Citrus Sinensis ID: 037164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHccHHHHHHHHHHcccHcccccEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtdklyipsrLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEeksingdqftlgirpsayaaasdihGMDKIinmtesnpqmvLDFNLLAVLLYMAMTMLKKSEGLiatkrnssnafeLKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNwtsknlpydfglpsslidaHCKNGLLEKAQSLINHAETKKG
Flexible Loop (DISEMBL)
MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRnwtsknlpyDFGLPSSLIDAHCKNGLLEKAQSlinhaetkkg
Low Complexity Region (SEG)
MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG
Disordered region (IsUnstruct)
****LYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLE**************
Disordered Region (DISOPRED)
*TDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK*
Disordered Region (DISEMBL)
MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG
Disordered Region (DISPRO)
*TDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9SKU6	490	Pentatricopeptide repeat-	no	no	0.94	0.479	0.313	2e-32
Q9C7F1	566	Putative pentatricopeptid	no	no	0.96	0.424	0.302	6e-23
Q8LPS6	524	Pentatricopeptide repeat-	no	no	0.94	0.448	0.25	2e-17
Q93WC5	502	Pentatricopeptide repeat-	no	no	0.94	0.468	0.25	1e-16
O22714	491	Pentatricopeptide repeat-	no	no	0.94	0.478	0.233	6e-16
Q84JR3	492	Pentatricopeptide repeat-	no	no	0.928	0.471	0.249	6e-15
Q9FZ24	537	Pentatricopeptide repeat-	no	no	0.94	0.437	0.226	2e-11
Q9C977	596	Pentatricopeptide repeat-	no	no	0.956	0.401	0.268	3e-10
Q9LRP6	610	Pentatricopeptide repeat-	no	no	0.568	0.232	0.277	2e-07
Q3E911	491	Pentatricopeptide repeat-	no	no	0.924	0.470	0.216	5e-06

>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 147/268 (54%), Gaps = 33/268 (12%)

Query: 7   IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
           +  RL+LI +V G+ +AE +F+ I    R    +G           + KAE V QEMK++
Sbjct: 109 VAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKEL 168

Query: 56  GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
           GF +  +   +M+ L   TG    ++ L+ EME++++  D FT+  R  AY+  SD+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228

Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFEL 165
           +K +   E++  + LD+          + A L   A+ ML+KSE ++ A KR   +A+E+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK--HAYEV 286

Query: 166 ----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL 215
                     K+++YR+W  Y +    +N GY++++  LLK+DD++  EK +  W + + 
Sbjct: 287 LMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHS 346

Query: 216 PYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
            +D  +P  LI  +CK G++EKA+ ++N
Sbjct: 347 LFDIRIPHLLITGYCKKGMMEKAEEVVN 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 31/271 (11%)

Query: 9   SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMG 56
           +RL+LI  V G+E+AE +F++I K  R    +             + KAE   Q+M+D+G
Sbjct: 109 ARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLG 168

Query: 57  FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
              R +    MM L     NREK++ L+LEM++  +  D  T+      Y+A  D+  M+
Sbjct: 169 LLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEME 228

Query: 117 KIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL-- 165
           K +N  E    + L+++         L A     AM ML+ +E L+  K   S    L  
Sbjct: 229 KFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMK 288

Query: 166 -------KDQLYRIWKHY-GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
                  ++++ R+WK Y  +  +  N GY T++  LLK+DD+ GAE+  + W S  L +
Sbjct: 289 LYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEF 348

Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
           D  +P+ L   +   G+ EKA+ L+N    K
Sbjct: 349 DHRIPTMLASGYRDRGMTEKAEKLMNSKTIK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 29/264 (10%)

Query: 10  RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
           +L+LI +V G+  AE +F  + +  +    +G             KAE ++  M+D G+A
Sbjct: 142 QLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYA 201

Query: 59  RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
              +   +MM L       +K+DA++ EM++K I  D ++  I  S+  +   +  M+ +
Sbjct: 202 LHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELV 261

Query: 119 INMTESNPQMVLDFNLLAVLLYMAMTM---------LKKSEGLIATKRNSSNAFEL---- 165
               +S+  +  ++   + +  M + M         L+K E  I  +      + L    
Sbjct: 262 YQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYG 321

Query: 166 ----KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
               K +LYR+W  Y      + N GY  ++  L+++ D++GAEK    W      YD  
Sbjct: 322 SLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPR 381

Query: 221 LPSSLIDAHCKNGLLEKAQSLINH 244
           +P+ L++A+ KN  LE A+ L +H
Sbjct: 382 IPNLLMNAYVKNDQLETAEGLFDH 405

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 37/272 (13%)

Query: 10  RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGV-----------GKAEMVVQEMKDMGFA 58
           RLNLI +  G+E AE YF+++   ++    +G             KA+   + M D+   
Sbjct: 113 RLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHV 172

Query: 59  RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
             ++    +M +    G  EK+ AL++ M+EKSI     T  +   +  +  D+ G++K+
Sbjct: 173 SNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKV 232

Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD--------- 167
           ++  ++  + +  +N  A L  +Y+ + +  K+E  + +  N+ N  +++D         
Sbjct: 233 LDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP-DVRDCYHFLINLY 291

Query: 168 -------QLYRIW----KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
                  ++YR+W    K Y     V N  Y+TM+  L KLDD+ G +K    W S    
Sbjct: 292 TGIANASEVYRVWDLLKKRYPN---VNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWT 348

Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK 248
           YD  + +  I ++ K  + E+A+++ N A  K
Sbjct: 349 YDMRMANVAISSYLKQNMYEEAEAVFNGAMKK 380

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 39/274 (14%)

Query: 11  LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
           L+L+ +   +   E YF ++ +  +  L +G             KAE ++ +MK++    
Sbjct: 97  LDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITP 156

Query: 60  RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
            ++    +M L   TG  EK+ A++ E++ +++  D +T  +   A AA +DI G++++I
Sbjct: 157 SSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVI 216

Query: 120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKD------------ 167
                + ++  D+       Y  M  +    GL      +    E+K+            
Sbjct: 217 EEMNRDGRVAPDWTT-----YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLI 271

Query: 168 ----------QLYRIWKHYG-QTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
                     ++YRIW+       K  N  Y+ M+ +L+KL+D+ GAE   + W +    
Sbjct: 272 TLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCST 331

Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
           YD  + + LI A+ + GL++KA  L   A  + G
Sbjct: 332 YDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGG 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 125/261 (47%), Gaps = 29/261 (11%)

Query: 11  LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
           L+LI  V+G   AE YF+N+ +  +    +G           V K+ +  ++MK+MGF  
Sbjct: 100 LDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVT 159

Query: 60  RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
            ++    +M L    G  EK+  ++ EM+E+++  D ++  I  +A+ A  D+  +   +
Sbjct: 160 SSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTL 219

Query: 120 NMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNSSNAFEL----- 165
              E    + +D+N  AV    Y+       A+ +LK SE  +  K        +     
Sbjct: 220 RDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYAR 279

Query: 166 ---KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL 221
              K ++ R+W       ++  N+ Y+T++  L+K+D +  AE+ L  W S    YDF +
Sbjct: 280 LGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRV 339

Query: 222 PSSLIDAHCKNGLLEKAQSLI 242
           P+++I  +    + EKA++++
Sbjct: 340 PNTVIRGYIGKSMEEKAEAML 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 30/265 (11%)

Query: 11  LNLIFEVHGVEQAEIYFDNISKLLRQ------------CLFFGVGKAEMVVQEMKDMGFA 58
           L+LI +  G+E AE YF+N+    +             C+     KA+   + M ++ F 
Sbjct: 145 LDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFV 204

Query: 59  RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
             ++    MM +       EK+  L+  M+++ I+    T  I   +  + +D+ G++KI
Sbjct: 205 NNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKI 264

Query: 119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIAT---KRNSSN------------ 161
           I+    + +    +N  + L  +Y    + +K++  + +   K N +N            
Sbjct: 265 IDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYA 324

Query: 162 AFELKDQLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG 220
                 ++YR+W+   + R +V N  Y+ M+  + KL D+ G +K    W SK   YD  
Sbjct: 325 GISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMR 384

Query: 221 LPSSLIDAHCKNGLLEKAQSLINHA 245
           L +  I+ + K  + E+A+ +++ A
Sbjct: 385 LANIAINTYLKGNMYEEAEKILDGA 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 33/272 (12%)

Query: 1   MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVV 49
           MT++ Y  SRL+L  ++ G+E+ E     I K          LL  C+  G V K+E+V 
Sbjct: 194 MTERDY-ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVF 252

Query: 50  QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
            +MKD+GF      C  M++L+    +R+KI  ++L ME+++I     T  I      A 
Sbjct: 253 NKMKDLGFPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKILIDVKGAT 311

Query: 110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG--LIATKRN 158
           +DI GM++I+  T  +  + LDF   A+         L   A  +LK+ EG  L A +R 
Sbjct: 312 NDISGMEQILE-TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRA 370

Query: 159 SSNAFEL------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
             +   +      +D++ RIWK   +++  F +    +     KL+ V+ AE        
Sbjct: 371 FKDLLSIYASLGREDEVKRIWK-ICESKPYFEESLAAIQA-FGKLNKVQEAEAIFEKIVK 428

Query: 213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH 244
            +        S L+  +  + +L K + L+  
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKR 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 20/162 (12%)

Query: 9   SRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLF-FGVGKAEMVVQEMKDMGF 57
           S+L+L+ +VH +++AEI+  +I +          LL  C+    V KAE +  +MK++ F
Sbjct: 214 SQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKF 273

Query: 58  ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK 117
                 C  +++L Y   +R+KI  ++L ME ++I   + T     ++   A DI GM+K
Sbjct: 274 PTSVFACNQLLLL-YSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEK 332

Query: 118 IINM-----TESNPQM---VLDFNLLAVLLYMAMTMLKKSEG 151
           I+        E +P++   +  + + A L   A  ++K+ EG
Sbjct: 333 IVETIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEG 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 41/272 (15%)

Query: 7   IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGK------------------AEMV 48
           I  RL+LI + HG++Q E YF+   KLL   +   V K                  AE +
Sbjct: 109 IALRLDLIIKTHGLKQGEEYFE---KLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEAL 165

Query: 49  VQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA 108
           ++++  +GF         MM L   +G  EK+  ++  M+   I  +  +  +  +A   
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225

Query: 109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATKRNS 159
            S +  ++ +      +  + + ++ L  L  +Y+       A  +L+ +E ++  + N 
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKML-NRSNR 284

Query: 160 SNAFEL---------KDQLYRIWK-HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN 209
              F L         K+ + R+W+       ++    Y+ ++  L+K  D++ AE+    
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344

Query: 210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL 241
           W ++   YD  + + L+ A+ +NG + KA+SL
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESL 376

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
359497206	494	PREDICTED: pentatricopeptide repeat-cont	0.996	0.504	0.435	3e-53
449523946	461	PREDICTED: pentatricopeptide repeat-cont	0.968	0.524	0.410	1e-49
225446335	499	PREDICTED: pentatricopeptide repeat-cont	0.936	0.468	0.417	1e-42
147775992	499	hypothetical protein VITISV_024964 [Viti	0.936	0.468	0.417	2e-42
224138182	516	predicted protein [Populus trichocarpa]	0.96	0.465	0.392	1e-40
224138178	505	predicted protein [Populus trichocarpa]	1.0	0.495	0.362	2e-38
255553771	504	pentatricopeptide repeat-containing prot	0.936	0.464	0.364	1e-37
449438086	486	PREDICTED: pentatricopeptide repeat-cont	0.952	0.489	0.340	2e-36
449479000	493	PREDICTED: pentatricopeptide repeat-cont	0.948	0.480	0.349	6e-36
297803972	480	hypothetical protein ARALYDRAFT_354609 [	0.988	0.514	0.344	5e-35

>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Vitis vinifera]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/287 (43%), Positives = 171/287 (59%), Gaps = 38/287 (13%)

Query: 1   MTDKLYIPS-------RLNLIFEVHGVEQAEIYFDNISKLLRQCLFF-----------GV 42
           M+DK YIP        R+NLI +VHG+EQ E YF+NI K L+    +            V
Sbjct: 106 MSDKRYIPLMPRDIALRMNLILKVHGLEQVENYFNNIHKNLKTYQVYIALLNCYALEKSV 165

Query: 43  GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
            KAE ++Q ++D+GF R  +    +M + Y  GN EK+D LM EMEEK I  D+FTL IR
Sbjct: 166 DKAEAIMQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEEKGIFCDKFTLAIR 225

Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
            SAYAAAS+I G+D I+   ES+P+++LD+N  AV         L+   + M+KK E LI
Sbjct: 226 LSAYAAASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEELI 285

Query: 154 ATKRNSSNAFE----------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
             K  S+ AF+           +D+L R+W  Y +  K++NKGYM M+  LLK DD+  A
Sbjct: 286 DAK-GSNVAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAA 344

Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
           EK L  W S+ L YDF +P+ LIDA+C+ GL EKA++L+N   TK G
Sbjct: 345 EKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGG 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 170/280 (60%), Gaps = 38/280 (13%)

Query: 1   MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNI-SKLLRQCLFFG----------V 42
           M+DK Y P        R+NLI  VHG+EQ E YFDN+ S+L R  +             V
Sbjct: 87  MSDKRYFPLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCV 146

Query: 43  GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
            KA   +Q++K+MGFA   +   IMM L +  G  E++D+L+ EM+E+ +  D+FT  IR
Sbjct: 147 DKANAFMQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIR 206

Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
            SAYAAASD  G++KI+   ESNP +VLD+N   +         L+  +++MLKKSEGL+
Sbjct: 207 ISAYAAASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLL 266

Query: 154 ATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA 203
           A  +    AF +          KD+++RIW  Y +  K+FNKG+++M+  LL LDD+KGA
Sbjct: 267 ANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLY-KKEKIFNKGFISMITSLLILDDIKGA 325

Query: 204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
           E+  + W ++ L YD  +P+ L+DA+C+ GL+EKA+ L+N
Sbjct: 326 ERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLN 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Vitis vinifera]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 152/266 (57%), Gaps = 32/266 (12%)

Query: 10  RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
           +L+LI +VHG+EQAE YF+     LR    +G           + KAE ++QEM+DMGF 
Sbjct: 109 QLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV 168

Query: 59  RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
           + T+   +M+ L    G  EK+D LM EMEE  I  D FT  IR +AY A SD+ GM+K+
Sbjct: 169 K-TLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKL 227

Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
           +   E++P +  D+N         L A L   A+ MLKKSE  I + R+    +E+    
Sbjct: 228 LMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFI-SGRSRRFGYEILLTL 286

Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
                 K ++YRIW  Y    K FN GY+ M+  LLKLDD+ GAEKT   W S N  +DF
Sbjct: 287 YATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDF 346

Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA 245
            +P+ LI A+CK GLLEKA+ L++ A
Sbjct: 347 RVPNLLIRAYCKKGLLEKAEQLVSRA 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 151/266 (56%), Gaps = 32/266 (12%)

Query: 10  RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
           +L+LI +VHG+EQAE YF+     LR    +G           + KAE ++QEM+DMGF 
Sbjct: 109 QLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFV 168

Query: 59  RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
           + T+   +M+ L    G  EK+D LM EMEE  I  D FT  IR +AY A SD+ GM+K+
Sbjct: 169 K-TLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKL 227

Query: 119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIATKRNSSNAFEL---- 165
           +   E++P +  D+N         L A L   A+ MLKKSE  I + R+    +E+    
Sbjct: 228 LMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFI-SGRSRRFGYEILLTL 286

Query: 166 ------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF 219
                 K + YRIW  Y    K FN GY+ M+  LLKLDD+ GAEKT   W S N  +DF
Sbjct: 287 YATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWLSGNKFFDF 346

Query: 220 GLPSSLIDAHCKNGLLEKAQSLINHA 245
            +P+ LI A+CK GLLEKA+ L++ A
Sbjct: 347 RVPNLLIRAYCKKGLLEKAEQLVSRA 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa] gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 158/278 (56%), Gaps = 38/278 (13%)

Query: 1   MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
           MTDK Y       +  RL+LI +VHG+EQ E YF+NI   L+    +G           V
Sbjct: 104 MTDKRYLALTSRAVAVRLDLISKVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSV 163

Query: 43  GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
            KAE V+Q M+++GFAR+ +   +M+ L Y TGN EK+D LM EMEE  I+ D+F   IR
Sbjct: 164 EKAEAVMQRMRELGFARKPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIR 223

Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
            S+YAAASD  G++K +   ES+P +VLD+   A          LL  A+ MLK+ E LI
Sbjct: 224 LSSYAAASDSEGLEKTLKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLI 283

Query: 154 ATKRNSSNAFEL---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
             +R S+    L         K+ + R+W+ +   R V N+  ++++  LLK DD++ AE
Sbjct: 284 TGERRSTPYDYLMTQYATTGTKEDVLRVWELH--KRYVGNRKNISVITSLLKFDDLESAE 341

Query: 205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI 242
           K    W S+ L  D  +P+ L+DA+ + GLLEKA+ L+
Sbjct: 342 KIFEEWESQKLCDDIIIPNFLVDAYSRKGLLEKAEMLL 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa] gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 159/287 (55%), Gaps = 37/287 (12%)

Query: 1   MTDKLY-------IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
           MTD  Y       +  +L+LI +VHG+EQA+  F+N  + L+    +            V
Sbjct: 117 MTDSGYFELASQDVAVQLDLISKVHGIEQAQKLFNNTPQHLKVLKVYSALLNCYAKAKLV 176

Query: 43  GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIR 102
            KAE VVQEMK +GFA   +   +++   Y TGN +KI++LM EME+  I  D+F   I+
Sbjct: 177 EKAESVVQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQ 236

Query: 103 PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLI 153
            SAYA+ SDI G++K +   ES+P + LD+              L+  A+ ML+KSE L+
Sbjct: 237 LSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLV 296

Query: 154 ATKRNSSNAFEL---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE 204
             KR  +    L          +++ RIW+ Y +  KV+ + Y++++  LLKLDD + AE
Sbjct: 297 TGKRRGTAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAE 356

Query: 205 KTLRNWTSKNLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG 250
           K    W  +N   YD  +P+ LIDA+ + GL+EKA++LI+ A +K G
Sbjct: 357 KIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAISKGG 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/269 (36%), Positives = 153/269 (56%), Gaps = 35/269 (13%)

Query: 7   IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
           +  RL+LI +VHG+ +AE YF++I    R    +G           +GKAE  +Q+MKD+
Sbjct: 110 VAVRLDLISKVHGLVKAEEYFNSIPDTSRDRQVYGALLNCCAHSKLLGKAEATMQKMKDL 169

Query: 56  GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
           GF + ++   +M+ L    GN EK+D L+ EMEE  I+ D+ T  IR +A   +SDI GM
Sbjct: 170 GFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVNSSDIEGM 229

Query: 116 DKIINMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLIA--TKRNSSNAFE 164
           +K++   E +P + + F+         L A L+   + MLK+SE LI+  T+R    A+E
Sbjct: 230 EKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRRF---AYE 286

Query: 165 L----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN 214
                      K ++YRIW  Y +  + FN GY+ M+  LLKLDD+ GAE+    W SK 
Sbjct: 287 FLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEWDSKK 346

Query: 215 LPYDFGLPSSLIDAHCKNGLLEKAQSLIN 243
           + +D  +P+S+++ + + G LEKA++ IN
Sbjct: 347 VLFDIRIPNSMVNVYSRKGHLEKAETYIN 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 154/267 (57%), Gaps = 29/267 (10%)

Query: 6   YIPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKD 54
           +I  +L+LI +  G+EQAE YF +I +  R    +G           + KAE ++Q+M++
Sbjct: 106 HIAIQLHLISKARGLEQAEEYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMRE 165

Query: 55  MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
           +GF +  +    M+ L    G  EK+D L+ EMEE  I  ++FT  +R +AYAAASDI  
Sbjct: 166 VGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAAASDITN 225

Query: 115 MDKIINMTESNPQMVLDFNLL---------AVLLYMAMTMLKKSEGLIATKRNS------ 159
           M+K+++  E++P +  D+++          A L   +++MLKK+E LI  K+        
Sbjct: 226 MEKLLSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQLIGDKQKWLAYQYL 285

Query: 160 ---SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP 216
                A   KD++YR+W  Y   +K FN GY+ ++  L+KLDD+ GAE+ L+ W S +  
Sbjct: 286 MTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTS 345

Query: 217 YDFGLPSSLIDAHCKNGLLEKAQSLIN 243
           +DF +P+ +I+++C  G ++KA++ I+
Sbjct: 346 FDFKIPNMMINSYCTKGFVDKAEAYIS 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 148/266 (55%), Gaps = 29/266 (10%)

Query: 7   IPSRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDM 55
           I   L+LI +  G+EQAE YF +I +  R    +G           + KAE ++Q+M+++
Sbjct: 107 IAVELHLISKARGLEQAEKYFSSIGESSRDHKVYGALLHCYVENKNLKKAEAIMQKMREV 166

Query: 56  GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM 115
           GF +  +    M+ L    G  EK+  L+ EMEE  I  D+FT  IR +AYAAASDI  M
Sbjct: 167 GFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAAASDITNM 226

Query: 116 DKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGLIATKRNS------- 159
           +K+++  E++P +  D++   V         L   ++ MLKK+E  I  K+         
Sbjct: 227 EKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKWLAYQYLM 286

Query: 160 --SNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY 217
               A   KD++YR+W  Y   RK FN GY+ ++  L+KLDD+ GAE+ L+ W S +  +
Sbjct: 287 TLYAAIGNKDEVYRVWNLYTNLRKRFNSGYLCIISSLMKLDDIDGAERILKEWESGDTSF 346

Query: 218 DFGLPSSLIDAHCKNGLLEKAQSLIN 243
           DF +P+ +I+++C  G ++KA++ IN
Sbjct: 347 DFRIPNMMINSYCMKGFVDKAEAYIN 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803972|ref|XP_002869870.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp. lyrata] gi|297315706|gb|EFH46129.1| hypothetical protein ARALYDRAFT_354609 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 151/287 (52%), Gaps = 40/287 (13%)

Query: 1   MTDKLYIP-------SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V 42
           M+D+++ P       +R+NLI  V G+ +AE++F+NI K ++    F             
Sbjct: 94  MSDRMFFPLSLTDFGTRINLISRVCGLGEAEVFFENIPKDMKGIAVFSSLLSCYAREKSA 153

Query: 43  GKAEMVVQEMKDMGFARRTIYCY-IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGI 101
            KA  +V+ MK+ G +  T  CY +MM + Y      K+D LMLEME+  ++ DQFTL I
Sbjct: 154 EKAAKLVEAMKEAGVSMDT-RCYNLMMNMYYQMNVHGKLDDLMLEMEQNGVSFDQFTLSI 212

Query: 102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEGL 152
           R SAYAAAS+I G++K I    S  +  +D+ + +          L+  A  MLKK E  
Sbjct: 213 RLSAYAAASNIEGIEKTIEKISSMSETAIDWTIYSAAANAFLKVELIDEATMMLKKCEEF 272

Query: 153 IATKRNSSNAFEL----------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKG 202
           +  + + + AF            K+ L R+W  + + RKVFN GY  M+   LK  D++ 
Sbjct: 273 V-NEDSGNEAFHTLLKLYGETGRKEDLSRVWLRFKEERKVFNSGYKIMISSALKFGDIEL 331

Query: 203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249
            EK    W S+ L YDF +P+ LI+ +C+  L EKA+ L+  AE  +
Sbjct: 332 VEKVFNQWESEKLSYDFRIPNLLINFYCEKDLTEKAELLLKKAEGNR 378

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2074668	541	AT3G11380 "AT3G11380" [Arabido	0.884	0.408	0.3	6.5e-20
TAIR|locus:2141360	502	AT4G01990 [Arabidopsis thalian	0.628	0.312	0.239	3.2e-15
TAIR|locus:2204793	524	AT1G02150 [Arabidopsis thalian	0.316	0.150	0.35	5.4e-15
TAIR|locus:2051379	490	AT2G20710 [Arabidopsis thalian	0.636	0.324	0.318	1.4e-14
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.332	0.169	0.333	2e-14
TAIR|locus:504955535	492	AT4G21705 "AT4G21705" [Arabido	0.58	0.294	0.263	2e-12
TAIR|locus:2034215	596	PPR596 "AT1G80270" [Arabidopsi	0.968	0.406	0.271	1e-10
TAIR|locus:2204808	537	AT1G02370 "AT1G02370" [Arabido	0.332	0.154	0.317	1.5e-10
TAIR|locus:2010459	566	AT1G28020 "AT1G28020" [Arabido	0.72	0.318	0.289	2.8e-09
TAIR|locus:2080702	359	AT3G11350 "AT3G11350" [Arabido	0.436	0.303	0.321	7.3e-09

TAIR|locus:2074668 AT3G11380 "AT3G11380" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 75/250 (30%), Positives = 126/250 (50%)

Query:     9 SRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFGV--------G-----KAEMVVQEMKD 54
             +R +L  +V  +E+AE +F++I + +R + ++  +        G     KAE V ++MK 
Sbjct:   115 ARFHLTEKVLNLEEAEKFFESIPENMRFESMYNSLLRSYARQSGEKALKKAESVFKKMKK 174

Query:    55 MGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG 114
             +G   R      M  L    GNR+K+D ++ EM+E ++  D  T+      YAA SD+  
Sbjct:   175 LGLLLRPSPYNSMTSLYSSLGNRDKVDEILREMKENNVELDNVTVNNALRVYAAVSDVAT 234

Query:   115 MDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWK 174
             MDK +           D   +  L  + M  + K+  L++       A E++D ++R+W 
Sbjct:   235 MDKFL----------ADRKEITRLDGLTMLAMAKAYELMSLY---GEAGEIED-VHRVWD 280

Query:   175 HYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN-WTSKNLPYDFGLPSSLIDAHCKNG 233
              Y  TR+  N+ + T++G LLKL D KGAEK   N W    L +D  +P  L+  + + G
Sbjct:   281 KYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEWECSGLEFDNRIPDMLVSGYREKG 340

Query:   234 LLEKAQSLIN 243
             ++ KA  L+N
Sbjct:   341 MVMKADKLVN 350

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 41/171 (23%), Positives = 85/171 (49%)

Query:    10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-------VGKAEMVV----QEMKDMGFA 58
             RLNLI +  G+E AE YF+++   ++    +G       V K E+      + M D+   
Sbjct:   113 RLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHV 172

Query:    59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
               ++    +M +    G  EK+ AL++ M+EKSI     T  +   +  +  D+ G++K+
Sbjct:   173 SNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKV 232

Query:   119 INMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKD 167
             ++  ++  + +  +N  A L  +Y+ + +  K+E  + +  N+ N  +++D
Sbjct:   233 LDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP-DVRD 282

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query:   166 KDQLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS 224
             K +LYR+W  Y      + N GY  ++  L+++ D++GAEK    W      YD  +P+ 
Sbjct:   326 KKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNL 385

Query:   225 LIDAHCKNGLLEKAQSLINH 244
             L++A+ KN  LE A+ L +H
Sbjct:   386 LMNAYVKNDQLETAEGLFDH 405

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 58/182 (31%), Positives = 96/182 (52%)

Query:    10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFA 58
             RL+LI +V G+ +AE +F+ I    R    +G           + KAE V QEMK++GF 
Sbjct:   112 RLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFL 171

Query:    59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
             +  +   +M+ L   TG    ++ L+ EME++++  D FT+  R  AY+  SD+ GM+K 
Sbjct:   172 KGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKF 231

Query:   119 INMTESNPQMVLDFN---------LLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFELKDQ 168
             +   E++  + LD+          + A L   A+ ML+KSE ++ A KR   +A+E+   
Sbjct:   232 LMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK--HAYEVLMS 289

Query:   169 LY 170
              Y
Sbjct:   290 FY 291

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query:   168 QLYRIWKHYGQT-RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI 226
             ++YRIW+       K  N  Y+ M+ +L+KL+D+ GAE   + W +    YD  + + LI
Sbjct:   282 EVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLI 341

Query:   227 DAHCKNGLLEKAQSLINHAETKKG 250
              A+ + GL++KA  L   A  + G
Sbjct:   342 GAYAQEGLIQKANELKEKAPRRGG 365

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 44/167 (26%), Positives = 81/167 (48%)

Query:    11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFAR 59
             L+LI  V+G   AE YF+N+ +  +    +G           V K+ +  ++MK+MGF  
Sbjct:   100 LDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVT 159

Query:    60 RTI-YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI 118
              ++ Y  IM +   + G  EK+  ++ EM+E+++  D ++  I  +A+ A  D+  +   
Sbjct:   160 SSLTYNNIMCLYTNI-GQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGT 218

Query:   119 INMTESNPQMVLDFNLLAVL--LYM-------AMTMLKKSEGLIATK 156
             +   E    + +D+N  AV    Y+       A+ +LK SE  +  K
Sbjct:   219 LRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKK 265

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034215 PPR596 "AT1G80270" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 75/276 (27%), Positives = 127/276 (46%)

Query:     1 MTDKLYIPSRLNLIFEVHGVEQAEIYFDNISK----------LLRQCLFFG-VGKAEMVV 49
             MT++ Y  SRL+L  ++ G+E+ E     I K          LL  C+  G V K+E+V 
Sbjct:   194 MTERDYA-SRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVF 252

Query:    50 QEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA 109
              +MKD+GF      C  M++L+    +R+KI  ++L ME+++I     T  I      A 
Sbjct:   253 NKMKDLGFPLSGFTCDQMLLLHKRI-DRKKIADVLLLMEKENIKPSLLTYKILIDVKGAT 311

Query:   110 SDIHGMDKIINMTESNPQMVLDFNLLAV---------LLYMAMTMLKKSEG--LIATKRN 158
             +DI GM++I+  T  +  + LDF   A+         L   A  +LK+ EG  L A +R 
Sbjct:   312 NDISGMEQILE-TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRA 370

Query:   159 SSNAFEL------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS 212
               +   +      +D++ RIWK   +++  F +    +     KL+ V+ AE        
Sbjct:   371 FKDLLSIYASLGREDEVKRIWK-ICESKPYFEESLAAIQAFG-KLNKVQEAEAIFEKIVK 428

Query:   213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH-AET 247
              +        S L+  +  + +L K + L+   AE+
Sbjct:   429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAES 464

GO:0003677 "DNA binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 27/85 (31%), Positives = 47/85 (55%)

Query:   168 QLYRIWKHYGQTR-KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI 226
             ++YR+W+   + R +V N  Y+ M+  + KL D+ G +K    W SK   YD  L +  I
Sbjct:   331 EVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAI 390

