++ + |++|||+|+.++.+|.+|+..-
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~   96 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKC   96 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHh
Confidence            357899999999999999999999 7 9999999999999999998653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.41  E-value=5.2e-07  Score=79.80  Aligned_cols=126  Identities=16%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             cCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCC
Q 037159           96 SCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCK  175 (307)
Q Consensus        96 s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~  175 (307)
                      ...+++.++++.+....-..    ...+++|+.|+++++. ++....   +..+++|++|++++|.++....   ...++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~  243 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP---LANLS  243 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred             cCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence            35688999988765433222    3568999999999775 433211   6789999999999998743222   45679


Q ss_pred             CCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          176 NFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       176 ~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|++|+++++ +...  .. ...+++|++|++++|.+++-   ..+..+++|+.|++++|....
T Consensus       244 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             TCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG
T ss_pred             CCCEEECCCCccCCC--hh-HhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC
Confidence            9999999876 2221  12 34789999999999997763   346789999999999996543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.38  E-value=5e-08  Score=78.00  Aligned_cols=131  Identities=10%  Similarity=0.019  Sum_probs=82.9

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.+.+..+..-.   +..+....++|+.|+|+++. ++.  + ..+..+++|+.|++++|.++.-. ..+...+++
T Consensus        18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N~-l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   89 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDNE-IRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD   89 (176)
T ss_dssp             TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSSC-CCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCCC-CCc--c-cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence            3467777777653321   12344445689999998764 443  2 34567888999999988764221 122245688


Q ss_pred             CceEEeecc-CCHHH-HHHHHhcCCCCCEEEecCCCCCHH--HHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS-FDLDF-AMSLFMSIPELKVLSLRSSIVDKN--ALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~-~~~~~-~~~l~~~~p~L~~L~L~~~~it~~--~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |+.|++++. +.+.. +..+ ..+++|++|++++|.++..  .-..++..+|+|+.||++++..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999998765 32211 1122 3788999999998886532  1123567789999999887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.32  E-value=6.3e-07  Score=77.67  Aligned_cols=122  Identities=15%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+..-.-..    ...+++|+.|+++++. ++.  +. .+..+++|++|++++|.+..-  ..+ ..+++|
T Consensus        68 ~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~i~~~--~~l-~~l~~L  136 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKD--LS-SLKDLKKLKSLSLEHNGISDI--NGL-VHLPQL  136 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCC--GG-GGTTCTTCCEEECTTSCCCCC--GGG-GGCTTC
T ss_pred             CCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCC--Ch-hhccCCCCCEEECCCCcCCCC--hhh-cCCCCC
Confidence            455566655543222111    2345666666666543 322  11 144566666666666655331  122 234666


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +.|+++++ +...  .. ...+++|++|++++|.+++..-   +..+++|++|++++|..
T Consensus       137 ~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred             CEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcC
Confidence            66666544 1111  11 2356666666666666543221   44566666666666643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.32  E-value=6.9e-08  Score=77.20  Aligned_cols=110  Identities=15%  Similarity=0.007  Sum_probs=77.8

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+++++. ++.  +..+....++|+.|++++|.++.-  ..+ ..+++|+.|+++++ +... ...+...+|+
T Consensus        17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRICRI-GEGLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred             CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence            36799999999875 542  333444456999999999987542  222 45789999999876 2211 1122247899


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|+|++|.+++-.-...+..+++|+.|+++++...+
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            99999999998653211245679999999999997654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.31  E-value=8.9e-06  Score=65.89  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             HHHHHHHHhcCCCCCeEEecCC-CCCHHHHHHHHhc---CCCCceEEeecc-CCHHHHHHHHh---cCCCCCEEEecCCC
Q 037159          139 VDGFRSAIQWWKGLESLTVPFI-SNASSIIQVIGAN---CKNFSMLKVMFS-FDLDFAMSLFM---SIPELKVLSLRSSI  210 (307)
Q Consensus       139 ~~~l~~~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~---c~~L~~L~l~~~-~~~~~~~~l~~---~~p~L~~L~L~~~~  210 (307)
                      ++.+..+...-+.|++|+|+++ .+++.+...+++.   -..|+.|+|+++ ++|.++.++++   .-..|++|+|++|.
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            4567778888899999999986 8888887777643   368999999876 88888777754   45799999999999


Q ss_pred             CCHHHHHHHHHcC---CCCcEEeccCCcC
Q 037159          211 VDKNALNLILTLM---GSLEALNISHCLL  236 (307)
Q Consensus       211 it~~~l~~l~~~~---~~L~~L~l~~C~~  236 (307)
                      |+++|...|++.+   +.|++|+|+++.+
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence            9999999888775   6799999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.27  E-value=3e-08  Score=87.57  Aligned_cols=109  Identities=17%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHH--------hcCCCCceEEeecc-CCHHHHHH
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIG--------ANCKNFSMLKVMFS-FDLDFAMS  193 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~--------~~c~~L~~L~l~~~-~~~~~~~~  193 (307)
                      +++|+.|+|+++. ++  .+...+..+++|++|++++|......-..++        ..+++|+.|+++++ +. .....
T Consensus       126 l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~  201 (328)
T 4fcg_A          126 FAGLETLTLARNP-LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS  201 (328)
T ss_dssp             GTTCSEEEEESCC-CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred             cCCCCEEECCCCc-cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence            4556666655443 32  2222344555566666555432111101110        12455555555443 11 00011


Q ss_pred             HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       194 l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                       ...+++|++|+|++|.++.  +..-+..+++|++|++++|....
T Consensus       202 -l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          202 -IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALR  243 (328)
T ss_dssp             -GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCC
T ss_pred             -hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchh
Confidence             2356666666666666542  22224456666666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.27  E-value=8.4e-07  Score=77.47  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+++++. ++.  +. .+..+++|++|++++|.++....   ...+++|+.|+++++ +.+...   ...+++
T Consensus       105 ~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~  174 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQ-ITD--VT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP---LANLSK  174 (308)
T ss_dssp             TCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred             CCCCCCEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh---hcCCCC
Confidence            35566666666543 222  11 14456666666666665422111   234566666666554 221111   235677


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|++++|.+++-.  . +..+++|++|++++|....
T Consensus       175 L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          175 LTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCCCB
T ss_pred             CCEEECCCCccCcCh--h-hcCCCCCCEEEccCCccCc
Confidence            777777777655322  1 4566777777777765443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.26  E-value=9.5e-07  Score=77.14  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP  199 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p  199 (307)
                      ..+++|+.|+|+++. ++.-   ..+..+++|++|++++|.++..  .. ...+++|+.|+++++ +.....   ...++
T Consensus        82 ~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~  151 (308)
T 1h6u_A           82 KNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISP---LAGLT  151 (308)
T ss_dssp             TTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCT
T ss_pred             ccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcCcc---ccCCC
Confidence            345566666665543 2221   1234556666666666554321  11 234456666666544 111100   23556


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +|++|++++|.+++-.  . +..+++|+.|++++|..
T Consensus       152 ~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          152 NLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             TCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC
T ss_pred             CccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc
Confidence            6666666666554311  1 34556666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.22  E-value=9.9e-07  Score=84.24  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=16.3

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|++|+|++|.+++-   .-+..+++|+.|+|++|.
T Consensus       173 ~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             TCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred             cCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence            445555555555544431   113334555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.20  E-value=1.6e-06  Score=75.11  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.+.++.+..-+-..    ...+++|+.|+|+++. ++.  +.. +..+++|+.|++++|.+..  +.. ...+++|+
T Consensus        47 ~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~  115 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNK-LTD--IKP-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLK  115 (291)
T ss_dssp             TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCC
T ss_pred             cccEEEccCCCcccChh----HhcCCCCCEEEccCCc-cCC--Ccc-cccCCCCCEEECCCCcCCC--Chh-hccCCCCC
Confidence            57788877654322221    3458999999999875 443  122 6789999999999998754  222 35679999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+++++ +.+.  ..+ ..+++|++|++++|.++.-   ..+..+++|+.|++++|...+
T Consensus       116 ~L~L~~n~i~~~--~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EEECTTSCCCCC--GGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC
T ss_pred             EEECCCCcCCCC--hhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc
Confidence            9999876 3221  223 4789999999999997763   346779999999999996544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.19  E-value=7.2e-08  Score=82.67  Aligned_cols=15  Identities=13%  Similarity=-0.081  Sum_probs=7.4

Q ss_pred             cCCCCCeEEecCCCC
Q 037159          148 WWKGLESLTVPFISN  162 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~  162 (307)
                      .+++|++|++++|.+
T Consensus       107 ~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A          107 KLTNLKELVLVENQL  121 (272)
T ss_dssp             TCTTCCEEECTTSCC
T ss_pred             CCcCCCEEECCCCcC
Confidence            445555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.18  E-value=9.6e-07  Score=84.34  Aligned_cols=125  Identities=18%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+|+.|+++.+..-.-..    ...+++|+.|+|+++. ++.  + ..+..+++|+.|+|++|.+..  +.. ...+++
T Consensus        64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~L~~L~Ls~N~l~~--l~~-l~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKD--L-SSLKDLKKLKSLSLEHNGISD--ING-LVHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--C-TTSTTCTTCCEEECTTSCCCC--CGG-GGGCTT
T ss_pred             CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCC--C-hhhccCCCCCEEEecCCCCCC--Ccc-ccCCCc
Confidence            4678899988765432221    4568999999999875 443  1 145689999999999998754  223 346799


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|+|+++ +...  .. ...+++|+.|+|++|.++...-   +..+++|+.|+|++|..-.
T Consensus       133 L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB
T ss_pred             cCEEECCCCccCCc--hh-hcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCC
Confidence            999999876 3221  22 3489999999999999775322   6789999999999996544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.16  E-value=8.6e-08  Score=78.18  Aligned_cols=106  Identities=19%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+|+++. ++.  +. .+..+++|+.|++++|.+..  +......+++|+.|+++++ +...  ..+ ..+++
T Consensus        46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~~-~~l~~  116 (198)
T 1ds9_A           46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SGI-EKLVN  116 (198)
T ss_dssp             HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HHH-HHHHH
T ss_pred             cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Ccc-ccCCC
Confidence            35667777776543 222  11 33456677777777665431  1122233456777777554 2221  122 24567


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |++|++++|.+++-.....+..+++|++|+++++..
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            777777777666433223445567777777766643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.16  E-value=8e-08  Score=84.82  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             hcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC
Q 037159           95 LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC  174 (307)
Q Consensus        95 ~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c  174 (307)
                      ....+++.|++..+..-.  .-..+ ..+++|+.|+|+++. ++  .+...+..+++|++|+|++|.+.  .+..-...+
T Consensus        78 ~~~~~l~~L~L~~n~l~~--lp~~l-~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l  149 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLPQ--FPDQA-FRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPLR--ALPASIASL  149 (328)
T ss_dssp             HTSTTCCEEEEESSCCSS--CCSCG-GGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGC
T ss_pred             ccccceeEEEccCCCchh--cChhh-hhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCccc--cCcHHHhcC
Confidence            345788899987754321  01112 237899999999765 44  34444678999999999999875  222223567


Q ss_pred             CCCceEEeecc-CCHHHHHHH--------HhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          175 KNFSMLKVMFS-FDLDFAMSL--------FMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       175 ~~L~~L~l~~~-~~~~~~~~l--------~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|+.|+++++ ........+        ...+++|++|+|++|.++  .+..-+..+++|++|++++|....
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc
Confidence            99999999874 111101111        124899999999999977  343446789999999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.16  E-value=5e-07  Score=78.97  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             CCccEEEeccCCCCCH-HHHHHHHh-hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH--HHHHHH-h
Q 037159           98 KTVKRLIFNYSIYLKD-EHLVYAAT-RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS--IIQVIG-A  172 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d-~~l~~i~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~l~~i~-~  172 (307)
                      .+++.|+++.+..... ..+..+.. ..++|+.|+|+++. ++.. ....+..+++|++|++++|.+...  ....+. .
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            3566666665432221 12222211 13677777777553 2211 012234667777777777765432  122221 4


Q ss_pred             cCCCCceEEeecc-CC--HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          173 NCKNFSMLKVMFS-FD--LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       173 ~c~~L~~L~l~~~-~~--~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .+++|++|+++++ +.  ......+...+++|++|+|++|.++...-......+++|++|++++|..-
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            4567777777655 22  12233344466777777777776654321112233567777777776544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.16  E-value=4.7e-07  Score=79.06  Aligned_cols=138  Identities=12%  Similarity=0.038  Sum_probs=82.0

Q ss_pred             CCccEEEeccCCCCCHHHHHHHH-hhCCCccEEecCCCCCCCHHH--HH-HHHhcCCCCCeEEecCCCCCHHHHHHHHhc
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAA-TRFPMVKHLALPPCNEITVDG--FR-SAIQWWKGLESLTVPFISNASSIIQVIGAN  173 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~-~~~~~L~~L~L~~~~~~~~~~--l~-~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~  173 (307)
                      .++++++++.+...... -..+. ...++|+.|+|+++. ++...  +. ..+..+++|++|+|++|.+.......+ ..
T Consensus        91 ~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~  167 (310)
T 4glp_A           91 SRLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RA  167 (310)
T ss_dssp             SCCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CC
T ss_pred             CceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-cc
Confidence            35888888765432110 00111 446788888888765 33210  11 122378888888888887633221222 34


Q ss_pred             CCCCceEEeecc-CCHHHHHH---HHhcCCCCCEEEecCCCCC--HHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          174 CKNFSMLKVMFS-FDLDFAMS---LFMSIPELKVLSLRSSIVD--KNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       174 c~~L~~L~l~~~-~~~~~~~~---l~~~~p~L~~L~L~~~~it--~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +++|++|++++. ........   ....+|+|++|+|++|.++  ......++..+++|++|+++++....
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            678888888776 33322111   1136788999999988876  33333456778889999998887554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.15  E-value=8.7e-07  Score=82.86  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.++++.+.. ++.....+ ..+++|+.|+|+++....-..+...+..+++|+.|++++|.+....-......+++|
T Consensus       324 ~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLL-TDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCC-CTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CcccEEEeECCcc-Chhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4566666655432 22111111 345677777777654222233444556677777777777665331111112334677


Q ss_pred             ceEEeecc-CCHHHHHHHHhcC-CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSI-PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~-p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +.|+++++ +...    +...+ ++|+.|+|++|.++  .+..-+..+++|++|++++|...+
T Consensus       402 ~~L~Ls~N~l~~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          402 LSLNMSSNILTDT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CEEECCSSCCCGG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CEEECcCCCCCcc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCc
Confidence            77777654 2221    11223 57788888777766  333323367888888888875443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.14  E-value=1e-07  Score=83.28  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             CCccEEEeccCCCCCH---HHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH-HHHHH--H
Q 037159           98 KTVKRLIFNYSIYLKD---EHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS-IIQVI--G  171 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d---~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i--~  171 (307)
                      .+++.|+++.+.....   -....+. .+++|+.|+|+++. ++.. ....+..+++|++|+|++|.+... .+...  .
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             CCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            4566777766543221   1111122 57778888887654 3211 112334677788888887765432 22111  1


Q ss_pred             hcCCCCceEEeecc-CC--HHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcC---CCCcEEeccCCcCCC
Q 037159          172 ANCKNFSMLKVMFS-FD--LDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLM---GSLEALNISHCLLGQ  238 (307)
Q Consensus       172 ~~c~~L~~L~l~~~-~~--~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~---~~L~~L~l~~C~~i~  238 (307)
                      ..+++|++|+++++ +.  ......+...+++|++|+|++|.++...-.. +..+   ++|++|++++|....
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~  265 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQ  265 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCS
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCc
Confidence            34577778877665 22  2223333446778888888877765421111 1223   677788877776543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.14  E-value=4.6e-07  Score=82.95  Aligned_cols=47  Identities=28%  Similarity=0.536  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCC-CCcceeeecC
Q 037159           11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRD-PVLWETLDLN   58 (307)
Q Consensus        11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~-p~lw~~i~l~   58 (307)
                      +..||+|++.+||+||+.+++++ +++|||+|++++.+ +.+|+.+-+.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~   62 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLIS   62 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            56799999999999999999999 99999999999988 8999987653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.12  E-value=1.3e-06  Score=74.58  Aligned_cols=122  Identities=19%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.++++.+..-+-.   . ...+++|+.|+|+++. ++.-  .. +..+++|+.|++++|.++.  +..+..  ++|+
T Consensus        42 ~L~~L~l~~n~i~~l~---~-l~~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~  109 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLA---G-MQFFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLS  109 (263)
T ss_dssp             TCSEEECTTSCCCCCT---T-GGGCTTCCEEECCSSC-CCCC--GG-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCC
T ss_pred             cCcEEECcCCCcccch---H-HhhCCCCCEEECCCCc-cCCC--hh-hccCCCCCEEECCCCccCC--cCcccc--Cccc
Confidence            5666666554322111   1 2346777777777654 3321  11 5567777777777776532  111111  6677


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+++++ +...  .. ...+++|++|+|++|.+++-.   .+..+++|+.|++++|..-.
T Consensus       110 ~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          110 RLFLDNNELRDT--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EEECCSSCCSBS--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCB
T ss_pred             EEEccCCccCCC--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcc
Confidence            7777654 2211  11 235677777777777665421   24556777777777665433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.12  E-value=1e-08  Score=89.46  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=43.5

Q ss_pred             hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159          147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS  225 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~  225 (307)
                      ..+++|++|++++|.+...... ....+++|++|++++. +...........+++|++|++++|.++.... ..+..+++
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  200 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS  200 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred             hhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCC
Confidence            3455555555555543211111 1123456666666543 1110011112356677777777776554211 22345677


Q ss_pred             CcEEeccCCcCCC
Q 037159          226 LEALNISHCLLGQ  238 (307)
Q Consensus       226 L~~L~l~~C~~i~  238 (307)
                      |++|+++++...+
T Consensus       201 L~~L~L~~N~l~~  213 (306)
T 2z66_A          201 LQVLNMSHNNFFS  213 (306)
T ss_dssp             CCEEECTTSCCSB
T ss_pred             CCEEECCCCccCc
Confidence            7777777765443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.12  E-value=3.3e-07  Score=78.48  Aligned_cols=128  Identities=18%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.+.+..+...+-..    ...+++|+.|+++++. ++.  + ..+..+++|++|++++|.++...- .....+++|
T Consensus        41 ~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~-l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNK-LHD--I-SALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL  111 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSC-CCC--C-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             cceeeeeeCCCCcccccc----cccCCCCcEEECCCCC-CCC--c-hhhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence            367788776654322221    2458999999999875 443  2 246689999999999998642211 122456889


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      ++|+++++ +... .......+++|++|++++|.++.-. ...+..+++|+.|++++|..
T Consensus       112 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          112 KELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             CEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCc
Confidence            99998765 2211 1111235677777777777655211 12234567777777777643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.11  E-value=2.7e-06  Score=78.50  Aligned_cols=58  Identities=12%  Similarity=0.009  Sum_probs=26.0