Query:   227 DAHCKNGLLEKAQSLINHAETK-KG 250
             + + K  + E+A+ +++ A  K KG
Sbjct:   391 NTYLKGNMYEEAEKILDGAMKKSKG 415

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 60/207 (28%), Positives = 100/207 (48%)

Query:     9 SRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFGV-----------GKAEMVVQEMKDMG 56
             +RL+LI  V G+E+AE +F++I K  R   ++  +            KAE   Q+M+D+G
Sbjct:   109 ARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLG 168

Query:    57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMD 116
                R +    MM L     NREK++ L+LEM++  +  D  T+      Y+A  D+  M+
Sbjct:   169 LLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEME 228

Query:   117 KIINMTESNPQMVLDFN--LLAVLLYM-------AMTMLKKSEGLIATKRNSSNAFELKD 167
             K +N  E    + L+++  L     Y+       AM ML+ +E L+  K   S A+   D
Sbjct:   229 KFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKS-AY---D 284

Query:   168 QLYRIWKHYGQTRKVFN--KGYMTMMG 192
              L +++   G   +V    K Y + +G
Sbjct:   285 HLMKLYGEAGNREEVLRVWKLYKSKIG 311

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080702 AT3G11350 "AT3G11350" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
 Identities = 36/112 (32%), Positives = 62/112 (55%)

Query:     9 SRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFGVGKAEMVVQEMKDMGFARRTIYCYIM 67
             +R  LI  V G+E+AE YF++I + LR + L+  + ++     E K +  A R       
Sbjct:    81 ARFQLIENVLGLEEAEKYFESIPENLRGESLYTALLRSYAKRSEKKYLDRASRIHIQEDE 140

Query:    68 MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII 119
              I ++  G R+K+D  + EM+E +I+ D+ T+      YAAASD+  M++ +
Sbjct:   141 RISSF--GTRDKVDESLREMKESNIDLDRLTVNKALRVYAAASDVAAMERFL 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018568001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (499 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PF13041	50	PPR_2: PPR repeat family	99.7
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.64
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.62
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.6
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.6
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.59
PF13041	50	PPR_2: PPR repeat family	99.57
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.55
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.31
PF12854	34	PPR_1: PPR repeat	99.23
PF12854	34	PPR_1: PPR repeat	99.23
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.17
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.12
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.08
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.07
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.02
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.01
KOG1126	638	consensus DNA-binding cell division cycle control	98.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.91
PRK14574	822	hmsH outer membrane protein; Provisional	98.91
KOG1126	638	consensus DNA-binding cell division cycle control	98.89
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.87
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.78
PRK12370	553	invasion protein regulator; Provisional	98.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.77
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.73
PRK14574	822	hmsH outer membrane protein; Provisional	98.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.72
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.62
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.56
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.55
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.53
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.51
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.5
KOG2003	840	consensus TPR repeat-containing protein [General f	98.5
PRK12370	553	invasion protein regulator; Provisional	98.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.43
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.42
KOG1129	478	consensus TPR repeat-containing protein [General f	98.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.37
PRK11189	296	lipoprotein NlpI; Provisional	98.37
KOG2003	840	consensus TPR repeat-containing protein [General f	98.32
PRK11189	296	lipoprotein NlpI; Provisional	98.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.23
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.23
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.22
KOG2076	895	consensus RNA polymerase III transcription factor	98.18
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.16
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.13
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.1
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.08
KOG1129	478	consensus TPR repeat-containing protein [General f	98.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.0
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.97
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.97
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.95
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.91
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.89
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.87
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.81
PRK15359	144	type III secretion system chaperone protein SscB;	97.75
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.75
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.72
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.71
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.67
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.65
KOG2076	895	consensus RNA polymerase III transcription factor	97.61
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.56
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.55
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.51
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.45
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.41
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.38
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.38
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.33
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.32
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.29
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.26
KOG3941	406	consensus Intermediate in Toll signal transduction	97.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.13
PRK15359	144	type III secretion system chaperone protein SscB;	97.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.09
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.98
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.9
KOG1125	579	consensus TPR repeat-containing protein [General f	96.88
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.81
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.8
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.73
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.73
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.7
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.68
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.67
PLN02789	320	farnesyltranstransferase	96.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.65
PRK04841	903	transcriptional regulator MalT; Provisional	96.6
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.58
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.58
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.57
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.36
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.28
PF13371	73	TPR_9: Tetratricopeptide repeat	96.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.02
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.92
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.85
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.77
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.64
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.5
PF13371	73	TPR_9: Tetratricopeptide repeat	95.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.31
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.18
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.05
PRK14720	906	transcript cleavage factor/unknown domain fusion p	94.99
PF12688	120	TPR_5: Tetratrico peptide repeat	94.95
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	94.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.88
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.87
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.78
KOG0553	304	consensus TPR repeat-containing protein [General f	94.67
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.63
KOG1585	308	consensus Protein required for fusion of vesicles	94.58
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.44
PLN02789	320	farnesyltranstransferase	94.41
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.28
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.28
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.21
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.07
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.93
PF12688	120	TPR_5: Tetratrico peptide repeat	93.83
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.8
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	93.71
PRK10803	263	tol-pal system protein YbgF; Provisional	93.54
KOG1125	579	consensus TPR repeat-containing protein [General f	93.49
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.37
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.3
PF13929	292	mRNA_stabil: mRNA stabilisation	93.27
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.22
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.08
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.03
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.97
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.96
KOG0553	304	consensus TPR repeat-containing protein [General f	92.75
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.74
KOG3941	406	consensus Intermediate in Toll signal transduction	92.58
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	92.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.19
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.14
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.13
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.13
PRK15331	165	chaperone protein SicA; Provisional	91.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.57
PRK10803	263	tol-pal system protein YbgF; Provisional	91.56
PF13428	44	TPR_14: Tetratricopeptide repeat	91.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.25
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.18
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.72
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.55
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	90.44
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	89.7
PF13428	44	TPR_14: Tetratricopeptide repeat	89.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.27
KOG4555	175	consensus TPR repeat-containing protein [Function	89.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	89.01
PRK15331	165	chaperone protein SicA; Provisional	88.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.91
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	88.29
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.29
PF13431	34	TPR_17: Tetratricopeptide repeat	88.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.02
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.76
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	87.66
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	87.63
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.54
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	87.03
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.68
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.63
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.17
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	85.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.27
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	85.05
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	84.76
PF13929	292	mRNA_stabil: mRNA stabilisation	84.72
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.57
PF13512	142	TPR_18: Tetratricopeptide repeat	84.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	83.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	83.01
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	82.2
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.21
PRK04841	903	transcriptional regulator MalT; Provisional	80.69

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.6e-42  Score=305.97  Aligned_cols=237  Identities=16%  Similarity=0.168  Sum_probs=147.6

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG   75 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g   75 (250)
                      ++|++|++.|++++|.++|++|.+.  .|+..+|+           +++|.++|++|.+.|+.||..|||.||.+|++.|
T Consensus       477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G  556 (1060)
T PLN03218        477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG  556 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            6667777777777777777777655  45666666           6666666666666666666666666666666666


Q ss_pred             ChhhHHHHHHHHHh--cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHH
Q 037164           76 NREKIDALMLEMEE--KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMT  144 (250)
Q Consensus        76 ~~~~a~~~~~~m~~--~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~  144 (250)
                      ++++|.++|++|..  .|+.||..||++||.+|++.|++++|.++|++|... |+.|+..+|+.+         +++|.+
T Consensus       557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence            66666666666654  456666666666666666666666666666666666 666666666666         566666


Q ss_pred             HHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          145 MLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       145 ~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      +|++|. .+..|+..   +|+       +.+++++++++++.+    ..|+..+|+++|.+|++.|++++|.++|++|..
T Consensus       636 lf~eM~~~Gv~PD~~---TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        636 IYDDMKKKGVKPDEV---FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            666666 44445443   554       344444444443332    125555666666666666666666666666655


Q ss_pred             CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      .|+.||..+||+||.+|++.|++++|.++|++|.+.|
T Consensus       713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            5556666666666666666666666666666655554

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.5e-41  Score=301.68  Aligned_cols=246  Identities=14%  Similarity=0.064  Sum_probs=226.5

Q ss_pred             CCcCCCcc------chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----------hhHHHHHHHHHHH--CCCCc
Q 037164            1 MTDKLYIP------SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----------VGKAEMVVQEMKD--MGFAR   59 (250)
Q Consensus         1 m~~~~~~p------~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----------~~~A~~~~~~m~~--~~~~p   59 (250)
                      |.+.+..|      ++|++|++.|++++|.++|+.|...  .|+..+|+           +++|.++|++|.+  .|+.|
T Consensus       498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P  577 (1060)
T PLN03218        498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP  577 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence            34455556      8999999999999999999999877  68888998           8999999999976  67999


Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-  138 (250)
                      |..+||+||.+|++.|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|... |+.||..||+.+ 
T Consensus       578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI  656 (1060)
T PLN03218        578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALV  656 (1060)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 999999999999 


Q ss_pred             --------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcC
Q 037164          139 --------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLD  198 (250)
Q Consensus       139 --------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g  198 (250)
                              +++|.+++++|. .+..|+..   +|+       +.++++++.++++++    ..|+..+||+||.+|++.|
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~---tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G  733 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTV---SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN  733 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence                    899999999999 56666655   777       777777777777665    3499999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      ++++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+
T Consensus       734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi  785 (1060)
T PLN03218        734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI  785 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999884

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-38  Score=281.89  Aligned_cols=230  Identities=11%  Similarity=0.043  Sum_probs=205.8

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCcc-----------------
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARR-----------------   60 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~-----------------   60 (250)
                      .+|++|+++|++++|.++|++|+.  |+..+|+           .++|.++|++|.+.|+.||                 
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence            888999999999999999999985  6888888           8889999999877766555                 


Q ss_pred             ------------------HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           61 ------------------TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        61 ------------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                                        ..+||+||.+|++.|++++|.++|++|..    +|..+||+||.+|++.|++++|.++|++|
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                              44567788889999999999999998864    58899999999999999999999999999


Q ss_pred             hhCCCCCccHHHHHHH---------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164          123 ESNPQMVLDFNLLAVL---------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       123 ~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      ... |+.||..||+.+         +++|.+++.+|. .+..++..   +|+       +.|.++++.+.++.+..+|..
T Consensus       317 ~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~---~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~  392 (697)
T PLN03081        317 RDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV---ANTALVDLYSKWGRMEDARNVFDRMPRKNLI  392 (697)
T ss_pred             HHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee---ehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence            988 999999999998         889999999999 55555554   555       889999999999999889999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +||+||.+|++.|+.++|.++|++|...|+.||..||++++.+|++.|.+++|.++|+.|.+.
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999864

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3e-37  Score=278.30  Aligned_cols=230  Identities=10%  Similarity=0.062  Sum_probs=204.7

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      ++|++|+++|++++|.++|++|+.  |+..+|+           .++|.++|++|.+.|+.||..||+++|.+|++.|++
T Consensus       328 ~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~  405 (857)
T PLN03077        328 SLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL  405 (857)
T ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence            899999999999999999999975  6788888           899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK  148 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~  148 (250)
                      +.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|..     +|..+|+++         .++|..+|++
T Consensus       406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~  480 (857)
T PLN03077        406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQ  480 (857)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998864     345566666         5677777777


Q ss_pred             HHhhhhccCCchhhhc------------------------------------------chhHHHHHHHHHhccCCCChhh
Q 037164          149 SEGLIATKRNSSNAFE------------------------------------------LKDQLYRIWKHYGQTRKVFNKG  186 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  186 (250)
                      |.....|+..   +|.                                          +.|+++++++.+..+ .+|..+
T Consensus       481 m~~~~~pd~~---t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s  556 (857)
T PLN03077        481 MLLTLKPNSV---TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS  556 (857)
T ss_pred             HHhCCCCCHh---HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence            7655555443   332                                          678889999999888 899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH-hcC
Q 037164          187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE-TKK  249 (250)
Q Consensus       187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g  249 (250)
                      ||++|.+|++.|+.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|+.|. +.|
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g  620 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS  620 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999998 445

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=8.2e-36  Score=263.50  Aligned_cols=234  Identities=8%  Similarity=0.056  Sum_probs=188.2

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      ++|++|+|+|++++|.++|++|+.  ++..+|+           .++|.++|++|.+.|+.||..||+++|.+|++.|++
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~  341 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL  341 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence            788888888888888888888875  4777777           788888888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHhcCCC-------------------------------CCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164           78 EKIDALMLEMEEKSIN-------------------------------GDQFTLGIRPSAYAAASDIHGMDKIINMTESNP  126 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~-------------------------------p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~  126 (250)
                      ++|.+++.+|.+.|+.                               ||..|||+||.+|++.|+.++|.++|++|... 
T Consensus       342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-  420 (697)
T PLN03081        342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-  420 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            8888887777777755                               45556666666666667777777777777777 


Q ss_pred             CCCccHHHHHHH---------HHHHHHHHHHHH--hhhhccCCchhhhc-------chhHHHHHHHHHhccCC-CChhhH
Q 037164          127 QMVLDFNLLAVL---------LYMAMTMLKKSE--GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK-VFNKGY  187 (250)
Q Consensus       127 g~~~~~~~~~~l---------~~~a~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~  187 (250)
                      |+.||..||+.+         +++|.++|+.|.  .+..|+..   +|+       +.|.++++.++++++.. |+..+|
T Consensus       421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~---~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~  497 (697)
T PLN03081        421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM---HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW  497 (697)
T ss_pred             CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc---chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence            888888888888         788888888886  35666655   665       78888888888887755 888889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      ++++.+|++.|+++.|..+++++..  ..| +..+|+.|+..|++.|++++|.++++.|.++|+
T Consensus       498 ~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        498 AALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999888888763  334 578999999999999999999999999999885

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-35  Score=267.90  Aligned_cols=232  Identities=13%  Similarity=0.026  Sum_probs=180.2

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHH-------------
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYC-------------   64 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y-------------   64 (250)
                      ++|++|++.|+++.|.++|++|++  |+..+|+           +++|.++|++|...|+.||..||             
T Consensus       126 ~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        126 AMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             HHHHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence            566666666666666666666664  4556666           56666666666666666655555             


Q ss_pred             ----------------------HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           65 ----------------------YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        65 ----------------------~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                                            |+||.+|++.|+++.|.++|++|.+    ||.++||++|.+|++.|++++|.++|++|
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M  279 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM  279 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence                                  5566666666777777777776653    56777777777777777778888888888


Q ss_pred             hhCCCCCccHHHHHHH---------HHHHHHHHHHHH-hhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164          123 ESNPQMVLDFNLLAVL---------LYMAMTMLKKSE-GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       123 ~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      ... |+.||..||+.+         .+.+.+++..|. .+..|+..   +|+       +.+.++++.++++++..|+..
T Consensus       280 ~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~---~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~  355 (857)
T PLN03077        280 REL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS---VCNSLIQMYLSLGSWGEAEKVFSRMETKDAV  355 (857)
T ss_pred             HHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH---HHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence            777 888888888888         677888888887 55555554   666       888889999999988889999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      +||++|.+|++.|++++|.++|++|...|+.||..||++++.+|++.|+++.|.++++.|.+.|.
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~  420 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL  420 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999899999999999999888888888888888888887763

>PF13041 PPR_2: PPR repeat family

Probab=99.70  E-value=3.3e-17  Score=94.80  Aligned_cols=50  Identities=18%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA  108 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~  108 (250)
                      ||+++||++|.+|++.|++++|.++|++|++.|+.||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999985

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.64  E-value=9e-14  Score=115.53  Aligned_cols=229  Identities=14%  Similarity=-0.007  Sum_probs=147.0

Q ss_pred             hhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChh
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~   78 (250)
                      +...|++++|...|.++....|+. ..+.           .++|..+++.+.+.+..++   ..++..+...|.+.|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            345678888888888877664432 2333           7788888888776532221   246777788888888888


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH----HHHHHH---------HHHHHHH
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF----NLLAVL---------LYMAMTM  145 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~~~~l---------~~~a~~~  145 (250)
                      +|.++|+++.+. -+++..+++.++..+.+.|++++|.++++.+... +-.+..    ..+..+         .++|...
T Consensus       125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            888888887764 2345677888888888888888888888887654 222211    112222         6777777


Q ss_pred             HHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164          146 LKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP  216 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  216 (250)
                      |+++.... |.....     ..|...++.+++.+.++....  |+  ..+++.+..+|.+.|+.++|...++++...  .
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  279 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y  279 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            77776433 222211     011155566666666555432  22  245667777778888888888888777654  3


Q ss_pred             CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          217 YDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       217 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |+...+..+...+.+.|++++|..+++++.+
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5555667777777778888888887777654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.62  E-value=1.4e-13  Score=114.31  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=177.4

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNY   72 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~   72 (250)
                      .+...+.+.|++++|..+++.+....+..     ..+.           .++|..+|+++.+. -+++..+++.++..|.
T Consensus        74 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~  152 (389)
T PRK11788         74 ALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ  152 (389)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence            45567888999999999999887642211     1111           89999999999876 3467889999999999


Q ss_pred             hcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------H
Q 037164           73 LTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------L  139 (250)
Q Consensus        73 ~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~  139 (250)
                      +.|++++|.++++.+.+.+-.+.    ...|..+...+.+.|++++|.+.++++... . +.+...+..+         .
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~  230 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQGDY  230 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999987653332    124567778899999999999999998753 2 2223333333         8


Q ss_pred             HHHHHHHHHHHhhhhccCCc-----hhhhcchhHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          140 YMAMTMLKKSEGLIATKRNS-----SNAFELKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       140 ~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      ++|.+.++++..........     ...|...++.+++.+.++....  |+...+..+...+.+.|++++|..+++++..
T Consensus       231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999988432211110     0022266777777777766533  6667778899999999999999999999875


Q ss_pred             CCCCCCCcchHHHHHHHHh---cCChhHHHHHHHHHHhcC
Q 037164          213 KNLPYDFGLPSSLIDAHCK---NGLLEKAQSLINHAETKK  249 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g  249 (250)
                      .  .|+...++.++..+..   .|+.+++..++++|.+++
T Consensus       311 ~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        311 R--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             h--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            4  6888899999988775   569999999999998765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.60  E-value=3.5e-13  Score=122.59  Aligned_cols=196  Identities=11%  Similarity=-0.040  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|.++++.+.+.+ +++..++..+...+.+.|++++|.+.++.+.+.  .|+..++..+..++.+.|++++|.+.+++
T Consensus       685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  761 (899)
T TIGR02917       685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEA  761 (899)
T ss_pred             HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            444444444444432 334445555555555555555555555555443  23445555556666666666666666666


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC---C
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK---V  182 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~  182 (250)
                      +...  .+.+...+..+         .++|...|+++.... |... . .+.       ..++ .++.+.++....   .
T Consensus       762 ~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~-~-~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       762 WLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA-V-VLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            5442  22333333333         677777777776443 2222 1 222       3333 445555544322   3


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +..++..+...+...|++++|..+|+++...+.. +..++..+..+|.+.|++++|.+++++|++
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            3466777888899999999999999999976543 889999999999999999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.9e-13  Score=108.05  Aligned_cols=116  Identities=13%  Similarity=0.077  Sum_probs=93.4

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh--hccccccc-------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ++|-++||--..|.|..++.+-...  .....+||       .....++..+|....+.||..|||+++.+.++.|+++.
T Consensus       212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~  291 (625)
T KOG4422|consen  212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFED  291 (625)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHH
Confidence            7888999999999999999887665  33344555       45557888999988899999999999999999998864


Q ss_pred             ----HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH-HHHHHHHHhh
Q 037164           80 ----IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG-MDKIINMTES  124 (250)
Q Consensus        80 ----a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~-a~~~~~~m~~  124 (250)
                          |.+++.+|++-|+.|+..+|..+|..+++-++..+ |..++.++.+
T Consensus       292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N  341 (625)
T KOG4422|consen  292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN  341 (625)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence                57888899999999999999999999999888644 5555555543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=3.8e-13  Score=107.40  Aligned_cols=204  Identities=11%  Similarity=0.035  Sum_probs=159.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH----HHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG----MDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~----a~~  117 (250)
                      ++.|.+++++-.+...+.+..+||.+|.+-+-..+    .++..+|.+..+.||..|+|+++++.++.|+++.    |.+
T Consensus       223 ~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalq  298 (625)
T KOG4422|consen  223 LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQ  298 (625)
T ss_pred             HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHH
Confidence            89999999999988889999999999988654333    8999999999999999999999999999998765    578


Q ss_pred             HHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHH-----hhhhccCCchhhhc-----------chhHHHH
Q 037164          118 IINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSE-----GLIATKRNSSNAFE-----------LKDQLYR  171 (250)
Q Consensus       118 ~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~~  171 (250)
                      ++.+|++- |++|...+|..+          ...+..++.+..     +...|..+.-+-|-           +..-...
T Consensus       299 il~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~  377 (625)
T KOG4422|consen  299 ILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQ  377 (625)
T ss_pred             HHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHH
Confidence            89999999 999999999988          233444444333     33333333110111           3333444


Q ss_pred             HHHHHhccCC-----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          172 IWKHYGQTRK-----V---FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       172 ~~~~~~~~~~-----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      +..+++....     +   ...-|..+....|.....+.-..+|+.|.-.-..|+..+...++++..-.|+++-..++|.
T Consensus       378 v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~  457 (625)
T KOG4422|consen  378 VHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWK  457 (625)
T ss_pred             HHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHH
Confidence            4445544321     2   2345667888899999999999999999988889999999999999999999999999999


Q ss_pred             HHHhcCC
Q 037164          244 HAETKKG  250 (250)
Q Consensus       244 ~m~~~g~  250 (250)
                      +++..|+
T Consensus       458 D~~~~gh  464 (625)
T KOG4422|consen  458 DSKEYGH  464 (625)
T ss_pred             HHHHhhh
Confidence            9998874

>PF13041 PPR_2: PPR repeat family

Probab=99.57  E-value=3.8e-15  Score=86.09  Aligned_cols=50  Identities=20%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK  231 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  231 (250)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999985

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.55  E-value=2.4e-12  Score=117.13  Aligned_cols=199  Identities=16%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+++++.+. .+.+..+|..+..+|.+.|++++|...++.+.+.+ +.+...+..+..++.+.|++++|.+++++
T Consensus       583 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  660 (899)
T TIGR02917       583 LKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR  660 (899)
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555555443 23344555555555555555555555555554431 22334455555555555555555555555


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~  183 (250)
                      +...  .+.+..++..+         .++|.++++.+.... |... . .+.       ..++.+++.+.++....  |+
T Consensus       661 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~  735 (899)
T TIGR02917       661 ALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA-L-GFELEGDLYLRQKDYPAAIQAYRKALKRAPS  735 (899)
T ss_pred             HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh-H-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence            4432  11122222222         455555555554322 1111 0 111       44555555555544322  44


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..++..+..++.+.|+.++|.+.++++... .+.+..+++.+...|...|++++|...|+++.+.
T Consensus       736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       736 SQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             chHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            455555666666666666666666666532 3445566666666666666666666666666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.31  E-value=7.9e-12  Score=99.34  Aligned_cols=230  Identities=16%  Similarity=0.058  Sum_probs=83.8

Q ss_pred             hHhhhccChhHHHHHHHH-hhhh-hccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164           12 NLIFEVHGVEQAEIYFDN-ISKL-LRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~-~~~~-~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      .++.+.|++++|.++++. +... .|+...|-            .+.|...++++...+-. ++..+..++.. ...+++
T Consensus        16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~   93 (280)
T PF13429_consen   16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP   93 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence            466788999999999954 4443 23433332            89999999999887533 56778888888 799999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK  148 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~  148 (250)
                      ++|.+++...-++  .++...+..++..+.+.++++++.++++........+++...|...         .++|...+++
T Consensus        94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999876544  3677788889999999999999999999987653556666666655         8899999988


Q ss_pred             HHhhhhccCCch-hhhc----chhHHHH---HHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          149 SEGLIATKRNSS-NAFE----LKDQLYR---IWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       149 ~~~~~~~~~~~~-~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                      ..... |++... ..+.    ..++..+   +++.+....+.+...+..+-.+|...|+.++|..+|++... ..+.|+.
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-~~p~d~~  249 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK-LNPDDPL  249 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-HSTT-HH
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-ccccccc
Confidence            87554 333211 0111    4444444   55555555556667788999999999999999999999774 3555888


Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +...+.+++...|+.++|.++..+..+
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            899999999999999999999887754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.31  E-value=1.4e-10  Score=100.13  Aligned_cols=197  Identities=14%  Similarity=0.062  Sum_probs=141.1

Q ss_pred             HHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC------------------------CCCCchhHhhh
Q 037164           47 MVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS------------------------INGDQFTLGIR  102 (250)
Q Consensus        47 ~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------i~p~~~ty~~l  102 (250)
                      .++..+...|+.||.+||..+|.-||..|+.+.|- +|..|+-..                        =.|...||+.|
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L   89 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL   89 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence            46778899999999999999999999999999998 888775221                        25788899999


Q ss_pred             HHHHHhcCChhHHHHHHH---HHhhC--------------------CCCCccHHHHHHH------HHHHHHHHHHHH--h
Q 037164          103 PSAYAAASDIHGMDKIIN---MTESN--------------------PQMVLDFNLLAVL------LYMAMTMLKKSE--G  151 (250)
Q Consensus       103 i~~~~~~~~~~~a~~~~~---~m~~~--------------------~g~~~~~~~~~~l------~~~a~~~~~~~~--~  151 (250)
                      +.+|...||+..-..+=+   .+...                    ++.-||..+-.-+      .+.+.+++..+-  .
T Consensus        90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa  169 (1088)
T KOG4318|consen   90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA  169 (1088)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            999999999765333322   22111                    2223333332222      222222222221  1


Q ss_pred             hhhccCCchhhhc----chhHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH
Q 037164          152 LIATKRNSSNAFE----LKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI  226 (250)
Q Consensus       152 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li  226 (250)
                      ...|...   ...    ....++++....+.... ++..+|.+++++-.-.|+++.|..++.+|+.+|++.+..-|-.|+
T Consensus       170 ~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl  246 (1088)
T KOG4318|consen  170 WNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL  246 (1088)
T ss_pred             ccchHHH---HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence            1111000   011    44456666666666555 899999999999999999999999999999999999999998988


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCC
Q 037164          227 DAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       227 ~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      -+   .++..-++.++.-|.+.||
T Consensus       247 ~g---~~~~q~~e~vlrgmqe~gv  267 (1088)
T KOG4318|consen  247 LG---INAAQVFEFVLRGMQEKGV  267 (1088)
T ss_pred             hc---CccchHHHHHHHHHHHhcC
Confidence            77   8899999999999999886

>PF12854 PPR_1: PPR repeat

Probab=99.23  E-value=1.3e-11  Score=64.58  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=17.3

Q ss_pred             CCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164           56 GFARRTIYCYIMMILNYLTGNREKIDALMLEM   87 (250)
Q Consensus        56 ~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m   87 (250)
                      |+.||..|||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>PF12854 PPR_1: PPR repeat

Probab=99.23  E-value=1.1e-11  Score=64.83  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           90 KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        90 ~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      +|+.||..|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            5899999999999999999999999999999984

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.17  E-value=1.4e-08  Score=89.80  Aligned_cols=109  Identities=3%  Similarity=-0.155  Sum_probs=57.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      +....|++++|...|+.+....|+.. .+.           .++|...|++..+.. +.+...+..+..++...|++++|
T Consensus        85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA  163 (656)
T PRK15174         85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA  163 (656)
T ss_pred             hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence            33446777777777776666533322 222           666666666666541 33455566666666666666666


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ...++.+....-. +...+..+ ..+.+.|++++|...++.+..
T Consensus       164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~  205 (656)
T PRK15174        164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP  205 (656)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence            6666655433111 11222222 234555666666655555433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.16  E-value=3.7e-08  Score=87.12  Aligned_cols=229  Identities=8%  Similarity=-0.085  Sum_probs=126.2

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      -.++.+.|++++|...|+......|+.. .+.           .++|...++.+.... +.+...+..+ ..+.+.|+++
T Consensus       117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~  194 (656)
T PRK15174        117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLP  194 (656)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHH
Confidence            3456667777777777777666533322 222           567777777665542 1222233222 3366677777


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HH----HHHHH
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LY----MAMTM  145 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~----~a~~~  145 (250)
                      +|..+++.+.+..-.++...+..+...+.+.|++++|...+++....  -+.+...+..+         .+    +|...
T Consensus       195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~  272 (656)
T PRK15174        195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEH  272 (656)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            77777777655432333444444556677777777777777776543  11222222222         23    35666


Q ss_pred             HHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          146 LKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      +++..... |+...  .+.       ..++.+++...++....  |+ ...+..+...+.+.|++++|...|+.+...  
T Consensus       273 ~~~Al~l~-P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--  347 (656)
T PRK15174        273 WRHALQFN-SDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--  347 (656)
T ss_pred             HHHHHhhC-CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            66655332 33221  221       44555555555544322  33 345556667777777777777777776643  


Q ss_pred             CCCC-cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          216 PYDF-GLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       216 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .|+. ..+..+..++...|+.++|...|++..+.
T Consensus       348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2332 22333455677777777777777776553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.12  E-value=3.8e-08  Score=86.80  Aligned_cols=225  Identities=11%  Similarity=0.006  Sum_probs=155.7

Q ss_pred             hhccChhHHHHHHHHhhhhh---cc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           15 FEVHGVEQAEIYFDNISKLL---RQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~---~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ...+++++|.+.|+......   |+ ...|.           .++|...|++..+.. +-+..+|..+..++...|++++
T Consensus       305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e  383 (615)
T TIGR00990       305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDK  383 (615)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence            34578999999998876531   21 11222           889999999988753 2336688888888999999999


Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164           80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE  150 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~  150 (250)
                      |...|++..+.. +.+..+|..+...+...|++++|.+.|++....  .+.+...+..+         +++|...+++..
T Consensus       384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al  460 (615)
T TIGR00990       384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK  460 (615)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999876652 235678888889999999999999999988753  22233333333         788888888877


Q ss_pred             hhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CCh-hh-------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          151 GLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VFN-KG-------YMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       151 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~-~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                      ... |....  .|.       ..++.+++.+.++....  |+. ..       ++.....+...|++++|..++++....
T Consensus       461 ~~~-P~~~~--~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       461 KNF-PEAPD--VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             HhC-CCChH--HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            543 33331  332       66666677666655322  211 11       122222344469999999999997754