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN  162 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  162 (307)
                      ..+++.+++..+....-.   . ...+++|+.|+++++. ++..  .. +..+++|++|++++|.+
T Consensus       220 l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDIG---T-LASLTNLTDLDLANNQ-ISNL--AP-LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCC
T ss_pred             cCCCCEEECCCCCcccch---h-hhcCCCCCEEECCCCc-cccc--hh-hhcCCCCCEEECCCCcc
Confidence            345666666554322211   1 1235566666665543 2211  00 34455555555555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.10  E-value=8.2e-07  Score=81.01  Aligned_cols=47  Identities=19%  Similarity=0.399  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL   57 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l   57 (307)
                      -++.||+|++..||+||+..++++ +++|||+|+.++.++.+|+.+-.
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhee
Confidence            478899999999999999999998 99999999999999999997643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.09  E-value=5.2e-06  Score=72.44  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=86.4

Q ss_pred             CCCccEEEeccCCCCCHHHHHHH-HhhCCCccEEecCCCCCCCHH--HHHHHHh-cCCCCCeEEecCCCCCHHHHHHHHh
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYA-ATRFPMVKHLALPPCNEITVD--GFRSAIQ-WWKGLESLTVPFISNASSIIQVIGA  172 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i-~~~~~~L~~L~L~~~~~~~~~--~l~~~~~-~~~~L~~L~L~~~~~~~~~l~~i~~  172 (307)
                      ..++++|+++.+..... .-..+ ...+++|+.|+|+++. ++..  .+..+.. .+++|++|++++|.+.......+ .
T Consensus        94 l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~  170 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGT-APPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-R  170 (312)
T ss_dssp             TSCCCEEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-C
T ss_pred             cCCccEEEccCCcccch-hHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-c
Confidence            45777887766432210 00001 2456888888888764 3321  2222211 13889999998887643222223 3


Q ss_pred             cCCCCceEEeecc-CCHH-H-HHHH-HhcCCCCCEEEecCCCCCH--HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          173 NCKNFSMLKVMFS-FDLD-F-AMSL-FMSIPELKVLSLRSSIVDK--NALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       173 ~c~~L~~L~l~~~-~~~~-~-~~~l-~~~~p~L~~L~L~~~~it~--~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .+++|+.|++++. +... . ...+ ...+++|++|+|++|.++.  .....+...+++|++|+++++....
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            5689999999876 3332 1 2222 1578999999999999873  3344566788999999999987554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.09  E-value=2.6e-07  Score=75.23  Aligned_cols=123  Identities=17%  Similarity=0.118  Sum_probs=85.5

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.|+++.+..-.   +. ....+++|+.|+++++. ++  .+......+++|+.|++++|.++.  +..+. .+++
T Consensus        47 l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~  116 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN  116 (198)
T ss_dssp             TTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred             CCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence            3578888887653322   11 22347899999999764 44  233445567899999999998855  23443 4589


Q ss_pred             CceEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHH---------HHHHHHHcCCCCcEEe
Q 037159          177 FSMLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKN---------ALNLILTLMGSLEALN  230 (307)
Q Consensus       177 L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~---------~l~~l~~~~~~L~~L~  230 (307)
                      |+.|++++. +.. .....+ ..+++|++|++++|.++..         ....++..+|+|+.||
T Consensus       117 L~~L~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCEEECCCCcCCchhHHHHH-hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999766 443 222333 4899999999999986543         2234578899999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.06  E-value=7.1e-07  Score=81.30  Aligned_cols=45  Identities=24%  Similarity=0.425  Sum_probs=41.7

Q ss_pred             CCCCCHH----HHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeee
Q 037159           11 WQNMHYD----ILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLD   56 (307)
Q Consensus        11 w~~LP~e----iL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~   56 (307)
                      ++.||+|    |+.+||+||+..++++ +++|||+|+.++.++.+|+.+-
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHH
Confidence            4569999    9999999999999998 9999999999999999999774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.04  E-value=3.4e-06  Score=77.83  Aligned_cols=125  Identities=14%  Similarity=0.086  Sum_probs=78.7

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.+++..+.......    ...+++|+.|+++++. ++..  .. +..+++|++|++++|.+....  . ...+++
T Consensus       242 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~  310 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQLEDIS--P-ISNLKN  310 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCCSCCG--G-GGGCTT
T ss_pred             CCCCCEEECCCCccccchh----hhcCCCCCEEECCCCc-cCcc--cc-ccCCCccCeEEcCCCcccCch--h-hcCCCC
Confidence            4578888887654332221    3457888888888764 3321  11 557888888888888753321  1 345688


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|+++++ +.+...   ...+++|+.|++++|.+++.   .-+..+++|+.|++++|....
T Consensus       311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCB
T ss_pred             CCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCc
Confidence            888888765 221111   24678888888888876653   234567888888888776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.04  E-value=1.1e-07  Score=77.99  Aligned_cols=132  Identities=11%  Similarity=-0.011  Sum_probs=83.9

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.|+++.+..- . ........+++|+.|+++++. ++.- ....+..+++|++|+++++.++... ......+++|+
T Consensus        29 ~l~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  103 (208)
T 2o6s_A           29 QTTYLDLETNSLK-S-LPNGVFDELTSLTQLYLGGNK-LQSL-PNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLK  103 (208)
T ss_dssp             TCSEEECCSSCCC-C-CCTTTTTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCcEEEcCCCccC-c-CChhhhcccccCcEEECCCCc-cCcc-ChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCC
Confidence            5677777664321 1 011112457899999999764 4321 1123467899999999998764211 11224568999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .|++++. +.... ......+++|++|+|++|.++... ...+..+++|++|+++++...
T Consensus       104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             EEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             EEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence            9999765 22111 112247899999999999876321 133567899999999998654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.02  E-value=8.7e-07  Score=82.87  Aligned_cols=134  Identities=13%  Similarity=0.198  Sum_probs=92.7

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.|.++.+....-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++......+   .++
T Consensus       347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~  422 (520)
T 2z7x_B          347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPR  422 (520)
T ss_dssp             CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTT
T ss_pred             CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhh---ccc
Confidence            457899999876654433444445678999999999875 4321001124567999999999998865432222   169


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL-ILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|+++++ +. .....+. .+++|++|+|++|.++.  +.. .+..+++|+.|+++++....
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence            999999876 33 1112233 79999999999999773  222 35678999999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.99  E-value=5.1e-07  Score=82.88  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHH-HHhcCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMS-LFMSIP  199 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~-l~~~~p  199 (307)
                      .+++|+.|+|+++..... .-...+..+++|++|+|++|.++......+ ..+++|++|+++++ +....... ....++
T Consensus        52 ~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             SCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred             cCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcc
Confidence            456677777765532110 001224456677777777665532221222 23566777777655 22211111 123566


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +|++|+|++|.++...-..++.++++|++|+++++...
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             cCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            77777777766553322223455677777777666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.98  E-value=1.4e-06  Score=74.24  Aligned_cols=124  Identities=11%  Similarity=0.062  Sum_probs=88.7

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.|+++.+..-+-..    ...+++|+.|+|+++. ++.  +..+. . ++|+.|++++|.++..  .. ...+++
T Consensus        62 l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~-l~~--l~~~~-~-~~L~~L~L~~N~l~~~--~~-l~~l~~  129 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNR-LKN--LNGIP-S-ACLSRLFLDNNELRDT--DS-LIHLKN  129 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSC-CSC--CTTCC-C-SSCCEEECCSSCCSBS--GG-GTTCTT
T ss_pred             CCCCCEEECCCCccCCChh----hccCCCCCEEECCCCc-cCC--cCccc-c-CcccEEEccCCccCCC--hh-hcCccc
Confidence            4578899988764332222    3568999999999875 432  11222 2 8999999999987542  22 346799


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|++++. +.+.  .. ...+++|++|++++|.+++.   ..+..+++|+.|+++++....
T Consensus       130 L~~L~Ls~N~i~~~--~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          130 LEILSIRNNKLKSI--VM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCEEECTTSCCCBC--GG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ccEEECCCCcCCCC--hH-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence            999999876 3322  12 34799999999999998865   446678999999999886543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.98  E-value=3.5e-08  Score=93.24  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .+++|++|+|++|.++.... ..+..+++|++|++++|
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             cccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCC
Confidence            34445555555444432111 11233455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.96  E-value=3.1e-07  Score=79.07  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=42.0

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      +++|+.|+++++. ++.. ....+..+++|++|+++++.+.......+ ..+++|+.|++++. +....... ...+++|
T Consensus       104 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L  179 (285)
T 1ozn_A          104 LGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERA-FRGLHSL  179 (285)
T ss_dssp             CTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECTTT-TTTCTTC
T ss_pred             CcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCHHH-hcCcccc
Confidence            4555555555443 2110 01123345555555555554321111111 23455555555443 11100001 1234555


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      ++|++++|.++.... ..+..+++|+.|+++++
T Consensus       180 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCH-hHccCcccccEeeCCCC
Confidence            555555554433211 11233455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=1.5e-06  Score=82.42  Aligned_cols=106  Identities=18%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ..|+.|+|+++. ++.  +.. +..+++|+.|+|++|.++  .+......+++|+.|++++. +..  +..+ ..+++|+
T Consensus       441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~  511 (567)
T 1dce_A          441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQ  511 (567)
T ss_dssp             TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCC
T ss_pred             cCceEEEecCCC-CCC--CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCc
Confidence            469999999764 443  333 678999999999999875  22222346799999999876 322  1233 4799999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|+|++|.++.......+..+++|+.|+++++....
T Consensus       512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            999999997753213345679999999999987654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.94  E-value=3.2e-07  Score=77.56  Aligned_cols=132  Identities=12%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+..-.-  .......+++|+.|+|+++. ++.. ....+..+++|++|+|+++.++.-. ......+++|
T Consensus        59 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  133 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTL--SAGVFDDLTELGTLGLANNQ-LASL-PLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKL  133 (251)
T ss_dssp             TTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             ccCCEEECCCCcCCcc--CHhHhccCCcCCEEECCCCc-cccc-ChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcc
Confidence            4566666655432110  00111345677777777553 3211 0122346677777777777653111 1112345677


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +.|++++. +..... .....+++|++|+|++|.++... ...+..+++|+.|+++++..
T Consensus       134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCB
T ss_pred             cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCce
Confidence            77777654 221111 11235677777777777755211 12345567777777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.93  E-value=4.4e-07  Score=83.31  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+|+++. ++.. ....+..+++|++|+++++.+...........+++|++|+++++ +.......+ ..+++|
T Consensus        29 ~~~l~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L  105 (455)
T 3v47_A           29 PAHVNYVDLSLNS-IAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANL  105 (455)
T ss_dssp             CTTCCEEECCSSC-CCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTC
T ss_pred             CCccCEEEecCCc-cCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccC
Confidence            3789999999764 4431 12345689999999999987632221222345799999999876 322112222 478999


Q ss_pred             CEEEecCCCCCHHHHH-HHHHcCCCCcEEeccCCcCCCc
Q 037159          202 KVLSLRSSIVDKNALN-LILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~-~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      ++|+|++|.++...+. ..+..+++|++|++++|.....
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  144 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI  144 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence            9999999998865443 2356789999999999976553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.89  E-value=3.8e-07  Score=78.16  Aligned_cols=16  Identities=25%  Similarity=0.443  Sum_probs=8.1

Q ss_pred             cCCCCCEEEecCCCCC
Q 037159          197 SIPELKVLSLRSSIVD  212 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it  212 (307)
                      .+++|++|++++|.++
T Consensus       147 ~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECCCCCCC
Confidence            4455555555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.88  E-value=9.5e-08  Score=91.12  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .+++|++|+|++|.++... ...+.++++|++|++++|...
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             TCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCC
Confidence            4566666666666654321 112345666777777666443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.87  E-value=9.2e-06  Score=76.30  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=16.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN  162 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  162 (307)
                      +++|+.|+|+++.-..-......+..+++|++|++++|.+
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            4455555555443111111112344455555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.86  E-value=2.2e-07  Score=88.51  Aligned_cols=16  Identities=25%  Similarity=0.484  Sum_probs=7.6

Q ss_pred             cCCCCCEEEecCCCCC
Q 037159          197 SIPELKVLSLRSSIVD  212 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it  212 (307)
                      .+|+|++|++++|.++
T Consensus       447 ~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFP  462 (606)
T ss_dssp             TCTTCCEEECTTCBCG
T ss_pred             CCCCCCEEECCCCCCC
Confidence            3444555555544443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.84  E-value=1.5e-06  Score=78.19  Aligned_cols=107  Identities=17%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+++++. +++.   ..+..+++|++|++++|.+.......+ ..+++|+.|+++++ +...  ......+|+|
T Consensus       225 ~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L  297 (390)
T 3o6n_A          225 NVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL--NLYGQPIPTL  297 (390)
T ss_dssp             CSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE--ECSSSCCTTC
T ss_pred             cccccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc--CcccCCCCCC
Confidence            4678888887664 3332   245677788888887776543222222 34577777777655 2110  0011356777


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|+|++|.++.  +..-+..+++|+.|++++|...+
T Consensus       298 ~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          298 KVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             CEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CEEECCCCccee--cCccccccCcCCEEECCCCccce
Confidence            777777777552  22223456777777777776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.84  E-value=1.1e-06  Score=73.20  Aligned_cols=132  Identities=10%  Similarity=-0.027  Sum_probs=82.8

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+..-.-  .......+++|+.|+|+++. ++.- -...+..+++|+.|+|++|.++... ......+++|
T Consensus        40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhh
Confidence            5788888876543221  00112357899999998765 3211 0123467899999999998764211 1122456899


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +.|++++. +. .....+ ..+++|++|+|++|.++.-.- ..+..+++|+.|++++....
T Consensus       115 ~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          115 KELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred             CeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence            99999765 22 111112 478999999999998663211 34567899999999887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.83  E-value=4.2e-07  Score=78.76  Aligned_cols=131  Identities=17%  Similarity=0.136  Sum_probs=69.6

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|.++.+..-.-..    ...+++|+.|+|+++. ++  .+...+..+++|+.|+++++.++......+ ..+++|
T Consensus        55 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~L  126 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGEL  126 (290)
T ss_dssp             TTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTTC
T ss_pred             CCCCEEECCCCccCcccC----CCCCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCcCcccCHHHH-cCCCCC
Confidence            456666665533211000    0346777777777653 33  122234567777888887776532111111 345777


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +.|++++. +... .......+++|+.|+|++|.++.- ...++..+++|+.|+++++...+
T Consensus       127 ~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          127 QELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCCc
Confidence            77777654 2110 111123567777777777775521 11233556777777777765443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.83  E-value=5.6e-07  Score=78.87  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      +++|+.|+|+++. ++......+...+++|++|++++|.++..  ... ..+++|+.|+++++ +... ... ...+++|
T Consensus       143 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l-~~~-~~~l~~L  216 (317)
T 3o53_A          143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFM-GPE-FQSAAGV  216 (317)
T ss_dssp             GSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEE-CGG-GGGGTTC
T ss_pred             cCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcc-hhh-hcccCcc
Confidence            4555555555442 33221222233455566666655554221  000 12455666666543 1110 001 2245666


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      ++|+|++|.++.  +...+..+++|+.|+++++...
T Consensus       217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred             cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence            666666666552  2222344566666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.83  E-value=1.3e-06  Score=73.75  Aligned_cols=133  Identities=13%  Similarity=0.032  Sum_probs=85.6

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      .++.|+++.+..-.-.  ......+++|+.|+|+++. ++.. ....+..+++|+.|+|+++.++.... .....+++|+
T Consensus        36 ~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLD  110 (251)
T ss_dssp             TCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCC
T ss_pred             CCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCc-CCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCC
Confidence            5667777664321110  0112357999999999764 4321 11235678999999999998642221 1224569999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|++++. +... .......+++|++|+|++|.++.-.- ..+..+++|++|+++++....
T Consensus       111 ~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          111 KLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             EEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred             EEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence            9999876 2211 11122468999999999998763211 235678999999999986554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.81  E-value=9e-07  Score=72.50  Aligned_cols=111  Identities=13%  Similarity=0.069  Sum_probs=75.4

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+++++. ++.. ....+..+++|++|+++++.+.... ......+++|++|++++. +... .......+++|
T Consensus        27 ~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCC
Confidence            4689999999764 4321 1123568899999999999864221 122245799999999866 2211 11122478999


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|++++|.++... ...+..+++|++|+++++...+
T Consensus       103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred             CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccce
Confidence            99999999876321 1234678999999999986543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.80  E-value=2e-06  Score=73.91  Aligned_cols=135  Identities=10%  Similarity=-0.056  Sum_probs=89.3

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.|++..+....-  .......+++|+.|+++++. ++.. ....+..+++|++|+++++.++......+ ..+++
T Consensus       104 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~  178 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNA-LQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHS  178 (285)
T ss_dssp             CTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTT
T ss_pred             CcCCCEEECCCCcCCEE--CHhHhhCCcCCCEEECCCCc-cccc-CHhHhccCCCccEEECCCCcccccCHHHh-cCccc
Confidence            35778888776543211  01112457899999999764 3321 11235678999999999998643221122 35799


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|++++. +.......+ ..+++|++|++++|.++.... ..+..+++|++|+++++....
T Consensus       179 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEEC
T ss_pred             cCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccC
Confidence            999999876 222112222 368999999999999775322 346789999999999987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.79  E-value=3.1e-05  Score=72.66  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=35.0

Q ss_pred             cCCCCCeEEecCCCCCHHHHHHH--HhcCCCCceEEeecc-CCHH-HHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcC
Q 037159          148 WWKGLESLTVPFISNASSIIQVI--GANCKNFSMLKVMFS-FDLD-FAMSLFMSIPELKVLSLRSSIVDKNALNLILTLM  223 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~~~~~l~~i--~~~c~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~  223 (307)
                      .+++|++|++++|.+.+......  ...+++|+.|+++++ +... ........+++|++|++++|.++  .+...+..+
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~  409 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWP  409 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhccc
Confidence            45555555555555444332221  123355555555443 1111 11112234555555555555443  111112233


Q ss_pred             CCCcEEeccCCc
Q 037159          224 GSLEALNISHCL  235 (307)
Q Consensus       224 ~~L~~L~l~~C~  235 (307)
                      ++|++|++++|.
T Consensus       410 ~~L~~L~Ls~N~  421 (549)
T 2z81_A          410 EKMRFLNLSSTG  421 (549)
T ss_dssp             TTCCEEECTTSC
T ss_pred             ccccEEECCCCC
Confidence            444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.79  E-value=2.9e-07  Score=80.13  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=62.8

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+++++. ++.. ....+..+++|++|+++++.+....+......+++|+.|+++++ +.......+ ..+++
T Consensus       124 ~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  200 (306)
T 2z66_A          124 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSS  200 (306)
T ss_dssp             TCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred             hccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCC
Confidence            46778888887654 2210 11234567777777777776543222223345577777777654 221111112 35677


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|+|++|.++..... .+..+++|++|++++|...+
T Consensus       201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB
T ss_pred             CCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc
Confidence            77777777775532111 13456777777777775443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.78  E-value=1.1e-06  Score=75.05  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+|+++. ++.-. ...+..+++|++|+++++.++...... ...+++|+.|++++. +.... ......+++
T Consensus        83 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~  158 (270)
T 2o6q_A           83 ELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLP-KGVFDKLTS  158 (270)
T ss_dssp             SCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTT
T ss_pred             CCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCcCCccC-HhHccCCcc
Confidence            35666666666543 22100 012345566666666665542211111 123456666666543 11100 011124556


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      |++|+|++|.++.-.. ..+..+++|++|+++++.
T Consensus       159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             cceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc
Confidence            6666666555432111 112345566666665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=4e-06  Score=83.22  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH-------hcCCCCCeEEecCCCCCHHHHHH
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI-------QWWKGLESLTVPFISNASSIIQV  169 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~~~~l~~  169 (307)
                      ..+|+.|.++.+.....  +......+++|+.|+|+++..++...+...+       ..+++|+.|+|++|.+.  .+..
T Consensus       490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~  565 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA  565 (876)
T ss_dssp             CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred             CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence            35677777766543221  0111234678888888766435542222222       34457888888877764  2222


Q ss_pred             --HHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC-CcEEeccCCcC
Q 037159          170 --IGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS-LEALNISHCLL  236 (307)
Q Consensus       170 --i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~-L~~L~l~~C~~  236 (307)
                        ....+++|+.|+++++ +.  .+.. ...+++|+.|+|++|.++  .+..-+..+++ |+.|++++|..
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~--~lp~-~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR--HLEA-FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC--BCCC-CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCC
T ss_pred             hhhhhcCCCCCEEECCCCCcc--cchh-hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCC
Confidence              2234577777777654 22  1112 235667777777776655  23222444566 66666666653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.76  E-value=2.5e-06  Score=80.70  Aligned_cols=110  Identities=20%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             hCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcC-
Q 037159          122 RFPMVKHLALPPCNEITV-DGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSI-  198 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~-  198 (307)
                      .+++|+.|+|+++. ++. ..+...+..+++|+.|++++|.++...-......+++|+.|+++++ +..    .+...+ 
T Consensus       375 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~  449 (562)
T 3a79_B          375 TLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLP  449 (562)
T ss_dssp             SCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG----GGGSSCC
T ss_pred             ccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc----chhhhhc
Confidence            35666666666543 332 1233334556666666666665432111111223456666666544 221    111233 


Q ss_pred             CCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          199 PELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       199 p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|+.|+|++|.++  .+..-+..+++|++|+++++...+
T Consensus       450 ~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          450 PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCC
Confidence            47777777777655  222222356777777777765543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.76  E-value=1.1e-06  Score=70.09  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+++++. ++.- ....+..+++|++|+++++.++...- .....+++|+.|++++. +... .......+++|+
T Consensus        28 ~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~  103 (177)
T 2o6r_A           28 SSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK  103 (177)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCcEEEeCCCc-ccEe-CHHHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence            578888887654 3310 11234567888888888887642111 11235688888888765 2211 111224688999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|++++|.++.- ...++..+++|++|+++++....
T Consensus       104 ~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          104 ELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECcCCcceEe-CHHHhcCCcccCEEEecCCCeec
Confidence            999999987621 11334668999999999886543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.76  E-value=8.1e-07  Score=81.76  Aligned_cols=132  Identities=19%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+|+.|+++.+..-.-  -......+++|+.|+|+++..+..-. ...+..+++|+.|+|++|.++..  .. ...+++
T Consensus       146 l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~  219 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESI--PSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVG  219 (452)
T ss_dssp             CTTCCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC--CC-CTTCTT
T ss_pred             cCCCCEEECCCCCccee--CHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc--cc-cccccc
Confidence            35788888876542210  01112357888888888765443211 11245677888888877765321  11 234567


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |+.|++++. +....... ...+++|+.|+|++|.++.... ..+.++++|+.|+|+++..
T Consensus       220 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          220 LEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred             ccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcC
Confidence            777777654 22111111 2356677777777766553211 1234566777777766643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.75  E-value=2.4e-06  Score=75.10  Aligned_cols=131  Identities=16%  Similarity=0.025  Sum_probs=67.5

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHH-HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDG-FRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      .+++.|.++.+....-  .......+++|+.|+++++. ++..+ ....+..+++|++|+++++.++.-.    ....++
T Consensus       121 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~  193 (330)
T 1xku_A          121 KTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPS  193 (330)
T ss_dssp             TTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTT
T ss_pred             ccccEEECCCCccccc--CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCC----cccccc
Confidence            4677787766432211  11223457888888888664 33211 1223456778888888777643200    011256


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      |++|++++. +.......+ ..+++|++|+|++|.++.... ..+..+++|++|++++|...
T Consensus       194 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS
T ss_pred             CCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc
Confidence            677766554 221111111 255666666666666543211 12344666666666666443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.74  E-value=5.9e-06  Score=78.30  Aligned_cols=81  Identities=12%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA  228 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~  228 (307)
                      ..|+.|+|++|.++.  +..+ ..+++|+.|+++++ +. .....+ ..+++|+.|+|++|.++.  +. -+..+++|+.
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN--VD-GVANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred             cCceEEEecCCCCCC--CcCc-cccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence            368888888887643  2233 44688888888765 22 111122 378888888888888764  33 3566888888


Q ss_pred             EeccCCcCCC
Q 037159          229 LNISHCLLGQ  238 (307)
Q Consensus       229 L~l~~C~~i~  238 (307)
                      |+++++...+
T Consensus       513 L~Ls~N~l~~  522 (567)
T 1dce_A          513 LLLCNNRLQQ  522 (567)
T ss_dssp             EECCSSCCCS
T ss_pred             EECCCCCCCC
Confidence            8888876544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.73  E-value=1.8e-06  Score=70.13  Aligned_cols=109  Identities=17%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+|+++. ++.  +...+..+++|+.|+|+++.++...-..+ ..+++|++|++++. +....... ...+++|+
T Consensus        31 ~~l~~L~L~~n~-i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRT-FDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSC-CCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTT-TTTCTTCC
T ss_pred             CCCCEEECCCCc-Cch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHH-hCCCCCCC
Confidence            578888888654 431  22356678889999998887643221122 34688899988765 22111111 23689999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|+|++|.++.-. ...+..+++|+.|++++....-
T Consensus       106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          106 LLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeec
Confidence            9999999876311 1234568999999998876543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.73  E-value=1.4e-07  Score=82.57  Aligned_cols=14  Identities=21%  Similarity=0.218  Sum_probs=6.7

Q ss_pred             cCCCCCeEEecCCC
Q 037159          148 WWKGLESLTVPFIS  161 (307)
Q Consensus       148 ~~~~L~~L~L~~~~  161 (307)
                      .+++|++|++++|.
T Consensus       123 ~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A          123 QIKTLVTLDFSYNA  136 (313)
T ss_dssp             GCTTCCEEECCSSE
T ss_pred             CCCCCCEEeCCCCc
Confidence            44444555544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.73  E-value=1.4e-06  Score=82.36  Aligned_cols=132  Identities=10%  Similarity=0.129  Sum_probs=87.4

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC-CC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC-KN  176 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c-~~  176 (307)
                      .+++.++++.+..-.-..+......+++|+.|+++++. ++...-...+..+++|++|++++|.++....    ... ++
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~  451 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPK  451 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTT
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCc
Confidence            46777777665432212223333568999999999775 3321001134568999999999998865332    223 69


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL-ILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~-l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|+++++ +. .-...+. .+++|++|+|++|.++.  +.. .+..+++|+.|+++++....
T Consensus       452 L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          452 VKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcCC
Confidence            999999876 22 1111223 78999999999999773  222 35678999999999987654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.71  E-value=3.2e-06  Score=80.66  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+|+++. ++..   ..+..+++|+.|+|++|.+.......+ ..+++|+.|+++++ +..  +......+|+|+
T Consensus       232 ~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~  304 (597)
T 3oja_B          232 VELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA--LNLYGQPIPTLK  304 (597)
T ss_dssp             SCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE--EECSSSCCTTCC
T ss_pred             CCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC--CCcccccCCCCc
Confidence            467777776554 3321   234566677777776666533222222 23466666666544 111  000112456666


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+|++|.++.  +..-+..+++|++|+|++|...+
T Consensus       305 ~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          305 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC
T ss_pred             EEECCCCCCCc--cCcccccCCCCCEEECCCCCCCC
Confidence            66666666541  22223445666666666665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.71  E-value=3.7e-06  Score=74.62  Aligned_cols=58  Identities=12%  Similarity=0.054  Sum_probs=28.4

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHH--HHhcCCCCCeEEecCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRS--AIQWWKGLESLTVPFI  160 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~  160 (307)
                      .+++.|+++.+..-.-  -......+++|+.|+|+++. ++.  +..  .+..+++|++|++++|
T Consensus       100 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~--l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNP-YKT--LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TTCCEEECCSSCCSSC--CHHHHTTCTTCSEEECTTCC-CSS--SCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCEEECCCCcCCcC--CHhHhCCCccCCEEECCCCC-Ccc--cCchhhhccCCCCcEEECCCC
Confidence            4566666655432110  11112346677777776553 221  111  2345666666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.70  E-value=1.3e-06  Score=81.35  Aligned_cols=37  Identities=8%  Similarity=0.142  Sum_probs=16.8

Q ss_pred             cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159          148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      .+++|+.|+|++|.++......+...+++|+.|++++
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            4455555555555443332333333344555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.70  E-value=1.6e-06  Score=82.65  Aligned_cols=130  Identities=18%  Similarity=0.174  Sum_probs=78.4

Q ss_pred             CccEEEeccCCC--CCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           99 TVKRLIFNYSIY--LKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        99 ~l~~L~l~~~~~--~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      .++.|+++.+..  +....+    ..+++|+.|+|+++. ++.- -...+..+++|++|+|++|.+..-... ....+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N~-i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~  125 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCE-IQTI-EDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSS  125 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCC-CCEE-CTTTTTTCTTCCEEECTTCCCCEECGG-GGTTCTT
T ss_pred             CCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCCc-CCCc-ChhHhcCCCCCCEEEccCCcCCCCCHH-HhcCCCC
Confidence            466676665432  111112    347888999888764 3310 012346788889999888876322111 2245688


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |++|+++++ +..-.... ...+++|++|+|++|.++...+......+++|++|+++++..
T Consensus       126 L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            888888765 22111111 236788888888888866433444556788888888888754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.69  E-value=1.3e-06  Score=85.94  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISN  162 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  162 (307)
                      ..+++.|+++.+......  .. ...+++|+.|+|+++. ++.. +...+..+++|++|++++|.+
T Consensus       199 l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l  259 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGI--PF-LGDCSALQHLDISGNK-LSGD-FSRAISTCTELKLLNISSNQF  259 (768)
T ss_dssp             CTTCCEEECCSSCCCSCC--CB-CTTCCSCCEEECCSSC-CCSC-HHHHTTTCSSCCEEECCSSCC
T ss_pred             CCcCCEEECcCCcCCCCC--cc-cccCCCCCEEECcCCc-CCCc-ccHHHhcCCCCCEEECCCCcc
Confidence            456777777665432210  01 2346777777777654 3321 233445666677766666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.69  E-value=1.3e-06  Score=83.22  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=17.1

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .+++|++|++++|.++...+...+.++++|++|+++++
T Consensus       126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            44555555555554432222222344455555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.68  E-value=2.2e-06  Score=73.25  Aligned_cols=134  Identities=18%  Similarity=0.096  Sum_probs=85.3

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      .++.|+++.+..-.-.  ......+++|+.|+|+++. ++.- -..++..+++|++|+++++.+..... .....+++|+
T Consensus        38 ~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCC
T ss_pred             CCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCC
Confidence            5677777654321100  0011357899999999764 3311 11234678999999999998643211 2224579999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      .|++++. +..... .....+++|++|+|++|.++.-. ...+..+++|++|+++++...+.
T Consensus       113 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          113 ELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEe
Confidence            9999865 221111 11247899999999999876422 12346789999999999865543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.68  E-value=1.9e-05  Score=72.87  Aligned_cols=117  Identities=13%  Similarity=-0.002  Sum_probs=62.2

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.++++.+..-.-.   . ...+++|+.|+|+++. ++.-  .  +..+++|++|++++|.++...    ...+++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~---~-l~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L  108 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT---G-IEKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNKLTNLD----VTPLTKL  108 (457)
T ss_dssp             TTCCEEECCSSCCCCCT---T-GGGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSCCSCCC----CTTCTTC
T ss_pred             CCCCEEEccCCCcccCh---h-hcccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCCCceee----cCCCCcC
Confidence            35666666654322211   1 2346777777777654 3321  1  456677777777776653321    2345677


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      +.|++++. +...   . ...+++|++|++++|.++.-.    +..+++|++|++++|.
T Consensus       109 ~~L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          109 TYLNCDTNKLTKL---D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CEEECCSSCCSCC---C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCS
T ss_pred             CEEECCCCcCCee---c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCC
Confidence            77777654 2111   1 235666667766666655421    3445566666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.66  E-value=1.1e-06  Score=86.25  Aligned_cols=38  Identities=13%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             HhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeec
Q 037159          146 IQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMF  184 (307)
Q Consensus       146 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~  184 (307)
                      +..+++|++|++++|.++......+ ..+++|+.|++++
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISS  256 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCS
T ss_pred             cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCC
Confidence            3455566666666655543333333 2345666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.66  E-value=2.1e-06  Score=76.30  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. +.-. ......+++|+.|+|+++. ++.. ....+..+++|++|++++|.++......+ ..+++|
T Consensus        52 ~~L~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNNRI-TYIS-NSDLQRCVNLQALVLTSNG-INTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KPLSSL  126 (353)
T ss_dssp             TTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHH-TTCTTC
T ss_pred             ccCcEEECCCCcC-cccC-HHHhccCCCCCEEECCCCc-cCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHh-CCCccC
Confidence            4788888876542 2110 0012458999999999764 4421 11235678999999999998743222223 457999


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|++++. +...........+++|++|++++|. ++... ...+.++++|++|++++|....
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCc
Confidence            99999765 2211110123478999999999984 54321 1234678999999999987544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.65  E-value=1.9e-06  Score=71.36  Aligned_cols=133  Identities=12%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.|++..+..-.-.  ......+++|+.|+|+++. ++.- ....+..+++|+.|+|+++.++.-. ..+...+++|+
T Consensus        33 ~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~  107 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQ-ISEL-APDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQ  107 (220)
T ss_dssp             TCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSC-CCEE-CTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCc-CCCc-CHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCC
Confidence            4666666554321100  0011347899999999764 4321 1233567899999999999864211 12224568999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|++++. +....... ...+++|++|+|++|.++.-.- ..+..+++|+.|++++....-
T Consensus       108 ~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          108 LLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCC
Confidence            9999765 22111112 2368999999999998664221 234568999999998876544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.65  E-value=1.2e-06  Score=80.24  Aligned_cols=132  Identities=17%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+|+.|+++.+..-.-  -......+++|+.|+|+++..++.-. ...+..+++|++|+|++|.++.-  .. ...+++|
T Consensus       136 ~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L  209 (440)
T 3zyj_A          136 SKLKELWLRNNPIESI--PSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKL  209 (440)
T ss_dssp             SSCCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSC
T ss_pred             ccCceeeCCCCccccc--CHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc--cc-cCCCccc
Confidence            5778888876532110  00112357888888888765443210 11345678888888888765311  11 2345777


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +.|+++++ +....... ...+++|++|+|++|.++.... ..+..+++|+.|+|+++...
T Consensus       210 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          210 DELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCC
T ss_pred             CEEECCCCccCccChhh-hccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCC
Confidence            88887654 22111111 2356777777777776553221 12345677777777766443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.64  E-value=1.4e-05  Score=76.81  Aligned_cols=112  Identities=10%  Similarity=0.100  Sum_probs=59.2

Q ss_pred             hCCCccEEecCCCCCCCHH----------------HHHHHHh--cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEee
Q 037159          122 RFPMVKHLALPPCNEITVD----------------GFRSAIQ--WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVM  183 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~  183 (307)
                      .+++|+.|+|+++. ++..                .+...+.  .+++|++|+|++|.+....-..+ ..+++|+.|+++
T Consensus       204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls  281 (636)
T 4eco_A          204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVA  281 (636)
T ss_dssp             GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECT
T ss_pred             cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECc
Confidence            35677777776554 4331                0222333  66677777777665432211222 234667777775


Q ss_pred             cc--CCH-HHHHHHH-----hcCCCCCEEEecCCCCCHHHHHH--HHHcCCCCcEEeccCCcCC
Q 037159          184 FS--FDL-DFAMSLF-----MSIPELKVLSLRSSIVDKNALNL--ILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       184 ~~--~~~-~~~~~l~-----~~~p~L~~L~L~~~~it~~~l~~--l~~~~~~L~~L~l~~C~~i  237 (307)
                      ++  +.. .....+.     ..+++|++|++++|.++  .+..  .+..+++|++|++++|...
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence            54  333 2222222     12367777777776665  3333  4556667777777666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.64  E-value=1.8e-06  Score=81.49  Aligned_cols=16  Identities=25%  Similarity=0.443  Sum_probs=8.5

Q ss_pred             cCCCCCEEEecCCCCC
Q 037159          197 SIPELKVLSLRSSIVD  212 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it  212 (307)
                      .+++|++|++++|.++
T Consensus       147 ~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          147 NLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             GCTTCCEEECTTSCCC
T ss_pred             ccCCCCEEeCcCCccc
Confidence            4555555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.63  E-value=5.5e-05  Score=64.40  Aligned_cols=83  Identities=14%  Similarity=0.052  Sum_probs=55.9

Q ss_pred             hcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-CCHH-HHHHHHhcCCCCCEEEecCCCCCH------HHHH
Q 037159          147 QWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-FDLD-FAMSLFMSIPELKVLSLRSSIVDK------NALN  217 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~~~~-~~~~l~~~~p~L~~L~L~~~~it~------~~l~  217 (307)
                      ..+|+|++|+|++|.++. ..+..+...+++|+.|+|++. +.+. .+..+ ..+ +|++|+|.+|.++.      .-..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHH
Confidence            568889999998887643 233344456788888888765 3221 22222 123 89999999998764      2344


Q ss_pred             HHHHcCCCCcEEec
Q 037159          218 LILTLMGSLEALNI  231 (307)
Q Consensus       218 ~l~~~~~~L~~L~l  231 (307)
                      .++..+|+|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            67788999998874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.62  E-value=3.9e-06  Score=69.93  Aligned_cols=110  Identities=14%  Similarity=0.043  Sum_probs=73.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+|+++. ++.. ....+..+++|++|+|+++.+..-.. .....+++|+.|++++. +... .......+++|
T Consensus        39 ~~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L  114 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKL-EPGVFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHL  114 (229)
T ss_dssp             CTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCCCEEEcCCCc-cCcc-CHHHhhCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCcc-ChhHhCcchhh
Confidence            3789999999765 4321 11235678999999999987632111 12245689999999766 2211 11122468999