Q ss_pred             CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       214 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      . +.+...+..+...+.+.|++++|...|++..+
T Consensus       538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3 33445688999999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.08  E-value=7.3e-08  Score=85.00  Aligned_cols=143  Identities=10%  Similarity=-0.001  Sum_probs=89.6

Q ss_pred             hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc---
Q 037164           98 TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE---  164 (250)
Q Consensus        98 ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~---  164 (250)
                      .|+.+-..+...|++++|...+++....   .|+ ...|..+         +++|...|++..... |....  .|.   
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~--~~~~lg  406 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD--IYYHRA  406 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH--HHHHHH
Confidence            4555555666667777777777766532   222 2222222         666777777665332 33321  222   


Q ss_pred             ----chhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhH
Q 037164          165 ----LKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEK  237 (250)
Q Consensus       165 ----~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  237 (250)
                          ..++.+++...++....  | +...+..+-..+.+.|++++|+..|++.... .+.+...++.+...+...|++++
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHH
Confidence                55666666666655422  3 3456666777888888888888888887642 34456778888888888888888


Q ss_pred             HHHHHHHHHh
Q 037164          238 AQSLINHAET  247 (250)
Q Consensus       238 a~~~~~~m~~  247 (250)
                      |...|++..+
T Consensus       486 A~~~~~~Al~  495 (615)
T TIGR00990       486 AIEKFDTAIE  495 (615)
T ss_pred             HHHHHHHHHh
Confidence            8888887664

>TIGR00540 hemY_coli hemY protein

Probab=99.07  E-value=1.9e-07  Score=78.24  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ...++-..+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++..
T Consensus       337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3446667788888999999988864444567888888888888888999999988888753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.03  E-value=1.1e-07  Score=79.31  Aligned_cols=223  Identities=12%  Similarity=-0.020  Sum_probs=132.5

Q ss_pred             ccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHH--HHHHHHhhcCChhhHHH
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCY--IMMILNYLTGNREKIDA   82 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~--~li~~~~~~g~~~~a~~   82 (250)
                      .|+++.|++.+...+...+++..|.            .+.|...+.++.+.  .|+...+-  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            3777777777776655433333333            67777788777664  35543332  22456777788888888


Q ss_pred             HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-ccHH------HHHHH-----------------
Q 037164           83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-LDFN------LLAVL-----------------  138 (250)
Q Consensus        83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~------~~~~l-----------------  138 (250)
                      .+++..+.. +-+......+...|.+.|++++|.+++..+.+. +.. ++..      .|..+                 
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            887776653 234556666778888888888888887777665 332 2211      11111                 


Q ss_pred             --------------------------HHHHHHHHHHHHhhhhccCCchhhhc--chhHHHHHHHHHhccCC--CCh-hhH
Q 037164          139 --------------------------LYMAMTMLKKSEGLIATKRNSSNAFE--LKDQLYRIWKHYGQTRK--VFN-KGY  187 (250)
Q Consensus       139 --------------------------~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~-~~~  187 (250)
                                                .++|.+++.+..+ ..++..-...|.  ..++..+..+..+....  |+. ...
T Consensus       253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~  331 (398)
T PRK10747        253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW  331 (398)
T ss_pred             HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHH
Confidence                                      4444444444433 111111000122  23444444444443322  433 556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .++-..+.+.|++++|.+.|+...+  ..|+...+..|...+.+.|+.++|.+++++-.
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6677778888888888888887764  45777777788888888888888888777653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.02  E-value=2e-07  Score=77.81  Aligned_cols=195  Identities=11%  Similarity=-0.010  Sum_probs=144.7

Q ss_pred             hhhccChhHHHHHHHHhhhhhccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      -.+.|+++.|.++|.++.+..|+...+.             .++|...+++..+.+ +-+......+...|.+.|++++|
T Consensus       128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence            3678999999999999987766654221             899999999998875 55678899999999999999999


Q ss_pred             HHHHHHHHhcCCCC-----------------------------------------CchhHhhhHHHHHhcCChhHHHHHH
Q 037164           81 DALMLEMEEKSING-----------------------------------------DQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        81 ~~~~~~m~~~gi~p-----------------------------------------~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      .+++..+.+.+..+                                         ++.....+...+...|+.++|.+++
T Consensus       207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L  286 (398)
T PRK10747        207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII  286 (398)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999888765432                                         2233445577888899999999999


Q ss_pred             HHHhhCCCCCccH-HHHHHH----HHHHHHHHHHHHhhhhccCCch-hhhc----chhHHHHHHHHHhccCC--CChhhH
Q 037164          120 NMTESNPQMVLDF-NLLAVL----LYMAMTMLKKSEGLIATKRNSS-NAFE----LKDQLYRIWKHYGQTRK--VFNKGY  187 (250)
Q Consensus       120 ~~m~~~~g~~~~~-~~~~~l----~~~a~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--~~~~~~  187 (250)
                      ++..+. .-.|.. ..|..+    .+++.+.++...+.. |++... .++.    ..++..++.+.++....  |+...|
T Consensus       287 ~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~  364 (398)
T PRK10747        287 LDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY  364 (398)
T ss_pred             HHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence            988764 333332 244444    667777777766443 444421 0111    77777777777777644  888889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      ..+-..+.+.|+.++|.+++++-.
T Consensus       365 ~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        365 AWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.01  E-value=3.5e-07  Score=69.89  Aligned_cols=183  Identities=9%  Similarity=-0.042  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.+ +.+...+..+...+...|++++|.+.+++
T Consensus        47 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  124 (234)
T TIGR02521        47 LEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQ  124 (234)
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            677777777776542 3456777888888888899999888888776653 33456777778888888899999888888


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcC
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLD  198 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g  198 (250)
                      ....+........+..+   +                 . .+...++..++.+.+...   .+.+...+..+...+...|
T Consensus       125 ~~~~~~~~~~~~~~~~l---~-----------------~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  183 (234)
T TIGR02521       125 AIEDPLYPQPARSLENA---G-----------------L-CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG  183 (234)
T ss_pred             HHhccccccchHHHHHH---H-----------------H-HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence            76541111111222111   0                 0 111222233333333222   1223456778889999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +.++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus       184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999998865 4456677778888999999999999998887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=7.9e-08  Score=81.17  Aligned_cols=224  Identities=11%  Similarity=0.011  Sum_probs=150.4

Q ss_pred             HhhhccChhHHHHHHHHhhhhhc----cccccc-------hhHHHHHHHH-HHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLR----QCLFFG-------VGKAEMVVQE-MKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~----~~~~y~-------~~~A~~~~~~-m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      +|...+++++|+++|+.+....|    +...|.       -+-++.++.+ +.+. -+-.+.+|-++-++|+-.++.+.|
T Consensus       362 ayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~A  440 (638)
T KOG1126|consen  362 AYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTA  440 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHH
Confidence            56777888888888888877632    333444       1222333322 2221 234567888888888888888888


Q ss_pred             HHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------------HHHHHHHHH
Q 037164           81 DALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------------LYMAMTMLK  147 (250)
Q Consensus        81 ~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------------~~~a~~~~~  147 (250)
                      ++.|++-.+  +.| ...+|+.+-+-+.....+|.|...|+....     .|+-.|++.            .+.|+-.|+
T Consensus       441 ik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  441 IKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             HHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            888885444  555 667888887888888888888888876653     355566666            666666666


Q ss_pred             HHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 037164          148 KSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF  219 (250)
Q Consensus       148 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  219 (250)
                      +...-. |.....     ..+...+..+++++++++...   .++..--.....+...++.++|...+++++. -++-+.
T Consensus       514 kA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es  591 (638)
T KOG1126|consen  514 KAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE-LVPQES  591 (638)
T ss_pred             hhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH-hCcchH
Confidence            665433 332211     011277888888888877654   4445555666777888889999999988873 345567


Q ss_pred             cchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          220 GLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       220 ~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .+|..|...|.+.|+.+.|..-|.-+.
T Consensus       592 ~v~~llgki~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  592 SVFALLGKIYKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             HHHHHHHHHHHHHccchHHHHhhHHHh
Confidence            778888888888898888877665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.91  E-value=5.3e-07  Score=84.94  Aligned_cols=109  Identities=11%  Similarity=-0.029  Sum_probs=71.1

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHH--------------
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYI--------------   66 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~--------------   66 (250)
                      .+.+.|++++|...|++.....|+. ..+.           .++|++.|++..+.. +.+...+..              
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~  438 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKAL  438 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHH
Confidence            3456677777777777766653332 2221           677777777766542 222333322              


Q ss_pred             ----------------------------HHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHH
Q 037164           67 ----------------------------MMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        67 ----------------------------li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~  117 (250)
                                                  +...+...|++++|.+.+++..+.  .| +...+..+...|.+.|++++|..
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                        334455678888888888877654  34 45667778888999999999999


Q ss_pred             HHHHHhh
Q 037164          118 IINMTES  124 (250)
Q Consensus       118 ~~~~m~~  124 (250)
                      .++++..
T Consensus       517 ~l~~al~  523 (1157)
T PRK11447        517 LMRRLAQ  523 (1157)
T ss_pred             HHHHHHH
Confidence            9998765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.91  E-value=1.5e-06  Score=78.11  Aligned_cols=83  Identities=12%  Similarity=0.016  Sum_probs=57.3

Q ss_pred             chhHHHHHHHHHhccCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCCcchHHHHHHHHhcCCh
Q 037164          165 LKDQLYRIWKHYGQTRK----VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-----LPYDFGLPSSLIDAHCKNGLL  235 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~  235 (250)
                      ..+...++.+.++.+..    .....--.+.++|...++.++|+.+|+......     .+++......|.-+|..++++
T Consensus       304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~  383 (822)
T PRK14574        304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL  383 (822)
T ss_pred             HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence            44445555555544432    234555677888999999999999998876432     122333357788899999999


Q ss_pred             hHHHHHHHHHHh
Q 037164          236 EKAQSLINHAET  247 (250)
Q Consensus       236 ~~a~~~~~~m~~  247 (250)
                      ++|..+++++.+
T Consensus       384 ~~A~~~l~~~~~  395 (822)
T PRK14574        384 DKAYQFAVNYSE  395 (822)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=2.6e-07  Score=78.17  Aligned_cols=221  Identities=7%  Similarity=-0.044  Sum_probs=149.0

Q ss_pred             hhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--------
Q 037164           20 VEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS--------   91 (250)
Q Consensus        20 ~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--------   91 (250)
                      ...-..++..+-+.......|+.++|...|.+..+. +.-+..+-.-+-.+|-..+++++|+++|+..++..        
T Consensus       313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me  391 (638)
T KOG1126|consen  313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME  391 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence            333344444444444555666677777777775443 22222344455566777777777777777665321        


Q ss_pred             -------------------------CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHH-------
Q 037164           92 -------------------------INGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVL-------  138 (250)
Q Consensus        92 -------------------------i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l-------  138 (250)
                                               -+-.+.||.++-++|.-.++.+.|+++|++..+   +.| ..++|+.+       
T Consensus       392 iyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~  468 (638)
T KOG1126|consen  392 IYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIAT  468 (638)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhh
Confidence                                     133568999999999999999999999998874   455 57888877       


Q ss_pred             --HHHHHHHHHHHHhhhhccCCchhhhc------chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164          139 --LYMAMTMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTL  207 (250)
Q Consensus       139 --~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  207 (250)
                        +++|...|+...... |+..+. .|.      +.+..+.+.-.++....   .+.+....+...+-+.|+.|+|++++
T Consensus       469 ee~d~a~~~fr~Al~~~-~rhYnA-wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~  546 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVD-PRHYNA-WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY  546 (638)
T ss_pred             HHHHhHHHHHHhhhcCC-chhhHH-HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence              788888888776332 111111 222      77777777666665543   44477777788899999999999999


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++....... |+-.----...+...++.++|...++++++
T Consensus       547 ~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  547 EKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             HHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            998754332 334434455667778899999999999875

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.87  E-value=3.5e-09  Score=55.86  Aligned_cols=35  Identities=23%  Similarity=0.169  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ   96 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~   96 (250)
                      .+||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            36888888888888888888888888888888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.81  E-value=8e-09  Score=54.16  Aligned_cols=33  Identities=15%  Similarity=0.137  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSING   94 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p   94 (250)
                      .+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.78  E-value=5.5e-07  Score=76.02  Aligned_cols=195  Identities=10%  Similarity=-0.025  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      +++|...+.+..+.. +--++.|+.|-..+-..|+...|...|.+-.  .+.|+- ..|-.|-..|...+.+++|...+.
T Consensus       200 l~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~  276 (966)
T KOG4626|consen  200 LEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--KLDPNFLDAYINLGNVYKEARIFDRAVSCYL  276 (966)
T ss_pred             cchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhh--cCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence            445555555544431 1123556666666666666666666666432  344543 456666666666666676666666


Q ss_pred             HHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--
Q 037164          121 MTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--  181 (250)
Q Consensus       121 ~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--  181 (250)
                      ....   ..|+ ...+..+         ++-|++.+++..... |.-.+  .|+       ..|++.++...+.....  
T Consensus       277 rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~--Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  277 RALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD--AYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH--HHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            6543   2232 3334333         666777776665433 22221  444       55666666666655422  


Q ss_pred             CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |+. ...+.|-..|...|+++.|..+|.....  +.|. ...+|-|-..|-+.|++++|...+++.++
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            332 5667777777777777777777776553  3333 45577777777778888888777777654

>PRK12370 invasion protein regulator; Provisional

Probab=98.77  E-value=2.4e-06  Score=74.44  Aligned_cols=78  Identities=9%  Similarity=-0.109  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ++|...+++..+.+ +-+..++..+-..+...|++++|...+++..+.  .|+ ...|..+-..+...|++++|...+++
T Consensus       321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45555555555442 234445555555555555555555555554443  232 33444455555555555555555555


Q ss_pred             Hh
Q 037164          122 TE  123 (250)
Q Consensus       122 m~  123 (250)
                      ..
T Consensus       398 Al  399 (553)
T PRK12370        398 CL  399 (553)
T ss_pred             HH
Confidence            44

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.77  E-value=3.6e-06  Score=77.28  Aligned_cols=195  Identities=14%  Similarity=0.032  Sum_probs=127.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|.+....  .|+......+...+...|++++|...++.+...  .|+...+..+...+.+.|++++|.+.+++
T Consensus       492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56677766666554  255444333444446778888888887765433  45555566666777777888888888877


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~  183 (250)
                      .... . +.+...+..+         .++|...+.+..... |+..   .|.       +.++.+++...++....  |+
T Consensus       568 AL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-P~~~---a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd  641 (987)
T PRK09782        568 AEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-PSAN---AYVARATIYRQRHNVPAAVSDLRAALELEPN  641 (987)
T ss_pred             HHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            7654 2 2222222222         566677766665333 2211   222       56666666666655433  44


Q ss_pred             h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          184 N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       184 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      . ..++.+-..+...|+.++|...|++.... .+-+...+..+-.++...|++++|...+++..+
T Consensus       642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4 66677777889999999999999988743 345677888999999999999999999988765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.76  E-value=3.4e-07  Score=77.24  Aligned_cols=197  Identities=10%  Similarity=-0.012  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      +++|...+.+....  .|+ ++.|..|-..|...|+.+.|...+++..+  ++|+- ..||.|-.++-..|++.+|++++
T Consensus       268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHH
Confidence            44444444444332  222 34444455555555555555555554333  33432 45666666666666666666666


Q ss_pred             HHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCC----chhhhcchhHHHHHHHHHhccCC--CCh
Q 037164          120 NMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRN----SSNAFELKDQLYRIWKHYGQTRK--VFN  184 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~  184 (250)
                      ++...-  .+...-..+.+         +++|..++.....-......    -...|.+.|.++++...+++...  |+.
T Consensus       344 nkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f  421 (966)
T KOG4626|consen  344 NKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF  421 (966)
T ss_pred             HHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence            655432  11111111111         44444444443321111110    00033355666666666655433  333


Q ss_pred             -hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 -KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                       ..|+.+-..|-..|+++.|...+.+...  +.| =...++-|-..|-.+|++.+|.+-++..+
T Consensus       422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL  483 (966)
T KOG4626|consen  422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL  483 (966)
T ss_pred             HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence             5566666666666666666666666553  222 24455666666666666666666665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.75  E-value=5.3e-06  Score=78.37  Aligned_cols=231  Identities=8%  Similarity=-0.051  Sum_probs=152.8

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ..+...|++++|.+.|++.....|+.. .+.           .++|...|++..+.. +.+...+..+...+...+++++
T Consensus       469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~  547 (1157)
T PRK11447        469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA  547 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence            345678999999999999887755532 211           899999999987753 3345555555556778899999


Q ss_pred             HHHHHHHHHhcCCCCCch---------hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHH
Q 037164           80 IDALMLEMEEKSINGDQF---------TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMT  144 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~---------ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~  144 (250)
                      |...++.+......++..         .+..+...+...|+.++|.++++.   .+.-.........+      .++|.+
T Consensus       548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~La~~~~~~g~~~~A~~  624 (1157)
T PRK11447        548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTLADWAQQRGDYAAARA  624 (1157)
T ss_pred             HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            999988764433333221         123456778889999999999872   21221111222222      888898


Q ss_pred             HHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164          145 MLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP  216 (250)
Q Consensus       145 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  216 (250)
                      .|++..... |.....     ..|...++..++.+.++....  | +...+..+-.++...|+.++|..++++.......
T Consensus       625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            888887543 333321     011155666677666665433  3 3355667778889999999999999998754322


Q ss_pred             --C---CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          217 --Y---DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       217 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                        |   +..++..+...+...|++++|...+++.+.
T Consensus       704 ~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        704 QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              2   123455557778899999999999998864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=2.5e-06  Score=66.73  Aligned_cols=203  Identities=14%  Similarity=0.043  Sum_probs=143.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch------hHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF------TLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~------ty~~li~~~~~~~~~~~a  115 (250)
                      .++|.++|-+|.+.+ +-+..+--+|-+.|-+.|..|+|+++.+.+.++   ||..      ..--|-.=|..+|-+|.|
T Consensus        51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            899999999998852 333445567888999999999999999998776   4432      233456778889999999


Q ss_pred             HHHHHHHhhCCCCCccH-HHHHHH------HHHHHHHHHHHHhhhhc-cCCch-hhhc-------chhHHHHHHHHHhcc
Q 037164          116 DKIINMTESNPQMVLDF-NLLAVL------LYMAMTMLKKSEGLIAT-KRNSS-NAFE-------LKDQLYRIWKHYGQT  179 (250)
Q Consensus       116 ~~~~~~m~~~~g~~~~~-~~~~~l------~~~a~~~~~~~~~~~~~-~~~~~-~~~~-------~~~~~~~~~~~~~~~  179 (250)
                      +++|..+...+...+.. -....+      .++|+++-.++.+.... ..... ..|-       ...+++++...++..
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999997753444332 122222      77777777766633221 11100 0111       556677777777665


Q ss_pred             CC--CChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          180 RK--VFNKGYMTMM-GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       180 ~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..  |+.+--++++ ......|++..|.+.|+...+.+...-..+...|..+|...|+.++...++.++.+.
T Consensus       207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            43  4443334433 677889999999999999998777777788999999999999999999999888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.73  E-value=4.7e-06  Score=63.59  Aligned_cols=160  Identities=12%  Similarity=-0.003  Sum_probs=117.0

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.... . +.+...+..+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~~~~~~~~~~  105 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-N-PNNGDVLNNY  105 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCHHHHHHH
Confidence            345778888999999999999999999887652 334677888889999999999999999988754 2 1222222222


Q ss_pred             ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164          139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN  209 (250)
Q Consensus       139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  209 (250)
                               +++|.+.+.+......                         .+.....+..+...+...|+.++|...+.+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPL-------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTR  160 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccc-------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     4444444444432110                         011234566677889999999999999999


Q ss_pred             HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       210 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .... .+.+...+..+...+...|++++|...+++..+
T Consensus       161 ~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       161 ALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             HHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8754 333567888999999999999999999998765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.72  E-value=7.1e-06  Score=73.92  Aligned_cols=228  Identities=12%  Similarity=-0.059  Sum_probs=142.9

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc--------ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL--------FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~--------~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      ..++.|+++.|...|.+..+..|+..        .+.    .++|+.++++.... -.........+...|...|++++|
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            45678888888888888877655532        111    77888887777621 111222233334567777888888


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHh
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEG  151 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~  151 (250)
                      .++++++.+.. +-|...+..++..+...++.++|.+.++++...   .|+...+..+         ..+|++.++++..
T Consensus       122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            88888876652 223455666677888888888888888877643   3333333222         2246666666653


Q ss_pred             hhhccCCchhhhc------------------------------------------------------chhHHHHHHHHHh
Q 037164          152 LIATKRNSSNAFE------------------------------------------------------LKDQLYRIWKHYG  177 (250)
Q Consensus       152 ~~~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~  177 (250)
                      .. |..... .+.                                                      +...+++++..+.
T Consensus       198 ~~-P~n~e~-~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~  275 (822)
T PRK14574        198 LA-PTSEEV-LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ  275 (822)
T ss_pred             hC-CCCHHH-HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            32 222210 111                                                      1113333333333


Q ss_pred             cc----CC-CCh-hhH-H---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          178 QT----RK-VFN-KGY-M---TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       178 ~~----~~-~~~-~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..    .. |.. ..| .   =.+-++.+.|++.++++-|+.+...+.+.-..+-..+.++|...+++++|..+++.+..
T Consensus       276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~  355 (822)
T PRK14574        276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY  355 (822)
T ss_pred             HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence            32    12 322 222 2   33468889999999999999999888765567888999999999999999999998865

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.72  E-value=4.9e-08  Score=77.61  Aligned_cols=201  Identities=15%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHHHCCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|.+++.+-....-+| |..-|..+...+...++++.|.+.++.+...+-. +...+..++.. ...+++++|.+++.
T Consensus        24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~  101 (280)
T PF13429_consen   24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAE  101 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccc
Confidence            789999997665443234 4444555556777899999999999999876544 56677778777 79999999999998


Q ss_pred             HHhhCCCCCccH-HHHHHH------HHHHHHHHHHHHhhhh-ccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164          121 MTESNPQMVLDF-NLLAVL------LYMAMTMLKKSEGLIA-TKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       121 ~m~~~~g~~~~~-~~~~~l------~~~a~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~  183 (250)
                      ..-+. .-.|.. ..+..+      .+++.+++.+...... +.+. . .|.       +.|+..++.+.++....  |+
T Consensus       102 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  102 KAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA-R-FWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             -----------------H-HHHTT-HHHHHHHHHHHHH-T---T-H-H-HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             ccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            76544 222222 111111      7888888888774332 2222 1 222       77888888888877643  54


Q ss_pred             -hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 -NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                       ....+.++..+...|+.+++..+++...... +.|...|..+..+|...|+.++|..++++..+.
T Consensus       179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  179 DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence             5778899999999999999999999988543 778889999999999999999999999998763

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.71  E-value=3.8e-08  Score=51.78  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF  219 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  219 (250)
                      .+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.70  E-value=1.4e-05  Score=72.34  Aligned_cols=112  Identities=6%  Similarity=-0.042  Sum_probs=63.0

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      .+.+....|+.++|.+++.......|... .+.           .++|..+|++..+.. +.+...+..+..++...|++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence            34455556666666666666554211111 111           666666666665542 33445555666666666666


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ++|...+++..+. -+.+.. +..+...+...|+.++|...+++...
T Consensus       100 ~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049        100 DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666665554 222333 55566666666666666666666643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.64  E-value=2.6e-05  Score=70.67  Aligned_cols=230  Identities=9%  Similarity=-0.032  Sum_probs=156.9

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+-.++.+.|++++|..+|+......|+.. .+.           .++|...+++..+. .+.+.. +..+..++...|+
T Consensus        54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~  131 (765)
T PRK10049         54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGR  131 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCC
Confidence            344567889999999999999877644432 222           89999999999886 345566 8889999999999


Q ss_pred             hhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-------HHHHH----------
Q 037164           77 REKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-------LLAVL----------  138 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-------~~~~l----------  138 (250)
                      +++|...+++..+.  .| +...+..+...+...++.+.|.+.++.....    |+..       ....+          
T Consensus       132 ~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~----p~~~~~l~~~~~~~~~r~~~~~~~~~  205 (765)
T PRK10049        132 HWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT----PAEKRDLEADAAAELVRLSFMPTRSE  205 (765)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhcccccCh
Confidence            99999999988775  44 4455666788888999999999988765532    2210       00000          


Q ss_pred             ------HHHHHHHHHHHHhhh--hccCCchhhh-----------cchhHHHHHHHHHhccCC--CC-h-hhHHHHHHHHH
Q 037164          139 ------LYMAMTMLKKSEGLI--ATKRNSSNAF-----------ELKDQLYRIWKHYGQTRK--VF-N-KGYMTMMGLLL  195 (250)
Q Consensus       139 ------~~~a~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~~-~-~~~~~li~~~~  195 (250)
                            .++|.+.++.+....  .|... . .+           ...++..++...++....  ++ + ..-..+...|.
T Consensus       206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~-~-~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl  283 (765)
T PRK10049        206 KERYAIADRALAQYDALEALWHDNPDAT-A-DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL  283 (765)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCCccc-h-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence                  256777777776432  22221 0 11           134455556665555433  11 1 12223567899


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          196 KLDDVKGAEKTLRNWTSKNLPY---DFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       196 ~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..|+.++|+.+|++........   .......|..++...|++++|..+++++.+.
T Consensus       284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~  339 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN  339 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence            9999999999999987432111   1234666777899999999999999988753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.62  E-value=4.7e-05  Score=61.23  Aligned_cols=229  Identities=12%  Similarity=-0.007  Sum_probs=150.6

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc--ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL--FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      .+--+.|+.+.|-+++.+.-+..++..  .+-           .+.|..-..++.+.+ +-++..-.....+|.+.|++.
T Consensus       126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~  204 (400)
T COG3071         126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQ  204 (400)
T ss_pred             HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHH
Confidence            344455666666666666655522221  111           456666666666653 345577788888888888888


Q ss_pred             hHHHHHHHHHhcCCCCCc-------hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------HHHHHH
Q 037164           79 KIDALMLEMEEKSINGDQ-------FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-------LYMAMT  144 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~-------~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------~~~a~~  144 (250)
                      .+..++..|.+.|+--|.       .+|+.++.-....+..+.-...++.......-.|....-.+.       .++|.+
T Consensus       205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~  284 (400)
T COG3071         205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE  284 (400)
T ss_pred             HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence            888888888888776544       367778877777777777777777764432333443322222       777777


Q ss_pred             HHHHHHhh-hhccCCchhhhc------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164          145 MLKKSEGL-IATKRNSSNAFE------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY  217 (250)
Q Consensus       145 ~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  217 (250)
                      +..+..+. ..+.-.   .+-      +.+...+..+.--...+.+.-.+.++-..|.+.+.+.+|...|+...  ...|
T Consensus       285 ~i~~~Lk~~~D~~L~---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~  359 (400)
T COG3071         285 IIEDALKRQWDPRLC---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL--KLRP  359 (400)
T ss_pred             HHHHHHHhccChhHH---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCC
Confidence            77776632 211111   111      33333333333222233444777888899999999999999999654  4789


Q ss_pred             CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          218 DFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       218 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      +..+|+.+-.++.+.|+.++|.++.++..
T Consensus       360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         360 SASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            99999999999999999999999988754

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.59  E-value=5.7e-08  Score=49.62  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSI   92 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi   92 (250)
                      +|||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677777777777777777777777777664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=7.5e-05  Score=61.35  Aligned_cols=60  Identities=12%  Similarity=-0.023  Sum_probs=27.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      ...|.+|-.+|.+.++.++|++.|.....-|- .+...+..|-+.|-+-++.++|...+.+
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34445555555555555555555544442111 1224444444444444444444444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.55  E-value=1.1e-05  Score=68.39  Aligned_cols=219  Identities=13%  Similarity=0.042  Sum_probs=135.6

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhh---c---ccc------ccc--------hhHHHHHHHHHHH-------CCCCccH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLL---R---QCL------FFG--------VGKAEMVVQEMKD-------MGFARRT   61 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~---~---~~~------~y~--------~~~A~~~~~~m~~-------~~~~p~~   61 (250)
                      .+-.+|+..|+++.|+.+|+.-....   .   .+.      .+.        ..+|..+|+++..       ..-+--+
T Consensus       204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va  283 (508)
T KOG1840|consen  204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA  283 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            56678999999999999998754431   0   000      111        5666666666533       2233345


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHh---c--CC-CCCch-hHhhhHHHHHhcCChhHHHHHHHHHhhCC--CCCcc-
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEE---K--SI-NGDQF-TLGIRPSAYAAASDIHGMDKIINMTESNP--QMVLD-  131 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~---~--gi-~p~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~~~--g~~~~-  131 (250)
                      .+++.|-.+|.+.|++++|..++++..+   +  |. .|.+. -++.+...|+..+++++|..+++...+..  -..++ 
T Consensus       284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~  363 (508)
T KOG1840|consen  284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN  363 (508)
T ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence            7788888999999999999888886432   2  22 23333 35667788999999999999988654320  11222 


Q ss_pred             ---HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 037164          132 ---FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD  199 (250)
Q Consensus       132 ---~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  199 (250)
                         ..+++.+         +++|.+++++............                   ........+.+-..|.+.++
T Consensus       364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~-------------------~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK-------------------DYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc-------------------ChhhhHHHHHHHHHHHHhcc
Confidence               2333333         5556665555542221111100                   00123456667777888888


Q ss_pred             HHHHHHHHHHHH----hCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          200 VKGAEKTLRNWT----SKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       200 ~~~A~~~~~~m~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ...|.++|.+..    .-|.  +-...+|..|...|.+.|+++.|.++.+...
T Consensus       425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            888888887732    2222  2234567888888888888888888877765

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.54  E-value=1.9e-07  Score=48.75  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY  217 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  217 (250)
                      .+|+++|.+|++.|+++.|.++|+.|++.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.53  E-value=2e-05  Score=67.42  Aligned_cols=231  Identities=12%  Similarity=0.045  Sum_probs=130.8

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc--h---------------hHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG--V---------------GKAEMVVQEMKDMGFARRTIYCYIMMILN   71 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~--~---------------~~A~~~~~~m~~~~~~p~~~~y~~li~~~   71 (250)
                      ..-..+.+.|+.++|...+..+....|+-..|-  +               +...++++++.+.-  |.......+.-.+
T Consensus        43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~  120 (517)
T PF12569_consen   43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDF  120 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhccc
Confidence            344566677777777777777766655554444  1               22233344333321  2222221121111


Q ss_pred             hhcCCh-hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-------------CCCccHHHHHH
Q 037164           72 YLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNP-------------QMVLDFNLLAV  137 (250)
Q Consensus        72 ~~~g~~-~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-------------g~~~~~~~~~~  137 (250)
                      ..-..+ ..+..++..+..+||+   .+|+.|-..|......+-..+++.......             .-.|+...|..
T Consensus       121 ~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~  197 (517)
T PF12569_consen  121 LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL  197 (517)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence            111111 2445555556666653   455555556665555555555555543210             11244433433


Q ss_pred             H-----------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 037164          138 L-----------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLK  196 (250)
Q Consensus       138 l-----------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~  196 (250)
                      .           +++|++..++..... |+...  .|.       +.|++.++.+.+.....   .|-..=+-....+.+
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~e--ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVE--LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            3           666666666555333 22221  222       78888888887766544   444666678889999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCcch--------HHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          197 LDDVKGAEKTLRNWTSKNLPYDFGLP--------SSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .|++++|++++......+..|-...+        ..--.+|.+.|++..|.+.|....+
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999877765533332        4556789999999999988877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.51  E-value=1.5e-07  Score=48.06  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=18.9

Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      +||+||++|++.|++++|.++|++|.++|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            566666666666666666666666666553

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.2e-05  Score=63.61  Aligned_cols=229  Identities=10%  Similarity=0.036  Sum_probs=159.9

Q ss_pred             hhHhhhccChhHHHHHHHHhhhh-hccccccc--------hhHHHHHHHH---HHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKL-LRQCLFFG--------VGKAEMVVQE---MKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~--------~~~A~~~~~~---m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      -+-+...+++.+..++++.+.+. ++...++.        ..+..++|.-   |.+ ..|..+.+|-++-.-|...|+.+
T Consensus       251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHHHHHHhcCcH
Confidence            34556678888888888887776 45555555        4445555543   333 35677888988888888889999


Q ss_pred             hHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHH-------HHHHHHHHHHH
Q 037164           79 KIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVL-------LYMAMTMLKKS  149 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l-------~~~a~~~~~~~  149 (250)
                      +|.++|.  +...+.|.- ..|-..-++|+-.+..|+|...+...-+- +|.- -+..|..+       ++-|.+.|...
T Consensus       330 eARry~S--Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  330 EARRYFS--KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             HHHHHHH--HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999998  444555443 56777888888888889888888766332 2332 23444444       77788888777


Q ss_pred             HhhhhccCCchhhhc-------chhHHHHHHHHHhcc-------CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          150 EGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT-------RK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       150 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      .... |.++ . .++       ..+...++...++..       ..   ....+++.|-++|.+.++.++|+..+++...
T Consensus       407 ~ai~-P~Dp-l-v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  407 LAIA-PSDP-L-VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             HhcC-CCcc-h-hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6544 3333 1 222       344444444444332       11   2456788899999999999999999999874


Q ss_pred             CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      . .+-|..++.++--.|...|+++.|.+.|++.+.
T Consensus       484 l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  484 L-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             c-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            4 455889999999999999999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=2.7e-05  Score=63.84  Aligned_cols=192  Identities=10%  Similarity=0.100  Sum_probs=117.9

Q ss_pred             ccChhHHHHHHHHhhhhhccc--cccc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164           17 VHGVEQAEIYFDNISKLLRQC--LFFG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM   84 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~--~~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~   84 (250)
                      .|++++|..++.+......+.  -.|+          +++|++.|-++... +..++.+.--+.+.|-...++..|.+++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            567777777776655431111  1222          67777777766543 3455666666677777777777777776


Q ss_pred             HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc
Q 037164           85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE  164 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~  164 (250)
                      .+..+. ++-|+...+-|-..|-+.||-..|.+++=+--.-  ++-+..|.-.+           ..          -|.
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl-----------~a----------yyi  637 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWL-----------AA----------YYI  637 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHH-----------HH----------HHH
Confidence            644332 4445566666777777777777777765444322  22222221111           00          011


Q ss_pred             chhHHHHHHHHHhcc--CCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC
Q 037164          165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMG-LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL  234 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  234 (250)
                      .-.-.+++++.++..  ..|+..-|..+|. ++.+.|++.+|.++|+... ..++-|....-.|++.+...|.
T Consensus       638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhccccc
Confidence            333334445555443  2388888998885 5567799999999999987 4577788889999998888775

>PRK12370 invasion protein regulator; Provisional

Probab=98.45  E-value=6e-05  Score=65.81  Aligned_cols=195  Identities=11%  Similarity=-0.000  Sum_probs=131.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHh---------hcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCC
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNY---------LTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~---------~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~  111 (250)
                      .++|..+|++..+.. +-+...|..+..+|.         ..+++++|...+++..+.  .| +...|..+-..+...|+
T Consensus       277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccC
Confidence            689999999998863 334556666655554         234578999999977764  44 55677778788999999


Q ss_pred             hhHHHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc------chhHHHHHHHH
Q 037164          112 IHGMDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKH  175 (250)
Q Consensus       112 ~~~a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  175 (250)
                      +++|...+++....   .|+ ...+..+         .++|...+++..... |..... .+.      ..++.+++...
T Consensus       354 ~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~-~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        354 YIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA-GITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh-HHHHHHHHHhccCHHHHHHH
Confidence            99999999998754   233 2333333         888999998887544 232211 111      44555666666


Q ss_pred             HhccC---CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          176 YGQTR---KVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       176 ~~~~~---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +++..   +|+. ..+..+-.++...|+.++|...+.++.. ..+.+....+.|...|+..|  +.|...++.+.+
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            55432   2433 4466677788899999999999988753 23334455666667778777  478887777665

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.44  E-value=0.00035  Score=59.98  Aligned_cols=230  Identities=11%  Similarity=0.019  Sum_probs=166.5

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      +.|.+.+.++-|.-+|....+..|. .+.|.           .+.-..+|++.... ++.....|--...-+-..|++-.
T Consensus       524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~  602 (913)
T KOG0495|consen  524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA  602 (913)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence            3567778888888888876666333 33333           78888888888876 55556666666677888999999


Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHHhhh
Q 037164           80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSEGLI  153 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~  153 (250)
                      |..++.+.-+.. +-+...|-.-++.-.....+++|..+|.+.....|.+--+.-+..+      .++|.+++++..+..
T Consensus       603 ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f  681 (913)
T KOG0495|consen  603 ARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF  681 (913)
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence            999999877652 2366888888999999999999999999987653443333333333      778888887766544


Q ss_pred             hccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchH
Q 037164          154 ATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPS  223 (250)
Q Consensus       154 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  223 (250)
                      .....   .|.       +.+.++.+-+.+...   ++-....|..+-..=-+.|.+-.|..+++.-+ ...+-+...|-
T Consensus       682 p~f~K---l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar-lkNPk~~~lwl  757 (913)
T KOG0495|consen  682 PDFHK---LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR-LKNPKNALLWL  757 (913)
T ss_pred             CchHH---HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH-hcCCCcchhHH
Confidence            22222   333       445555555554443   33444777777777788899999999999987 44566899999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 037164          224 SLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       224 ~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..|+.=.+.|+.+.|..++.+.++
T Consensus       758 e~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  758 ESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.43  E-value=7.4e-05  Score=68.89  Aligned_cols=182  Identities=11%  Similarity=-0.029  Sum_probs=132.2

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-  138 (250)
                      +...|..+-.++.. +++++|...+.+-...  .|+......+...+...|++++|...++++...+...+.......+ 
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence            67788888888877 8899999977766544  3665543344455568999999999999976531111122211111 


Q ss_pred             -----HHHHHHHHHHHHhhhhccCCchhhhc----ch---hHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHH
Q 037164          139 -----LYMAMTMLKKSEGLIATKRNSSNAFE----LK---DQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAE  204 (250)
Q Consensus       139 -----~~~a~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~  204 (250)
                           .++|...+.+..... |....  .+.    ..   ++..++...++....  |+...|..+-..+.+.|+.++|+
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~-P~~~~--l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~  629 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRG-LGDNA--LYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAV  629 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcC-CccHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                 788899988887543 33221  221    33   788888888776643  67788899999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       205 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..|++.... .+.+...++.+-..+...|+.++|...+++..+.
T Consensus       630 ~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l  672 (987)
T PRK09782        630 SDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG  672 (987)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999998854 3446678888888999999999999999988753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.4e-05  Score=62.63  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--  138 (250)
                      .|+-++-+-|+-.++.++|..+|++-.+  +.|. ...|+.+-+-|....+...|.+.++.....  .+-|.-.|..+  
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQ  406 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhH
Confidence            4556666666666666666666664433  2332 244555556666666666666666655532  22232222222  


Q ss_pred             -------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHH
Q 037164          139 -------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGA  203 (250)
Q Consensus       139 -------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A  203 (250)
                             ..=|+-.|++... ..|.+.+.     ..|.+.+..+++.+.++....   .....+..|-..|-+.++..+|
T Consensus       407 aYeim~Mh~YaLyYfqkA~~-~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALE-LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence                   2222333333321 12222210     011255555555555555433   2224555555666666666666


Q ss_pred             HHHHHHHH
Q 037164          204 EKTLRNWT  211 (250)
Q Consensus       204 ~~~~~~m~  211 (250)
                      -..|++..
T Consensus       486 a~~yek~v  493 (559)
T KOG1155|consen  486 AQYYEKYV  493 (559)
T ss_pred             HHHHHHHH
Confidence            66655544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=3.2e-05  Score=60.90  Aligned_cols=196  Identities=9%  Similarity=0.000  Sum_probs=117.1

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHH-HHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYC-YIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y-~~li~~~~~~g~~~~   79 (250)
                      .+|-+.|...+|++.|..-....|-+.+|-           ++.|+.+|.+-.+. + |-.+|| .-+...+-..++.++
T Consensus       231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-f-P~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-F-PFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-C-CchhhhhhhhHHHHHHHHhHHH
Confidence            356677888888888877665555555544           67777777776664 3 444444 344556677777888


Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164           80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE  150 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~  150 (250)
                      |.+++++..+.. .-|+.....+-.+|.-.++.+-|.+.++++.+- |+. +...|..+         ++-++..|.+..
T Consensus       309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            888887755431 225555666667777778888888888887776 653 33344433         566666666655


Q ss_pred             hhhh-ccCCchhhhc------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          151 GLIA-TKRNSSNAFE------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       151 ~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      .-.. |....-+.|+      ..|+..-+-..++-...  ++. ..+|.|--.-.+.|+++.|..+++...+
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            2221 2222111444      55555555555443322  222 5666666666677777777777776554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.39  E-value=0.00066  Score=54.84  Aligned_cols=233  Identities=15%  Similarity=0.032  Sum_probs=142.7

Q ss_pred             hhHhhh--ccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164           11 LNLIFE--VHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus        11 l~~~~k--~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+++-+  .|+|.+|+++...-.+..+.+. .|-           .+.|-.++.+..+.--.++...+-+.-......|+
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d  168 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD  168 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence            334444  4889999998888666544443 333           78888888888876335666777777788888999


Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHH-HHHHHHH-----
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAM-TMLKKSE-----  150 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~-~~~~~~~-----  150 (250)
                      ...|..-.++..+.+= -+.........+|.+.|++.++..++..+.+. |.--|. -+..+-..|. .++++..     
T Consensus       169 ~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~-e~~~le~~a~~glL~q~~~~~~~  245 (400)
T COG3071         169 YPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDE-EAARLEQQAWEGLLQQARDDNGS  245 (400)
T ss_pred             chhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChH-HHHHHHHHHHHHHHHHHhccccc
Confidence            9988888887766532 25667788889999999999999999999887 664432 2222211111 1111111     


Q ss_pred             -----------hhhhccCCchhhhc----chhHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          151 -----------GLIATKRNSSNAFE----LKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       151 -----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                                 .....+..-.++|.    .+++-+++.+..++.-+  .|..  -+..-.+.+-++...-++..++... 
T Consensus       246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~-  322 (400)
T COG3071         246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK-  322 (400)
T ss_pred             hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH-
Confidence                       00000000000222    44444455444444322  2222  2222344455555555555555542 


Q ss_pred             CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          214 NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       214 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      ..+-++-.+.+|-..|.+.+.|.+|...|+...+.+
T Consensus       323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~  358 (400)
T COG3071         323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR  358 (400)
T ss_pred             hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence            233356889999999999999999999999876643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.38  E-value=6.7e-05  Score=66.61  Aligned_cols=235  Identities=14%  Similarity=0.060  Sum_probs=162.9

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh-----hccc-------cccc----------hhHHHHHHHHHHHCCCCccHHHHHH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL-----LRQC-------LFFG----------VGKAEMVVQEMKDMGFARRTIYCYI   66 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~-----~~~~-------~~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~   66 (250)
                      .+=......|.++.|...|......     .++.       ..||          .+.|.+.|....+..  |+-+..-.
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~yl  534 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYL  534 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHH
Confidence            3444567789999999999876655     2222       1566          677889999987752  55444333


Q ss_pred             HHHH-HhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------
Q 037164           67 MMIL-NYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-------  138 (250)
Q Consensus        67 li~~-~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------  138 (250)
                      -+.+ --..++..+|...+++...- ...|+..++.+-..|.+...+.-|.+-|+.+...+...+|.++..+|       
T Consensus       535 Rl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~  613 (1018)
T KOG2002|consen  535 RLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA  613 (1018)
T ss_pred             HhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence            3333 33456778888888886553 23355555557778999999999999888876653444676666555       


Q ss_pred             --------------HHHHHHHHHHHHhhhhccCC-----chhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 037164          139 --------------LYMAMTMLKKSEGLIATKRN-----SSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLK  196 (250)
Q Consensus       139 --------------~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~  196 (250)
                                    .++|+++|.+..+....+-.     .. ++...+.+..+..+|.+...   ....+|-.+-++|..
T Consensus       614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi-VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI-VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE  692 (1018)
T ss_pred             hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh-hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence                          77788887776643311111     00 11266666777666655533   345889999999999


Q ss_pred             cCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          197 LDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .|++..|.+.|+...++ ....++.+...|-+++-++|.+.+|.+.+.....
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999999997654 5666888899999999999999999887766543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00061  Score=53.74  Aligned_cols=188  Identities=10%  Similarity=-0.023  Sum_probs=122.0

Q ss_pred             ccChhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHCCCCccH------HHHHHHHHHHhhcCC
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDMGFARRT------IYCYIMMILNYLTGN   76 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~------~~y~~li~~~~~~g~   76 (250)
                      ..+.++|.++|-+|.+.  ++.+|.              +++|+++.+.+.++   ||.      ..--.|-.=|...|-
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence            46778899999998875  445554              89999999988775   552      222344455788899


Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH----HHHH---------HHHHH
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL----LAVL---------LYMAM  143 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~----~~~l---------~~~a~  143 (250)
                      +|.|+.+|..+.+.|-- -...---|+..|-..+++++|.++-+++... +-.+..+-    |.-+         .++|.
T Consensus       123 ~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         123 LDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            99999999988775322 2345566889999999999999998877655 33332222    2222         77777


Q ss_pred             HHHHHHHhhhhccCCchhhhc------chhHHHHHHHHHhcc---CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          144 TMLKKSEGLIATKRNSSNAFE------LKDQLYRIWKHYGQT---RK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                      ..+++.......+.. . +..      ..|+...+.+.++..   .+ .-..+-..|..+|...|+.++...++..+...
T Consensus       201 ~~l~kAlqa~~~cvR-A-si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         201 ELLKKALQADKKCVR-A-SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHhhCcccee-h-hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            777777644322222 2 221      444444444443332   22 33456677888999999998888888886543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.37  E-value=0.0002  Score=57.46  Aligned_cols=80  Identities=9%  Similarity=-0.095  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|...|++..+.. +.+...|+.+-..|...|++++|...|+...+  +.|+ ..+|..+..++...|++++|.+.++
T Consensus        80 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189         80 RALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            566677777766653 34466777777777777777777777776554  3343 4556666666777777777777777


Q ss_pred             HHhh
Q 037164          121 MTES  124 (250)
Q Consensus       121 ~m~~  124 (250)
                      ....
T Consensus       157 ~al~  160 (296)
T PRK11189        157 AFYQ  160 (296)
T ss_pred             HHHH
Confidence            6653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=3.6e-05  Score=63.16  Aligned_cols=224  Identities=9%  Similarity=0.040  Sum_probs=138.7

Q ss_pred             HhhhccChhHHHHHHHHhhhhh-cccc--ccc------------hhHHHHHHHHHHHCCCCccHHHHHHH-----HHHHh
Q 037164           13 LIFEVHGVEQAEIYFDNISKLL-RQCL--FFG------------VGKAEMVVQEMKDMGFARRTIYCYIM-----MILNY   72 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~-~~~~--~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~l-----i~~~~   72 (250)
                      -|-|.|+++.|.+++....+.. ...+  .-+            +..|..+-+....      ..-||.-     -+.-.
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALTNKGNIAF  501 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhhcCCceee
Confidence            3678899999999888776651 1111  001            3344443333322      2233322     12234


Q ss_pred             hcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-------HHHHH--HHHHH
Q 037164           73 LTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-------LLAVL--LYMAM  143 (250)
Q Consensus        73 ~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-------~~~~l--~~~a~  143 (250)
                      ..|++++|.+.+++...++-.-....||+=+ .+-+.|++++|+++|-.+...  +..+..       +|-.+  ...|+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            5789999999999988774433334444433 355689999999998877532  111221       22222  45566


Q ss_pred             HHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          144 TMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       144 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      +++......+ |+++.+     ..|.+.|+-..+++..-....  | +..+..=|-..|....-.++|+..|++..  =+
T Consensus       579 e~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li  655 (840)
T KOG2003|consen  579 ELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI  655 (840)
T ss_pred             HHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence            6665554433 444410     022256666666666544433  3 44666666677788888899999999864  37


Q ss_pred             CCCCcchHHHHHHHHh-cCChhHHHHHHHHHHhc
Q 037164          216 PYDFGLPSSLIDAHCK-NGLLEKAQSLINHAETK  248 (250)
Q Consensus       216 ~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~  248 (250)
                      .|+..-|..||..|.+ .|++.+|..+++++.++
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            8999999999998876 79999999999987653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.31  E-value=0.00025  Score=56.90  Aligned_cols=204  Identities=8%  Similarity=-0.125  Sum_probs=132.9

Q ss_pred             cccchhHHHHHHHHHHHCC-CCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhH
Q 037164           38 LFFGVGKAEMVVQEMKDMG-FARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHG  114 (250)
Q Consensus        38 ~~y~~~~A~~~~~~m~~~~-~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~  114 (250)
                      ..|..+.+..-+.++.... ..|+  ...|..+-..|.+.|++++|...|++..+.. +.+...|+.+-..+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            3455888888888887642 2222  4568888889999999999999999877652 2356889999999999999999


Q ss_pred             HHHHHHHHhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCC-chhhhc----chhHHHHHHHHHhcc
Q 037164          115 MDKIINMTESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRN-SSNAFE----LKDQLYRIWKHYGQT  179 (250)
Q Consensus       115 a~~~~~~m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~  179 (250)
                      |...|++..+.   .|+ ...+..+         .++|.+.+++..... |+.. .. .+.    ..++..++.+.+...
T Consensus       117 A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        117 AYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRA-LWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH-HHHHHHHccCCHHHHHHHHHHH
Confidence            99999998753   333 3333333         888988888877543 3322 11 111    334455666655432


Q ss_pred             CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC-----CCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          180 RK-VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLP-----YDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       180 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      .. .+...|.. -......|+...+ ..++.+... ...     .....|..+-..+.+.|++++|...|++..+..
T Consensus       192 ~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        192 YEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            22 11222221 1222335555544 355555421 111     123578899999999999999999999987653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.25  E-value=9.8e-06  Score=71.13  Aligned_cols=216  Identities=8%  Similarity=-0.024  Sum_probs=123.7

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh--hccccccc-----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh--
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG-----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK--   79 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~-----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~--   79 (250)
                      +++.-||..|+++.|- +|.-|..+  +.+...++     -..|    +.|... -.|.+.||+.|..+|.+.||...  
T Consensus        30 sLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A----nd~Enp-kep~aDtyt~Ll~ayr~hGDli~fe  103 (1088)
T KOG4318|consen   30 SLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA----NDAENP-KEPLADTYTNLLKAYRIHGDLILFE  103 (1088)
T ss_pred             HHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc----ccccCC-CCCchhHHHHHHHHHHhccchHHHH
Confidence            8899999999999999 88887766  33334444     0111    112111 16888999999999999999765  


Q ss_pred             -HHHHHHHH----HhcCCC-CCchh-------------HhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164           80 -IDALMLEM----EEKSIN-GDQFT-------------LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--  138 (250)
Q Consensus        80 -a~~~~~~m----~~~gi~-p~~~t-------------y~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--  138 (250)
                       +.+.+...    ..+|+- |....             -.++|.-..-.|-++.+.+++..+--..-..|........  
T Consensus       104 ~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~  183 (1088)
T KOG4318|consen  104 VVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV  183 (1088)
T ss_pred             HHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhcc
Confidence             33322221    122321 11111             1222333333444555555554442211122222211111  


Q ss_pred             ----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc----CCCChhhHHHHHHHHHhcCCHHHH
Q 037164          139 ----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT----RKVFNKGYMTMMGLLLKLDDVKGA  203 (250)
Q Consensus       139 ----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A  203 (250)
                          +++-..+.+....  .+++.   +|.       ..|+++-+.+++.++    .+.+.+-|..+|-+   .++...+
T Consensus       184 ~ntpvekLl~~cksl~e--~~~s~---~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~  255 (1088)
T KOG4318|consen  184 DNTPVEKLLNMCKSLVE--APTSE---TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVF  255 (1088)
T ss_pred             CCchHHHHHHHHHHhhc--CCChH---HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHH
Confidence                3333322222222  23333   554       445555555555444    33556667777766   8899999


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164          204 EKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA  238 (250)
Q Consensus       204 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  238 (250)
                      +.++..|...|+.|+..|+.--+..+..+|....+
T Consensus       256 e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~  290 (1088)
T KOG4318|consen  256 EFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG  290 (1088)
T ss_pred             HHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence            99999999999999999999888888886664433

>TIGR00540 hemY_coli hemY protein

Probab=98.23  E-value=0.00097  Score=56.09  Aligned_cols=223  Identities=13%  Similarity=-0.013  Sum_probs=152.9

Q ss_pred             hccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHH--HHHHHHHHHhhcCChhhHH
Q 037164           16 EVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTI--YCYIMMILNYLTGNREKID   81 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~--~y~~li~~~~~~g~~~~a~   81 (250)
                      ..|+++.|++.+....+..|++..+-            .+.|..++.+..+..  |+..  .--.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence            36999999999998877766655443            799999999987653  5543  3334577888999999999


Q ss_pred             HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--------HHHH-----HHHHHH
Q 037164           82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--------LYMA-----MTMLKK  148 (250)
Q Consensus        82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------~~~a-----~~~~~~  148 (250)
                      +.++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+. +..+ ...+..+        +..+     .+.+..
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999998874 336677888899999999999999999999887 5543 2223211        2222     224444


Q ss_pred             HHhhhhc---cCCch-hhh----cchhHHHHHHHHHhccCC--CChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          149 SEGLIAT---KRNSS-NAF----ELKDQLYRIWKHYGQTRK--VFNKG---YMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       149 ~~~~~~~---~~~~~-~~~----~~~~~~~~~~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      +......   ++... ..+    ...++.+++.+.+.+...  |+...   ...........++.+.+.+.++...+. .
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~  329 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V  329 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence            4422211   12211 011    177777788777766543  44432   122223334457888999999887743 3


Q ss_pred             CCCC--cchHHHHHHHHhcCChhHHHHHHHH
Q 037164          216 PYDF--GLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       216 ~~~~--~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      +-|.  ....++-+.|.+.|++++|.+.|+.
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3344  6777999999999999999999994

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.23  E-value=0.0004  Score=59.58  Aligned_cols=235  Identities=15%  Similarity=0.091  Sum_probs=138.6

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc---
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT---   74 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~---   74 (250)
                      ..+++...|++++|.+.+++......+...+.            .++|..+|..+.+.+ +.|..-|..|..+....   
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence            34678889999999999988766655555444            789999999998875 33444445555555222   


Q ss_pred             --CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh-HHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHH
Q 037164           75 --GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH-GMDKIINMTESNPQMVLDFNLLAVL------LYMAMTM  145 (250)
Q Consensus        75 --g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~-~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~  145 (250)
                        .+.+...++++++.+.-  |......-+.-.+.....+. .+...+..+... |+++-....-.+      ..-..++
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHHHHHHHH
Confidence              25677788888876652  44444333332232222332 345555666666 876544444444      1122222


Q ss_pred             HHHHHhhh-----h-------ccCCchhhhc---------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHH
Q 037164          146 LKKSEGLI-----A-------TKRNSSNAFE---------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVK  201 (250)
Q Consensus       146 ~~~~~~~~-----~-------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~  201 (250)
                      +.......     .       ...+....|.         ..++.+++.+.+.....  |+. ..|..--..|-+.|+++
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~  245 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK  245 (517)
T ss_pred             HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence            22222111     0       0111000111         66667777777665433  443 66666667777888888


Q ss_pred             HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      +|.+.++..+.... -|-.+=+-....+.++|++++|..++....+.+
T Consensus       246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            88888887775433 356666667777788888888888877665554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.22  E-value=7.1e-06  Score=60.97  Aligned_cols=70  Identities=14%  Similarity=0.107  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----------------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----------------NREKIDALMLEMEEKSINGDQFTLGIRPSA  105 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----------------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~  105 (250)
                      ++=....+..|.+.|+.-|..+|+.|+..+=+..                +-+-|++++++|+.+|+.||..|+..|++.
T Consensus        68 VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i  147 (228)
T PF06239_consen   68 VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI  147 (228)
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            4445566788888899999999999998886521                336789999999999999999999999999


Q ss_pred             HHhcCC
Q 037164          106 YAAASD  111 (250)
Q Consensus       106 ~~~~~~  111 (250)
                      |++.+.
T Consensus       148 FG~~s~  153 (228)
T PF06239_consen  148 FGRKSH  153 (228)
T ss_pred             hccccH
Confidence            987765

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.18  E-value=0.0032  Score=55.94  Aligned_cols=65  Identities=15%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +...|.-+-.+|...|+++.|..+|..+.+...--+...|--+-++|-..|..+.|.+.+++.+.
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34566677788888899999999998888665555677888888888888888888888887654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.16  E-value=0.00011  Score=63.46  Aligned_cols=191  Identities=13%  Similarity=0.061  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ...|..+|++.         ..|--+|.+|+..|+..+|..+..+-.+  -+||..-|..+.+......-+++|.++.+.
T Consensus       414 tksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~  482 (777)
T KOG1128|consen  414 TKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNY  482 (777)
T ss_pred             HHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence            44555555544         4677888999999999999999887666  468888999998888888889999999887


Q ss_pred             HhhCCCCCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC--CCCh-hhHHHH
Q 037164          122 TESNPQMVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR--KVFN-KGYMTM  190 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~-~~~~~l  190 (250)
                      .......-.....++.- +.++.+.|+...........   +|-       +.++.+.+.+.|..-.  .|+. ..||++
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl  559 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL  559 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence            64320111011111111 55566666555433222222   322       6666666666665432  2665 899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      =.+|.+.|+..+|...+++..+.. .-+..+|..-+-...+.|.+++|.+.+.++..
T Consensus       560 s~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  560 STAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            999999999999999999988555 66788899999999999999999999988865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00013  Score=60.45  Aligned_cols=191  Identities=9%  Similarity=0.029  Sum_probs=118.5

Q ss_pred             HhhhccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      +|....+-++..+.|+..... +.++.+|.           .++|..=|++..+.+ +-++..|--+-.+..|.++++++
T Consensus       369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~  447 (606)
T KOG0547|consen  369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAES  447 (606)
T ss_pred             HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            556666667777777766555 44556666           677777777776653 33456666666666777778888


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc--HHHHHHH--HHHHHHHHHHHHhhhhcc
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD--FNLLAVL--LYMAMTMLKKSEGLIATK  156 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~~~~l--~~~a~~~~~~~~~~~~~~  156 (250)
                      +..|++.+.+ ++--+..||..-..+...++++.|.+-|+....   ++|+  .+..+..  +.+|.-+++         
T Consensus       448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~q---------  514 (606)
T KOG0547|consen  448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQ---------  514 (606)
T ss_pred             HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhc---------
Confidence            8888877765 655667777777777788888888888776543   2222  1111111  444443333         


Q ss_pred             CCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 037164          157 RNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHC  230 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  230 (250)
                              ..+++..+.+++.....   .....|..|-..-..+|++++|+++|++-...     ..|-.-++++|.
T Consensus       515 --------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~s  578 (606)
T KOG0547|consen  515 --------WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAYS  578 (606)
T ss_pred             --------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHHH
Confidence                    12455566666655544   33466777777788888888888888875421     334444555543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.12  E-value=1.8e-05  Score=65.67  Aligned_cols=96  Identities=9%  Similarity=0.043  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHHCC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMG--FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      ++.+..++.+.+...  ...-..|..++|..|...|..+.++++++.=...|+-||.+|+|.||+.+.+.|++..|.++.
T Consensus        82 ~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~  161 (429)
T PF10037_consen   82 LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA  161 (429)
T ss_pred             HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence            788999999987762  222335667999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCccHHHHHHH
Q 037164          120 NMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l  138 (250)
                      ..|... +...+..|+...
T Consensus       162 ~~~~lQ-e~~~~~~t~~L~  179 (429)
T PF10037_consen  162 TEMMLQ-EEFDNPSTQALA  179 (429)
T ss_pred             HHHHHh-hccCCchHHHHH
Confidence            998776 666666666544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.10  E-value=0.0023  Score=49.43  Aligned_cols=177  Identities=12%  Similarity=-0.050  Sum_probs=103.9

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc----hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH-HH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ----FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF-NL  134 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~----~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~  134 (250)
                      ....+-.+...+.+.|+++.|...|++....  .|+.    ..+..+..++.+.|++++|...++++.....-.|.. ..
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            3556677777788888888888888876553  2322    355666778888888888888888875431111221 11