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|+|++|.++  .+..-+..+++|++|+++++..-+
T Consensus       115 ~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A          115 KELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             CEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             CeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence            99999999877  233334778999999999885544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.61  E-value=5.8e-06  Score=72.60  Aligned_cols=128  Identities=17%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHH-HHHHHHhcCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASS-IIQVIGANCKN  176 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~c~~  176 (307)
                      .+++.|+++.+.. +.  +.  ....++|+.|+++++. ++.. ....+..+++|+.|+++++.+... ........+++
T Consensus       100 ~~L~~L~Ls~n~l-~~--l~--~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  172 (330)
T 1xku_A          100 VKLERLYLSKNQL-KE--LP--EKMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  172 (330)
T ss_dssp             TTCCEEECCSSCC-SB--CC--SSCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             CCCCEEECCCCcC-Cc--cC--hhhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence            4666776655432 10  00  0113577777777653 3321 122345677777777777765321 11112244677


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      |+.|++++. +..- .   ....++|++|++++|.++.... ..+..+++|++|+++++...
T Consensus       173 L~~L~l~~n~l~~l-~---~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          173 LSYIRIADTNITTI-P---QGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CCEEECCSSCCCSC-C---SSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCC
T ss_pred             cCEEECCCCccccC-C---ccccccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCc
Confidence            777777654 1110 0   0123677777777777654221 22345677777777777543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.61  E-value=5.5e-06  Score=74.50  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA  228 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~  228 (307)
                      ++|+.|+++++.+++.  . ....+++|+.|++++. +....... ...+++|++|+|++|.++.-  ......+|+|+.
T Consensus       226 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~  299 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVAL--NLYGQPIPTLKV  299 (390)
T ss_dssp             SSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCE
T ss_pred             ccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCCcCccc--CcccCCCCCCCE
Confidence            4555555555554321  1 1233455555555443 11110111 12455555555555554431  111133455555


Q ss_pred             EeccCCc
Q 037159          229 LNISHCL  235 (307)
Q Consensus       229 L~l~~C~  235 (307)
                      |++++|.
T Consensus       300 L~L~~n~  306 (390)
T 3o6n_A          300 LDLSHNH  306 (390)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            5555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.60  E-value=7.1e-07  Score=78.18  Aligned_cols=133  Identities=11%  Similarity=-0.028  Sum_probs=92.7

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. +......+...+++|+.|+|+++. ++..   .....+++|++|+|++|.++...- . ...+++|
T Consensus       144 ~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L  216 (317)
T 3o53_A          144 SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV  216 (317)
T ss_dssp             SSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred             CCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence            4677787776433 322223334457999999999875 4321   112248999999999998743211 1 3456999


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +.|++++. +..  +......+++|++|++++|.++...+...+..+++|+.|+++++..++.
T Consensus       217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            99999876 221  1111247899999999999999777888889999999999987776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.60  E-value=1.2e-06  Score=83.35  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=16.6

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|++|++++|.++... ...+..+++|++|++++|.
T Consensus       423 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCB
T ss_pred             CcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCC
Confidence            3445555555554433211 1122334555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.60  E-value=2.8e-06  Score=70.39  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP  199 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p  199 (307)
                      ..+++|+.|+|+++. ++.- ....+..+++|++|+|++|.++......+ ..+++|++|++++. +.......+ ..++
T Consensus        54 ~~l~~L~~L~L~~N~-i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~  129 (220)
T 2v70_A           54 KKLPQLRKINFSNNK-ITDI-EEGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGNDSF-IGLS  129 (220)
T ss_dssp             GGCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTTSS-TTCT
T ss_pred             ccCCCCCEEECCCCc-CCEE-CHHHhCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHhHc-CCCc
Confidence            457899999999764 4321 01235678999999999998643222222 45799999999765 221111122 3689


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      +|++|+|++|.++.-. ...+..+++|+.|+++++....
T Consensus       130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred             cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence            9999999999876421 1234568999999999886544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.59  E-value=1.3e-06  Score=70.81  Aligned_cols=110  Identities=13%  Similarity=0.042  Sum_probs=65.1

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+++++. ++...-...+..+++|++|+|+++.++...-..+ ...++|+.|++++. +....... ...+++|+
T Consensus        29 ~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNKM-FLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSSS-STTCTTCC
T ss_pred             CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHHH-hcCCCCCC
Confidence            367777777653 3321101124577788888888877643211222 34577888888655 22111111 23678999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +|+|++|.++... ...+..+++|++|++++....
T Consensus       106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence            9999999876421 123456789999999887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.56  E-value=1.9e-05  Score=78.34  Aligned_cols=110  Identities=12%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCH-HHHHHHH------hcCCCCceEEeecc-CCHHHHH
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NAS-SIIQVIG------ANCKNFSMLKVMFS-FDLDFAM  192 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-~~l~~i~------~~c~~L~~L~l~~~-~~~~~~~  192 (307)
                      .+++|+.|+|+++....  .+...+..+++|+.|+|++|. ++. .....++      ..+++|+.|+++++ +. ....
T Consensus       489 ~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             cCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            34555555555443111  011233455556666665554 443 2212221      12345666665544 22 1001


Q ss_pred             -HHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          193 -SLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       193 -~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                       .....+++|+.|+|++|.++  .+. .+..+++|+.|++++|...
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS
T ss_pred             hhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc
Confidence             01224556666666665554  222 2344556666666655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.56  E-value=2.9e-06  Score=81.61  Aligned_cols=85  Identities=12%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhc------CCCCCeEEecCCCCCHHHHHH-
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQW------WKGLESLTVPFISNASSIIQV-  169 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~------~~~L~~L~L~~~~~~~~~l~~-  169 (307)
                      ..+++.|.+..+.....  +......+++|+.|+|+++..++...+...+..      +++|++|++++|.++  .+.. 
T Consensus       248 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~  323 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE  323 (636)
T ss_dssp             CTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred             cCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence            34677777766543221  001112467777777776643554223333333      377777777777654  2221 


Q ss_pred             -HHhcCCCCceEEeecc
Q 037159          170 -IGANCKNFSMLKVMFS  185 (307)
Q Consensus       170 -i~~~c~~L~~L~l~~~  185 (307)
                       ....+++|+.|+++++
T Consensus       324 ~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             HHHTTCTTCCEEECCSC
T ss_pred             hhhccCCCCCEEeCcCC
Confidence             2234567777777543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.54  E-value=6.8e-06  Score=79.35  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=17.5

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      .+++|+.|+|++|.++.- ....+..+++|+.|+++++
T Consensus       558 ~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred             cccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCC
Confidence            455555555555554410 0112234555556665555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.53  E-value=2.5e-06  Score=70.63  Aligned_cols=113  Identities=13%  Similarity=0.072  Sum_probs=75.2

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .+.++.|+|+++. ++...-...+..+++|+.|+|+++.++...-..+ ..+++|+.|++++. +.... ......+++|
T Consensus        31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L  107 (220)
T 2v70_A           31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQ-HKMFKGLESL  107 (220)
T ss_dssp             CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCC-GGGGTTCSSC
T ss_pred             CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccC-HhHhcCCcCC
Confidence            3467899998764 4321111235689999999999998643221122 45689999999876 22111 1122478999


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      ++|+|++|.++... ...+..+++|+.|+++++...+.
T Consensus       108 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          108 KTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             CEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEE
Confidence            99999999976421 12245689999999999866553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.51  E-value=2.9e-05  Score=71.58  Aligned_cols=77  Identities=16%  Similarity=0.078  Sum_probs=42.7

Q ss_pred             cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCC
Q 037159          148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSL  226 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L  226 (307)
                      .+++|+.|+++++.++.-  .  ...+++|+.|+++++ +...   . ...+++|++|++++|.++.  +.  +..+++|
T Consensus       168 ~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L  235 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTE--ID--VTPLTQL  235 (457)
T ss_dssp             TCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC--CC--CTTCTTC
T ss_pred             cCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccc--cC--ccccCCC
Confidence            455566666665554321  1  234566666666544 1111   1 2356777777777777654  22  4556777


Q ss_pred             cEEeccCCcC
Q 037159          227 EALNISHCLL  236 (307)
Q Consensus       227 ~~L~l~~C~~  236 (307)
                      ++|+++++..
T Consensus       236 ~~L~l~~N~l  245 (457)
T 3bz5_A          236 TYFDCSVNPL  245 (457)
T ss_dssp             SEEECCSSCC
T ss_pred             CEEEeeCCcC
Confidence            7777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.51  E-value=4e-06  Score=72.54  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      .++.|+++.+.. +.-. ......+++|+.|+|+++. ++.-  .. ...+++|+.|+++++.+..  +......+++|+
T Consensus        32 ~l~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~  103 (290)
T 1p9a_G           32 DTTILHLSENLL-YTFS-LATLMPYTRLTQLNLDRAE-LTKL--QV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALT  103 (290)
T ss_dssp             TCCEEECTTSCC-SEEE-GGGGTTCTTCCEEECTTSC-CCEE--EC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCC
T ss_pred             CCCEEEcCCCcC-CccC-HHHhhcCCCCCEEECCCCc-cCcc--cC-CCCCCcCCEEECCCCcCCc--CchhhccCCCCC
Confidence            566777765443 1100 0112357899999999765 4421  11 2578999999999998641  122235678999


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      .|++++. +..... .....+++|++|+|++|.++.- ....+..+++|+.|+++++.....
T Consensus       104 ~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          104 VLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             EEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             EEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCcc
Confidence            9999876 221111 1124789999999999987632 112346789999999999875543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.49  E-value=6.2e-06  Score=76.72  Aligned_cols=130  Identities=14%  Similarity=0.063  Sum_probs=80.3

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+..-...  ......+++|+.|+|+++. ++......+...+++|+.|+|++|.++..  ... ..+++|
T Consensus       120 ~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~-~~l~~L  193 (487)
T 3oja_A          120 QGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKL  193 (487)
T ss_dssp             SSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTC
T ss_pred             CCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc--ccc-ccCCCC
Confidence            34566666554322110  0011246788888888664 54332333444788999999999886432  111 146889


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +.|+++++ +... ... ...+++|+.|+|++|.++.  +...+..+++|+.|+++++...
T Consensus       194 ~~L~Ls~N~l~~~-~~~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          194 KTLDLSSNKLAFM-GPE-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEEECCSSCCCEE-CGG-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CEEECCCCCCCCC-CHh-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence            99999766 2211 111 2367899999999998773  3333556789999999888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.49  E-value=4.6e-06  Score=81.40  Aligned_cols=106  Identities=18%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+|+++. +.  .+..-+..+++|++|+|++|.++  .+..-...+++|+.|+|+++ +. .....+ ..+++
T Consensus       222 ~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~  294 (727)
T 4b8c_D          222 DDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-GSCFQ  294 (727)
T ss_dssp             CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-GGGTT
T ss_pred             cCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhh-cCCCC
Confidence            34556666665543 22  11111225566666666665543  11111133456666666544 11 101111 24556


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |++|+|++|.++  .+..-+..+++|+.|+|+++..
T Consensus       295 L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          295 LKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence            666666666544  1221234456666666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.49  E-value=3.4e-06  Score=83.73  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             CCCccEEEeccCCCCC---HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHH-HHh
Q 037159           97 CKTVKRLIFNYSIYLK---DEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQV-IGA  172 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~---d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~-i~~  172 (307)
                      ..+|+.|+++.+....   ...+    ..+++|+.|+|+++. ++.. ....+..+++|++|+|++|.+++..... ...
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             cccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            3567777776653321   1111    346778888887654 3321 1223456778888888877664322221 123


Q ss_pred             cCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH---HHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          173 NCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK---NALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       173 ~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~---~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .+++|++|+++++ +...........+++|++|+|++|.++.   ..+..+..  ++|+.|+++++....
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYS  188 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccc
Confidence            4678888888765 2211111122467888888888877543   23333221  678888887775443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.46  E-value=3.6e-06  Score=77.83  Aligned_cols=135  Identities=13%  Similarity=0.053  Sum_probs=80.8

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+|+.|+++.+.. +.-. ......+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.+....-.. ...+++
T Consensus        55 l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~  129 (477)
T 2id5_A           55 FPHLEELELNENIV-SAVE-PGAFNNLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENKIVILLDYM-FQDLYN  129 (477)
T ss_dssp             CTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTT
T ss_pred             CCCCCEEECCCCcc-CEeC-hhhhhCCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCccccCChhH-cccccc
Confidence            45777887766432 2100 0111347888888888654 33210 113456788888888888753221111 245688


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|++++. +.......+ ..+++|++|+|++|.++.-. ...+..+++|+.|+++++....
T Consensus       130 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcE
Confidence            888888764 221111112 36789999999998866422 2345678999999998886544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.46  E-value=4.5e-06  Score=69.11  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=75.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+|+++. ++.- ....+..+++|+.|+|+++.+.......+ ..+++|+.|++++. +.. ........+++|+
T Consensus        32 ~~l~~L~l~~n~-i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~  107 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQ  107 (220)
T ss_dssp             TTCCEEECCSSC-CCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCEEECCCCc-CCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCc-cCHhHccCCCCCC
Confidence            689999999764 4321 01235678999999999998743222222 45689999999876 221 1112234789999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +|+|++|.++.... ..+..+++|++|+++++...+.
T Consensus       108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B          108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence            99999999764221 2345789999999999876553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.46  E-value=4.2e-06  Score=76.93  Aligned_cols=135  Identities=13%  Similarity=-0.021  Sum_probs=82.6

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. +.-. ......+++|+.|+|+++. ++.. ....+..+++|++|+|++|.++...- .....+++|
T Consensus        75 ~~l~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENNI-QMIQ-ADTFRHLHHLEVLQLGRNS-IRQI-EVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTC
T ss_pred             CCccEEECcCCcC-ceEC-HHHcCCCCCCCEEECCCCc-cCCc-ChhhccCcccCCEEECCCCcCCccCh-hhhcccCCC
Confidence            4677888876432 1100 0111357899999998764 4321 11235678999999999987642111 112457899


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      ++|++++. +.... ......+++|++|+++++. ++.-. ...+.++++|++|++++|.....
T Consensus       150 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          150 RELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             CEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc
Confidence            99999765 22111 1122478999999999855 43211 12345789999999999876553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.46  E-value=1.1e-05  Score=76.94  Aligned_cols=106  Identities=14%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP  199 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p  199 (307)
                      ..+++|+.|+|+++. ++.. ....+..+++|+.|+|++|.++.  +......+++|+.|+++++ +. .....+ ..++
T Consensus       251 ~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~  324 (597)
T 3oja_B          251 LNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFD  324 (597)
T ss_dssp             GGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHT
T ss_pred             ccCCCCCEEECCCCc-cCCC-CHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCccc-ccCC
Confidence            457888888888764 4321 12235578888888888887643  1122234688888888765 22 111112 3578


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +|+.|+|++|.++...    +..+++|+.|+|+++..
T Consensus       325 ~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          325 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             TCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCE
T ss_pred             CCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCC
Confidence            8888888888866432    45678888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.45  E-value=2.2e-06  Score=78.56  Aligned_cols=135  Identities=15%  Similarity=0.062  Sum_probs=84.0

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. ..-... ....+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.++...-. ....+++|
T Consensus        64 ~~l~~L~L~~n~i-~~~~~~-~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQI-QIIKVN-SFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCCC-CEECTT-TTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSC
T ss_pred             CCCcEEEccCCcC-CeeCHH-HhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCcCCeeCHh-HhhccccC
Confidence            4677788776432 110001 12457899999999764 43211 12456789999999999876422111 12456899


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      +.|++++. +..... .....+++|++|+|+++. ++.-. ...+.++++|++|++++|...+.
T Consensus       139 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          139 KELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             CEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSC
T ss_pred             ceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCccc
Confidence            99999765 221111 112478999999999865 44211 12346789999999999966543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.41  E-value=2e-05  Score=67.23  Aligned_cols=62  Identities=18%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS  185 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~  185 (307)
                      .+++|+.|+++++. ++... ...+..+++|++|+++++.+....+......+++|+.|+++++
T Consensus        98 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           98 GLSSLQKLVAVETN-LASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             TCTTCCEEECTTSC-CCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCccccEEECCCCC-ccccC-chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            35677777776553 22100 0014466777777777776533222222334577777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.40  E-value=8.1e-06  Score=72.81  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=52.1

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+|+++. ++.-. ...+..+++|++|+|++|.+....-. ....+++|+.|++++. +....... ...+++
T Consensus        62 ~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~  137 (361)
T 2xot_A           62 RLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQ  137 (361)
T ss_dssp             CCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTT-TTTCTT
T ss_pred             cccccCEEECCCCc-CCccC-hhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHH-hCCccc
Confidence            45667777776543 32110 01234566677777766654321111 1134466666766554 11110111 125666


Q ss_pred             CCEEEecCCCCCHHHHHH--HHHcCCCCcEEeccCCcC
Q 037159          201 LKVLSLRSSIVDKNALNL--ILTLMGSLEALNISHCLL  236 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~--l~~~~~~L~~L~l~~C~~  236 (307)
                      |++|+|++|.++.-....  -...+++|+.|+|+++..
T Consensus       138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            677777666654311100  013466666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.35  E-value=2.1e-05  Score=75.84  Aligned_cols=114  Identities=11%  Similarity=0.073  Sum_probs=68.0

Q ss_pred             hCCCccEEecCCCCCCCHHH-------HHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHH
Q 037159          122 RFPMVKHLALPPCNEITVDG-------FRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMS  193 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~-------l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~  193 (307)
                      .+++|+.|+|+++. ++.-.       ....+..+++|+.|+|++|.++.-. ......+++|+.|++++. +.. ....
T Consensus       502 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~-l~~~  578 (680)
T 1ziw_A          502 GLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNT-LPAS  578 (680)
T ss_dssp             TCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             cccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HHHcccccCcceeECCCCCCCc-CCHh
Confidence            45667777776543 22110       0011456777888888777654111 112245688888888765 221 1111


Q ss_pred             HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          194 LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       194 l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ....+++|+.|+|++|.++.-.-..+...+++|+.|+++++.-.-
T Consensus       579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence            224789999999999987643322232367899999999876554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.33  E-value=1.7e-06  Score=85.98  Aligned_cols=137  Identities=13%  Similarity=0.088  Sum_probs=90.7

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. +.-.- .....+++|+.|+|+++.....- -...+..+++|+.|+|++|.+.......+ ..+++|
T Consensus        24 ~~l~~LdLs~N~i-~~i~~-~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFNYI-RTVTA-SSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHL   99 (844)
T ss_dssp             TTCCEEEEESCCC-CEECS-SSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSC
T ss_pred             CCcCEEECCCCcC-CccCh-hHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCccc
Confidence            5788888887542 21100 01145799999999987433210 02335789999999999998643322223 457999