Q ss_pred             HHHH-----------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 037164          135 LAVL-----------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL  197 (250)
Q Consensus       135 ~~~l-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  197 (250)
                      +..+                 .++|.+.+++..... |....  .       .++...+.............+-..+.+.
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~--~-------~~a~~~~~~~~~~~~~~~~~~a~~~~~~  179 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEY--A-------PDAKKRMDYLRNRLAGKELYVARFYLKR  179 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChh--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111                 223333333333221 11110  0       0000000000000000112445678899


Q ss_pred             CCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          198 DDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       198 g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      |+.++|...++.......  +.....+..+..++.+.|++++|..+++.+..+
T Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999875421  224568899999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.08  E-value=0.004  Score=51.19  Aligned_cols=234  Identities=9%  Similarity=-0.016  Sum_probs=139.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc-c------cc--------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL-F------FG--------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~------y~--------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      .+...|++++|.++++......|+.. .      +.        ...+.+.+.. .....+........+...+...|++
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            45567999999999998776644432 1      11        3344444443 1111222334445666788999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH--HHHHH---------HHHHHHHH
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN--LLAVL---------LYMAMTML  146 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~~~~l---------~~~a~~~~  146 (250)
                      ++|.+.+++..+.. +.+...+..+-..+...|++++|...+++........|+..  .|..+         .++|..++
T Consensus       131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999887753 33566778888999999999999999998765412223332  22222         88899999


Q ss_pred             HHHHhhhh-ccCCch--hh-hc-------chhHHHHHHHHHhccC----CCChhhH--HHHHHHHHhcCCHHHHHHHHHH
Q 037164          147 KKSEGLIA-TKRNSS--NA-FE-------LKDQLYRIWKHYGQTR----KVFNKGY--MTMMGLLLKLDDVKGAEKTLRN  209 (250)
Q Consensus       147 ~~~~~~~~-~~~~~~--~~-~~-------~~~~~~~~~~~~~~~~----~~~~~~~--~~li~~~~~~g~~~~A~~~~~~  209 (250)
                      ++...... ......  +. ..       .......-|+.+....    ......+  .....++...|+.+.|..+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~  289 (355)
T cd05804         210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA  289 (355)
T ss_pred             HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            88752111 011100  00 00       1122222232221111    1111222  2566788899999999999999


Q ss_pred             HHhCCCC------C--CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          210 WTSKNLP------Y--DFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       210 m~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +......      .  .+......-.++...|+.+.|.+++......
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8753322      1  2222333334466899999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.0011  Score=52.51  Aligned_cols=177  Identities=11%  Similarity=-0.052  Sum_probs=88.6

Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------
Q 037164           65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------  138 (250)
Q Consensus        65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------  138 (250)
                      +-+-.+|.+.|-+.+|.+.|+.-...  .|-+.||-.|-+.|.+..+...|+.++.+-...  . |.-+||-.-      
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--f-P~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--F-PFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--C-CchhhhhhhhHHHHH
Confidence            44555666666666666666543322  344555555666666666666666666655432  2 222333221      


Q ss_pred             ----HHHHHHHHHHHHhhhhccCCch----hhhc---chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164          139 ----LYMAMTMLKKSEGLIATKRNSS----NAFE---LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTL  207 (250)
Q Consensus       139 ----~~~a~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  207 (250)
                          .++|.+++++..+....+....    +.|-   +++-.-+.+..+-+++.-+...|+.+--+|.-.+++|-+.--|
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence                4445555554442221111100    0111   4444444444444455555555666555555566666655555


Q ss_pred             HHHHhCCCCC------------------------------------CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          208 RNWTSKNLPY------------------------------------DFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       208 ~~m~~~~~~~------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      +...+.-..|                                    +...+|.|--.-.+.|++++|..+++...
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            5544332222                                    34445555555566677777776666543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=4.6e-05  Score=60.68  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT   74 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~   74 (250)
                      ..+.+|.+.+|++.|.+.|+.+.+...+.....              .++|..+|+++.+. +.+++.+.|.+..++...
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence            344555555666666665555554422222111              45555555555443 445555555555555555


Q ss_pred             CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCCh-hHHHHHHHHHh
Q 037164           75 GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDI-HGMDKIINMTE  123 (250)
Q Consensus        75 g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~-~~a~~~~~~m~  123 (250)
                      |++++|.+++.+..+.+ +-|..|...+|.+....|+. +.+.+.+.+++
T Consensus       215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            55555555555543322 12334444455555555544 44445555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.00  E-value=7.1e-05  Score=49.70  Aligned_cols=73  Identities=8%  Similarity=0.008  Sum_probs=46.4

Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHHhcCC-CCCchhHhhhHHHHHhcC--------ChhHHHHHHHHHhhCCCCCccHHHH
Q 037164           65 YIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAAS--------DIHGMDKIINMTESNPQMVLDFNLL  135 (250)
Q Consensus        65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~~~ty~~li~~~~~~~--------~~~~a~~~~~~m~~~~g~~~~~~~~  135 (250)
                      ...|.-+...+++.....+++.++++|+ .|++.+|+.++.+-++-.        .+-..+.+|+.|... +++|+..||
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence            4445555555777777777777777777 677777777776655432        133456667777666 677777777


Q ss_pred             HHH
Q 037164          136 AVL  138 (250)
Q Consensus       136 ~~l  138 (250)
                      +.+
T Consensus       108 niv  110 (120)
T PF08579_consen  108 NIV  110 (120)
T ss_pred             HHH
Confidence            666

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.97  E-value=0.0018  Score=57.98  Aligned_cols=231  Identities=15%  Similarity=0.106  Sum_probs=151.7

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc-ccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      +++.++|+.+.|...|....+..|... ++-              ..++..++...-..+ .-|++.-|.|-+.|.-.|+
T Consensus       207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d  285 (1018)
T KOG2002|consen  207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD  285 (1018)
T ss_pred             hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence            456688888888888888777644222 111              677777777764442 4567788999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----------HHHHH
Q 037164           77 REKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-----------LYMAM  143 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----------~~~a~  143 (250)
                      +..|..+...+...-..-.  ...|--+-.+|-..|++++|.+.|-+..+   ..||.+++...           ++.+.
T Consensus       286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~  362 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESK  362 (1018)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHH
Confidence            9999999998876542111  22355577899999999999999887753   34444444443           67777


Q ss_pred             HHHHHHHhhhhccCCch-----hhhc----chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH--
Q 037164          144 TMLKKSEGLIATKRNSS-----NAFE----LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRN--  209 (250)
Q Consensus       144 ~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~--  209 (250)
                      ..|....... |+....     -.|.    .....+++.+.+.....   .|...|-.+ .-+...++...+...|+.  
T Consensus       363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l-aql~e~~d~~~sL~~~~~A~  440 (1018)
T KOG2002|consen  363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL-AQLLEQTDPWASLDAYGNAL  440 (1018)
T ss_pred             HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH-HHHHHhcChHHHHHHHHHHH
Confidence            7777665333 122110     0111    23344666666655433   233444333 344556666666777765  


Q ss_pred             --HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          210 --WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       210 --m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                        +.+++..+-+...|.+-..+...|++++|...|+.....
T Consensus       441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence              345666677889999999999999999999999987653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=0.0035  Score=52.17  Aligned_cols=110  Identities=5%  Similarity=0.038  Sum_probs=84.4

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcccc--ccc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQCL--FFG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      .++=-|++.+..|..+++......|...  .|.          +..|.++|++-.+  ..|+...|++.|+.=.+-..++
T Consensus       114 ae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeie  191 (677)
T KOG1915|consen  114 AEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIE  191 (677)
T ss_pred             HHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHH
Confidence            4455678888889988887766655443  232          7889999988776  4799999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .|..+++...-  +.|++.+|--....=-+.|....|.++|.....
T Consensus       192 raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie  235 (677)
T KOG1915|consen  192 RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE  235 (677)
T ss_pred             HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            99999998664  348888887777766777777777777766543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.95  E-value=0.00016  Score=48.11  Aligned_cols=61  Identities=8%  Similarity=-0.013  Sum_probs=53.4

Q ss_pred             hhHHHHHHHHHHHCCC-CccHHHHHHHHHHHhhcCC--------hhhHHHHHHHHHhcCCCCCchhHhhh
Q 037164           42 VGKAEMVVQEMKDMGF-ARRTIYCYIMMILNYLTGN--------REKIDALMLEMEEKSINGDQFTLGIR  102 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~--------~~~a~~~~~~m~~~gi~p~~~ty~~l  102 (250)
                      ...-..+|+.+++.|+ .|++.+||.++.+-++...        .-..+.+++.|..++++|+..||+++
T Consensus        41 ~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   41 YNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            7788889999999999 8999999999999877542        34678999999999999999999875

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.91  E-value=0.0021  Score=59.75  Aligned_cols=201  Identities=10%  Similarity=0.050  Sum_probs=135.1

Q ss_pred             hhHHHHHHHHHHHC-CCCc---cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDM-GFAR---RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~-~~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~  117 (250)
                      +++|.+++++.+.. +++-   -...|.++++.---.|.-+...++|++..+.  ---...|..|...|.+...++.|.+
T Consensus      1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred             hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHH
Confidence            89999999998764 2211   1357888888888888888999999987665  2234678889999999999999999


Q ss_pred             HHHHHhhCCC-CCccHHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHH---HHHHHhccC
Q 037164          118 IINMTESNPQ-MVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYR---IWKHYGQTR  180 (250)
Q Consensus       118 ~~~~m~~~~g-~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~  180 (250)
                      +++.|.+..| ..--|..|...      .+.|..++++...-.. ...+.....       +.++.+|   +|+-.-...
T Consensus      1552 ll~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1552 LLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence            9999977645 22234444444      5667777777764442 221110111       6677777   444333334


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          181 KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF--GLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       181 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      +.-...|+..|+.-.++|+.+.+.++|++....++.|.-  ..|.-.++.=-..|+-+.++.+=.++
T Consensus      1631 PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1631 PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            445678999999999999999999999999888887642  23555555545556655555444333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.89  E-value=0.013  Score=50.74  Aligned_cols=197  Identities=16%  Similarity=0.152  Sum_probs=136.3

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .+-|..+|...++. ++-+...|......=-..|..+....+|++.... ++-....|-...+.+..+||+..|..++.+
T Consensus       532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~  609 (913)
T KOG0495|consen  532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQ  609 (913)
T ss_pred             HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            44445555555443 3445556666666666667777777777776665 555667777777888999999999999998


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~  183 (250)
                      ....  .+.+..+|-+.         ++.|..+|.+... ..++..   .|.       -.+.++++.+++++...  |+
T Consensus       610 af~~--~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeR---v~mKs~~~er~ld~~eeA~rllEe~lk~fp~  683 (913)
T KOG0495|consen  610 AFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTER---VWMKSANLERYLDNVEEALRLLEEALKSFPD  683 (913)
T ss_pred             HHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcch---hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            8654  22344555444         8899999988764 223333   333       66677777777755433  44


Q ss_pred             h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          184 N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       184 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      - ..|..+-..+-..++++.|.+-|..-. +.++..+..|-.|...=-+.|++..|..++++..-
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            4 566666678888889999998887654 34566677888888888889999999999987653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0046  Score=46.66  Aligned_cols=156  Identities=13%  Similarity=0.006  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc----HHHHHH
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD----FNLLAV  137 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~~~~  137 (250)
                      +..-|--+|.+.|+...|..-++...++  .| +..+|..+-..|-+.|+.+.|.+-|++..+.   .|+    ...|..
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhH
Confidence            3455556677777777777777766554  23 3356666667777777777777777765432   111    111111


Q ss_pred             H------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          138 L------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       138 l------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      .      .++|...|++......-.                         --..+|..+.-+..+.|+.+.|+..|++-.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~-------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL  166 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYG-------------------------EPSDTLENLGLCALKAGQFDQAEEYLKRAL  166 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCC-------------------------CcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence            1      333333333332111101                         112456666666667777777777777665


Q ss_pred             hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      .. .+....+...+.....+.|++-.|..++++....|
T Consensus       167 ~~-dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~  203 (250)
T COG3063         167 EL-DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG  203 (250)
T ss_pred             Hh-CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence            33 22234555666666677777777777776665554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.87  E-value=0.0016  Score=55.57  Aligned_cols=186  Identities=16%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----CC-CCCchhH-hhhHHHHHhcCChhHHHHHHHHHhhC----CC-C
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEK-----SI-NGDQFTL-GIRPSAYAAASDIHGMDKIINMTESN----PQ-M  128 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----gi-~p~~~ty-~~li~~~~~~~~~~~a~~~~~~m~~~----~g-~  128 (250)
                      ..|+..|-..|...|++++|..+++.-.+.     |. .|.+.+. +.+-..|...+++++|..+|+++...    .| .
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666778888888888888888765433     21 2333332 23456777778888888887776432    11 1


Q ss_pred             Ccc-HHHHHHH----------------HHHHHHHHHHHHhhhhccCCc-----hhhhcchhHHHHHHH-------HHhcc
Q 037164          129 VLD-FNLLAVL----------------LYMAMTMLKKSEGLIATKRNS-----SNAFELKDQLYRIWK-------HYGQT  179 (250)
Q Consensus       129 ~~~-~~~~~~l----------------~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~  179 (250)
                      .|. ..+++.|                .+.|.++++.......+....     ..++...++.+.+..       ++...
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            122 2444443                344444444411111111100     001113333333333       33322


Q ss_pred             CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          180 RK---VF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN----L--PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       180 ~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      +.   +. ..+++.|-..|.+.|++++|++++++....-    .  .+ .-...+-|-.+|.+.+.+++|.++|.+..
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~  436 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK  436 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            22   22 3789999999999999999999999976421    2  12 24457788889999999999999998764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.00051  Score=54.75  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=100.0

Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK  148 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~  148 (250)
                      ..+...|++++|++++..    +  .+.......+..|.+.++++.|.+.++.|.+   +..|.......    ...+.-
T Consensus       110 ~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa----~awv~l  176 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLA----EAWVNL  176 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHH----HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHH----HHHHHH
Confidence            456778888888888863    2  3556666778888899999999999988874   34454432211    111111


Q ss_pred             HHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 037164          149 SEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA  228 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  228 (250)
                      ...+     .      +.++...+++.+.+..+++..+.|.+..+....|++++|++++.+.... .+-|..+...++-.
T Consensus       177 ~~g~-----e------~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~  244 (290)
T PF04733_consen  177 ATGG-----E------KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVC  244 (290)
T ss_dssp             HHTT-----T------CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHH
T ss_pred             HhCc-----h------hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHH
Confidence            0011     0      2344445555565556677788889999999999999999999997643 34466677778888


Q ss_pred             HHhcCCh-hHHHHHHHHHHh
Q 037164          229 HCKNGLL-EKAQSLINHAET  247 (250)
Q Consensus       229 ~~~~g~~-~~a~~~~~~m~~  247 (250)
                      ....|+. +.+.+++..+..
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHhCCChhHHHHHHHHHHH
Confidence            8888887 667788877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0063  Score=51.59  Aligned_cols=203  Identities=11%  Similarity=-0.022  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +.+..++++...+. .++....+..=|.++...|+..+-..+=..|.+. .+-...+|-++---|.-.|..++|.+.|.+
T Consensus       260 f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK  337 (611)
T KOG1173|consen  260 FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK  337 (611)
T ss_pred             HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence            77788888888776 5778888888899999999999888888887775 666789999999888889999999999998


Q ss_pred             Hhh-CCCCCccHHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-----chhHHHHHHHHHhc---cCCCChhh
Q 037164          122 TES-NPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-----LKDQLYRIWKHYGQ---TRKVFNKG  186 (250)
Q Consensus       122 m~~-~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~  186 (250)
                      ... .+..-|.|.-|...      .+.|+..+...-+...-.-.-. .|.     ..+....+.+.+.+   ..+-|+..
T Consensus       338 at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv  416 (611)
T KOG1173|consen  338 ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV  416 (611)
T ss_pred             HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence            632 23677888888877      6777777766654332111101 222     34445555555544   34556677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          187 YMTMMGLLLKLDDVKGAEKTLRNWTSK--NLPY----DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       187 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+-+--.....+.+.+|..+|+.....  .+.+    -..+++-|-.+|.+.+.+++|...+++.+.
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            777766677788999999999986621  1111    234578888999999999999999998764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.75  E-value=0.0015  Score=46.37  Aligned_cols=92  Identities=2%  Similarity=-0.234  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..... +.+...|..+-.++.+.|++++|...|+..... -+.+...+..+-.++.+.|++++|...|+.
T Consensus        40 ~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~  117 (144)
T PRK15359         40 YSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGEPGLAREAFQT  117 (144)
T ss_pred             HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            677888888877663 457788888889999999999999999987764 234778888888899999999999999998


Q ss_pred             HhhCCCCCccHHHHHHH
Q 037164          122 TESNPQMVLDFNLLAVL  138 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l  138 (250)
                      ...   ..|+...+...
T Consensus       118 Al~---~~p~~~~~~~~  131 (144)
T PRK15359        118 AIK---MSYADASWSEI  131 (144)
T ss_pred             HHH---hCCCChHHHHH
Confidence            764   34444433333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00051  Score=53.71  Aligned_cols=181  Identities=9%  Similarity=-0.059  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--  138 (250)
                      .-|++.+.-..+..+++.|.+++.-..++  .| +....+.|-.+|....++..|..+++++..   ..|...-|..-  
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~A   85 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQA   85 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH
Confidence            34666676677777788888877755544  23 556666777788888888888888887753   23433332222  


Q ss_pred             --------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHH
Q 037164          139 --------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLDDVKGAE  204 (250)
Q Consensus       139 --------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~  204 (250)
                              ...|..++..|.......+...     ..| ..+++--.-.++++... -+..+-+..-....+.|+.+.|.
T Consensus        86 QSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence                    5555666555543211111100     000 22222222233344432 23344444445567899999999


Q ss_pred             HHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          205 KTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       205 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      +-|+....- |..| ...||.-+ +..+.|+.+.|.++..+++++|+
T Consensus       165 qkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  165 QKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGI  209 (459)
T ss_pred             HHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence            999998765 4544 56777666 45567899999999999999985

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.74  E-value=0.004  Score=54.24  Aligned_cols=175  Identities=11%  Similarity=-0.039  Sum_probs=132.6

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +|--..=..+-..+.+.|-...|..+|+.         ...|.-+|.+|+..|+..+|..+..+-.+   -+||...|..
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~  462 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCL  462 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHH
Confidence            33333345666778888889999999984         56688899999999999999999887764   4688888888


Q ss_pred             H---------HHHHHHHHHHHHhhhhcc-CCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHH
Q 037164          138 L---------LYMAMTMLKKSEGLIATK-RNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAE  204 (250)
Q Consensus       138 l---------~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~  204 (250)
                      +         +++|.++.+..-.+-... .. . .| ..+++.++.+.++..   .+....+|-.+-.+..+.+++..|.
T Consensus       463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~-~-~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISARAQRSLAL-L-IL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHHHHHhhcc-c-cc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            8         899999988766331111 11 0 22 345566666665554   3345588888888889999999999


Q ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          205 KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       205 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +-|.... .+-+-+...||.+-.+|.+.|+-.+|...+.+..+.
T Consensus       540 ~aF~rcv-tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  540 KAFHRCV-TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHh-hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            9999887 445556788999999999999999999999988763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.72  E-value=0.0096  Score=48.92  Aligned_cols=172  Identities=12%  Similarity=0.078  Sum_probs=86.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhc-cccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLR-QCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----   73 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----   73 (250)
                      .+...|+.+.+.+.+.......+ +...+.              .++|.+++++..+. .+.|...++. ...+..    
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~-~~~~~~~~~~   92 (355)
T cd05804          15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKL-HLGAFGLGDF   92 (355)
T ss_pred             HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHH-hHHHHHhccc
Confidence            34445667776666666555422 222111              77788888877765 2334444442 222322    


Q ss_pred             cCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhh
Q 037164           74 TGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGL  152 (250)
Q Consensus        74 ~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~  152 (250)
                      .+..+.+.+.+..  .....|+. .....+...+...|++++|.+.+++....  .+.+...+..+ .            
T Consensus        93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~l-a------------  155 (355)
T cd05804          93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAV-A------------  155 (355)
T ss_pred             ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHH-H------------
Confidence            3444444444443  11222332 23344556777788888888888877653  11122222111 0            


Q ss_pred             hhccCCchhhhcchhHHHHHHHHHhccCC-----CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          153 IATKRNSSNAFELKDQLYRIWKHYGQTRK-----VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                             . +|...++.+++...+.....     ++  ...|..+...+...|+.++|..++++..
T Consensus       156 -------~-i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         156 -------H-VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             -------H-HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                   0 11122222333333222111     12  2345567777888888888888888875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.71  E-value=0.00053  Score=56.72  Aligned_cols=114  Identities=9%  Similarity=-0.038  Sum_probs=92.2

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc---------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      .++..+...++++.|..+|+++.+..|.....-         -.+|.+++++..+. .+-+....+.-...+.+.++++.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence            677788888999999999999988755533221         67888999888865 34466667777777899999999


Q ss_pred             HHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           80 IDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      |+++.++..+  +.|+. .+|..|..+|.+.|+++.|+-.++.+-..
T Consensus       253 AL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  253 ALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            9999997766  46666 59999999999999999999999987543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.70  E-value=0.00048  Score=47.58  Aligned_cols=79  Identities=9%  Similarity=0.043  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHH---------------hcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEME---------------EKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~---------------~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      |..++..+|.++++.|+.+....+++..=               ...+.|+..+..+++.+|+..+++..|.++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            56789999999999999999999998641               123567888899999999999999999999999987


Q ss_pred             CCCCCccHHHHHHH
Q 037164          125 NPQMVLDFNLLAVL  138 (250)
Q Consensus       125 ~~g~~~~~~~~~~l  138 (250)
                      ..+++.+..+|..+
T Consensus        81 ~Y~I~i~~~~W~~L   94 (126)
T PF12921_consen   81 KYPIPIPKEFWRRL   94 (126)
T ss_pred             HcCCCCCHHHHHHH
Confidence            77899888888555

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.67  E-value=0.019  Score=46.09  Aligned_cols=223  Identities=13%  Similarity=-0.005  Sum_probs=129.7

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc---------------------------hhHHHHHHHHHHHCCCCccHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------------------------VGKAEMVVQEMKDMGFARRTIYC   64 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------------------------~~~A~~~~~~m~~~~~~p~~~~y   64 (250)
                      +.+-|.|.+++|+.=|+.+....|+..+-.                           ...|+.....+++. .+.|+..|
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~  192 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR  192 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence            467789999999999998877644332222                           44555555556554 35666777


Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---HHH
Q 037164           65 YIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---LYM  141 (250)
Q Consensus        65 ~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---~~~  141 (250)
                      -.-..+|...|++..|..=++...+. -..|..+.--+-..+...|+.+..+..+++..   .+.||...+-..   +.+
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHH
Confidence            77777788888877776655544332 12244555555667777788777777777765   456665544444   444


Q ss_pred             HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164          142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGY---MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD  218 (250)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  218 (250)
                      ..+.+..|+..+....+       ...++.-...++..+......|   ..+=.++...+++.+|++.-.+... --+.|
T Consensus       269 v~K~les~e~~ie~~~~-------t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-~d~~d  340 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHW-------TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-IDPDD  340 (504)
T ss_pred             HHHHHHHHHHHHhhhhH-------HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-cCchH
Confidence            44445555443322221       1112222223333322112222   3344566777788888877777653 12233


Q ss_pred             CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          219 FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       219 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +.++--=..+|.-.-.++.|..-++...+
T Consensus       341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  341 VQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            66666666677777777777777766654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.012  Score=47.38  Aligned_cols=56  Identities=13%  Similarity=0.036  Sum_probs=37.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      -.+++-.|...+|+++|-......++.+..-...|.++|.+++.++.|+.++-++.
T Consensus       400 AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~  455 (557)
T KOG3785|consen  400 AQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN  455 (557)
T ss_pred             HHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence            34666667777888887766554455444445566677888888888888776543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.65  E-value=0.0051  Score=51.20  Aligned_cols=131  Identities=8%  Similarity=-0.037  Sum_probs=91.2

Q ss_pred             hhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCcc-HHHHHHHHHHHhhcCChhhHH
Q 037164           15 FEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARR-TIYCYIMMILNYLTGNREKID   81 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~-~~~y~~li~~~~~~g~~~~a~   81 (250)
                      -..|.+++|++.+..+....|+-..|.            ..+|.+.++++...  .|+ ....-.+-.+|.+.|++.+|.
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence            346788888888888777766666555            78888888888775  344 556666777788888888888


Q ss_pred             HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 037164           82 ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRN  158 (250)
Q Consensus        82 ~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~  158 (250)
                      ++++.-..+ .+-|+..|..|-.+|...|+..++..-..+.....|-          ++.|...+....+....+..
T Consensus       395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~----------~~~A~~~l~~A~~~~~~~~~  460 (484)
T COG4783         395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR----------LEQAIIFLMRASQQVKLGFP  460 (484)
T ss_pred             HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhccCCcH
Confidence            888876655 5567888888888888888888877777665433233          44555555555554444444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.61  E-value=0.021  Score=51.04  Aligned_cols=233  Identities=9%  Similarity=-0.032  Sum_probs=141.8

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc--ccc----------hhHHHHHHHHHHHCCCCccHHHHH----HHHHHHhhcC
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL--FFG----------VGKAEMVVQEMKDMGFARRTIYCY----IMMILNYLTG   75 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~----------~~~A~~~~~~m~~~~~~p~~~~y~----~li~~~~~~g   75 (250)
                      +...+.|.+++|.-.|.+..+..|...  .|.          ...|.+-|.++.+..-+.|..-+-    ..+..|...+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            344456777777777777666533322  122          667777788877753222222233    3344556666


Q ss_pred             ChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------------
Q 037164           76 NREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------------  138 (250)
Q Consensus        76 ~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------------  138 (250)
                      +-+.|.+.+....+ .+=.-+...+++++..|.+...++.|.+.+..+... ..++|..-+.+-                
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~  373 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKE  373 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCC
Confidence            66777777776554 233346677888888888888888888888777663 333333322111                


Q ss_pred             -------------------HHHHHHHHHHHHhhhh-cc-CCch-----hhhcchhHHHHHHHHHhccCC----CChhhHH
Q 037164          139 -------------------LYMAMTMLKKSEGLIA-TK-RNSS-----NAFELKDQLYRIWKHYGQTRK----VFNKGYM  188 (250)
Q Consensus       139 -------------------~~~a~~~~~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  188 (250)
                                         .+...-++........ +. ....     ..|.+.+....+.+++.....    -+...|-
T Consensus       374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence                               1111111111111111 11 1100     011166777777777765533    3346788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .+-.+|-..|..+.|...|++.... -+-+...-.+|-..+-+.|+.++|.+.+..+.
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            8999999999999999999998743 34456677788888999999999999988754

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.61  E-value=0.00044  Score=57.60  Aligned_cols=66  Identities=15%  Similarity=0.053  Sum_probs=60.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      ..|..++|..|.+.|..+.|..+++.=...|+.||..++|.|++.+.+.|++..|.++...|..++
T Consensus       103 ~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe  168 (429)
T PF10037_consen  103 PSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE  168 (429)
T ss_pred             CccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence            456679999999999999999999998889999999999999999999999999999999887654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.57  E-value=0.0029  Score=44.15  Aligned_cols=81  Identities=9%  Similarity=-0.043  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|.+.|++....+ +.+...+..+-.+|.+.|+++.|..+++.....+ +.+..++..+-.+|...|++++|.+.|+.
T Consensus        33 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        33 YDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDL  110 (135)
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            566666676666543 4466777788888888888888888888766553 33566777777888888888888888887


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       111 al~  113 (135)
T TIGR02552       111 AIE  113 (135)
T ss_pred             HHH
Confidence            764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.56  E-value=0.015  Score=43.69  Aligned_cols=143  Identities=8%  Similarity=0.005  Sum_probs=103.3

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM   84 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~   84 (250)
                      ..+-+|.+.|+++........+...   ...|+    .+++...+++..+.+ +.|...|..|-..|...|++++|...+
T Consensus        21 ~~~~~Y~~~g~~~~v~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~   96 (198)
T PRK10370         21 LCVGSYLLSPKWQAVRAEYQRLADP---LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY   96 (198)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHhCc---cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4456889999998876665333221   12333    788888888877764 678899999999999999999999999


Q ss_pred             HHHHhcCCCCCchhHhhhHHH-HHhcCC--hhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhh
Q 037164           85 LEMEEKSINGDQFTLGIRPSA-YAAASD--IHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGL  152 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~-~~~~~~--~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~  152 (250)
                      +...+.+ +.|...+..+-.+ +...|+  .++|.+++++..+.  -+-+...+..+         +++|...++++...
T Consensus        97 ~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370         97 RQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9777653 2366777777776 467777  59999999998764  22233333333         88888888888877


Q ss_pred             hhccCC
Q 037164          153 IATKRN  158 (250)
Q Consensus       153 ~~~~~~  158 (250)
                      ..|++.
T Consensus       174 ~~~~~~  179 (198)
T PRK10370        174 NSPRVN  179 (198)
T ss_pred             CCCCcc
Confidence            766665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.031  Score=45.95  Aligned_cols=213  Identities=14%  Similarity=-0.019  Sum_probs=125.3

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccc----cccc------------------------------------------h
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC----LFFG------------------------------------------V   42 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~----~~y~------------------------------------------~   42 (250)
                      ++-+.+...|+..+|...|+......|..    ..|.                                          .
T Consensus       237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~  316 (564)
T KOG1174|consen  237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF  316 (564)
T ss_pred             HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence            44456677788888888888766552222    1233                                          4


Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC-CCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN-GDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~-p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +.|+.+-++..+.+ +-++..|----.++...|+++.|.--|++-+.  +. -+..+|.-|+.+|...|.+.+|.-+-+.
T Consensus       317 ~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  317 ERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             HHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            45555555544432 11222232222445667777777777776544  33 3667788888888888877776555443