Q ss_pred             ceEEeecc-CCHHHHHH-HHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          178 SMLKVMFS-FDLDFAMS-LFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~-l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++|+++++ ..+..... ....+++|++|+|++|.++.......+.++++|++|+++++....
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            99999876 22111111 124789999999999997754433456789999999999986543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.33  E-value=1.9e-05  Score=72.87  Aligned_cols=133  Identities=16%  Similarity=0.038  Sum_probs=73.1

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+|+.|+++.+.. +.- -......+++|+.|+|+++. ++.. ....+..+++|++|+++++.+.......+ ..+++|
T Consensus        80 ~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L  154 (477)
T 2id5_A           80 FNLRTLGLRSNRL-KLI-PLGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSL  154 (477)
T ss_dssp             TTCCEEECCSSCC-CSC-CTTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTC
T ss_pred             ccCCEEECCCCcC-Ccc-CcccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCCCccceeChhhc-cCCCCC
Confidence            4677787765432 110 00111346888888888664 3211 11234577888888888776532221122 346788


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      ++|+++++ +....... ...+++|+.|+|.++.++...- ..+..+++|++|++++|..+
T Consensus       155 ~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             CEEEEESCCCSSCCHHH-HTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTC
T ss_pred             CEEECCCCcCcccChhH-hcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccc
Confidence            88888765 22111122 2367788888888777553211 12345667777777766544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.32  E-value=0.00019  Score=68.71  Aligned_cols=76  Identities=24%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159          149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE  227 (307)
Q Consensus       149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~  227 (307)
                      +++|+.|++++|.++.     +...+++|+.|+++++ +.     .+...+++|+.|+|++|.++  .+...+.++++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~-----~lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCS-----CCCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCC-----cCCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence            3566666766665532     1134567777777654 21     11114667777777777766  2333356677788


Q ss_pred             EEeccCCcC
Q 037159          228 ALNISHCLL  236 (307)
Q Consensus       228 ~L~l~~C~~  236 (307)
                      .|+|+++..
T Consensus       288 ~L~L~~N~l  296 (622)
T 3g06_A          288 TVNLEGNPL  296 (622)
T ss_dssp             EEECCSCCC
T ss_pred             EEEecCCCC
Confidence            888777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.29  E-value=3.8e-06  Score=73.40  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      ++++.++++.+..-....+......+++|+.|+|+++..++.. +...+..+++|++|+++++.++......+ ..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCC
Confidence            6899999887544220001112245899999999853333321 22335689999999999988643222223 456999


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC-CCcEEeccCCcCC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG-SLEALNISHCLLG  237 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~-~L~~L~l~~C~~i  237 (307)
                      ++|++++. +.......+ ..+++|++|++++|.++...- .-+..++ +|++|+++++...
T Consensus       128 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEE
T ss_pred             CEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeee
Confidence            99999865 221111122 478999999999998763221 2234565 9999999998654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.21  E-value=0.00033  Score=59.59  Aligned_cols=87  Identities=17%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             HHHHHhhCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEecCCCCCHH-HHHHHHhcCCCCceEEeecc-CC-----
Q 037159          116 LVYAATRFPMVKHLALPPCNEITV-DGFRSAIQWWKGLESLTVPFISNASS-IIQVIGANCKNFSMLKVMFS-FD-----  187 (307)
Q Consensus       116 l~~i~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~c~~L~~L~l~~~-~~-----  187 (307)
                      +..+...+|+|++|+|++.. ++. .++...+..+++|+.|+|++|.+.+. .+..+. .. +|++|.+.+. +.     
T Consensus       162 l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          162 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSS
T ss_pred             HHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCc
Confidence            34455679999999999765 433 34556677899999999999987543 333332 22 8999999765 22     


Q ss_pred             H-HHHHHHHhcCCCCCEEE
Q 037159          188 L-DFAMSLFMSIPELKVLS  205 (307)
Q Consensus       188 ~-~~~~~l~~~~p~L~~L~  205 (307)
                      . .....+...+|+|+.|+
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence            1 22334556899999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.17  E-value=1.4e-05  Score=71.33  Aligned_cols=111  Identities=16%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHh-cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQ-WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .++++.|+|+++. ++.-. ...+. .+++|+.|+|++|.++...-..+ ..+++|+.|++++. +... .......+++
T Consensus        38 ~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  113 (361)
T 2xot_A           38 PSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTL-DEFLFSDLQA  113 (361)
T ss_dssp             CTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             CCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence            3568999999764 44311 11233 78999999999998643221222 35699999999876 2211 1112247899


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |++|+|++|.++.-. ...+..+++|+.|+|+++....
T Consensus       114 L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          114 LEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             CCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCe
Confidence            999999999977421 1234678999999999986554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.05  E-value=0.00018  Score=67.99  Aligned_cols=79  Identities=10%  Similarity=0.006  Sum_probs=35.9

Q ss_pred             cCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH----HHHc
Q 037159          148 WWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNL----ILTL  222 (307)
Q Consensus       148 ~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~----l~~~  222 (307)
                      .+++|+.|+|++|.++.     +...+++|+.|+++++ +..  +..+   .++|++|+|++|.++.  +..    +...
T Consensus       138 ~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~~--lp~~~~~L~~~  205 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLES--LPAVPVRNHHS  205 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS--CCCCC------
T ss_pred             cCccccEEeCCCCccCc-----CCCcCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCCc--hhhHHHhhhcc
Confidence            45566666666655422     1113456666666544 111  0001   1566777777666541  111    1111


Q ss_pred             CCCCcEEeccCCcCCC
Q 037159          223 MGSLEALNISHCLLGQ  238 (307)
Q Consensus       223 ~~~L~~L~l~~C~~i~  238 (307)
                      .+.|+.|+++++..-+
T Consensus       206 ~~~L~~L~Ls~N~l~~  221 (571)
T 3cvr_A          206 EETEIFFRCRENRITH  221 (571)
T ss_dssp             --CCEEEECCSSCCCC
T ss_pred             cccceEEecCCCccee
Confidence            2233777777665443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.04  E-value=1.7e-05  Score=69.68  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=16.9

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|++|+|++|.++.... ..+..+++|++|++++|.
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc
Confidence            34555555555554432111 112344555555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.04  E-value=1.2e-05  Score=76.54  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=15.7

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|++|+|++|.++.-.- ..+.++++|++|+++++.
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCc
Confidence            34455555555544332100 112334455555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.01  E-value=9.4e-06  Score=67.84  Aligned_cols=132  Identities=11%  Similarity=0.032  Sum_probs=61.2

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+..++.-. ......+++|+.|++++|..++.-. ...+..+++|++|++++|.++.  +.. ...+++|
T Consensus        55 ~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST  129 (239)
T ss_dssp             TTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred             CCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence            456666665543221100 0001345677777776533333110 1123456677777777665422  111 2344556


Q ss_pred             c---eEEeecc--CCHHHHHHHHhcCCCCC-EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          178 S---MLKVMFS--FDLDFAMSLFMSIPELK-VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       178 ~---~L~l~~~--~~~~~~~~l~~~~p~L~-~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +   .|++++.  +..... .....+++|+ +|++++|.++.-.- ..... ++|+.|+++++..+
T Consensus       130 ~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             CSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTC
T ss_pred             ccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCc
Confidence            5   6666543  111000 1112566777 77777766542111 11222 56777777776533

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.95  E-value=0.00014  Score=68.78  Aligned_cols=121  Identities=11%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.|+++.+..-.   +.   ..+++|+.|+|+++. ++.  +.   ..+++|+.|+|++|.++.  +..+.   ++|+
T Consensus       121 ~L~~L~Ls~N~l~~---lp---~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~L~~--lp~l~---~~L~  183 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM---LP---ELPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQLTF--LPELP---ESLE  183 (571)
T ss_dssp             TCCEEECCSSCCSC---CC---CCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSC--CCCCC---TTCC
T ss_pred             CCCEEECCCCcCCC---CC---CcCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCCCCC--cchhh---CCCC
Confidence            56666666543221   11   146789999998764 432  22   157899999999998643  21222   8999


Q ss_pred             eEEeecc-CCH--HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDL--DFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~--~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+++++ +..  .....+....+.|+.|+|++|.++.  +..-+..+++|+.|+|+++....
T Consensus       184 ~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             EEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence            9999876 220  0000122223445999999999773  33333458999999999987543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.92  E-value=1.9e-05  Score=65.96  Aligned_cols=133  Identities=5%  Similarity=-0.037  Sum_probs=81.7

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecC-CCCCHHHHHHHHhcCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPF-ISNASSIIQVIGANCKN  176 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~c~~  176 (307)
                      ..++.+++..+..-.-.  ......+++|+.|+++++..++.-. ...+..+++|++|++++ +.++.-.. .....+++
T Consensus        31 ~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred             CcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence            46888888764421100  0012357899999999774233210 11346789999999998 66532111 12245789


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCC---EEEecCC-CCCHHHHHHHHHcCCCCc-EEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELK---VLSLRSS-IVDKNALNLILTLMGSLE-ALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~---~L~L~~~-~it~~~l~~l~~~~~~L~-~L~l~~C~~i~  238 (307)
                      |+.|++++. +..  +.. ...+++|+   +|++++| .++.-.- ..+.++++|+ .|+++++...+
T Consensus       107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCE
T ss_pred             CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcc
Confidence            999999765 221  111 23677777   9999999 6653211 1245689999 99999886544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.83  E-value=7.5e-05  Score=59.32  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=27.0

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          196 MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       196 ~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ..+++|++|+|++|.++.- ....+..+++|++|+++++....
T Consensus        78 ~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCCccc
Confidence            3577888888888776521 11234567888888887776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.78  E-value=6.1e-05  Score=66.09  Aligned_cols=109  Identities=10%  Similarity=0.038  Sum_probs=72.1

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+++++. ++... ...+..+++|+.|++++|.+.......+ ..+++|+.|+++++ +. ..... ...+++|+
T Consensus       193 ~~L~~L~l~~n~-i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHLDHNK-IQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQ  267 (332)
T ss_dssp             SSCSCCBCCSSC-CCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTT-GGGCTTCC
T ss_pred             CCCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChh-hhcCccCC
Confidence            689999998764 33211 1234578999999999987643222222 45789999999866 22 11111 24789999


Q ss_pred             EEEecCCCCCHHHHHHHHH-----cCCCCcEEeccCCcCC
Q 037159          203 VLSLRSSIVDKNALNLILT-----LMGSLEALNISHCLLG  237 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~-----~~~~L~~L~l~~C~~i  237 (307)
                      +|++++|.++..+...+..     ..+.|+.|+++++...
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            9999999877543332222     1477999999988754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.78  E-value=9.3e-05  Score=58.64  Aligned_cols=87  Identities=13%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159          149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE  227 (307)
Q Consensus       149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~  227 (307)
                      .++|++|+++++.+.... ......+++|++|++++. +... .......+++|++|++++|.++.-. ...+..+++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence            479999999998864211 112245689999999866 2211 1112247899999999999977321 12346789999


Q ss_pred             EEeccCCcCCC
Q 037159          228 ALNISHCLLGQ  238 (307)
Q Consensus       228 ~L~l~~C~~i~  238 (307)
                      +|+++++....
T Consensus       104 ~L~l~~N~l~~  114 (177)
T 2o6r_A          104 ELALDTNQLKS  114 (177)
T ss_dssp             EEECCSSCCSC
T ss_pred             EEECcCCcceE
Confidence            99999986543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.72  E-value=0.00016  Score=70.61  Aligned_cols=105  Identities=11%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             CCCccEEEeccCCCC--CHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcC
Q 037159           97 CKTVKRLIFNYSIYL--KDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANC  174 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~--~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c  174 (307)
                      ...++.|+++.+...  ....     -.+++|+.|+|+++. ++  .+...+..+++|+.|+|++|.++  .+..-...+
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~-----~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l  292 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANI-----FKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSC  292 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGG-----GGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGG
T ss_pred             CCCCcEEECCCCCCCCCChhh-----cCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCC
Confidence            457888888775532  2221     258999999999775 54  34444678999999999999875  222222457


Q ss_pred             CCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCH
Q 037159          175 KNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDK  213 (307)
Q Consensus       175 ~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~  213 (307)
                      ++|+.|+|+++ +. ..... ...+++|++|+|++|.++.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             CCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCC
Confidence            99999999876 22 11112 2478999999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.70  E-value=0.00092  Score=63.90  Aligned_cols=15  Identities=20%  Similarity=0.211  Sum_probs=8.6

Q ss_pred             CCCCCEEEecCCCCC
Q 037159          198 IPELKVLSLRSSIVD  212 (307)
Q Consensus       198 ~p~L~~L~L~~~~it  212 (307)
                      +++|+.|++++|.++
T Consensus       180 ~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          180 PSGLQELSVSDNQLA  194 (622)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CCCCcEEECCCCCCC
Confidence            356666666666544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.65  E-value=0.00012  Score=57.75  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=25.2

Q ss_pred             hcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          196 MSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       196 ~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      ..+++|++|+|++|.++.-. ...+..+++|++|+|++....
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence            35677777777777755211 123455777778877776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.62  E-value=0.00027  Score=56.98  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=60.5

Q ss_pred             CCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCc
Q 037159          149 WKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLE  227 (307)
Q Consensus       149 ~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~  227 (307)
                      .++|++|+++++.++.  +......+++|+.|++++. +....... ...+++|++|+|++|.++.-.- ..+.++++|+
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCCccCEeCH-HHhCCCCCCC
Confidence            3689999999998742  1122356799999999876 22111112 2378999999999998764221 2346789999


Q ss_pred             EEeccCCcCCCc
Q 037159          228 ALNISHCLLGQI  239 (307)
Q Consensus       228 ~L~l~~C~~i~~  239 (307)
                      +|+++++...+.
T Consensus       106 ~L~L~~N~l~~~  117 (193)
T 2wfh_A          106 LLSLHGNDISVV  117 (193)
T ss_dssp             EEECCSSCCCBC
T ss_pred             EEECCCCCCCee
Confidence            999999876553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.52  E-value=0.00012  Score=58.95  Aligned_cols=87  Identities=8%  Similarity=-0.034  Sum_probs=59.7

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA  228 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~  228 (307)
                      ++|++|+++++.++...........++|+.|++++. +.......+ ..+++|++|+|++|.++...- ..+.++++|++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISN-KMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence            489999999998643221112345799999999876 221111222 378999999999999774221 22456899999


Q ss_pred             EeccCCcCCC
Q 037159          229 LNISHCLLGQ  238 (307)
Q Consensus       229 L~l~~C~~i~  238 (307)
                      |+++++...+
T Consensus       107 L~L~~N~l~~  116 (192)
T 1w8a_A          107 LNLYDNQISC  116 (192)
T ss_dssp             EECCSSCCCE
T ss_pred             EECCCCcCCe
Confidence            9999987554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.43  E-value=0.00039  Score=55.09  Aligned_cols=85  Identities=13%  Similarity=-0.012  Sum_probs=55.8

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+|+++. ++.- ....+..+++|+.|+|++|.++.-. ..+...+++|+.|++++. +... .......+++|+
T Consensus        33 ~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred             CCCcEEEeCCCC-cccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence            689999998764 3321 1223567899999999998864311 112245689999999765 2211 111224689999


Q ss_pred             EEEecCCCCC
Q 037159          203 VLSLRSSIVD  212 (307)
Q Consensus       203 ~L~L~~~~it  212 (307)
                      +|+|++|.++
T Consensus       109 ~L~L~~N~~~  118 (174)
T 2r9u_A          109 HIYLYNNPWD  118 (174)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEeCCCCcc
Confidence            9999999865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.42  E-value=0.00033  Score=55.20  Aligned_cols=85  Identities=13%  Similarity=-0.024  Sum_probs=54.9

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      ++|+.|+|+++. ++.- ....+..+++|+.|+|++|.+..-. .......++|+.|++++. +... .......+++|+
T Consensus        30 ~~l~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYDNQ-ITKL-EPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCcEEEcCCCc-CCcc-ChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCC
Confidence            678899998664 3321 0123557889999999998764211 112245689999999765 2211 111224789999


Q ss_pred             EEEecCCCCC
Q 037159          203 VLSLRSSIVD  212 (307)
Q Consensus       203 ~L~L~~~~it  212 (307)
                      +|+|++|.++
T Consensus       106 ~L~L~~N~~~  115 (170)
T 3g39_A          106 HIWLLNNPWD  115 (170)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEeCCCCCC
Confidence            9999999865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.40  E-value=0.00076  Score=61.97  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=17.1

Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +|++|++++|.++  .+.. +..+++|++|+++++..
T Consensus       216 ~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          216 SLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcC
Confidence            4555555555443  1211 33456666666666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.30  E-value=0.0012  Score=60.64  Aligned_cols=77  Identities=19%  Similarity=0.122  Sum_probs=38.0

Q ss_pred             hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159          147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS  225 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~  225 (307)
                      ..+++|++|++++|.+..     +....++|+.|+++++ +.  .+..+ ..+++|++|++++|.++.  +.   ...++
T Consensus       192 ~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~--~lp~~-~~l~~L~~L~l~~N~l~~--l~---~~~~~  258 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILE--ELPEL-QNLPFLTTIYADNNLLKT--LP---DLPPS  258 (454)
T ss_dssp             TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCS--SCCCC-TTCTTCCEEECCSSCCSS--CC---SCCTT
T ss_pred             cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCC--ccccc-CCCCCCCEEECCCCcCCc--cc---ccccc
Confidence            445555666655554421     1112245666666544 11  11112 356777777777776553  11   12356


Q ss_pred             CcEEeccCCcC
Q 037159          226 LEALNISHCLL  236 (307)
Q Consensus       226 L~~L~l~~C~~  236 (307)
                      |+.|++++|..
T Consensus       259 L~~L~l~~N~l  269 (454)
T 1jl5_A          259 LEALNVRDNYL  269 (454)
T ss_dssp             CCEEECCSSCC
T ss_pred             cCEEECCCCcc
Confidence            66666665543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.07  E-value=0.00039  Score=60.86  Aligned_cols=20  Identities=10%  Similarity=0.180  Sum_probs=8.9

Q ss_pred             HHHHHHHhhCCCccEEecCC
Q 037159          114 EHLVYAATRFPMVKHLALPP  133 (307)
Q Consensus       114 ~~l~~i~~~~~~L~~L~L~~  133 (307)
                      ..+..+...|++|+.|+|++
T Consensus       216 ~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          216 ADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             HHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHhcCCCeEEECCC
Confidence            33333434445555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.51  E-value=0.0051  Score=53.64  Aligned_cols=12  Identities=8%  Similarity=-0.061  Sum_probs=6.8

Q ss_pred             hCCCccEEecCC
Q 037159          122 RFPMVKHLALPP  133 (307)
Q Consensus       122 ~~~~L~~L~L~~  133 (307)
                      .|++|+.|+++.
T Consensus       122 ~~~~L~~l~l~~  133 (329)
T 3sb4_A          122 GCDNLKICQIRK  133 (329)
T ss_dssp             TCTTCCEEEBCC
T ss_pred             cCcccceEEcCC
Confidence            356666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.93  E-value=0.0014  Score=57.53  Aligned_cols=87  Identities=11%  Similarity=0.029  Sum_probs=47.7