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcC
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLD  198 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g  198 (250)
                      ..+.  +.-+..+.        .++..   .+        .+..+..=+++-++++....  |+ ....+.+-+.+...|
T Consensus       394 ~~~~--~~~sA~~L--------tL~g~---~V--------~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg  452 (564)
T KOG1174|consen  394 TIRL--FQNSARSL--------TLFGT---LV--------LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG  452 (564)
T ss_pred             HHHH--hhcchhhh--------hhhcc---ee--------eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence            3221  11111111        11100   00        11122223334444433322  32 244556668888999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..+++..+++....  ..||....+.|-+.+...+.+++|...|...++
T Consensus       453 ~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  453 PTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             ccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999999998663  688999999999999999999999999988765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.55  E-value=0.0057  Score=50.78  Aligned_cols=55  Identities=18%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164          189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      .-...|.+.++.+.|..+.+++.. -.|-+..+|..|..+|.+.|+++.|.-.++.
T Consensus       239 ~Qa~fLl~k~~~~lAL~iAk~av~-lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  239 LQAEFLLSKKKYELALEIAKKAVE-LSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            334556666677777777776663 2333455677777777777777777666554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.043  Score=46.06  Aligned_cols=196  Identities=12%  Similarity=0.002  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .-.|..-|+...+....++ ..|--+-.+|....+.++..+.|+.-.+-+- -|+.+|-.--..+.-.++++.|..=|++
T Consensus       342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~K  419 (606)
T KOG0547|consen  342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQK  419 (606)
T ss_pred             chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666665543322 2266666778888888888888886555322 2566777777777777788888888877


Q ss_pred             HhhCCCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--C
Q 037164          122 TESNPQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--V  182 (250)
Q Consensus       122 m~~~~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~  182 (250)
                      ...   +.|. .+.|..+         +.+++..|++..........   .|+       ..++.+++.+.+.....  |
T Consensus       420 ai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  420 AIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---VYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             Hhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---HHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            663   3333 3333333         67777777777765533332   454       66666666666644321  1


Q ss_pred             C----hhhHHHHHH-H---HHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          183 F----NKGYMTMMG-L---LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       183 ~----~~~~~~li~-~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      +    ...-..+|+ +   +-=.+++..|+.++++..+-. +-....+.+|-..-.+.|++++|.++|++..
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1    001111111 1   112278888888888877432 2245678999999999999999999998754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.45  E-value=0.00026  Score=45.24  Aligned_cols=76  Identities=9%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHCCC-CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGF-ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      +.|+.+|+++.+..- .|+...+-.+..+|.+.|++++|.++++. .  ++.|+. ...-.+-.+|.+.|++++|.++++
T Consensus         6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~   82 (84)
T PF12895_consen    6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIKALE   82 (84)
T ss_dssp             HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            456666666655432 12445555689999999999999999988 2  233333 333345699999999999999987


Q ss_pred             H
Q 037164          121 M  121 (250)
Q Consensus       121 ~  121 (250)
                      +
T Consensus        83 ~   83 (84)
T PF12895_consen   83 K   83 (84)
T ss_dssp             H
T ss_pred             c
Confidence            5

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.43  E-value=0.02  Score=52.27  Aligned_cols=201  Identities=7%  Similarity=-0.050  Sum_probs=118.8

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhH------------------HHHHHHHHHHCCCC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGK------------------AEMVVQEMKDMGFA   58 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~------------------A~~~~~~m~~~~~~   58 (250)
                      .+++.+...+++++|.++.+.-....|+...+-            ..+                  ...+...|.+.  .
T Consensus        36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~--~  113 (906)
T PRK14720         36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLY--G  113 (906)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhh--h
Confidence            688888899999999999997666666655333            111                  12222222221  1


Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      -+...+-.|..+|.+.|+.+++..+++++.+.+ +-|+.+.|.+-..|+.. ++++|.+++.+.... -+.  ..-    
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-~i~--~kq----  184 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-FIK--KKQ----  184 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-HHh--hhc----
Confidence            222456666677777777777777777777766 34667777777777777 777777777766443 110  000    


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP  216 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  216 (250)
                      +.++.+++.++..... .        ..+.+.++.+.+...  ...-..++-.+-..|.+.++++++..+++........
T Consensus       185 ~~~~~e~W~k~~~~~~-~--------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        185 YVGIEEIWSKLVHYNS-D--------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             chHHHHHHHHHHhcCc-c--------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence            2222333333322111 1        112222233333222  1144566777778888999999999999988854333


Q ss_pred             CCCcchHHHHHHHH
Q 037164          217 YDFGLPSSLIDAHC  230 (250)
Q Consensus       217 ~~~~~~~~li~~~~  230 (250)
                       |.....-|+.+|.
T Consensus       256 -n~~a~~~l~~~y~  268 (906)
T PRK14720        256 -NNKAREELIRFYK  268 (906)
T ss_pred             -chhhHHHHHHHHH
Confidence             5666777777776

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.41  E-value=0.043  Score=49.20  Aligned_cols=67  Identities=7%  Similarity=-0.025  Sum_probs=54.8

Q ss_pred             CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ++.++..+-.|-....+.|..++|..+++...+  +.||. .....+...+.+.+.+++|...+++....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            566788899999999999999999999997766  45655 45566778999999999999999888753

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.40  E-value=0.021  Score=40.51  Aligned_cols=129  Identities=14%  Similarity=0.075  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      ..|..++..+ ..++...+...++.+... .+.+   ....-.+-..+...|++++|...|+..... .  ||....   
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~---   84 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELK---   84 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHH---
Confidence            4555666666 488888888888888775 2222   122223447888889999999999988765 3  332111   


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD  218 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  218 (250)
                                                                   ......+-..+...|++++|...++....  ....
T Consensus        85 ---------------------------------------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~  117 (145)
T PF09976_consen   85 ---------------------------------------------PLARLRLARILLQQGQYDEALATLQQIPD--EAFK  117 (145)
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchH
Confidence                                                         01122345666677777777777765332  2233


Q ss_pred             CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          219 FGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       219 ~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      ...+..+-+.|.+.|++++|...|++.
T Consensus       118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  118 ALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            445666777777778888777777654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.39  E-value=0.032  Score=52.37  Aligned_cols=197  Identities=13%  Similarity=0.047  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCC---CchhHhhhHHHHHhcCChhHHHHHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SING---DQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p---~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      .|.++-+..+..  +.+...|-.-|.-+.+.++.++|.+++++.... ++.-   -.-.|.++++.-...|.-+...++|
T Consensus      1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            444443333332  445678999999999999999999999987654 2221   2346777777777788889999999


Q ss_pred             HHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--
Q 037164          120 NMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--  181 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--  181 (250)
                      ++..+.  +.| ...|..|         .++|.++|+.|.+.......   .|.       +..+.+.+..++++...  
T Consensus      1521 eRAcqy--cd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~---vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1521 ERACQY--CDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK---VWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             HHHHHh--cch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh---HHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            999864  332 2334444         78999999999966652222   333       44444444444433321  


Q ss_pred             CC--h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          182 VF--N-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       182 ~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      |.  . ....-....-.+.|+.+.+..+|+..... .|--...|+..|+.=.++|+.+.++.+|++....+
T Consensus      1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            22  1 23334445567899999999999998854 33346789999999999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.38  E-value=0.011  Score=44.37  Aligned_cols=129  Identities=9%  Similarity=0.021  Sum_probs=93.3

Q ss_pred             hccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCC--hhhH
Q 037164           16 EVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGN--REKI   80 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~--~~~a   80 (250)
                      ..++.+++...+...... +.+...|.           .++|...|++..+.+ +.+...+..+-.+ |.+.|+  .++|
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            355667777777766555 33444443           899999999998864 4577888888876 477787  5999


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE  150 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~  150 (250)
                      .+++++..+.+-. +...+..+-..+.+.|++++|...|+++...  .+|+..-+..+  ++++.-+.|.
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i--~~i~~a~~~~  194 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV--ESINMAKLLQ  194 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH--HHHHHHHHHh
Confidence            9999988876332 6788888889999999999999999999874  56665544333  3444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.065  Score=44.99  Aligned_cols=184  Identities=16%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhh----H----HHHHhcCChhHHHHHHHHHhhCCC
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIR----P----SAYAAASDIHGMDKIINMTESNPQ  127 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~l----i----~~~~~~~~~~~a~~~~~~m~~~~g  127 (250)
                      +-|-.+|-..+..-...|+.+...++++....+ ++|-.  ..|.-.    |    --=....|.+.+.++++....-  
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--  395 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--  395 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--
Confidence            345566667777777778888888888876654 66622  112111    1    1123467788888888877653  


Q ss_pred             CCccHHHHHHH-------------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhc---cCCCCh
Q 037164          128 MVLDFNLLAVL-------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQ---TRKVFN  184 (250)
Q Consensus       128 ~~~~~~~~~~l-------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~  184 (250)
                      ++...+||+-+             +..|.+++......+ |.+.   +|.       +.++.++.-.+++.   ..+.+.
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK~K---lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c  471 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PKDK---LFKGYIELELQLREFDRCRKLYEKFLEFSPENC  471 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cchh---HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence            55566777666             666777766665444 3333   333       55555555554444   344555


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+|...-..=...|+.+.|..+|+-..+.. .......|-+-|+-=...|.++.|..+++++++.
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            888877777788899999999998877431 2222344555566666689999999999988765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.003  Score=49.57  Aligned_cols=176  Identities=13%  Similarity=0.016  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhcCChhhHHHHHHHHHh-cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-------------
Q 037164           64 CYIMMILNYLTGNREKIDALMLEMEE-KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-------------  129 (250)
Q Consensus        64 y~~li~~~~~~g~~~~a~~~~~~m~~-~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-------------  129 (250)
                      -+..-....+.|+++.|.+-|+.-.+ .|..| ...||.-+ ++.+.|++++|++...++.++ |++             
T Consensus       147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEG  223 (459)
T ss_pred             hccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceecc
Confidence            33333445678999999999988655 57765 56677665 455678999999999988776 554             


Q ss_pred             ccHH------HH--HHH----------------HHHHHHHHHHHHhhhh-ccCCchhhhc---------chhHHHHHHHH
Q 037164          130 LDFN------LL--AVL----------------LYMAMTMLKKSEGLIA-TKRNSSNAFE---------LKDQLYRIWKH  175 (250)
Q Consensus       130 ~~~~------~~--~~l----------------~~~a~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~  175 (250)
                      ||..      +.  +.+                .+.|.+.+-.|-.+.. .-++ + |..         +.++-.+-++.
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP-v-TLHN~Al~n~~~~p~~g~~KLqF  301 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP-V-TLHNQALMNMDARPTEGFEKLQF  301 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc-h-hhhHHHHhcccCCccccHHHHHH
Confidence            2211      11  111                3444444444431111 1111 1 333         33444444455


Q ss_pred             HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhc-CChhHHHHHHHHH
Q 037164          176 YGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYDFGLPSSLIDAHCKN-GLLEKAQSLINHA  245 (250)
Q Consensus       176 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m  245 (250)
                      +-...+....||..++-.|||..-++.|-+++.+-.+.-. ..+...|+ |++++.-+ -..++|.+-++.+
T Consensus       302 LL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  302 LLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence            5455555568999999999999999999999876332211 22333443 44554443 3566666555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.33  E-value=0.013  Score=52.38  Aligned_cols=126  Identities=6%  Similarity=-0.071  Sum_probs=98.5

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+-.+.-+.|+.++|+.+++...+..|+.....            +++|...+++..... +-+....+.+-.++.+.|+
T Consensus        91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence            344566678999999999999988877665333            899999999998864 4456677788888999999


Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      +++|..+|++.... -+-+..++..+-.++-+.|+.++|...|+.....  ..|...-|+..
T Consensus       170 ~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~  228 (694)
T PRK15179        170 SEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRR  228 (694)
T ss_pred             hHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHH
Confidence            99999999998873 3334788888999999999999999999998653  33444554444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.32  E-value=0.1  Score=46.14  Aligned_cols=231  Identities=10%  Similarity=0.025  Sum_probs=143.7

Q ss_pred             HhhhccChhHHHHHHHHhhhh-hccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164           13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK   90 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   90 (250)
                      .|...++.|++ .+...+... .|....+. .--=.-.+.++....+..|...|..|-.+..+.|+++.+.+.|++...-
T Consensus       274 ~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~  352 (799)
T KOG4162|consen  274 LFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF  352 (799)
T ss_pred             ccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            45556666666 333333333 33333333 2222334455555567789999999999999999999999999986543


Q ss_pred             CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHHh-------hh
Q 037164           91 SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSEG-------LI  153 (250)
Q Consensus        91 gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~~-------~~  153 (250)
                       ..-....|+.+-.+|...|.-..|..+++.-.....-++|...+-..          +++++++-.+...       ..
T Consensus       353 -~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l  431 (799)
T KOG4162|consen  353 -SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL  431 (799)
T ss_pred             -hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh
Confidence             33467789999999999999999999998765431122232222222          3333333333322       11


Q ss_pred             hccCCc--hhhhc-----------chhHHHHHHHHHhcc---CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          154 ATKRNS--SNAFE-----------LKDQLYRIWKHYGQT---RK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       154 ~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      .|....  .++|.           +...-.+..+.+++.   .+  |+...|-++  -|+..++++.|.+..++...-+.
T Consensus       432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~  509 (799)
T KOG4162|consen  432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNR  509 (799)
T ss_pred             hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcC
Confidence            111110  01332           222223333333333   12  444444444  35667789999999999987777


Q ss_pred             CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          216 PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       216 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .-+...|-.|.-.+...+++.+|+.+.+...+
T Consensus       510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            77889999999999999999999999887654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.32  E-value=0.028  Score=43.30  Aligned_cols=159  Identities=7%  Similarity=-0.067  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhc-----
Q 037164           42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAAA-----  109 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~-----  109 (250)
                      .++|...|++..... +.+   ..++..+..+|.+.|++++|...++.+.+.  .|+..    ++..+-.++.+.     
T Consensus        49 ~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        49 YTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHHHHHHhccccc
Confidence            566777777765542 222   246778888999999999999999998764  23222    344444555544     


Q ss_pred             ---CChhHHHHHHHHHhhCCCCCcc-HHHHHHH--HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--
Q 037164          110 ---SDIHGMDKIINMTESNPQMVLD-FNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--  181 (250)
Q Consensus       110 ---~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  181 (250)
                         |+.+.|.+.++.+...   .|+ ...+..+  +......+..-.  . ....   .|...++..++...++....  
T Consensus       126 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~--~-~~a~---~~~~~g~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKE--L-YVAR---FYLKRGAYVAAINRFETVVENY  196 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHH--H-HHHH---HHHHcCChHHHHHHHHHHHHHC
Confidence               7789999999988653   222 2222111  111111100000  0 0000   22244444555444444311  


Q ss_pred             ---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          182 ---V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       182 ---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                         | ....+..+..++.+.|+.++|..+++.+..
T Consensus       197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence               2 236788999999999999999999998874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.32  E-value=0.0051  Score=46.11  Aligned_cols=92  Identities=14%  Similarity=0.082  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhh-----cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC--------
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-----TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS--------  110 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~--------  110 (250)
                      .-.+.|+....  -..|..+|..++..|.+     .|..+=...-+..|.+-|+.-|..+|+.||+.+=+..        
T Consensus        32 ~~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ  109 (228)
T PF06239_consen   32 PHEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ  109 (228)
T ss_pred             chHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence            33444554422  24688999999999965     4677777888889999999999999999999997632        


Q ss_pred             --------ChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164          111 --------DIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus       111 --------~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                              +-+-|.+++++|... |+-||..|+..+
T Consensus       110 ~~F~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~l  144 (228)
T PF06239_consen  110 AEFMHYPRQQECAIDLLEQMENN-GVMPDKETEQML  144 (228)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence                    234589999999999 999999998887

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.31  E-value=0.0066  Score=48.31  Aligned_cols=61  Identities=25%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF---GLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ..|..-+.-+.+.|+.+.|..+|+..... +.++.   .+|...++-=.+.|+++.+..+.+++.
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455555555555555555555555422 22211   245555555555555555555555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.29  E-value=0.029  Score=39.03  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=79.0

Q ss_pred             HHHHHHHCCCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164           48 VVQEMKDMGFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNP  126 (250)
Q Consensus        48 ~~~~m~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~  126 (250)
                      .|++..+.  .| +......+...+...|++++|.+.++.....+ +.+...|..+-.++.+.|++++|..++++.... 
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            34444443  33 34556677777888999999999998877753 346677888888888999999999888876543 


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037164          127 QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKT  206 (250)
Q Consensus       127 g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  206 (250)
                        .|+                                                   +...+..+-..+...|+.+.|...
T Consensus        81 --~p~---------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~  107 (135)
T TIGR02552        81 --DPD---------------------------------------------------DPRPYFHAAECLLALGEPESALKA  107 (135)
T ss_pred             --CCC---------------------------------------------------ChHHHHHHHHHHHHcCCHHHHHHH
Confidence              111                                                   123344455677788888888888


Q ss_pred             HHHHHhCCCCCCCcch
Q 037164          207 LRNWTSKNLPYDFGLP  222 (250)
Q Consensus       207 ~~~m~~~~~~~~~~~~  222 (250)
                      |+.....  .|+...+
T Consensus       108 ~~~al~~--~p~~~~~  121 (135)
T TIGR02552       108 LDLAIEI--CGENPEY  121 (135)
T ss_pred             HHHHHHh--ccccchH
Confidence            8877653  3444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.26  E-value=0.11  Score=45.15  Aligned_cols=233  Identities=12%  Similarity=0.043  Sum_probs=116.2

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHH-HHh-hcCCh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMI-LNY-LTGNR   77 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~-~~~-~~g~~   77 (250)
                      ....+.|.++.|.+-+.......-+...|.            +++|..++..+...+  ||..-|+.... ++. -.+..
T Consensus       193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~  270 (700)
T KOG1156|consen  193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDML  270 (700)
T ss_pred             HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhH
Confidence            456677888888877766655534444444            899999999998874  66666655554 443 33444


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH--HHHHHHHHH----h
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM--AMTMLKKSE----G  151 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~--a~~~~~~~~----~  151 (250)
                      +....+|....+. .+-....-..=++..-...-.+...+++..+.+. |+++-......+++.  -..++++..    .
T Consensus       271 ~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~  348 (700)
T KOG1156|consen  271 EALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH  348 (700)
T ss_pred             HHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence            4444677665543 1111100000111111122344556666666666 777665555555111  112333332    1


Q ss_pred             hhhccCC-----------ch-hhhc---------chhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHH
Q 037164          152 LIATKRN-----------SS-NAFE---------LKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTL  207 (250)
Q Consensus       152 ~~~~~~~-----------~~-~~~~---------~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~  207 (250)
                      .......           -+ -.|.         ..++.+.+.+.+.....  |+. ..|..=-..+...|+++.|..++
T Consensus       349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l  428 (700)
T KOG1156|consen  349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWL  428 (700)
T ss_pred             hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            1111100           00 0111         55555555555555443  222 22222225666667777777777


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      .+..+-+ .+|..+=.-=..-..++++.++|..+.....+.|
T Consensus       429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            6665332 2232222223334455667777777766665554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.26  E-value=0.0009  Score=51.95  Aligned_cols=70  Identities=14%  Similarity=0.005  Sum_probs=60.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----------------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----------------NREKIDALMLEMEEKSINGDQFTLGIRPSA  105 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----------------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~  105 (250)
                      ++=-..-++.|++.|+.-|..+|+.||+.+-+-.                +-+-+..++++|+.+|+.||-.+=.+|+++
T Consensus        88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~  167 (406)
T KOG3941|consen   88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA  167 (406)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence            4445566788999999999999999999886533                336789999999999999999999999999


Q ss_pred             HHhcCC
Q 037164          106 YAAASD  111 (250)
Q Consensus       106 ~~~~~~  111 (250)
                      |++.+-
T Consensus       168 FGr~~~  173 (406)
T KOG3941|consen  168 FGRWNF  173 (406)
T ss_pred             hccccc
Confidence            999885

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.24  E-value=0.002  Score=51.25  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhc-cccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+...-+.++++.|.++|....+..+ +...|-            .+.|..+|+...+. ++.+...|..-+..+.+.|+
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc
Confidence            35566777888899999988875421 222332            55588888888765 66777788888888888888


Q ss_pred             hhhHHHHHHHHHhcCCCCCc---hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           77 REKIDALMLEMEEKSINGDQ---FTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~---~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      .+.|..+|+..... +.++.   ..|...+..=.+.|+++.+.++.+++...
T Consensus        86 ~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   86 INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888876655 43333   47888888888888888888888877653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.077  Score=40.86  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 037164          173 WKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG---LLEKAQSLINHAET  247 (250)
Q Consensus       173 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~  247 (250)
                      ...+-+.+..|...|.-+-+.|...|++++|...++++.-. -|.+...|..+-+.+--.|   +.+-|.+++.+.++
T Consensus       143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33344445678899999999999999999999999998832 3334555666666654444   45566666666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.12  E-value=0.047  Score=38.72  Aligned_cols=101  Identities=4%  Similarity=-0.108  Sum_probs=72.5

Q ss_pred             HHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           46 EMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        46 ~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      +.+|++..+.  .|+  .+..+-..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+.....
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3456666554  355  35567788899999999999999877652 337788899999999999999999999998753


Q ss_pred             CCCCccHHHHHHH---------HHHHHHHHHHHHhhh
Q 037164          126 PQMVLDFNLLAVL---------LYMAMTMLKKSEGLI  153 (250)
Q Consensus       126 ~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~  153 (250)
                        -+.+...+..+         .++|...|.......
T Consensus        88 --~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         88 --DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence              22233333333         677777777765433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.09  E-value=0.007  Score=38.29  Aligned_cols=80  Identities=10%  Similarity=-0.068  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      ++|...|++..+. .+.+...+..+..++...|++++|.++++...... +.+..++..+...+...|+++.|...++..
T Consensus        17 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          17 DEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3444444444433 22334667777778888888888888888766643 234457777778888888888888888776


Q ss_pred             hh
Q 037164          123 ES  124 (250)
Q Consensus       123 ~~  124 (250)
                      ..
T Consensus        95 ~~   96 (100)
T cd00189          95 LE   96 (100)
T ss_pred             Hc
Confidence            53

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.06  Score=41.73  Aligned_cols=139  Identities=15%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCc---cHHHHHHH--HHHHHHHHHHHHhhhhccCCc--hhhhc----chhHHHH
Q 037164          103 PSAYAAASDIHGMDKIINMTESNPQMVL---DFNLLAVL--LYMAMTMLKKSEGLIATKRNS--SNAFE----LKDQLYR  171 (250)
Q Consensus       103 i~~~~~~~~~~~a~~~~~~m~~~~g~~~---~~~~~~~l--~~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~  171 (250)
                      ...|+..+++++|.+......   +++.   ++.+...+  .+-|.+.+++|......-...  ...|-    .-+.+.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE---NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence            466777777777777765521   2221   11222222  555666666665322100000  00111    2223444


Q ss_pred             HHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC-hhHHHHHHHHH
Q 037164          172 IWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL-LEKAQSLINHA  245 (250)
Q Consensus       172 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m  245 (250)
                      ++-.++++   .+|+..+-|....++...|++++|+.++++...+... ++.+..-+|-+-...|. .+-..+.+..+
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            44444443   4466677777777888888888888888887755333 34444444433334443 33344444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.012  Score=45.19  Aligned_cols=82  Identities=7%  Similarity=-0.027  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ...|...|++.... =++|..+||.+--+|.+.|+++.|..-|.+..+-. .-+...+|+|--.+.-.||.+.|..++..
T Consensus       116 ~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~  193 (257)
T COG5010         116 FGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLP  193 (257)
T ss_pred             hHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence            66677777766654 35677778888888888888888877777655542 22556677777777777888888887777


Q ss_pred             HhhC
Q 037164          122 TESN  125 (250)
Q Consensus       122 m~~~  125 (250)
                      ....
T Consensus       194 a~l~  197 (257)
T COG5010         194 AYLS  197 (257)
T ss_pred             HHhC
Confidence            7655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.03  Score=39.71  Aligned_cols=112  Identities=12%  Similarity=-0.091  Sum_probs=73.9

Q ss_pred             hccChhHHHHHHHHhhhh-----hccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164           16 EVHGVEQAEIYFDNISKL-----LRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE   89 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~~-----~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~   89 (250)
                      ..++.+.+...+......     .++...+. +......++.+.       ..+...++..+...|++++|.++.+....
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELY-------LDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            456777777777766655     12222222 444444444443       25777888889999999999999999887


Q ss_pred             cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHHH
Q 037164           90 KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNLL  135 (250)
Q Consensus        90 ~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~~  135 (250)
                      . -+-|...|..+|.+|...|+...|.++|+.+...    -|+.|+..+-
T Consensus        91 ~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   91 L-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             H-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             c-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            6 2347889999999999999999999999987432    3888887663

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.99  E-value=0.0031  Score=37.87  Aligned_cols=57  Identities=14%  Similarity=0.032  Sum_probs=48.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      -..+.+.|++++|...|+...... +-+...+..+-..+.+.|++++|..+|+++++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            457889999999999999998554 557888999999999999999999999998754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.98  E-value=0.011  Score=42.08  Aligned_cols=77  Identities=8%  Similarity=0.086  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      .++|...|++.....-.|+  ....-.|...+...|++++|+..++......+  ....+...-+.|.+.|+.++|...|
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y  141 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAY  141 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4555555555544431111  11222234444555555555555543222211  1223333345555555555555554


Q ss_pred             H
Q 037164          120 N  120 (250)
Q Consensus       120 ~  120 (250)
                      +
T Consensus       142 ~  142 (145)
T PF09976_consen  142 Q  142 (145)
T ss_pred             H
Confidence            4

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.044  Score=42.42  Aligned_cols=110  Identities=8%  Similarity=-0.023  Sum_probs=84.1

Q ss_pred             hHhhhccChhHHHHHHHHhhhh---hccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHH----hhcCChhhH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKL---LRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILN----YLTGNREKI   80 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~---~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~----~~~g~~~~a   80 (250)
                      ..|.+.|++++|.+........   ..+....-    ++.|...+++|.+.   -+..|-+-|-.++    .-.+....|
T Consensus       116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA  192 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA  192 (299)
T ss_pred             HHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence            4678889999999987652221   12222221    88999999999875   3557777666665    345678899


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      .=+|++|.+. ..|+..+-|-...++...|++++|..++++...+
T Consensus       193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999998875 8899999999999999999999999999998665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.98  E-value=0.07  Score=41.10  Aligned_cols=60  Identities=7%  Similarity=-0.082  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .-+.++....+.|++..|...|.+...- -+||..+|+.+--+|-+.|+++.|..-|.+..
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            3344555555555555555555544332 33455555555555555555555555555544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.97  E-value=0.22  Score=43.40  Aligned_cols=121  Identities=7%  Similarity=-0.122  Sum_probs=72.2

Q ss_pred             hccChhHHHHHHHHhhhh-hccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHH
Q 037164           16 EVHGVEQAEIYFDNISKL-LRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDAL   83 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~~-~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~   83 (250)
                      ..|+-++|......-... ..+.++|.           .++|+..|......+ +-|...+.-|-..-++.|+++.....
T Consensus        53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            356666666666544333 34444444           566666666666543 44566666666666667777666666


Q ss_pred             HHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           84 MLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        84 ~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      -.+..+. .+-.-..|.....++.-.|+...|..++++..+...-.|+...+...
T Consensus       132 r~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s  185 (700)
T KOG1156|consen  132 RNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS  185 (700)
T ss_pred             HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            5555443 22234566777777777788888888887776552234555555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.97  E-value=0.045  Score=39.14  Aligned_cols=104  Identities=12%  Similarity=-0.035  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +++|.++|+.....+ +-+..-|-.|-.+|-..|++++|...+......+. -|+..+-.+-.++...|+.+.|.+.|+.
T Consensus        51 l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363         51 FAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888887764 35667788888889999999999999998887764 5788899999999999999999999998


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSE  150 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~  150 (250)
                      ....-+   +...+..+-++|...+..+.
T Consensus       129 Ai~~~~---~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        129 VVRICG---EVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHHhc---cChhHHHHHHHHHHHHHHhh
Confidence            765413   23445555666666665543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.94  E-value=0.048  Score=37.63  Aligned_cols=137  Identities=13%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             HhcCChhHHHHHHHHHhhCCCC-CccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh
Q 037164          107 AAASDIHGMDKIINMTESNPQM-VLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN  184 (250)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~~~g~-~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (250)
                      .-.|.+++..+++.+...+..+ +-+|+.++.+ .-....+++.++.-....+.     ..++.+.++...+.... .+.
T Consensus        13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi-----s~C~NlKrVi~C~~~~n-~~s   86 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI-----SKCGNLKRVIECYAKRN-KLS   86 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G-----GG-S-THHHHHHHHHTT----
T ss_pred             HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-----hhhcchHHHHHHHHHhc-chH
Confidence            3456777777777776443122 3567777776 33333344444433322222     16677777777765553 334


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      .....-+..+.+.|+-|+-.+++..+.. ...+++...-.+-.||.+-|+..++.+++.++=++|+
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            5567888999999999999999999873 5667788888899999999999999999999988884

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.93  E-value=0.00089  Score=40.67  Aligned_cols=52  Identities=21%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          195 LKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       195 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+.|++++|.++|+++... .+-+..++..+..+|.+.|++++|..+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567778888888877643 333666677777888888888888887776654

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.90  E-value=0.26  Score=43.08  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             chhHHHHHHHHHhccCC----CCh-hhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----c
Q 037164          165 LKDQLYRIWKHYGQTRK----VFN-KGYMTMMGLLLKL---DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----N  232 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~----~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~  232 (250)
                      ....+++.++.++....    |.. ..|+.-+.-+.+.   .+.+.|.++|++..+ |.+|...-  ++.-.|++    .
T Consensus       523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~  599 (835)
T KOG2047|consen  523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEH  599 (835)
T ss_pred             hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHh
Confidence            55556677777766533    555 6777766555443   368999999999996 66654222  22223332    5


Q ss_pred             CChhHHHHHHHHHH
Q 037164          233 GLLEKAQSLINHAE  246 (250)
Q Consensus       233 g~~~~a~~~~~~m~  246 (250)
                      |....|..++++..
T Consensus       600 GLar~amsiyerat  613 (835)
T KOG2047|consen  600 GLARHAMSIYERAT  613 (835)
T ss_pred             hHHHHHHHHHHHHH
Confidence            77888888887754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.1  Score=44.69  Aligned_cols=83  Identities=11%  Similarity=0.007  Sum_probs=65.8

Q ss_pred             hhcchhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhH
Q 037164          162 AFELKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEK  237 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~  237 (250)
                      .|+..++.+++.+.|+....  |+. ..||-|-..+....+-++|..-|++..+  +.|. ++++.-|--+|...|.+++
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHH
Confidence            55577888888888877533  555 8899999999999999999999999875  4454 5666667778999999999