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      ..++|+.|+|++...++.- ....+..+++|+.|+|++|.+....-. ....+++|+.|+|++. +.. ....+...++ 
T Consensus        29 ~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-  104 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALES-LSWKTVQGLS-  104 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-
T ss_pred             CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccce-eCHHHcccCC-
Confidence            3567888888753334321 012345778888888888875332111 1234677888888654 110 0011111233 


Q ss_pred             CCEEEecCCCCC
Q 037159          201 LKVLSLRSSIVD  212 (307)
Q Consensus       201 L~~L~L~~~~it  212 (307)
                      |+.|+|.+|.++
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            788888877754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.58  E-value=0.003  Score=55.41  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=8.6

Q ss_pred             cCCCCCEEEecCCCCC
Q 037159          197 SIPELKVLSLRSSIVD  212 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it  212 (307)
                      .+++|++|+|++|.++
T Consensus        78 ~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALE   93 (347)
T ss_dssp             SCSCCCEEECCSSCCS
T ss_pred             CCcCCCEEeCCCCccc
Confidence            4555555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=92.48  E-value=0.0014  Score=57.88  Aligned_cols=14  Identities=7%  Similarity=-0.223  Sum_probs=8.3

Q ss_pred             CCCcEEeccCCcCC
Q 037159          224 GSLEALNISHCLLG  237 (307)
Q Consensus       224 ~~L~~L~l~~C~~i  237 (307)
                      ..|+.|+++++..-
T Consensus       154 ~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          154 FESVILWLNKNGIQ  167 (350)
T ss_dssp             SSCEEEECCSSCCC
T ss_pred             hhhhhhcccccccc
Confidence            35666777665443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=85.31  E-value=0.12  Score=46.14  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             hCCCccEEecCCCCC-CCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhcC
Q 037159          122 RFPMVKHLALPPCNE-ITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMSI  198 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~~  198 (307)
                      .|.+|+.+.++.... +..    ..+..|+.|+.+.+...-  +.+.    ....|.+|+++.|...+..-+-.++ ..|
T Consensus       263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF-~~C  333 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDAF-AGC  333 (394)
T ss_dssp             TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTT-TTC
T ss_pred             ecccccEEecccccceecC----cccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhHh-hCC
Confidence            466777777754321 111    123467777777775421  1221    1245777777777544221111111 367


Q ss_pred             CCCCEEEecCCC--CCHHHHHHHHHcCCCCcEEeccC
Q 037159          199 PELKVLSLRSSI--VDKNALNLILTLMGSLEALNISH  233 (307)
Q Consensus       199 p~L~~L~L~~~~--it~~~l~~l~~~~~~L~~L~l~~  233 (307)
                      .+|+.+.|..+-  |.+.+    ..+|++|+.+++.+
T Consensus       334 ~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          334 EQLERIAIPSSVTKIPESA----FSNCTALNNIEYSG  366 (394)
T ss_dssp             TTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESS
T ss_pred             CCCCEEEECcccCEEhHhH----hhCCCCCCEEEECC
Confidence            778877775432  43332    35677777777754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=85.23  E-value=0.067  Score=48.06  Aligned_cols=14  Identities=29%  Similarity=0.290  Sum_probs=7.9

Q ss_pred             cCCCCCEEEecCCC
Q 037159          197 SIPELKVLSLRSSI  210 (307)
Q Consensus       197 ~~p~L~~L~L~~~~  210 (307)
                      .|++|+.+.+.++.
T Consensus       269 ~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          269 YCPELAEVTTYGST  282 (401)
T ss_dssp             TCTTCCEEEEESSC
T ss_pred             CCCCCCEEEeCCcc
Confidence            45566666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=80.85  E-value=0.23  Score=44.20  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             hhCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCeEEecCCC--CCHHHHHHHHhcCCCCceEEeeccCCHHHHHHHHhc
Q 037159          121 TRFPMVKHLALPPCN-EITVDGFRSAIQWWKGLESLTVPFIS--NASSIIQVIGANCKNFSMLKVMFSFDLDFAMSLFMS  197 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~c~~L~~L~l~~~~~~~~~~~l~~~  197 (307)
                      ..|++|+.+.++..- .+.+    ..+..|.+|++++|...-  +.+.    ....|.+|+++.|...+..-+-.++ ..
T Consensus       285 ~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF-~~  355 (394)
T 4gt6_A          285 MNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAF-SN  355 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGG-TT
T ss_pred             ccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHh-hC
Confidence            358999999997432 1222    235689999999997541  2222    1257899999999765332112222 48


Q ss_pred             CCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEecc
Q 037159          198 IPELKVLSLRSSIVDKNALNLILTLMGSLEALNIS  232 (307)
Q Consensus       198 ~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~  232 (307)
                      |++|+.+.+.++...   +. -...|.+|+.+.+.
T Consensus       356 C~~L~~i~~~~~~~~---~~-~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQ---WN-AISTDSGLQNLPVA  386 (394)
T ss_dssp             CTTCCEEEESSCHHH---HH-TCBCCCCC------
T ss_pred             CCCCCEEEECCceee---hh-hhhccCCCCEEEeC
Confidence            999999999886421   21 23457788877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	7e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLW 52
          W ++  ++L+ IF  L + +L+  VS VC  W   + D  LW
Sbjct: 1  WDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLW 41

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 17 DILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLNVLLCNAFDILPSNSNGLS 76
           I   I   L    L  A   VC  W   + D +LW+ L   ++  ++     +   G  
Sbjct: 21 HIAENILSYLDAKSLC-AAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWG 79

Query: 77 DGHSSWLNAMHILNNAS 93
                          S
Sbjct: 80 QYLFKNKPPDGNAPPNS 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.71
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.06
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.02
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.14
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.95
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.46
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.37
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.41
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.26
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.15
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	92.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	88.39

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=148.88  Aligned_cols=142  Identities=15%  Similarity=0.205  Sum_probs=98.0

Q ss_pred             hcCCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCC-CCHHHHH-HHHh
Q 037159           95 LSCKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFIS-NASSIIQ-VIGA  172 (307)
Q Consensus        95 ~s~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~-~i~~  172 (307)
                      ..+.++++|.+.++ .+++..+..++. +++|++|++++|..+++.++..++..||+|++|++++|. +++..+. .+..
T Consensus        68 ~~c~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          68 SQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             TTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HhCCCccccccccc-CCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            34567777777665 466766666653 677777777777777777777777777777777777764 4565554 3445


Q ss_pred             cCCCCceEEeecc---CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCCcCCCc
Q 037159          173 NCKNFSMLKVMFS---FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHCLLGQI  239 (307)
Q Consensus       173 ~c~~L~~L~l~~~---~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C~~i~~  239 (307)
                      .|++|+.|+++++   +++..+..++..+|+|++|++++|. ++++++..+. .||+|++|++++|..++.
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCG
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCCh
Confidence            5677777777654   5666677776677777777777765 7777665543 477777777777777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.1e-17  Score=139.36  Aligned_cols=136  Identities=17%  Similarity=0.154  Sum_probs=120.6

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH-hcCCCCCeEEecCCC--CCHHHHHHHHhc
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI-QWWKGLESLTVPFIS--NASSIIQVIGAN  173 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~--~~~~~l~~i~~~  173 (307)
                      .+++++|+++++..+++..+..++..||+|++|++++|..+++.++...+ ..+++|++|+++++.  +++..+..++..
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            57899999999999999999999999999999999999999999887655 446899999999874  689999999999


Q ss_pred             CCCCceEEeecc--CCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHcCCCCcEEeccCC
Q 037159          174 CKNFSMLKVMFS--FDLDFAMSLFMSIPELKVLSLRSSI-VDKNALNLILTLMGSLEALNISHC  234 (307)
Q Consensus       174 c~~L~~L~l~~~--~~~~~~~~l~~~~p~L~~L~L~~~~-it~~~l~~l~~~~~~L~~L~l~~C  234 (307)
                      ||+|++|+++++  +++..+..+. .+|+|++|+|++|. ++++++..+ ..+|+|++|++++|
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC
Confidence            999999999875  6666666665 79999999999987 999998775 56999999999999

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=89.96  Aligned_cols=41  Identities=34%  Similarity=0.791  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcc
Q 037159           11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLW   52 (307)
Q Consensus        11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw   52 (307)
                      |+.||+||+.+||+||+.+|+++ +++|||+|++++.+|.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~-~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCCcccC
Confidence            78999999999999999999998 999999999999999998

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.09  E-value=3.5e-09  Score=82.24  Aligned_cols=122  Identities=14%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH---hcCCCCCeEEecCCCCCHHHHHHHH---hcCCCCceEEeecc-
Q 037159          113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSAI---QWWKGLESLTVPFISNASSIIQVIG---ANCKNFSMLKVMFS-  185 (307)
Q Consensus       113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~---~~~~~L~~L~L~~~~~~~~~l~~i~---~~c~~L~~L~l~~~-  185 (307)
                      ++.+..+....|+|++|+|++...+++.++..++   ...++|++|+|++|.+++.+...++   ...+.++.|.+.++ 
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            5667888888999999999987779998866654   5788999999999999888777765   34689999999776 


Q ss_pred             CCHHHHHHHH---hcCCCCCEEEec--CCCCCHHHHHHH---HHcCCCCcEEeccCC
Q 037159          186 FDLDFAMSLF---MSIPELKVLSLR--SSIVDKNALNLI---LTLMGSLEALNISHC  234 (307)
Q Consensus       186 ~~~~~~~~l~---~~~p~L~~L~L~--~~~it~~~l~~l---~~~~~~L~~L~l~~C  234 (307)
                      .+++++..++   ...++|+.+.|.  ++.+++++...+   +..+++|+.|++...
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            6777777665   456889987665  456999875544   558999999999754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.07  E-value=2.4e-09  Score=83.37  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCeEEecCCCCCHHHHHHHH---hcCCCCceEEeecc-
Q 037159          113 DEHLVYAATRFPMVKHLALPPCNEITVDGFRSA---IQWWKGLESLTVPFISNASSIIQVIG---ANCKNFSMLKVMFS-  185 (307)
Q Consensus       113 d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~l~~i~---~~c~~L~~L~l~~~-  185 (307)
                      ++.+..+....|+|++|+|+++..++++++..+   +...+.|++|+|++|.+++.....++   +.++.|++|+++++ 
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            466788888899999999997767888876655   45678899999999998887766665   34689999999776 


Q ss_pred             CCHHHHHHHHhc---CCCCCEEEecCCC---CCHHH---HHHHHHcCCCCcEEeccCCc
Q 037159          186 FDLDFAMSLFMS---IPELKVLSLRSSI---VDKNA---LNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       186 ~~~~~~~~l~~~---~p~L~~L~L~~~~---it~~~---l~~l~~~~~~L~~L~l~~C~  235 (307)
                      +++.++..+++.   .+.|++|+|.++.   +.+++   +...+...+.|+.|+++...
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            788887777544   4679999998875   55666   45556678999999997653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.1e-10  Score=101.64  Aligned_cols=122  Identities=14%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHH---HHhcCCCCCeEEecCCCCCHHHHHHHHhc--
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRS---AIQWWKGLESLTVPFISNASSIIQVIGAN--  173 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~--  173 (307)
                      +++.|+++. ..+++..+..+.+.++++++|+|++|. +++.++..   .+..+++|++|+|++|.+++.++..+++.  
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            467778765 667777777777888888999998875 78776544   35778889999998888888777777653  


Q ss_pred             --CCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHHHc
Q 037159          174 --CKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLILTL  222 (307)
Q Consensus       174 --c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~  222 (307)
                        .++|++|+++++ +++.++..++   ..+++|++|+|++|.+++.++..+...
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~  135 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  135 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhc
Confidence              357888888765 5555444443   467888888888888888877666554

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.3e-11  Score=88.05  Aligned_cols=48  Identities=25%  Similarity=0.497  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhc-CCCCcceeeecCc
Q 037159           11 WQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAAS-RDPVLWETLDLNV   59 (307)
Q Consensus        11 w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~-~~p~lw~~i~l~~   59 (307)
                      ++.||+||+.+||+||+..|+++ |++|||+|++++ .+|.+|+++.+..
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~-~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHH-HTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            45799999999999999999998 999999999987 5699999886543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.02  E-value=9.6e-09  Score=89.10  Aligned_cols=113  Identities=13%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHH----HhcCCCCCeEEecCCCCCHHHHHHHH---hcCCCCceEEeecc-CCHHHHHH
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSA----IQWWKGLESLTVPFISNASSIIQVIG---ANCKNFSMLKVMFS-FDLDFAMS  193 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~l~~i~---~~c~~L~~L~l~~~-~~~~~~~~  193 (307)
                      .++.|+.|+|+.+. ++++++..+    +..+++|+.|+|++|.+++.+...++   ..|++|++|+++++ +++.++..
T Consensus       184 ~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            34555555555442 444443222    33455555555555555444433332   34455555555544 44444444


Q ss_pred             HHhc-----CCCCCEEEecCCCCCHHHHHHHHH----cCCCCcEEeccCCc
Q 037159          194 LFMS-----IPELKVLSLRSSIVDKNALNLILT----LMGSLEALNISHCL  235 (307)
Q Consensus       194 l~~~-----~p~L~~L~L~~~~it~~~l~~l~~----~~~~L~~L~l~~C~  235 (307)
                      ++..     .+.|++|++++|.++++++..+.+    ++++|+.|+|+++.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            4321     234555555555555555443332    34555555555543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.6e-10  Score=82.54  Aligned_cols=47  Identities=19%  Similarity=0.399  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeec
Q 037159           10 NWQNMHYDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDL   57 (307)
Q Consensus        10 ~w~~LP~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l   57 (307)
                      -.+.||+||+.+||+||+..|+++ +++|||+|+.++.++.+|+..-.
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~-~~~vcr~w~~l~~~~~lW~~~~~   64 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKCK   64 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHCCHHHHHHHHH
Confidence            367899999999999999999998 99999999999999999987643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=1.8e-08  Score=87.31  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=93.9

Q ss_pred             CCCccEEEeccCCCCCHHHHHHH------------HhhCCCccEEecCCCCCCCHHH---HHHHHhcCCCCCeEEecCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYA------------ATRFPMVKHLALPPCNEITVDG---FRSAIQWWKGLESLTVPFIS  161 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i------------~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~  161 (307)
                      ..+++++.++.+. +++.....+            ....+.|+.+.+++. .+++.+   +...+..++.|++|++++|.
T Consensus       120 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         120 HTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             CTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccchheeccccc-ccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhhhccccccccc
Confidence            4567777776543 344332222            224667777777754 355443   44456678889999999888


Q ss_pred             CCHHHHHHH----HhcCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCCCHHHHHHHHHc-----CCCCcE
Q 037159          162 NASSIIQVI----GANCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIVDKNALNLILTL-----MGSLEA  228 (307)
Q Consensus       162 ~~~~~l~~i----~~~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~it~~~l~~l~~~-----~~~L~~  228 (307)
                      +++..+..+    ...+++|+.|++++. +++.++..++   ..+++|++|+|++|.+++.++..++..     .+.|++
T Consensus       198 i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~  277 (344)
T d2ca6a1         198 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  277 (344)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCE
Confidence            877654432    346788999999765 5565555443   578899999999999999888777653     357999


Q ss_pred             EeccCCcCCC
Q 037159          229 LNISHCLLGQ  238 (307)
Q Consensus       229 L~l~~C~~i~  238 (307)
                      |+++++. ++
T Consensus       278 L~ls~N~-i~  286 (344)
T d2ca6a1         278 LRLQYNE-IE  286 (344)
T ss_dssp             EECCSSC-CB
T ss_pred             EECCCCc-CC
Confidence            9999875 44

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.4e-09  Score=93.28  Aligned_cols=109  Identities=10%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             CccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHH---hcCCCCceEEeecc-CCHHHHHHHHhcC--
Q 037159          125 MVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIG---ANCKNFSMLKVMFS-FDLDFAMSLFMSI--  198 (307)
Q Consensus       125 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~---~~c~~L~~L~l~~~-~~~~~~~~l~~~~--  198 (307)
                      +|+.|+++ |.++++.++..++..+++|+.|+|++|.+++..+..++   +.+++|++|++++. +++.++..+++.+  
T Consensus         3 ~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            45555554 34455555555555555555555555555554444443   34455555555443 3344444443322  


Q ss_pred             --CCCCEEEecCCCCCHHHHHHHH---HcCCCCcEEeccCC
Q 037159          199 --PELKVLSLRSSIVDKNALNLIL---TLMGSLEALNISHC  234 (307)
Q Consensus       199 --p~L~~L~L~~~~it~~~l~~l~---~~~~~L~~L~l~~C  234 (307)
                        ++|++|+|++|.+++.++..+.   ..+++|++|+++++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence              2455555555555554433322   23455555555544

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.8e-10  Score=82.18  Aligned_cols=42  Identities=26%  Similarity=0.439  Sum_probs=38.9

Q ss_pred             HHHHHHHHhcCChHHHhhHHhhhhHHHHHhcCCCCcceeeecC
Q 037159           16 YDILVKIFMALRVTDLIFAVSKVCSSWRAASRDPVLWETLDLN   58 (307)
Q Consensus        16 ~eiL~~If~~L~~~d~~~~~s~VCk~Wr~~~~~p~lw~~i~l~   58 (307)
                      +||+.+||+||+..|+++ +++|||+|+.++.++.+|+++...
T Consensus        20 ~EI~~~Ils~Ld~~dL~~-~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          20 DHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHh
Confidence            699999999999999999 999999999999999999987543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.65  E-value=2.6e-07  Score=71.42  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             HHHHHHHhcCCCCCeEEecCC-CCCHHHHHHHHh---cCCCCceEEeecc-CCHHHHHHHH---hcCCCCCEEEecCCCC
Q 037159          140 DGFRSAIQWWKGLESLTVPFI-SNASSIIQVIGA---NCKNFSMLKVMFS-FDLDFAMSLF---MSIPELKVLSLRSSIV  211 (307)
Q Consensus       140 ~~l~~~~~~~~~L~~L~L~~~-~~~~~~l~~i~~---~c~~L~~L~l~~~-~~~~~~~~l~---~~~p~L~~L~L~~~~i  211 (307)
                      +.+..+....|.|++|+|+++ .++++++..++.   .+++|++|+++++ +++..+..++   ...+.|++|+|++|.+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            457777888999999999985 578887777653   4588999999877 7776665554   3578999999999999