Q ss_pred             HHHHHHHHH
Q 037164          238 AQSLINHAE  246 (250)
Q Consensus       238 a~~~~~~m~  246 (250)
                      |...|-..+
T Consensus       517 A~~hlL~AL  525 (579)
T KOG1125|consen  517 AVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHH
Confidence            998876654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.86  E-value=0.006  Score=42.16  Aligned_cols=99  Identities=10%  Similarity=-0.015  Sum_probs=74.1

Q ss_pred             CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhh-hhccCCchhhhcchhHHHHHH
Q 037164           95 DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGL-IATKRNSSNAFELKDQLYRIW  173 (250)
Q Consensus        95 ~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      |..++.++|.++++.|+++...++++..=   |+.++...               ... ..+.++               
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~---------------~~~~~~~~sp---------------   47 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKK---------------KEGDYPPSSP---------------   47 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcc---------------ccCccCCCCC---------------
Confidence            56789999999999999999999986553   55443110               000 111111               


Q ss_pred             HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhc
Q 037164          174 KHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKN  232 (250)
Q Consensus       174 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~  232 (250)
                            ..|+..+..+++.+|+..|++..|.++++..... +++.+..+|..|++=+...
T Consensus        48 ------l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   48 ------LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             ------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence                  1289999999999999999999999999998744 7888888999998765543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.23  Score=41.16  Aligned_cols=183  Identities=11%  Similarity=0.060  Sum_probs=109.8

Q ss_pred             CccHHHHHHHHHHHhh--cCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-
Q 037164           58 ARRTIYCYIMMILNYL--TGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-  133 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-  133 (250)
                      +|+-.+-..-|.+++.  .++...+..++.-.... -+.-|+.....+-+++...|+.++|...|++.+..   .|+.. 
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~  267 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVE  267 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---Chhhhh
Confidence            3343444555655544  45555555555544443 35557788889999999999999999999988753   33322 


Q ss_pred             ---HHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-----chhHHHHHHHHHhccCCCChhhHHHHH---HHHHh
Q 037164          134 ---LLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-----LKDQLYRIWKHYGQTRKVFNKGYMTMM---GLLLK  196 (250)
Q Consensus       134 ---~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~  196 (250)
                         .|..+      +++...+...+-.......... ...     ...+..+++...+.....+......+|   ..+..
T Consensus       268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w-fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~  346 (564)
T KOG1174|consen  268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW-FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA  346 (564)
T ss_pred             hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh-hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence               22222      3333333333321111111100 001     566677777776665554443333333   56778


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      .|++++|.--|+..... -+-+..+|.-|+.+|...|.+.+|.-.-+..
T Consensus       347 ~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  347 LERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             ccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            88999988888876532 2346788999999999999998887665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.80  E-value=0.053  Score=36.49  Aligned_cols=60  Identities=15%  Similarity=-0.030  Sum_probs=32.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWTSKNL--PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..+...+.+.|+++.|...|+.......  +....++..+...+.+.|++++|...++++.+
T Consensus        43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            3455556666666666666666553211  11233455555556666666666666665554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.80  E-value=0.25  Score=42.24  Aligned_cols=146  Identities=12%  Similarity=0.081  Sum_probs=86.7

Q ss_pred             hhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHHhhhh
Q 037164           77 REKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSEGLIA  154 (250)
Q Consensus        77 ~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~~~~~  154 (250)
                      .+...++++..... .+.|+ .+|..+|+.-.+..-++.|..+|.+.++. +..+ +++..+++++          -.+ 
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mE----------y~c-  413 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALME----------YYC-  413 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHH----------HHh-
Confidence            55666666665543 33443 45677777777777788888888888777 4444 5555544411          001 


Q ss_pred             ccCCchhhhcchhHHHHHHHHHhccCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHH
Q 037164          155 TKRNSSNAFELKDQLYRIWKHYGQTRK--VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAH  229 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~  229 (250)
                                 .++-.-+++.++....  +|. .--...++-+...++-..|..+|+.....+..||  ..+|..+|+-=
T Consensus       414 -----------skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE  482 (656)
T KOG1914|consen  414 -----------SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE  482 (656)
T ss_pred             -----------cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence                       1111112222222211  333 3335667777777777778888877776655543  46677777777


Q ss_pred             HhcCChhHHHHHHHHHH
Q 037164          230 CKNGLLEKAQSLINHAE  246 (250)
Q Consensus       230 ~~~g~~~~a~~~~~~m~  246 (250)
                      +.-|++..+.++-+++.
T Consensus       483 S~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  483 SNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HhcccHHHHHHHHHHHH
Confidence            77777777777766654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.74  E-value=0.099  Score=43.87  Aligned_cols=27  Identities=11%  Similarity=-0.020  Sum_probs=14.2

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLR  208 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~  208 (250)
                      .+...|..|-.+|...|+..+|..-..
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            334555555555555555555544443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.73  E-value=0.17  Score=38.53  Aligned_cols=169  Identities=12%  Similarity=-0.001  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      ...|..-+++.++.+ +.+..+|.++-..|-+.|..+.|.+-|+.-.+  +.| +..+.|+.-..+|..|.+++|.+.|+
T Consensus        51 ~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~  127 (250)
T COG3063          51 YAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRPEEAMQQFE  127 (250)
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCChHHHHHHHH
Confidence            566666666666653 44567778888888888888888888875444  344 34566777777788888888888888


Q ss_pred             HHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164          121 MTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM  191 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  191 (250)
                      +....|....-..+|..+         .+.|.+.|++.........                           ...-.+.
T Consensus       128 ~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~---------------------------~~~l~~a  180 (250)
T COG3063         128 RALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP---------------------------PALLELA  180 (250)
T ss_pred             HHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---------------------------hHHHHHH
Confidence            877664443333333332         4555555555443221111                           2223344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ....+.|+.-.|..+++.....+. ++..+.-..|+---+.|+-+.+.++
T Consensus       181 ~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         181 RLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence            444455555555555555443332 4444444444444445554444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.73  E-value=0.43  Score=43.20  Aligned_cols=57  Identities=14%  Similarity=-0.010  Sum_probs=29.4

Q ss_pred             HHHhcCCHHHHHHHHH-HHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          193 LLLKLDDVKGAEKTLR-NWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      .+...|+.++|.+++. ...+.-..-+...-+--++.+...++|.+-.++-.++..+|
T Consensus       199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            3344556666666663 22233233333444445555566666666666655555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.16  Score=39.17  Aligned_cols=109  Identities=10%  Similarity=0.007  Sum_probs=88.2

Q ss_pred             hhccChhHHHHHHHHhhhhhccccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHH
Q 037164           15 FEVHGVEQAEIYFDNISKLLRQCLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDA   82 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~~~~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~   82 (250)
                      --+|+...|...++.+....|++.--.            .++|+++++.+.+.+ +.|.++|--=+...-..|+.-+|.+
T Consensus        63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence            346788888888888887754433111            789999999999876 6778888877777777888888888


Q ss_pred             HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      -+.+..+. +.-|...|.-+-..|...|++++|.-+++++...
T Consensus       142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            88887766 6679999999999999999999999999998753

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.72  E-value=0.0049  Score=37.34  Aligned_cols=52  Identities=6%  Similarity=0.070  Sum_probs=36.5

Q ss_pred             hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           72 YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        72 ~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ...|++++|.++|+..... -+-|...+-.+..+|.+.|++++|.++++.+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567788888888877665 222556666777888888888888888887754

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.70  E-value=0.048  Score=45.01  Aligned_cols=80  Identities=11%  Similarity=-0.073  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|+++|++..+.+ +.+...|..+..+|.+.|++++|...++...+.  .| +...|..+-.+|...|++++|...|+
T Consensus        18 ~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         18 FALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            556677777766653 446778888889999999999999999988764  34 56678888899999999999999999


Q ss_pred             HHhh
Q 037164          121 MTES  124 (250)
Q Consensus       121 ~m~~  124 (250)
                      +...
T Consensus        95 ~al~   98 (356)
T PLN03088         95 KGAS   98 (356)
T ss_pred             HHHH
Confidence            8874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.68  E-value=0.06  Score=36.24  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ...+..+..++.+.|+++.|...++......  -......+..+..++.+.|+.++|.+.++++...
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            3456667788888888888888888876542  1112345666777888888888888888887654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.37  Score=41.64  Aligned_cols=59  Identities=10%  Similarity=0.003  Sum_probs=38.8

Q ss_pred             hhHHHHHHH-H-HhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          185 KGYMTMMGL-L-LKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       185 ~~~~~li~~-~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      ..+.+++.. . ++......|.+++.........-...+--.++......|+++.|.+++.
T Consensus       340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            444444432 2 3333577888888877643332234566677788888999999999988

>PLN02789 farnesyltranstransferase

Probab=96.65  E-value=0.27  Score=39.93  Aligned_cols=218  Identities=9%  Similarity=-0.068  Sum_probs=119.4

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-cccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh-
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-   77 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~-   77 (250)
                      .++.+.++.++|..+.+.+....|+- .+|+            .++|+..++++.+.+ +.+..+|+-.-..+.+.|+. 
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence            34555667777777777766652222 2222            466777777776653 34455666555555555543 


Q ss_pred             -hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhcc
Q 037164           78 -EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATK  156 (250)
Q Consensus        78 -~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~  156 (250)
                       +++..+++.+.+.+- -|..+|+..--.+.+.|+++++++.++++.+. +. -+...|+..   . -++..+.......
T Consensus       124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R---~-~vl~~~~~l~~~~  196 (320)
T PLN02789        124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQR---Y-FVITRSPLLGGLE  196 (320)
T ss_pred             hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHH---H-HHHHhcccccccc
Confidence             566777766665432 26677777777777777777777777777654 22 223333222   0 0111110000000


Q ss_pred             CCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc
Q 037164          157 RNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL----DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN  232 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  232 (250)
                      ..      ....+..+.+.++. .+-+...|+.+...+...    ++..+|..++.+.... .+.+......|++.|+..
T Consensus       197 ~~------~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        197 AM------RDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cc------HHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHHhh
Confidence            00      01111111122222 123447788777777763    3446688888776543 344677788899999874


Q ss_pred             C------------------ChhHHHHHHHHH
Q 037164          233 G------------------LLEKAQSLINHA  245 (250)
Q Consensus       233 g------------------~~~~a~~~~~~m  245 (250)
                      .                  ..++|.++++.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        269 LQPTAEFRDTVDTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             hccchhhhhhhhccccccccHHHHHHHHHHH
Confidence            3                  236677777776

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.65  E-value=0.35  Score=42.32  Aligned_cols=62  Identities=13%  Similarity=0.068  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ..|..+-+.|-..|+++.|..+|++...-..+--   ..+|-.--+.=.++.+++.|.++.++..
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~  452 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT  452 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence            5677888889999999999999998764332221   2345444555566778888888877653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.60  E-value=0.63  Score=43.49  Aligned_cols=235  Identities=15%  Similarity=0.092  Sum_probs=138.1

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccccc------c-----------hhHHHHHHHHHHHC----C-CCccHHHHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFF------G-----------VGKAEMVVQEMKDM----G-FARRTIYCYIMMIL   70 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y------~-----------~~~A~~~~~~m~~~----~-~~p~~~~y~~li~~   70 (250)
                      .+...|++++|...++......+....+      +           +++|...+++....    | ..+-..+.+.+...
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            3456789999999998865532221111      1           67788887776542    1 11123455666777


Q ss_pred             HhhcCChhhHHHHHHHHHh----cCCC--C-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCcc--HHHHHHH--
Q 037164           71 NYLTGNREKIDALMLEMEE----KSIN--G-DQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLD--FNLLAVL--  138 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~----~gi~--p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~--~~~~~~l--  138 (250)
                      +...|+++.|...+++...    .|..  | ....+..+-..+...|++++|...+++.... ....+.  ...+..+  
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            8899999999999887544    2321  1 2233445556777889999999998876432 011122  2222212  


Q ss_pred             -------HHHHHHHHHHHHhhhhccCCchhhh------------cchhHHHHHHHHHhccCCC---Chh----hHHHHHH
Q 037164          139 -------LYMAMTMLKKSEGLIATKRNSSNAF------------ELKDQLYRIWKHYGQTRKV---FNK----GYMTMMG  192 (250)
Q Consensus       139 -------~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~----~~~~li~  192 (250)
                             .+.|...+.+............ .+            ...++.+.+...+.....+   ...    .+..+-.
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~  699 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHS-DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR  699 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccH-hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence                   6777777777653211110000 00            0223444444444332221   111    1345557


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC----CCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          193 LLLKLDDVKGAEKTLRNWTSK----NLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ++...|+.++|...+++....    |..+ ...+...+-.++.+.|+.++|...+.+..+.
T Consensus       700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788999999999999987643    2222 1345666777888999999999999988753

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.58  E-value=0.13  Score=45.68  Aligned_cols=48  Identities=19%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                      |.-.+-.-|-..|+...|+.-|-+.         .-|.+-+..|-.++.|++|.++-
T Consensus       884 t~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  884 THKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHH
Confidence            3344445555666676666665432         23455666676777777666654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.58  E-value=0.011  Score=35.47  Aligned_cols=57  Identities=5%  Similarity=-0.069  Sum_probs=45.7

Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +...+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|...|++...
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456788999999999999988875 33667778888999999999999999998753

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.57  E-value=0.0021  Score=41.00  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      ...+..+-.+|.+.|++++|..+++... .+. .+....-.+..+|.+.|++++|..++++.
T Consensus        25 ~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   25 SAYLYNLAQCYFQQGKYEEAIELLQKLK-LDP-SNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHCHT-HHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            3445558899999999999999998822 111 23345556688899999999999999863

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.57  E-value=0.013  Score=35.59  Aligned_cols=64  Identities=11%  Similarity=-0.014  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~~m~~  124 (250)
                      ++.+|..+-..+.+.|++++|+..|.+..+.+ +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            56789999999999999999999999987763 336678888889999999 79999999988653

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.36  E-value=0.38  Score=38.32  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-----c-chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF-----G-LPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~-~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ..+..+...+.+.|++++|.++|++........+.     . .+-..+-.+...|++..|...+++..
T Consensus       156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~  223 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC  223 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44556667777778888888888777654332211     1 12233445566777777777777654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.36  E-value=0.0084  Score=36.41  Aligned_cols=63  Identities=16%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG-LLEKAQSLINHAET  247 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  247 (250)
                      ...|..+-..+...|++++|+..|++..... +.+...|..+-.+|...| ++++|.+.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4567888889999999999999999988653 447888999999999999 79999999998875

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.36  E-value=0.0083  Score=37.48  Aligned_cols=63  Identities=10%  Similarity=-0.058  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhc--CCC---CC-chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEK--SIN---GD-QFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~---p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      ..+|+.+-..|...|++++|+..|++..+.  .+.   |+ ..+++.+-.+|...|++++|.+.+++..
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467899999999999999999999987543  122   33 5678889999999999999999998764

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.28  E-value=0.048  Score=34.23  Aligned_cols=82  Identities=16%  Similarity=0.018  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164          166 KDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       166 ~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                      .++..++.+.++...   +.+...+..+...+...|++++|.+.++..... .+.+..++..+...+...|+++.|...+
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~   91 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEALEAY   91 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHHHHHH
Confidence            344444455444432   233366777888899999999999999988754 3345568888999999999999999999


Q ss_pred             HHHHhc
Q 037164          243 NHAETK  248 (250)
Q Consensus       243 ~~m~~~  248 (250)
                      ....+.
T Consensus        92 ~~~~~~   97 (100)
T cd00189          92 EKALEL   97 (100)
T ss_pred             HHHHcc
Confidence            887654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.21  E-value=0.026  Score=34.61  Aligned_cols=56  Identities=20%  Similarity=0.062  Sum_probs=47.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          192 GLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..|.+.++++.|.++++.+... .|.++..|...-..|.+.|++++|...|++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5678899999999999998854 4447888888889999999999999999988764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.02  E-value=0.0069  Score=37.84  Aligned_cols=63  Identities=14%  Similarity=0.035  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK----NL-PYD-FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+|+.+-..|...|++++|+..|++....    |. .|+ ..+++.+-..|...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            57888889999999999999999997632    21 222 66788899999999999999999998764

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.97  Score=39.18  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=39.8

Q ss_pred             hhhHHHHH---HHHHhcCCHHHHHHHHHHHHhCC-------CCC------CCc-chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          184 NKGYMTMM---GLLLKLDDVKGAEKTLRNWTSKN-------LPY------DFG-LPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       184 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~-------~~~------~~~-~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ..+|..+.   ..+...|++.+|+++++....-+       -..      +.. +---|.-.+-..|+-++|..++...+
T Consensus       172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34554444   45677899999999999872111       111      011 11223345667899999999888877


Q ss_pred             hc
Q 037164          247 TK  248 (250)
Q Consensus       247 ~~  248 (250)
                      +.
T Consensus       252 ~~  253 (652)
T KOG2376|consen  252 KR  253 (652)
T ss_pred             Hh
Confidence            64

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.92  E-value=0.25  Score=36.15  Aligned_cols=65  Identities=9%  Similarity=-0.035  Sum_probs=52.7

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ....|..+...|...|++++|...|++..+.+-.|.  ...|..+...+.+.|++++|...+++...
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345678888889999999999999998776533322  36788888999999999999999998765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.85  E-value=0.13  Score=36.80  Aligned_cols=83  Identities=4%  Similarity=-0.206  Sum_probs=62.8

Q ss_pred             chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ..|+++.+...++....   .+...|..|--++-..|++.+|+..|....... +-|+..+-.+-.++...|+.+.|.+.
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKA  125 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            45555555555554433   444667777788888899999999999988655 46788888888999999999999999


Q ss_pred             HHHHHhc
Q 037164          242 INHAETK  248 (250)
Q Consensus       242 ~~~m~~~  248 (250)
                      |+..+..
T Consensus       126 F~~Ai~~  132 (157)
T PRK15363        126 LKAVVRI  132 (157)
T ss_pred             HHHHHHH
Confidence            9877653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.86  Score=37.17  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhH-HHHHhcCChhHHHHHHHHH
Q 037164           67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRP-SAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li-~~~~~~~~~~~a~~~~~~m  122 (250)
                      +..+++..|++.+|+++|-......++ |..+|.+++ .+|.+.+..+.|..++-.+
T Consensus       399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            445566666666677666655544444 445554443 6666666666666655333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.76  E-value=0.27  Score=42.78  Aligned_cols=114  Identities=6%  Similarity=-0.008  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHhhhhhccc-cccc-------------------hhHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhcCChh
Q 037164           20 VEQAEIYFDNISKLLRQC-LFFG-------------------VGKAEMVVQEMKDM-GFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        20 ~~~a~~~f~~~~~~~~~~-~~y~-------------------~~~A~~~~~~m~~~-~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      .+.|..+|++..+..|+- ..|.                   +..+.+..++.... ....+..+|.++--.+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            667888888877765543 1222                   22333333332221 13345567777766666778888


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL  135 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  135 (250)
                      +|...+++..+.+  |+...|..+-..+...|+.++|...+++...-....|+.+.+
T Consensus       438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~  492 (517)
T PRK10153        438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI  492 (517)
T ss_pred             HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence            8888888776654  677888888888888888888888888765321333444333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.71  E-value=0.73  Score=35.89  Aligned_cols=60  Identities=7%  Similarity=-0.038  Sum_probs=46.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          189 TMMGLLLKLDDVKGAEKTLRNWTSK--NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       189 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+..-|.+.|....|..=++.+...  +.+......-.|+.+|.+.|..++|..+...+..+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~n  241 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAAN  241 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence            4456789999999999999998853  33334555668889999999999999988776544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.69  E-value=0.04  Score=39.07  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ....++..+...|+.+.|..+.+.+... -|.|...|..+|.+|...|+...|.++++++.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3455667777788888888888887743 455777888888888888888888888877653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=1.3  Score=41.26  Aligned_cols=177  Identities=12%  Similarity=0.036  Sum_probs=101.1

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH---
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEK--SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN---  133 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~---  133 (250)
                      .|+..-+....++...+.+.+..++++.+.-.  -+.-+...-|.||-.-.+ -|..++.+.++++..-  -.|+..   
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny--Da~~ia~ia 1058 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY--DAPDIAEIA 1058 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC--CchhHHHHH
Confidence            35556677778888888888888888875432  122222223444444333 4556677777777653  223322   


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCC--------ch-h----------hhc-------chhHHHHHHHHHhccCCCChhhH
Q 037164          134 LLAVLLYMAMTMLKKSEGLIATKRN--------SS-N----------AFE-------LKDQLYRIWKHYGQTRKVFNKGY  187 (250)
Q Consensus       134 ~~~~l~~~a~~~~~~~~~~~~~~~~--------~~-~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~  187 (250)
                      .-+.++++|..+|++.......-..        +- .          .|.       +.+.+.++.+.+-..  .|+..|
T Consensus      1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y 1136 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNY 1136 (1666)
T ss_pred             hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHH
Confidence            2223388888888776522110000        00 0          010       222233333322211  456778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                      ..+|....+.|.+++-.+.+...+++...|.  +=+.||-+|++.+++.+.+.++
T Consensus      1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence            8888888888888888888876666655554  4456888888888887777664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.64  E-value=0.16  Score=42.00  Aligned_cols=88  Identities=6%  Similarity=-0.097  Sum_probs=69.4

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      .+.+.|++++|.++|++.....|+. ..|.           .++|+..+++..+.+ +.+...|..+-.+|...|++++|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            4567899999999999988774443 3333           899999999998864 45678899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhH
Q 037164           81 DALMLEMEEKSINGDQFTLGIRP  103 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li  103 (250)
                      ...|++..+  +.|+......++
T Consensus        90 ~~~~~~al~--l~P~~~~~~~~l  110 (356)
T PLN03088         90 KAALEKGAS--LAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHH--hCCCCHHHHHHH
Confidence            999998776  456665555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.50  E-value=1.1  Score=36.45  Aligned_cols=75  Identities=15%  Similarity=-0.028  Sum_probs=57.1

Q ss_pred             chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164          165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      ..+....+-++-++...|+...|...|.+|+..+++++-+++-..    ..  ++.-|...+.+|.+.|+..+|..++.+
T Consensus       189 ~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  189 EMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASKYIPK  262 (319)
T ss_pred             HCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence            455555666665555558889999999999999999987775432    22  358899999999999999999888776


Q ss_pred             H
Q 037164          245 A  245 (250)
Q Consensus       245 m  245 (250)
                      +
T Consensus       263 ~  263 (319)
T PF04840_consen  263 I  263 (319)
T ss_pred             C
Confidence            4

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.41  E-value=0.075  Score=32.48  Aligned_cols=56  Identities=7%  Similarity=-0.142  Sum_probs=46.8

Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ..|.+.+++++|.++++.+... -+.+...|...-.++.+.|++++|.+.|+.....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5688899999999999998876 2336677777889999999999999999988653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.31  E-value=0.74  Score=33.40  Aligned_cols=65  Identities=8%  Similarity=-0.101  Sum_probs=51.7

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ....|..+...+...|++++|...|+......-.|  ...+|..+-..+...|++++|.+.++....
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35667888888888999999999999876543222  235788888999999999999999988764

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.18  E-value=0.29  Score=31.74  Aligned_cols=71  Identities=8%  Similarity=0.015  Sum_probs=49.3

Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK  148 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~  148 (250)
                      |.=++.+-++.+-..++.|++....+-+++|-+.+|+..|.++|+-.+.+  +..+..+|..++++..-.+.+
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lqeikp~l~E   92 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQEIKPTLKE   92 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHHHHhHHHHH
Confidence            33356666777777888888888888888888888888888888877643  222444665555544444444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.10  E-value=0.62  Score=40.95  Aligned_cols=20  Identities=20%  Similarity=0.150  Sum_probs=11.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 037164          192 GLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~  211 (250)
                      .+|.+.|+-.+|..+++++.
T Consensus       825 kAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  825 KAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             HHHHHhcchHHHHHHHHHhh
Confidence            35555555566666655554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.07  E-value=0.38  Score=35.11  Aligned_cols=70  Identities=17%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHCCCCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChh
Q 037164           42 VGKAEMVVQEMKDMGFAR--RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIH  113 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~  113 (250)
                      .++|...|++..+.+-.+  ....+..+..+|.+.|++++|...+.+..+.  .| +...+..+...+...|+..
T Consensus        51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603         51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKA  123 (172)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChH
Confidence            788888888887643222  2468899999999999999999999987764  34 4556666777887777643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.06  E-value=0.43  Score=43.09  Aligned_cols=54  Identities=17%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      |-+++...|-.|++++|-++-++-.      |....-.|-+.|-..|++.+|..+|.+..
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4455556666666666666655422      44555567777777777777777776654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.05  E-value=2.5  Score=37.96  Aligned_cols=82  Identities=5%  Similarity=-0.036  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ..++...+++..+.+- .|+.+---+---|+..++.+.|+...++..+.+=..+...|..|.-.+...+++.+|+.+.+.
T Consensus       460 h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            6777888888877642 222222223334677888999999999888876666888888888888888999998888876


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       539 al~  541 (799)
T KOG4162|consen  539 ALE  541 (799)
T ss_pred             HHH
Confidence            544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=94.99  E-value=1.3  Score=41.09  Aligned_cols=59  Identities=5%  Similarity=-0.120  Sum_probs=38.3

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKI  118 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~  118 (250)
                      +.+...+..|+..|...+++++|.++.++-.+  ..|+. ..|-.+-..+...++.+.+.-+
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv   87 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL   87 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh
Confidence            34567788888888888888888888885444  33443 2333333366667777666666

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.95  E-value=0.55  Score=32.15  Aligned_cols=79  Identities=11%  Similarity=-0.093  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---c-hhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---Q-FTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~-~ty~~li~~~~~~~~~~~a  115 (250)
                      .++|+.+|++-.+.|+...  ...+-.+-..+...|++++|..++++.....  |+   . .....+--++...|+.++|
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHHHH
Confidence            4555555555555554433  2334445555666666666666666654431  22   1 1111122355556666666


Q ss_pred             HHHHHHH
Q 037164          116 DKIINMT  122 (250)
Q Consensus       116 ~~~~~~m  122 (250)
                      .+++-..
T Consensus        95 l~~~l~~  101 (120)
T PF12688_consen   95 LEWLLEA  101 (120)
T ss_pred             HHHHHHH
Confidence            6665443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.93  E-value=0.56  Score=38.10  Aligned_cols=109  Identities=15%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH
Q 037164           97 FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY  176 (250)
Q Consensus        97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (250)
                      .+.+..|.-+...|+...|.++-++.    ++ ||..-|-.-+.                     ++...++.+++.++.
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~---------------------aLa~~~~w~eL~~fa  231 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIK---------------------ALAENKDWDELEKFA  231 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHH---------------------HHHhcCCHHHHHHHH
Confidence            34555577777788887777775554    23 33322211000                     222333444444444


Q ss_pred             hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       177 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      +.  ..++..|-.++..|.+.|+..+|..++.++          .+..-+..|.++|++.+|.+.--
T Consensus       232 ~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  232 KS--KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             hC--CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence            43  245688999999999999999998888762          23667888888888888876643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.88  E-value=0.15  Score=42.79  Aligned_cols=66  Identities=8%  Similarity=-0.039  Sum_probs=55.5

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      +.+...++.+-.+|.+.|++++|...|++-.+  +.|+..    +|..+-.+|.+.|++++|...+++....
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45678899999999999999999999997555  457653    5899999999999999999999998764

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.87  E-value=0.21  Score=32.72  Aligned_cols=69  Identities=7%  Similarity=-0.016  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS  149 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~  149 (250)
                      +..+-++.+-..++.|++.+..+.+.+|.+.+|+..|.++|+-++..  +.+...+|..++++..-+++++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqElkPtl~EL   96 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQELKPTLEEL   96 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHHHhhHHHHh
Confidence            56666677777788888888888888888888888888888887654  3333336666655555554443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.87  E-value=0.51  Score=34.25  Aligned_cols=78  Identities=13%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHCCCCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHH-------hcCC
Q 037164           42 VGKAEMVVQEMKDMGFAR--RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYA-------AASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~-------~~~~  111 (250)
                      .++|...|++.....-.|  ...+|..+-.+|...|++++|...++...+.  .| ...+++.+...+.       +.|+
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~  128 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGD  128 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHccc
Confidence            788888888887653222  2358899999999999999999999987764  33 3455667777777       7778


Q ss_pred             hhHHHHHHHH
Q 037164          112 IHGMDKIINM  121 (250)
Q Consensus       112 ~~~a~~~~~~  121 (250)
                      ++.|...+++
T Consensus       129 ~~~A~~~~~~  138 (168)
T CHL00033        129 SEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHH
Confidence            7766555554

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.78  E-value=0.9  Score=36.50  Aligned_cols=94  Identities=11%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHCC---CCccHHHHHHHHHHHhhcCCh----hhHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCC--
Q 037164           42 VGKAEMVVQEMKDMG---FARRTIYCYIMMILNYLTGNR----EKIDALMLEMEEKSINGDQF-TLGIRPSAYAAASD--  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~---~~p~~~~y~~li~~~~~~g~~----~~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~--  111 (250)
                      +.+|.++|+.|++..   -.++-.++.+|+..  ...++    +.++.+++.+.+.|+..+.. .+.+-|-+++...+  
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            666666666665543   12344455555443  33332    34556666666666655433 22222222222221  


Q ss_pred             -hhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164          112 -IHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus       112 -~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                       +.++.++++.+++. |+++....|..+
T Consensus       197 ~v~r~~~l~~~l~~~-~~kik~~~yp~l  223 (297)
T PF13170_consen  197 KVARVIELYNALKKN-GVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHc-CCccccccccHH
Confidence             23455556666665 666555555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.67  E-value=0.59  Score=37.01  Aligned_cols=96  Identities=14%  Similarity=-0.029  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|+..|.+..+. .+-|++-|..--.+|++.|.++.|.+=.+.-.+  +.|. ..+|..|=.+|...|++++|.+-|+
T Consensus        97 Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   97 YQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            89999999999987 356788888899999999999999887774443  4443 3678889999999999999999998


Q ss_pred             HHhhCCCCCccHHHHHHHHHHHH
Q 037164          121 MTESNPQMVLDFNLLAVLLYMAM  143 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l~~~a~  143 (250)
                      +..   .+.|+..+|-.-++.|.
T Consensus       174 KaL---eldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  174 KAL---ELDPDNESYKSNLKIAE  193 (304)
T ss_pred             hhh---ccCCCcHHHHHHHHHHH
Confidence            877   57888887733333333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.67  E-value=0.79  Score=38.56  Aligned_cols=144  Identities=9%  Similarity=0.015  Sum_probs=86.3