Q ss_pred             CHHHHHHHHHc---CCCCcEEeccCCcC
Q 037159          212 DKNALNLILTL---MGSLEALNISHCLL  236 (307)
Q Consensus       212 t~~~l~~l~~~---~~~L~~L~l~~C~~  236 (307)
                      +++|+..++..   .+.|++|+++++..
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            99998877655   47799999988754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.63  E-value=1.1e-06  Score=67.67  Aligned_cols=126  Identities=12%  Similarity=0.002  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHh---hCCCccEEecCCCCCCCHHHHHH---HHhcCCCCCeEEec
Q 037159           85 AMHILNNASILSCKTVKRLIFNYSIYLKDEHLVYAAT---RFPMVKHLALPPCNEITVDGFRS---AIQWWKGLESLTVP  158 (307)
Q Consensus        85 l~~~l~~~~~~s~~~l~~L~l~~~~~~~d~~l~~i~~---~~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~  158 (307)
                      +...+... ....+.+++|.++....++++.+..++.   .+++|++|+|+++ .+++.+...   .+...+.|+.|+++
T Consensus         5 i~~~l~~~-~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_           5 VEETLKRI-QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             HHHHHHHH-HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHH-HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhc
Confidence            44444443 3446799999998777889999887765   6789999999987 488776544   56678999999999


Q ss_pred             CCCCCHHHHHHHH---hcCCCCceEEeec---cCCHHHHHHHH---hcCCCCCEEEecCCCCC
Q 037159          159 FISNASSIIQVIG---ANCKNFSMLKVMF---SFDLDFAMSLF---MSIPELKVLSLRSSIVD  212 (307)
Q Consensus       159 ~~~~~~~~l~~i~---~~c~~L~~L~l~~---~~~~~~~~~l~---~~~p~L~~L~L~~~~it  212 (307)
                      ++.+++++...++   ..+++|+.++|..   .+++.+..+++   +..++|++|++..+...
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            9999998888777   4468899888853   26777766665   47899999999887643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.8e-09  Score=81.77  Aligned_cols=38  Identities=26%  Similarity=0.278  Sum_probs=16.8

Q ss_pred             cCCCCCEEEecCCCCCHH-HHHHHHHcCCCCcEEeccCCc
Q 037159          197 SIPELKVLSLRSSIVDKN-ALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~-~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+|+|++|++++|.+++- .+. -+..+|+|++|++++|.
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~-~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLD-PLASLKSLTYLCILRNP  123 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGG-GGGGCTTCCEEECCSSG
T ss_pred             cccccccceecccccccccccc-ccccccccchhhcCCCc
Confidence            345555555555544321 111 12344555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.9e-08  Score=77.69  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=85.3

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      ++++|++.++..-.-   ..+...+++|+.|+|+++. ++.  + ..+..+++|++|++++|.++.-. ..+...+++|+
T Consensus        19 ~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N~-i~~--l-~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~   90 (162)
T d1a9na_          19 RDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-IRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLT   90 (162)
T ss_dssp             SCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-CCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCC
T ss_pred             cCcEEECCCCCCCcc---CccccccccCCEEECCCCC-CCc--c-CCcccCcchhhhhcccccccCCC-ccccccccccc
Confidence            577888877542211   1233567899999999875 543  2 12568999999999999874311 12335679999


Q ss_pred             eEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHHH--HHHHHHcCCCCcEEecc
Q 037159          179 MLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKNA--LNLILTLMGSLEALNIS  232 (307)
Q Consensus       179 ~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~--l~~l~~~~~~L~~L~l~  232 (307)
                      .|++++. +.+ ..+..+ ..+|+|++|++.+|.++...  -..++..+|+|++||-.
T Consensus        91 ~L~L~~N~i~~~~~l~~l-~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceecccccccccccccc-ccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9999876 332 223333 47999999999999865432  13457789999999853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=1.3e-07  Score=69.34  Aligned_cols=101  Identities=17%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             cEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEE
Q 037159          127 KHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLS  205 (307)
Q Consensus       127 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~  205 (307)
                      |.|+|++.. ++.  +. -+..+++|++|+++++.+..-. ..+ ..+++|+.|++++. +..-  ..+ ..+|+|++|+
T Consensus         1 R~L~Ls~n~-l~~--l~-~l~~l~~L~~L~ls~N~l~~lp-~~~-~~l~~L~~L~l~~N~i~~l--~~~-~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKD-LTV--LC-HLEQLLLVTHLDLSHNRLRALP-PAL-AALRCLEVLQASDNALENV--DGV-ANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSC-CSS--CC-CGGGGTTCCEEECCSSCCCCCC-GGG-GGCTTCCEEECCSSCCCCC--GGG-TTCSSCCEEE
T ss_pred             CEEEcCCCC-CCC--Cc-ccccCCCCCEEECCCCccCcch-hhh-hhhhccccccccccccccc--Ccc-ccccccCeEE
Confidence            355666543 332  11 1346667777777776653210 122 34567777777654 2211  122 3677788888


Q ss_pred             ecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          206 LRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       206 L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +++|.+++-.-..-+..+|+|+.|++++...
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            8777765432112245677788888777544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.14  E-value=4.1e-08  Score=78.36  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=48.5

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCC
Q 037159          123 FPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPEL  201 (307)
Q Consensus       123 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L  201 (307)
                      .++|+.|+|+++. +++  +. .+..+++|+.|+|++|.++.  +..+...+++|+.|++++. +..-  ..+ ..+++|
T Consensus        47 L~~L~~L~Ls~n~-I~~--i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l--~~~-~~l~~L  117 (198)
T d1m9la_          47 LKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SGI-EKLVNL  117 (198)
T ss_dssp             TTTCCEEECSEEE-ESC--CC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCH--HHH-HHHHHS
T ss_pred             ccccceeECcccC-CCC--cc-cccCCccccChhhccccccc--cccccccccccccccccccccccc--ccc-cccccc
Confidence            4566666665432 221  11 13345566666666655421  0111112245666666443 2211  112 245566


Q ss_pred             CEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          202 KVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       202 ~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      +.|++++|.+++-.-..-+..+|+|+.|+++++.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCc
Confidence            6666666665543222234556666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=9.8e-07  Score=69.99  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++|+.|+++++....-.    .+..++.|+.|+++++.....  .. ...+++|+.|.+++. +..  +..+ ..+++
T Consensus        82 ~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~n~l~~--~~~l-~~~~~  151 (199)
T d2omxa2          82 NLTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISD--ISAL-SGLTS  151 (199)
T ss_dssp             TCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCC--CGGG-TTCTT
T ss_pred             CCccccccccccccccccc----ccccccccccccccccccccc--cc-cchhhhhHHhhhhhhhhcc--cccc-ccccc
Confidence            3455555555544322211    133455555555555443110  01 123455556655443 111  1111 24566


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      |+.|++.+|.+++-  .. +.++++|++|++++|.
T Consensus       152 L~~L~l~~n~l~~l--~~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         152 LQQLNFSSNQVTDL--KP-LANLTTLERLDISSNK  183 (199)
T ss_dssp             CSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccCC--cc-ccCCCCCCEEECCCCC
Confidence            66666666655431  11 3456666666666663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=3.5e-07  Score=67.03  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHH-HHHHHHhcC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLD-FAMSLFMSI  198 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~-~~~~l~~~~  198 (307)
                      ..+++|++|++++.. ++.  +...+..+++|+.|+++++.++.-  ..+ ..+++|+.|++++. +.+. .+..+ ..+
T Consensus        17 ~~l~~L~~L~ls~N~-l~~--lp~~~~~l~~L~~L~l~~N~i~~l--~~~-~~l~~L~~L~l~~N~i~~~~~~~~l-~~~   89 (124)
T d1dcea3          17 EQLLLVTHLDLSHNR-LRA--LPPALAALRCLEVLQASDNALENV--DGV-ANLPRLQELLLCNNRLQQSAAIQPL-VSC   89 (124)
T ss_dssp             GGGTTCCEEECCSSC-CCC--CCGGGGGCTTCCEEECCSSCCCCC--GGG-TTCSSCCEEECCSSCCCSSSTTGGG-GGC
T ss_pred             ccCCCCCEEECCCCc-cCc--chhhhhhhhccccccccccccccc--Ccc-ccccccCeEECCCCccCCCCCchhh-cCC
Confidence            457899999999764 542  333456899999999999987432  233 46799999999765 3221 22233 479


Q ss_pred             CCCCEEEecCCCCCHHH--HHHHHHcCCCCcEEe
Q 037159          199 PELKVLSLRSSIVDKNA--LNLILTLMGSLEALN  230 (307)
Q Consensus       199 p~L~~L~L~~~~it~~~--l~~l~~~~~~L~~L~  230 (307)
                      |+|++|++++|.+++..  ...+...+|+|+.|.
T Consensus        90 ~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          90 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCEEECCCCcCCcCccHHHHHHHHCcCcceEe
Confidence            99999999999876432  345677789998763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.95  E-value=4.2e-07  Score=72.25  Aligned_cols=123  Identities=16%  Similarity=0.106  Sum_probs=82.2

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      .+++.|+++.+.. ++  +..+ ..+++|+.|+|+++. ++.  +..+...+++|+.|++++|.++.  +..+ ..+++|
T Consensus        48 ~~L~~L~Ls~n~I-~~--i~~l-~~l~~L~~L~Ls~N~-i~~--i~~~~~~~~~L~~L~l~~N~i~~--l~~~-~~l~~L  117 (198)
T d1m9la_          48 KACKHLALSTNNI-EK--ISSL-SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQIAS--LSGI-EKLVNL  117 (198)
T ss_dssp             TTCCEEECSEEEE-SC--CCCH-HHHTTCCEEECCEEE-ECS--CSSHHHHHHHCCEEECSEEECCC--HHHH-HHHHHS
T ss_pred             cccceeECcccCC-CC--cccc-cCCccccChhhcccc-ccc--ccccccccccccccccccccccc--cccc-cccccc
Confidence            4788888876532 22  1112 357899999999764 432  12233345689999999998754  2333 345899


Q ss_pred             ceEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCHHH---------HHHHHHcCCCCcEEec
Q 037159          178 SMLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDKNA---------LNLILTLMGSLEALNI  231 (307)
Q Consensus       178 ~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~~~---------l~~l~~~~~~L~~L~l  231 (307)
                      +.|++++. +.+ ..+..+ ..+|+|+.|+|++|.++...         -..++..+|+|+.||-
T Consensus       118 ~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             SEEEESEEECCCHHHHHHH-TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccccccchhccccccccc-cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            99999775 443 333444 48999999999998754322         1245778999999984

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.84  E-value=9.7e-06  Score=63.99  Aligned_cols=124  Identities=16%  Similarity=0.117  Sum_probs=82.0

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++++.+..+..-+-+.    .+.+++|+.|+++++. +++  +. .+..+++|++|+++++.+...  ..+ ..+++|+
T Consensus        41 ~l~~L~l~~~~i~~l~~----l~~l~nL~~L~Ls~N~-l~~--~~-~l~~l~~L~~L~l~~n~~~~~--~~l-~~l~~L~  109 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQ-LTD--IT-PLKNLTKLVDILMNNNQIADI--TPL-ANLTNLT  109 (199)
T ss_dssp             TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCC--CG-GGTTCTTCCEEECCSSCCCCC--GGG-TTCTTCS
T ss_pred             CCCEEECCCCCCCCccc----cccCCCcCcCcccccc-ccC--cc-cccCCcccccccccccccccc--ccc-ccccccc
Confidence            67777776643322111    2458999999999874 543  11 256889999999998875321  122 4678999


Q ss_pred             eEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|+++++.... ... ...+++|+.|++++|.++.-  . -+..+++|+.|++.+|...+
T Consensus       110 ~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~--~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         110 GLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccccc-ccc-cchhhhhHHhhhhhhhhccc--c-cccccccccccccccccccC
Confidence            99997662111 111 24689999999999986642  2 24678999999999886543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.7e-06  Score=63.71  Aligned_cols=86  Identities=15%  Similarity=0.035  Sum_probs=55.6

Q ss_pred             HHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-CCH-HHHHHHHhcCCCCCEEEecCCCCCH------
Q 037159          143 RSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-FDL-DFAMSLFMSIPELKVLSLRSSIVDK------  213 (307)
Q Consensus       143 ~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~~~-~~~~~l~~~~p~L~~L~L~~~~it~------  213 (307)
                      ..+...+++|++|+|++|.+++ ..+......|++|+.|++++. +.+ .....+  ..++|+.|++.+|.++.      
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCcCcCcccch
Confidence            3344568888888888887643 223334456788888888765 222 222222  35578999999887652      


Q ss_pred             HHHHHHHHcCCCCcEEe
Q 037159          214 NALNLILTLMGSLEALN  230 (307)
Q Consensus       214 ~~l~~l~~~~~~L~~L~  230 (307)
                      .....+.+.+|+|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence            23556777889999886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.75  E-value=1.1e-05  Score=64.94  Aligned_cols=57  Identities=12%  Similarity=0.153  Sum_probs=31.1

Q ss_pred             cCCCCceEEeeccC-CHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCc
Q 037159          173 NCKNFSMLKVMFSF-DLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCL  235 (307)
Q Consensus       173 ~c~~L~~L~l~~~~-~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~  235 (307)
                      .+++|+.|.++++. .+.  ..+ ..+++|++|+|++|.+++  +.. +.++|+|++|++++|.
T Consensus       149 ~~~~L~~L~l~~n~~~~~--~~l-~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDL--TPL-ANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSC
T ss_pred             cccccccccccccccccc--hhh-cccccceecccCCCccCC--Chh-hcCCCCCCEEECcCCc
Confidence            34556666665441 111  112 356777777777776554  211 4556777777777763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.70  E-value=1.6e-05  Score=63.30  Aligned_cols=123  Identities=16%  Similarity=0.168  Sum_probs=84.5

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..++++|+++.+.. ++  +..+ ..+++|+.|+++++. +++  +. .+..+++|+.|+++++.+..  +..+ ..+++
T Consensus        67 l~~L~~L~L~~n~i-~~--l~~~-~~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~~~~~~--~~~l-~~l~~  135 (210)
T d1h6ta2          67 LPNVTKLFLNGNKL-TD--IKPL-ANLKNLGWLFLDENK-VKD--LS-SLKDLKKLKSLSLEHNGISD--INGL-VHLPQ  135 (210)
T ss_dssp             CTTCCEEECCSSCC-CC--CGGG-TTCTTCCEEECCSSC-CCC--GG-GGTTCTTCCEEECTTSCCCC--CGGG-GGCTT
T ss_pred             CCCCCEEeCCCccc-cC--cccc-ccCcccccccccccc-ccc--cc-cccccccccccccccccccc--cccc-ccccc
Confidence            45788998887643 32  1122 457899999998764 553  22 35678999999999887532  1222 45688


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      |+.+.+++. +.+..   ....+++|+.++++++.+++  +.. +.++++|+.|++++|..
T Consensus       136 l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         136 LESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             CCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccc---cccccccccccccccccccc--ccc-ccCCCCCCEEECCCCCC
Confidence            999998765 22211   12468999999999998764  222 56789999999998854

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.63  E-value=2.3e-05  Score=62.33  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      .++.+.++.+..-+-..    .+.+++|++|+|+++. +++  +. .+..+++|+.|++++|.+++  +..+ ..+++|+
T Consensus        47 ~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n~-i~~--l~-~~~~l~~L~~L~l~~n~i~~--l~~l-~~l~~L~  115 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNK-LTD--IK-PLANLKNLGWLFLDENKVKD--LSSL-KDLKKLK  115 (210)
T ss_dssp             TCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSC-CCC--CG-GGTTCTTCCEEECCSSCCCC--GGGG-TTCTTCC
T ss_pred             CccEEECcCCCCCCchh----HhhCCCCCEEeCCCcc-ccC--cc-ccccCccccccccccccccc--cccc-ccccccc
Confidence            56777776543322222    2568999999998774 543  22 24678999999999988754  2222 4468999


Q ss_pred             eEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|++.++... .+..+ ..+++|+.+.+.++.+++..   ....+++|+.++++++...+
T Consensus       116 ~L~l~~~~~~-~~~~l-~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         116 SLSLEHNGIS-DINGL-VHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             EEECTTSCCC-CCGGG-GGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCC
T ss_pred             cccccccccc-ccccc-cccccccccccccccccccc---cccccccccccccccccccc
Confidence            9999765211 11122 47889999999998877532   24568999999999886544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.46  E-value=3.4e-05  Score=61.95  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             HhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCC
Q 037159          146 IQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMG  224 (307)
Q Consensus       146 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~  224 (307)
                      +..+++|++|+++++.+.+..  . ...+++|+.|+++++ +.+  +..+ ..+|+|++|+|++|.+++-  .. +.+++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~l~~--l~~l-~~l~~L~~L~Ls~N~lt~i--~~-l~~l~  217 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISD--ISPL-ASLPNLIEVHLKNNQISDV--SP-LANTS  217 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC--CGGG-GGCTTCCEEECTTSCCCBC--GG-GTTCT
T ss_pred             hccccccccccccccccccch--h-hcccccceecccCCCccCC--Chhh-cCCCCCCEEECcCCcCCCC--cc-cccCC
Confidence            457889999999998764321  1 246799999999876 332  1223 4899999999999998852  22 57899


Q ss_pred             CCcEEeccC
Q 037159          225 SLEALNISH  233 (307)
Q Consensus       225 ~L~~L~l~~  233 (307)
                      +|+.|+|++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            999999973

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.44  E-value=5.3e-05  Score=65.22  Aligned_cols=125  Identities=14%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.+.+..+....-..    ...+++|+.|+++++. ++.  +. .+..++.++.+.+..+.+...  .. ...+++
T Consensus       240 l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~~~-l~~--~~-~~~~~~~l~~l~~~~n~l~~~--~~-~~~~~~  308 (384)
T d2omza2         240 LTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISN--IS-PLAGLTALTNLELNENQLEDI--SP-ISNLKN  308 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CG-GGTTCTTCSEEECCSSCCSCC--GG-GGGCTT
T ss_pred             ccccchhccccCccCCCCc----ccccccCCEeeccCcc-cCC--CC-ccccccccccccccccccccc--cc-cchhcc
Confidence            4578888887654322111    2357899999998664 332  11 245788899999988876431  11 356789


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ++.|++++. +.+.  .. ...+|+|++|++++|.+++  +.. +.++|+|++|++++|...+
T Consensus       309 l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n~l~~--l~~-l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         309 LTYLTLYFNNISDI--SP-VSSLTKLQRLFFANNKVSD--VSS-LANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CSEEECCSSCCSCC--GG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCB
T ss_pred             cCeEECCCCCCCCC--cc-cccCCCCCEEECCCCCCCC--Chh-HcCCCCCCEEECCCCcCCC
Confidence            999999765 2221  11 3478999999999998775  222 4678999999998886443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.39  E-value=1.5e-06  Score=68.52  Aligned_cols=110  Identities=13%  Similarity=0.035  Sum_probs=65.8

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCC
Q 037159          124 PMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELK  202 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~  202 (307)
                      +++++|+|++.. ++...-...+..+++|++|+|+++.+....... ....++|+.|++++. +..-. ......+++|+
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEIS-NKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCC
T ss_pred             CCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccc-cccccccceeeeccccccccC-HHHHhCCCccc
Confidence            468888888654 332111123456788888888887653222122 234578888888765 21100 11124688999


Q ss_pred             EEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          203 VLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       203 ~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      +|+|++|.++.-. ...+..+++|++|+|++....
T Consensus       106 ~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCCccccccC-HHHhcCCcccccccccccccc
Confidence            9999998866311 122456788999999876554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2.9e-05  Score=59.17  Aligned_cols=87  Identities=18%  Similarity=0.127  Sum_probs=59.5

Q ss_pred             HHHHHhhCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCeEEecCCCCCH-HHHHHHHhcCCCCceEEeecc-C-----C
Q 037159          116 LVYAATRFPMVKHLALPPCNEITV-DGFRSAIQWWKGLESLTVPFISNAS-SIIQVIGANCKNFSMLKVMFS-F-----D  187 (307)
Q Consensus       116 l~~i~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~c~~L~~L~l~~~-~-----~  187 (307)
                      +..+...+++|+.|+|+++. ++. .++...+..+++|+.|+|++|.+.+ ..+..+.  ..+|+.|.+.+. +     .
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~--~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK--GLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT--TCCCSSCCCTTSTTSSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhh--ccccceeecCCCCcCcCccc
Confidence            34455678999999999775 443 3455566789999999999998743 3333332  357899998764 1     1


Q ss_pred             -HHHHHHHHhcCCCCCEEE
Q 037159          188 -LDFAMSLFMSIPELKVLS  205 (307)
Q Consensus       188 -~~~~~~l~~~~p~L~~L~  205 (307)
                       ......+.+.+|+|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence             233455667899999886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.32  E-value=0.00013  Score=62.72  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=86.1

Q ss_pred             CCCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           97 CKTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        97 ~~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      ..+++.+.+..+..-+-.   . ...+++|+.|++.++. ++.  +. .+..+++|++|+++++.+...  .. ...++.
T Consensus       218 ~~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~-l~~--~~-~~~~~~~L~~L~l~~~~l~~~--~~-~~~~~~  286 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG---T-LASLTNLTDLDLANNQ-ISN--LA-PLSGLTKLTELKLGANQISNI--SP-LAGLTA  286 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSC-CCC--CG-GGTTCTTCSEEECCSSCCCCC--GG-GTTCTT
T ss_pred             cCCCCEEECCCCCCCCcc---h-hhcccccchhccccCc-cCC--CC-cccccccCCEeeccCcccCCC--Cc-cccccc
Confidence            457888888776433221   1 2468999999999875 443  11 256789999999998876321  11 345688


Q ss_pred             CceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          177 FSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       177 L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      ++.+.++.. +..  +.. ...++++++|+++++.+++-  .. +..+|+|++|++++|..
T Consensus       287 l~~l~~~~n~l~~--~~~-~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         287 LTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             CSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--ccc-cchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCCCC
Confidence            999998765 221  111 35789999999999998752  22 57799999999999953

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=4.7e-05  Score=63.24  Aligned_cols=84  Identities=13%  Similarity=0.019  Sum_probs=36.3

Q ss_pred             hcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCC
Q 037159          147 QWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGS  225 (307)
Q Consensus       147 ~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~  225 (307)
                      ..+++|++|+++++.+..-.-. ....+++|+.|.++.. ........ ...+++|++|++++|.++... ...+..+++
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~-~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~  226 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALP-TEALAPLRA  226 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-HHHHTTCTT
T ss_pred             ccccchhhcccccCcccccchh-hhccccccchhhhhhccccccChhH-hhhhhhccccccccccccccc-ccccccccc
Confidence            3455555555555543211111 1123455555555433 11100111 124556666666665543211 123345566


Q ss_pred             CcEEeccC
Q 037159          226 LEALNISH  233 (307)
Q Consensus       226 L~~L~l~~  233 (307)
                      |++|++++
T Consensus       227 L~~L~l~~  234 (284)
T d1ozna_         227 LQYLRLND  234 (284)
T ss_dssp             CCEEECCS
T ss_pred             cCEEEecC
Confidence            66666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.73  E-value=2.7e-05  Score=60.96  Aligned_cols=88  Identities=10%  Similarity=0.030  Sum_probs=61.1

Q ss_pred             CCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcE
Q 037159          150 KGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEA  228 (307)
Q Consensus       150 ~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~  228 (307)
                      +++++|+|+++.++...-.......++|+.|++++. +... .......+++|++|+|++|.++.-. ...+.++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccccccC-HHHHhCCCcccc
Confidence            589999999998753222223345689999999765 2211 1122346899999999999976311 123567999999


Q ss_pred             EeccCCcCCCc
Q 037159          229 LNISHCLLGQI  239 (307)
Q Consensus       229 L~l~~C~~i~~  239 (307)
                      |+|+++..-+.
T Consensus       107 L~L~~N~l~~i  117 (192)
T d1w8aa_         107 LNLYDNQISCV  117 (192)
T ss_dssp             EECCSSCCCEE
T ss_pred             cccCCcccccc
Confidence            99999876553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.00011  Score=61.36  Aligned_cols=107  Identities=13%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP  199 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p  199 (307)
                      ..+++|+.+++.++. ++.  +.  ...+++|++|+++++......... ...++.++.|.++++ +...... ....++
T Consensus       147 ~~l~~L~~l~l~~n~-l~~--l~--~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~  219 (305)
T d1xkua_         147 QGMKKLSYIRIADTN-ITT--IP--QGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNG-SLANTP  219 (305)
T ss_dssp             GGCTTCCEEECCSSC-CCS--CC--SSCCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTT-TGGGST
T ss_pred             ccccccCccccccCC-ccc--cC--cccCCccCEEECCCCcCCCCChhH-hhccccccccccccccccccccc-cccccc
Confidence            346677888877654 221  10  123577888888777643222222 245677888888655 2211111 223678


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      +|++|+|++|.++.  +..-+..+++|++|+|+++..
T Consensus       220 ~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         220 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCC
T ss_pred             cceeeecccccccc--cccccccccCCCEEECCCCcc
Confidence            88888888887652  222245678888888888753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.63  E-value=4.5e-06  Score=70.65  Aligned_cols=132  Identities=15%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             CccEEEeccCCCCCHHHH-HHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           99 TVKRLIFNYSIYLKDEHL-VYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l-~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      ++++|++.+........+ ..+ ..+++|++|+|+++..++. .+...+.++++|++|+|+++.+...... .....++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCcccccccccccccccc-ccccccccccccchhhhccccccccccc-cccchhhh
Confidence            577777766432211001 122 3478999999987554432 1333467899999999999876322211 23456889


Q ss_pred             ceEEeeccC-CHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCC-cEEeccCCc
Q 037159          178 SMLKVMFSF-DLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSL-EALNISHCL  235 (307)
Q Consensus       178 ~~L~l~~~~-~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L-~~L~l~~C~  235 (307)
                      +.++++... .......+ ..++.|+.++++++.++.. +......++.+ +.++++++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccccccCchhh-ccCcccceeeccccccccc-ccccccccccccccccccccc
Confidence            999887541 11111122 4788999999998876532 11122334444 677776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=8.3e-05  Score=61.14  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=24.5

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      .+++|+.|++++|.++.-.. ..+..+++|++|+|+++..-
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred             ccccchhcccccccccccCc-cccccccccceeecccCCCc
Confidence            46677777777776553211 22345677777777777543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=7.7e-05  Score=61.34  Aligned_cols=129  Identities=17%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             CccEEEeccCCCC--CHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCC
Q 037159           99 TVKRLIFNYSIYL--KDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKN  176 (307)
Q Consensus        99 ~l~~L~l~~~~~~--~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~  176 (307)
                      +++.|+++.+..-  ....+    ..+++|+.|+|+++. ++.  +. ....+++|+.|+|++|.+...  .......++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f----~~l~~L~~L~L~~N~-l~~--l~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~  101 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATL----MPYTRLTQLNLDRAE-LTK--LQ-VDGTLPVLGTLDLSHNQLQSL--PLLGQTLPA  101 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGG----TTCTTCCEEECTTSC-CCE--EE-CCSCCTTCCEEECCSSCCSSC--CCCTTTCTT
T ss_pred             CCCEEECcCCcCCCcCHHHh----hcccccccccccccc-ccc--cc-ccccccccccccccccccccc--ccccccccc
Confidence            5677777664321  11112    357899999999764 542  11 235789999999999876321  123355689


Q ss_pred             CceEEeeccCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          177 FSMLKVMFSFDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       177 L~~L~l~~~~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      |+.|++++.............+++|+.|.+.++.++.-. ......+++|+.|+++++....
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccc
Confidence            999999765211111112246889999999999865311 1234568999999999986544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.26  E-value=3.1e-05  Score=65.24  Aligned_cols=110  Identities=14%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             CCccEEecCCCCCCCHH-HHHHHHhcCCCCCeEEecC-CCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          124 PMVKHLALPPCNEITVD-GFRSAIQWWKGLESLTVPF-ISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      .+++.|+|+++. ++.. .+...+..+++|++|+|++ +.++...-..++ .+++|++|++++. +... .......+++
T Consensus        50 ~~v~~L~L~~~~-l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGA-IPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEE-CCGGGGGCTT
T ss_pred             EEEEEEECCCCC-CCCCCCCChHHhcCccccccccccccccccccccccc-cccccchhhhcccccccc-ccccccchhh
Confidence            379999999764 3211 2334567899999999987 444322222343 4699999999865 2111 1112347899


Q ss_pred             CCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCC
Q 037159          201 LKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLG  237 (307)
Q Consensus       201 L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i  237 (307)
                      |+.+++.++.+... +..-+..+++|+.++++++...
T Consensus       127 L~~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         127 LVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             CCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred             hccccccccccccc-CchhhccCcccceeeccccccc
Confidence            99999999873321 1123567999999999988654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00035  Score=57.69  Aligned_cols=129  Identities=14%  Similarity=0.029  Sum_probs=85.0

Q ss_pred             hhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCC
Q 037159          121 TRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIP  199 (307)
Q Consensus       121 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p  199 (307)
                      ..+++|+.|++.++.....  .......+++|+.++++++.++.-. ......+++|+.|++++. +..-...+ ...++
T Consensus       102 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l~~~~-f~~l~  177 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPERA-FRGLH  177 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTTT-TTTCT
T ss_pred             cccccCCEEecCCcccccc--cccccchhcccchhhhccccccccC-hhHhccccchhhcccccCcccccchhh-hcccc
Confidence            3578999999997652211  1123456789999999998763211 122345789999999875 22111112 23789


Q ss_pred             CCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCCcCCCCCCchhhhhhhHHHHHHhhcchhhh
Q 037159          200 ELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQIPQFPGPLLAIEQLDNFILGKASRLREFF  267 (307)
Q Consensus       200 ~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  267 (307)
                      +|++|.+.+|.++.-. ...+.++++|++|+++++...+.             ........++|+.+.
T Consensus       178 ~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~-------------~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSAL-------------PTEALAPLRALQYLR  231 (284)
T ss_dssp             TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCC-------------CHHHHTTCTTCCEEE
T ss_pred             ccchhhhhhccccccC-hhHhhhhhhcccccccccccccc-------------cccccccccccCEEE
Confidence            9999999999876422 23457789999999999887653             334445555666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.10  E-value=0.00016  Score=60.41  Aligned_cols=129  Identities=13%  Similarity=0.003  Sum_probs=81.6

Q ss_pred             CCccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCC
Q 037159           98 KTVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNF  177 (307)
Q Consensus        98 ~~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L  177 (307)
                      ..++.+.+..+....-.     ...+++|+.|++.++.. +.. ....+..++.++.|+++++.+...... ....+++|
T Consensus       150 ~~L~~l~l~~n~l~~l~-----~~~~~~L~~L~l~~n~~-~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L  221 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP-----QGLPPSLTELHLDGNKI-TKV-DAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHL  221 (305)
T ss_dssp             TTCCEEECCSSCCCSCC-----SSCCTTCSEEECTTSCC-CEE-CTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTC
T ss_pred             cccCccccccCCccccC-----cccCCccCEEECCCCcC-CCC-ChhHhhccccccccccccccccccccc-cccccccc
Confidence            35666666543321100     12368999999987652 221 123456889999999999876432222 22467999


Q ss_pred             ceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHH---HH--HHHHHcCCCCcEEeccCCcC
Q 037159          178 SMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKN---AL--NLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       178 ~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~---~l--~~l~~~~~~L~~L~l~~C~~  236 (307)
                      ++|+++++ +.. -...+ ..+++|++|+|++|.|+.-   .+  .......++|+.|++++...
T Consensus       222 ~~L~L~~N~L~~-lp~~l-~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         222 RELHLNNNKLVK-VPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCSS-CCTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eeeecccccccc-ccccc-ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99999876 221 01123 3789999999999987641   11  11234568899999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.00055  Score=51.37  Aligned_cols=38  Identities=24%  Similarity=0.169  Sum_probs=18.8

Q ss_pred             cCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcC
Q 037159          197 SIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLL  236 (307)
Q Consensus       197 ~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~  236 (307)
                      .+++|++|+|++|.++.-.- .++. ..+|+.|+|++...
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~-~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          78 FTPRLSRLNLSFNALESLSW-KTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCSCCCEEECCSSCCSCCCS-TTTC-SCCCCEEECCSSCC
T ss_pred             ccccccceeccCCCCcccCh-hhhc-cccccccccCCCcc
Confidence            56666666666666441000 1111 23566666665443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.96  E-value=0.0033  Score=52.54  Aligned_cols=115  Identities=18%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             CccEEEeccCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCc
Q 037159           99 TVKRLIFNYSIYLKDEHLVYAATRFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFS  178 (307)
Q Consensus        99 ~l~~L~l~~~~~~~d~~l~~i~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~  178 (307)
                      +++.|+++... ++.     +-+..++|++|+|++. +++.     +....++|++|+++++.++.     +...-+.|+
T Consensus        39 ~l~~LdLs~~~-L~~-----lp~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~l~~n~l~~-----l~~lp~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLG-LSS-----LPELPPHLESLVASCN-SLTE-----LPELPQSLKSLLVDNNNLKA-----LSDLPPLLE  101 (353)
T ss_dssp             TCSEEECTTSC-CSC-----CCSCCTTCSEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSC-----CCSCCTTCC
T ss_pred             CCCEEEeCCCC-CCC-----CCCCCCCCCEEECCCC-CCcc-----cccchhhhhhhhhhhcccch-----hhhhccccc
Confidence            56667765532 111     1123467778877743 3441     12234577777777765421     111124577


Q ss_pred             eEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          179 MLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       179 ~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      .|++++. +..  +... ..+++|++|++.++.++..     ....+.+..+++..+....
T Consensus       102 ~L~L~~n~l~~--lp~~-~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~~~~~~~~~  154 (353)
T d1jl5a_         102 YLGVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQLEE  154 (353)
T ss_dssp             EEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS
T ss_pred             ccccccccccc--ccch-hhhccceeecccccccccc-----ccccccccchhhccccccc
Confidence            7777654 111  0111 2567777777777664421     1224556666665554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0013  Score=49.16  Aligned_cols=87  Identities=11%  Similarity=0.007  Sum_probs=52.7

Q ss_pred             hCCCccEEecCCCCCCCHHHHHHHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc-CCHHHHHHHHhcCCC
Q 037159          122 RFPMVKHLALPPCNEITVDGFRSAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS-FDLDFAMSLFMSIPE  200 (307)
Q Consensus       122 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~  200 (307)
                      ..++|++|++.+...++.-. ...+..+++|+.|+++++.+..-.-. .....++|++|+|++. +.. ....+. ..++
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~Ls~N~l~~-l~~~~~-~~~~  104 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALES-LSWKTV-QGLS  104 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSC-CCSTTT-CSCC
T ss_pred             CccccCeeecCCCccccccC-chhhccccccCcceeeccccCCcccc-cccccccccceeccCCCCcc-cChhhh-cccc
Confidence            35788888887554343211 02245788999999998876322112 2245689999999765 210 001112 2457


Q ss_pred             CCEEEecCCCCC
Q 037159          201 LKVLSLRSSIVD  212 (307)
Q Consensus       201 L~~L~L~~~~it  212 (307)
                      |++|+|++|.+.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.00095  Score=53.39  Aligned_cols=12  Identities=8%  Similarity=0.279  Sum_probs=5.9

Q ss_pred             CCCccEEecCCC
Q 037159          123 FPMVKHLALPPC  134 (307)
Q Consensus       123 ~~~L~~L~L~~~  134 (307)
                      +++|+.|+++++
T Consensus        52 l~~L~~L~ls~n   63 (242)
T d1xwdc1          52 FGDLEKIEISQN   63 (242)
T ss_dssp             CTTCCEEEEESC
T ss_pred             cchhhhhhhccc
Confidence            445555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.95  E-value=0.04  Score=45.51  Aligned_cols=57  Identities=18%  Similarity=0.092  Sum_probs=41.7

Q ss_pred             hcCCCCceEEeecc-CCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHcCCCCcEEeccCCcCCC
Q 037159          172 ANCKNFSMLKVMFS-FDLDFAMSLFMSIPELKVLSLRSSIVDKNALNLILTLMGSLEALNISHCLLGQ  238 (307)
Q Consensus       172 ~~c~~L~~L~l~~~-~~~~~~~~l~~~~p~L~~L~L~~~~it~~~l~~l~~~~~~L~~L~l~~C~~i~  238 (307)
                      ..+++|++|+++++ +.     .+...+++|+.|+|++|.++.  +   -..+++|++|++++|..-+
T Consensus       281 ~~~~~L~~L~Ls~N~l~-----~lp~~~~~L~~L~L~~N~L~~--l---~~~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAE--V---PELPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCCTTCCEEECCSSCCS-----CCCCCCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCEEECCCCccC-----ccccccCCCCEEECCCCcCCc--c---ccccCCCCEEECcCCcCCC
Confidence            34689999999876 22     122357899999999998774  2   2346789999999997433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.0068  Score=48.10  Aligned_cols=86  Identities=13%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             CCccEEecCCCCCCCHHHHH-HHHhcCCCCCeEEecCCCCCHHHHHHHHhcCCCCceEEeecc--CCHHHHHHHHhcCCC
Q 037159          124 PMVKHLALPPCNEITVDGFR-SAIQWWKGLESLTVPFISNASSIIQVIGANCKNFSMLKVMFS--FDLDFAMSLFMSIPE  200 (307)
Q Consensus       124 ~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c~~L~~L~l~~~--~~~~~~~~l~~~~p~  200 (307)
                      +++++|+|++.. ++.  +. ..+.++++|++|+++++.+....-......++++++|.+..+  ...... .....+++
T Consensus        29 ~~l~~L~Ls~n~-i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESCC-CCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSEECCTT
T ss_pred             CCCCEEECcCCc-CCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-cccccccc
Confidence            589999998764 431  11 134678999999999886532111111245688888887543  111111 11247899


Q ss_pred             CCEEEecCCCCCH
Q 037159          201 LKVLSLRSSIVDK  213 (307)
Q Consensus       201 L~~L~L~~~~it~  213 (307)
                      |++|.+.++.++.
T Consensus       105 L~~l~l~~~~l~~  117 (242)
T d1xwdc1         105 LQYLLISNTGIKH  117 (242)
T ss_dssp             CCEEEEESCCCCS
T ss_pred             ccccccchhhhcc
Confidence            9999999988654