Q ss_pred             hhcCChhhHHHHHHHHHhcCCCCCch------hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-------
Q 037164           72 YLTGNREKIDALMLEMEEKSINGDQF------TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-------  138 (250)
Q Consensus        72 ~~~g~~~~a~~~~~~m~~~gi~p~~~------ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-------  138 (250)
                      -+.+++.++.++|...-.. +..+.+      .-+-+|++|. ..+++.+...+....+..|-.+-...|-.+       
T Consensus        17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~   94 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE   94 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence            3566777787777776544 222222      2244566666 456777777777775544555555555555       


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      ..+|.+.|............   .            .+.....   +|-..=+..++++.+.|.+.++..++++|...=.
T Consensus        95 ~~kal~~ls~w~~~~~~~~~---~------------~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll  159 (549)
T PF07079_consen   95 YRKALQALSVWKEQIKGTES---P------------WLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL  159 (549)
T ss_pred             HHHHHHHHHHHHhhhccccc---c------------hhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            66666666665544322222   0            0111111   2233346778999999999999999999875544


Q ss_pred             C----CCCcchHHHHHHHHhc
Q 037164          216 P----YDFGLPSSLIDAHCKN  232 (250)
Q Consensus       216 ~----~~~~~~~~li~~~~~~  232 (250)
                      +    .++.+|+.++-.+.++
T Consensus       160 krE~~w~~d~yd~~vlmlsrS  180 (549)
T PF07079_consen  160 KRECEWNSDMYDRAVLMLSRS  180 (549)
T ss_pred             hhhhcccHHHHHHHHHHHhHH
Confidence            4    7888898866666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.63  E-value=0.76  Score=41.65  Aligned_cols=60  Identities=5%  Similarity=-0.068  Sum_probs=41.5

Q ss_pred             cHHHHHHHHH--HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           60 RTIYCYIMMI--LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        60 ~~~~y~~li~--~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      |..|-..+++  .|.-.|+.+.|.+-++.++      +...|..|.+.|.+..++|-|.-++.-|...
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a  786 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA  786 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh
Confidence            4556666664  3667788888877777555      3567888888888888888777776666443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=1.6  Score=33.72  Aligned_cols=72  Identities=14%  Similarity=0.063  Sum_probs=43.0

Q ss_pred             HhhhccChhHHHHHHHHhhhh-hccccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKL-LRQCLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE   86 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~   86 (250)
                      +|-...++++|-..+.+..+. -.|...|.    .+.|.-+.++|.+.  +--+.-|+--+.+|...|.++.|---++.
T Consensus        40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleK  116 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEK  116 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence            444556666666655555433 34444555    66666677777653  22344567777777777777766555554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.50  E-value=2.9  Score=36.16  Aligned_cols=166  Identities=9%  Similarity=0.030  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHC-CCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           43 GKAEMVVQEMKDM-GFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        43 ~~A~~~~~~m~~~-~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      +..-+.+++.+.. ...|+ .+|-.+|+.--|..-++.|..+|.+..+.+..+ .+++++++|.-|| ++|.+.|.++|+
T Consensus       348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            3444455555443 23444 678888888888888999999999999998888 8999999999888 788999999999


Q ss_pred             HHhhCCCCCccHHH-HHHH------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHH
Q 037164          121 MTESNPQMVLDFNL-LAVL------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGL  193 (250)
Q Consensus       121 ~m~~~~g~~~~~~~-~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  193 (250)
                      --....|-.|-... |...      -..+..+|++......+-                        ......|..+|+-
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~------------------------~ks~~Iw~r~l~y  481 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA------------------------DKSKEIWDRMLEY  481 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh------------------------hhhHHHHHHHHHH
Confidence            64433255444221 1000      222333333333111000                        0234678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC---CCCCCcchHHHHHHHHhcCC
Q 037164          194 LLKLDDVKGAEKTLRNWTSKN---LPYDFGLPSSLIDAHCKNGL  234 (250)
Q Consensus       194 ~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~  234 (250)
                      =++.|++..+.++=+++...-   ..+....-..+++-|--.+.
T Consensus       482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~  525 (656)
T KOG1914|consen  482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL  525 (656)
T ss_pred             HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence            888888888888877765321   22222334444555544443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.46  E-value=3.1  Score=36.36  Aligned_cols=140  Identities=11%  Similarity=-0.043  Sum_probs=85.3

Q ss_pred             cCCCCCchhHhhhHHHHHhcCC-----hhHHHHHHHHHhhCCCCCccH-HHHHHHHHHHHHHHHHHHhhhhccCCchhhh
Q 037164           90 KSINGDQFTLGIRPSAYAAASD-----IHGMDKIINMTESNPQMVLDF-NLLAVLLYMAMTMLKKSEGLIATKRNSSNAF  163 (250)
Q Consensus        90 ~gi~p~~~ty~~li~~~~~~~~-----~~~a~~~~~~m~~~~g~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      .+.+.|...|...+.+.....+     ...|..+|++..+   ..|+. ..+..+   +.-.  .......+  .     
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~l---a~~~--~~~~~~~~--~-----  395 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEK---ALAD--IVRHSQQP--L-----  395 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHH---HHHH--HHHHhcCC--c-----
Confidence            3456677888888877654332     6678888888764   34542 222221   0000  00011111  0     


Q ss_pred             cchhHHHHHHHHHhc---c--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164          164 ELKDQLYRIWKHYGQ---T--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA  238 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  238 (250)
                       ....+..+.+....   .  .+.+...|.++--.....|++++|...+++.....  |+...|..+-..|...|+.++|
T Consensus       396 -~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA  472 (517)
T PRK10153        396 -DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLA  472 (517)
T ss_pred             -cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHH
Confidence             11222233333222   1  12334667666555666799999999999988654  5778899999999999999999


Q ss_pred             HHHHHHHHh
Q 037164          239 QSLINHAET  247 (250)
Q Consensus       239 ~~~~~~m~~  247 (250)
                      ...+++..+
T Consensus       473 ~~~~~~A~~  481 (517)
T PRK10153        473 ADAYSTAFN  481 (517)
T ss_pred             HHHHHHHHh
Confidence            999988764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.44  E-value=0.54  Score=37.47  Aligned_cols=113  Identities=14%  Similarity=0.028  Sum_probs=67.9

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccc-cccchhHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHhhcCChhhHHHH
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFGVGKAEMVVQEMKDM----GFA-RRTIYCYIMMILNYLTGNREKIDAL   83 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~~~~~g~~~~a~~~   83 (250)
                      .++.|.+.|++..|-+.+..+-....+. ..  .++|.+.|++..+.    |-+ .-..++..+...+.+.|++++|.++
T Consensus       100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~  177 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI  177 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4566777777777777777766542222 11  45555555554332    211 1135567778888999999999999


Q ss_pred             HHHHHhcCCCC-----Cch-hHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           84 MLEMEEKSING-----DQF-TLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        84 ~~~m~~~gi~p-----~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      |++....-...     +.. .|-..+-++...||...|.+.+++...
T Consensus       178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99876643322     222 223334466778899999999998764

>PLN02789 farnesyltranstransferase

Probab=94.41  E-value=2.3  Score=34.64  Aligned_cols=193  Identities=7%  Similarity=-0.130  Sum_probs=103.3

Q ss_pred             cChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCc
Q 037164           18 HGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQ   96 (250)
Q Consensus        18 ~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~   96 (250)
                      +++.+|..+|..+.....     ..++|+.+..+..+.+ +-+..+|+..-.++...| ++++++.+++.+.+.+- .+.
T Consensus        34 ~~~~~a~~~~ra~l~~~e-----~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-kny  106 (320)
T PLN02789         34 PEFREAMDYFRAVYASDE-----RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNY  106 (320)
T ss_pred             HHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cch
Confidence            555666666666554311     1467777777776652 234455665555666666 56778888877766522 244


Q ss_pred             hhHhhhHHHHHhcCCh--hHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcc
Q 037164           97 FTLGIRPSAYAAASDI--HGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFEL  165 (250)
Q Consensus        97 ~ty~~li~~~~~~~~~--~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
                      .+|+..--.+.+.|+.  +++..+++++...  -+-+...|+..         ++++++.+.++.+..            
T Consensus       107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------------  172 (320)
T PLN02789        107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------------  172 (320)
T ss_pred             HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------------
Confidence            5566554444455542  5566666666542  12233333322         333333333333222            


Q ss_pred             hhHHHHHHHHHhccCCCChhhHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC----C
Q 037164          166 KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL---DD----VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG----L  234 (250)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~  234 (250)
                                     +.+...|+...-.+.+.   |.    .+.+.....++... .+-|...|+-+-..+...+    +
T Consensus       173 ---------------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~  236 (320)
T PLN02789        173 ---------------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVS  236 (320)
T ss_pred             ---------------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCccccc
Confidence                           12334454444333333   22    24566666566533 4567888998888887733    3


Q ss_pred             hhHHHHHHHHHHh
Q 037164          235 LEKAQSLINHAET  247 (250)
Q Consensus       235 ~~~a~~~~~~m~~  247 (250)
                      ..+|.+++.+..+
T Consensus       237 ~~~~~~~~~~~~~  249 (320)
T PLN02789        237 DPEVSSVCLEVLS  249 (320)
T ss_pred             chhHHHHHHHhhc
Confidence            4567777776554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.28  E-value=2.9  Score=35.43  Aligned_cols=62  Identities=11%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcC-CCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKS-INGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      ..+|-..|+.-.+..-++.|..+|-+..+.| +.+++..|+++|..++ .||...|-++|+--.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl  459 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL  459 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH
Confidence            3667888888888888999999999999999 6689999999998887 788999999998643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=2  Score=36.82  Aligned_cols=133  Identities=11%  Similarity=-0.028  Sum_probs=90.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccc----hhHHHHHHHHHHHCCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG----VGKAEMVVQEMKDMGFARRT-IYCYIMMILNYLTGNREKIDALMLEM   87 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~----~~~A~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m   87 (250)
                      +|.+.++.+.|.++|.+......++...+    .+++....+...-.+  |.. .-.-.=-+.+-+.|++..|.+.+.++
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteA  384 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEA  384 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            67778999999999998777655544444    555555555554433  332 11222256678899999999999998


Q ss_pred             HhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH---H-----HHH--HHHHHHHHHHHHh
Q 037164           88 EEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL---L-----AVL--LYMAMTMLKKSEG  151 (250)
Q Consensus        88 ~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~---~-----~~l--~~~a~~~~~~~~~  151 (250)
                      ..++ +-|...|+..--||.+.|.+..|++--+...+   ..|++..   .     ..+  +++|.+.|.+...
T Consensus       385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8876 55788999999999999999999887655443   2344321   1     111  6667766666553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.21  E-value=2.4  Score=34.69  Aligned_cols=66  Identities=12%  Similarity=-0.011  Sum_probs=51.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY---DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ....+|..+...+.+.|.++.|...+.++...+...   ++.+.-.-...+...|+-++|...++...+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334788899999999999999999999988644222   445555566778888999999999888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.10  E-value=2.5  Score=33.97  Aligned_cols=48  Identities=8%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhH--HHHHhcCC----hhHHHHHHHHHhhC
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRP--SAYAAASD----IHGMDKIINMTESN  125 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li--~~~~~~~~----~~~a~~~~~~m~~~  125 (250)
                      +.+..+++.|++.|+.-+..+|-+-.  .......+    ..+|..+|+.|++.
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~  132 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK  132 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence            45677777888888887777775532  22222222    44577777777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.07  E-value=0.38  Score=40.47  Aligned_cols=65  Identities=14%  Similarity=-0.045  Sum_probs=53.4

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+...|+.+-.+|.+.|++++|...|++...  ..|+.    .+|..+-.+|...|+.++|...+++.++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3447888899999999999999999998764  34543    35889999999999999999999988763

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.93  E-value=3.5  Score=34.94  Aligned_cols=83  Identities=10%  Similarity=-0.004  Sum_probs=59.5

Q ss_pred             HHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164           25 IYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSIN   93 (250)
Q Consensus        25 ~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~   93 (250)
                      ++=+.|+..+.++.+|-           .++..+++++|... ++--..+|..-|++=....++..++.+|.+.....+.
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence            55566666666677666           77778888888764 4555678888888888888999999999988776554


Q ss_pred             CCchhHhhhHHHHHhcC
Q 037164           94 GDQFTLGIRPSAYAAAS  110 (250)
Q Consensus        94 p~~~ty~~li~~~~~~~  110 (250)
                        ...|...++--.+..
T Consensus       109 --ldLW~lYl~YIRr~n  123 (660)
T COG5107         109 --LDLWMLYLEYIRRVN  123 (660)
T ss_pred             --HhHHHHHHHHHHhhC
Confidence              566666555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.83  E-value=1.2  Score=30.56  Aligned_cols=59  Identities=10%  Similarity=0.016  Sum_probs=48.9

Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           67 MMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      +-.++-..|+.++|..++++-...|.....  ..+-.+-+++...|++++|..++++....
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345678899999999999999999887653  34556679999999999999999988654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.80  E-value=1.6  Score=30.45  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             ccChhHHHHHHHHhhhhhccccccc--------hhHHHHHHHHHHHCCCCccHHH--------------------HHHHH
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFFG--------VGKAEMVVQEMKDMGFARRTIY--------------------CYIMM   68 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------~~~A~~~~~~m~~~~~~p~~~~--------------------y~~li   68 (250)
                      .|.+++..++..+.... .+..-||        ...+..+|+.+..-|---|...                    .+.-+
T Consensus        15 dG~V~qGveii~k~v~S-sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~AL   93 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNS-SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLAL   93 (161)
T ss_dssp             TT-HHHHHHHHHHHHHH-S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHH
T ss_pred             hchHHHHHHHHHHHcCc-CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHH
Confidence            47778888888776654 3444555        4445556665555442223222                    24444


Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV  129 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~  129 (250)
                      ......|+-+.-.++..++.. +=+|++...-.+-++|.+.|+..++.+++++.-.. |++
T Consensus        94 d~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k  152 (161)
T PF09205_consen   94 DILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK  152 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred             HHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence            555666666777777777654 34567777778889999999999999999999887 774

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=3.4  Score=38.63  Aligned_cols=64  Identities=6%  Similarity=-0.100  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF  132 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~  132 (250)
                      ..|+.+-.+-.+.|...+|.+-|-  +    ..|+..|..+|+...++|.+++-.+.+...++. .-+|..
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyi--k----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i 1168 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYI--K----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI 1168 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHH--h----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc
Confidence            456666666666666666655443  1    136777888888888888888888777766665 555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.54  E-value=1.7  Score=34.30  Aligned_cols=81  Identities=10%  Similarity=0.022  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC---chhHhhhHHHHHhcCChhH
Q 037164           42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD---QFTLGIRPSAYAAASDIHG  114 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~---~~ty~~li~~~~~~~~~~~  114 (250)
                      .++|...|+.+.+..  |+    ...+--+-.+|...|++++|...|+.+... .+-+   ...+-.+..++...|+.++
T Consensus       159 y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        159 QDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             HHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            355666666665532  22    235667778888899999999999988754 2222   2333344567778899999


Q ss_pred             HHHHHHHHhhC
Q 037164          115 MDKIINMTESN  125 (250)
Q Consensus       115 a~~~~~~m~~~  125 (250)
                      |.++|++....
T Consensus       236 A~~~~~~vi~~  246 (263)
T PRK10803        236 AKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.49  E-value=4.7  Score=35.02  Aligned_cols=65  Identities=17%  Similarity=-0.017  Sum_probs=57.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +|......|--.|--.|++++|.+.|+.... -.|.|..+||.|-..++...+.++|..-+++.++
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            6677788888888889999999999999884 3566889999999999999999999999998875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.37  E-value=6.9  Score=36.58  Aligned_cols=80  Identities=10%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             chhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH--HHHHhcCChhHHH
Q 037164          165 LKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI--DAHCKNGLLEKAQ  239 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~  239 (250)
                      +.++...+...++...+   .|...|..+.++|...|.+..|.++|.+...  +.|+ .+|...-  -.-+..|.+.+|.
T Consensus       574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHHHH
Confidence            66667777666666543   4558888999999999999999999988653  4443 2222222  2345678888888


Q ss_pred             HHHHHHHh
Q 037164          240 SLINHAET  247 (250)
Q Consensus       240 ~~~~~m~~  247 (250)
                      ..+.....
T Consensus       651 d~l~~ii~  658 (1238)
T KOG1127|consen  651 DALGLIIY  658 (1238)
T ss_pred             HHHHHHHH
Confidence            77776553

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.30  E-value=0.67  Score=30.15  Aligned_cols=60  Identities=2%  Similarity=-0.104  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS  104 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~  104 (250)
                      ++.+-++.+...++.|++.+..+-+.+|-|.+|+..|.++|+-.+.. +..+...|.-++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            34445567777789999999999999999999999999999988754 2224446655543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.27  E-value=3.4  Score=32.80  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             chhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      +...+.++.+.+...  ..++..+-..+|..+++.++...-.++|...... +..-|..-|..+|+.-...|+..    +
T Consensus       181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~----~  256 (292)
T PF13929_consen  181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE----V  256 (292)
T ss_pred             chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH----H
Confidence            455666666666544  3377888899999999999999999999987755 66779999999999999999955    5


Q ss_pred             HHHHHhcCC
Q 037164          242 INHAETKKG  250 (250)
Q Consensus       242 ~~~m~~~g~  250 (250)
                      .++++..|+
T Consensus       257 ~~kiI~~Gh  265 (292)
T PF13929_consen  257 MRKIIDDGH  265 (292)
T ss_pred             HHHHhhCCC
Confidence            555555553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.22  E-value=0.66  Score=30.48  Aligned_cols=59  Identities=2%  Similarity=-0.115  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164           45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS  104 (250)
Q Consensus        45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~  104 (250)
                      ..+-++.+...++.|++.+..+.+.+|-|.+++..|.++|+-.+.. +.+....|.-++.
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            3344566777789999999999999999999999999999998875 3333336766654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=2.2  Score=33.43  Aligned_cols=76  Identities=12%  Similarity=-0.116  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .+.+.+..++.-.|.+.-....+.+..+..-+-++..-+.|.+.-.+.||.+.|...|+...+. .-..|..+++.+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~  253 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIM  253 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHH
Confidence            3456677777778888888888888888765667788888888889999999999999987655 333444444333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.03  E-value=0.22  Score=25.80  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=14.4

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHH
Q 037164          222 PSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       222 ~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      |+.|-..|.+.|++++|..++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455666666666666666666663

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.97  E-value=2.6  Score=30.65  Aligned_cols=38  Identities=3%  Similarity=0.033  Sum_probs=22.8

Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI  118 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~  118 (250)
                      .++++-+.+.|++|+...|..+|+.+.+.|.+....++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql   51 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL   51 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34445555566666666666667777766665544443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=1.1  Score=35.85  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHCC---CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164           42 VGKAEMVVQEMKDMG---FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI  118 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~---~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~  118 (250)
                      ++.++.++-+++..-   ..|+...+ ..+.. +-.-++++++.++..=.+.|+-||.++++.+|+.+.+.+++.+|.++
T Consensus        80 idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~v  157 (418)
T KOG4570|consen   80 IDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASV  157 (418)
T ss_pred             hhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHH
Confidence            788888888887652   33332222 22332 23446889999999888999999999999999999999999999998


Q ss_pred             HHHHhhC
Q 037164          119 INMTESN  125 (250)
Q Consensus       119 ~~~m~~~  125 (250)
                      .-.|...
T Consensus       158 vt~~~~q  164 (418)
T KOG4570|consen  158 VTEVMMQ  164 (418)
T ss_pred             HHHHHHH
Confidence            8776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.75  E-value=0.86  Score=36.12  Aligned_cols=87  Identities=7%  Similarity=-0.030  Sum_probs=65.2

Q ss_pred             hhhccChhHHHHHHHHhhhhhcccccc-c-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQCLFF-G-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID   81 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y-~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~   81 (250)
                      +.+.+++++|...+.......|+--+| .           .+.|.+=.+.....+ +--..+|..|-.+|...|++++|.
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence            567899999999999988885544444 4           456666556655543 223578999999999999999999


Q ss_pred             HHHHHHHhcCCCCCchhHhhhH
Q 037164           82 ALMLEMEEKSINGDQFTLGIRP  103 (250)
Q Consensus        82 ~~~~~m~~~gi~p~~~ty~~li  103 (250)
                      +.|+  +...+.|+..+|-.=|
T Consensus       170 ~ayk--KaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  170 EAYK--KALELDPDNESYKSNL  189 (304)
T ss_pred             HHHH--hhhccCCCcHHHHHHH
Confidence            9988  4555899998885544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.74  E-value=5.5  Score=33.78  Aligned_cols=122  Identities=11%  Similarity=0.078  Sum_probs=80.0

Q ss_pred             hhhccChhHHHHHHHHhhhhh-ccccccc----------------hhHHHHHHHHHHHCCCCccHHHHHHHHHH--Hhhc
Q 037164           14 IFEVHGVEQAEIYFDNISKLL-RQCLFFG----------------VGKAEMVVQEMKDMGFARRTIYCYIMMIL--NYLT   74 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~-~~~~~y~----------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~--~~~~   74 (250)
                      +-|.+++.+|+++|.++-... .++..+.                ++..........+.  .| ...|-.|..+  +.+.
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ   92 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence            457899999999999998773 2222222                45555555555443  23 2455555554  4678


Q ss_pred             CChhhHHHHHHHHHhc--CCCC------------CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCccHHHHHH
Q 037164           75 GNREKIDALMLEMEEK--SING------------DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLDFNLLAV  137 (250)
Q Consensus        75 g~~~~a~~~~~~m~~~--gi~p------------~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~~~~~~~  137 (250)
                      +.+++|.+.+..=.++  +-.|            |...=++.+++....|+++++..+++++...   ....-+..+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            8999999988876655  3322            2222367789999999999999999988654   133356666666


Q ss_pred             H
Q 037164          138 L  138 (250)
Q Consensus       138 l  138 (250)
                      +
T Consensus       173 ~  173 (549)
T PF07079_consen  173 A  173 (549)
T ss_pred             H
Confidence            3

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.58  E-value=0.37  Score=37.95  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHhccCC-CChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 037164          167 DQLYRIWKHYGQTRK-VFNKGYMTMMGLLLKLD----------------DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH  229 (250)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~  229 (250)
                      +-+..+++.+++.+. .|..+|+.||..+-|..                +-+-+.+++++|+..|+.||-.+-..|+.++
T Consensus        89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F  168 (406)
T KOG3941|consen   89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF  168 (406)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence            334444445555444 66677777776555543                3467899999999999999999999999999


Q ss_pred             HhcCCh
Q 037164          230 CKNGLL  235 (250)
Q Consensus       230 ~~~g~~  235 (250)
                      .+.|..
T Consensus       169 Gr~~~p  174 (406)
T KOG3941|consen  169 GRWNFP  174 (406)
T ss_pred             cccccc
Confidence            888764

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=92.38  E-value=1.7  Score=29.90  Aligned_cols=88  Identities=5%  Similarity=-0.050  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHHHhhcCChh--hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           60 RTIYCYIMMILNYLTGNRE--KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +..-|+.--.-|......|  +..+-++.+...++.|++.....-+.++-+.+|+..|.++|+-++..  +.+....|..
T Consensus        46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y  123 (149)
T KOG4077|consen   46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPY  123 (149)
T ss_pred             cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHH
Confidence            3344444444444333333  56666777777889999999999999999999999999999988763  5555556776


Q ss_pred             HHHHHHHHHHHH
Q 037164          138 LLYMAMTMLKKS  149 (250)
Q Consensus       138 l~~~a~~~~~~~  149 (250)
                      ++++..-+++++
T Consensus       124 ~v~elkpvl~EL  135 (149)
T KOG4077|consen  124 YVKELKPVLNEL  135 (149)
T ss_pred             HHHHHHHHHHHh
Confidence            766666666665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.19  E-value=0.29  Score=25.30  Aligned_cols=23  Identities=13%  Similarity=-0.039  Sum_probs=11.1

Q ss_pred             HHHHHHHHhhcCChhhHHHHHHH
Q 037164           64 CYIMMILNYLTGNREKIDALMLE   86 (250)
Q Consensus        64 y~~li~~~~~~g~~~~a~~~~~~   86 (250)
                      |+.|-..|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444555555555555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.14  E-value=6.1  Score=32.85  Aligned_cols=72  Identities=11%  Similarity=-0.007  Sum_probs=49.3

Q ss_pred             HHHHHHhhcCChhhHHHHHHHHHhcC---CCCCchhHhhhHHHHHh---cCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           66 IMMILNYLTGNREKIDALMLEMEEKS---INGDQFTLGIRPSAYAA---ASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        66 ~li~~~~~~g~~~~a~~~~~~m~~~g---i~p~~~ty~~li~~~~~---~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .|+-+|-...+++...++.+.|...-   +.-....--...-++.+   .|+.++|.+++..+... .-.+++-||..+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~  223 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL  223 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence            45556999999999999999998762   11122222233456666   89999999999995444 455666666655

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.13  E-value=1.9  Score=34.21  Aligned_cols=73  Identities=8%  Similarity=-0.109  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh----CCCCCccHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES----NPQMVLDFNLL  135 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~~  135 (250)
                      .++..++..+...|+++.+.+.++++.... +-|...|.-+|.+|.+.|+...|...|+++..    ..|+.|...+.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            567888999999999999999999988763 34889999999999999999999999998865    25888887664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.13  E-value=0.8  Score=36.26  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +++.+++.+...|+++.+...++++.. --+-|...|..|+.+|.+.|+...|...++.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~-~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIE-LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            344555555555566666666655552 2334555566666666666666666655555543

>PRK15331 chaperone protein SicA; Provisional

Probab=91.77  E-value=3.8  Score=29.69  Aligned_cols=100  Identities=11%  Similarity=-0.011  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +++|..+|.-+.-.+. -|..-|..|-.+|-..+++++|...+...-..+. -|+..+--.-.||...|+.+.|.+.|..
T Consensus        53 ~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~  130 (165)
T PRK15331         53 LDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFEL  130 (165)
T ss_pred             HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence            8899999988877553 3455677788888889999999999998666543 3555555577899999999999999998


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSE  150 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~  150 (250)
                      ....    |.   ...+.++|...++.+.
T Consensus       131 a~~~----~~---~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        131 VNER----TE---DESLRAKALVYLEALK  152 (165)
T ss_pred             HHhC----cc---hHHHHHHHHHHHHHHH
Confidence            8764    11   4444666777766655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.57  E-value=4.7  Score=34.58  Aligned_cols=78  Identities=5%  Similarity=-0.077  Sum_probs=56.0

Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC-ccHHHHHHHHHHH
Q 037164           65 YIMMILNYLTGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV-LDFNLLAVLLYMA  142 (250)
Q Consensus        65 ~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~-~~~~~~~~l~~~a  142 (250)
                      ..|-.+.-+.|+.++|.+.+.+|.+. ...-+.....+||.++...+.+.++..++.+-... ..+ ....+|+..+-++
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHHHHH
Confidence            44566677899999999999998654 33234457788999999999999999999986543 232 2346666664344


Q ss_pred             H
Q 037164          143 M  143 (250)
Q Consensus       143 ~  143 (250)
                      .
T Consensus       342 R  342 (539)
T PF04184_consen  342 R  342 (539)
T ss_pred             H
Confidence            3

The molecular function of this protein is uncertain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.56  E-value=1.3  Score=35.00  Aligned_cols=63  Identities=11%  Similarity=-0.053  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKN--LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+--+-..|...|++++|...|+.+...-  -+.....+-.+...+...|+.++|..+++.+++.
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45566688899999999999999988431  1222334444566777899999999999988763

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.50  E-value=0.39  Score=26.11  Aligned_cols=28  Identities=21%  Similarity=0.118  Sum_probs=18.7

Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +|..+-.+|.+.|++++|.+++++.++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777766653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.33  E-value=2.3  Score=31.33  Aligned_cols=77  Identities=12%  Similarity=-0.112  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      ..+..+...|++.|+.+.|.+.+.++.+....|..  ..+-.+|......+++..+...+.+......-..|+..-+-+
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            67889999999999999999999999987665543  456778889999999999999988876542233344444333

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.25  E-value=1.9  Score=37.13  Aligned_cols=95  Identities=13%  Similarity=-0.009  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHH-HHhhcCChhhHHHHHHHHHhc--CCC-CCchhHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMI-LNYLTGNREKIDALMLEMEEK--SIN-GDQFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~--gi~-p~~~ty~~li~~~~~~~~~~~a~~  117 (250)
                      ++.|.++++.+.+.  -|+...|...-. .+...|++++|.+.|+.....  ..+ .....+--+.-++.-.+++++|.+
T Consensus       249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            55566666665553  244444433332 234456666666666643221  110 112233334445555566666666


Q ss_pred             HHHHHhhCCCCCccHHHHHHH
Q 037164          118 IINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus       118 ~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .|..+.+.....+..++|...
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHH
Confidence            666654432343444444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.18  E-value=7.4  Score=33.62  Aligned_cols=140  Identities=14%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             hHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------------------HHHHHHHHHHHHhhhhccCCchhhh
Q 037164          102 RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------------------LYMAMTMLKKSEGLIATKRNSSNAF  163 (250)
Q Consensus       102 li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------------------~~~a~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +++..+=.||-+.+.+.+.+..+..++.-.......+                  .+.+.+++.++.... |+..   .|
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~---lf  269 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSA---LF  269 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcH---HH
Confidence            4444555677777777777665543444322222222                  344566666655444 3332   22


Q ss_pred             c--------chhHHHHHHHHHhccCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 037164          164 E--------LKDQLYRIWKHYGQTRK-------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDA  228 (250)
Q Consensus       164 ~--------~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  228 (250)
                      .        ..++++++.+.+.....       .....+--+.-++.-..++++|.+.|..+.+.. ..+..+|.-+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            2        55556666666553211       122333344456777788888888888887532 2233333333333


Q ss_pred             -HHhcCCh-------hHHHHHHHHHH
Q 037164          229 -HCKNGLL-------EKAQSLINHAE  246 (250)
Q Consensus       229 -~~~~g~~-------~~a~~~~~~m~  246 (250)
                       +...|+.       ++|..+|.+..
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHH
Confidence             3335666       77777776653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.17  E-value=6.5  Score=31.27  Aligned_cols=108  Identities=10%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             hhccChhHHHHHHHHhhhhh--cccc--------ccc------------------hhHHHHHHHH---HHHCCCCcc---
Q 037164           15 FEVHGVEQAEIYFDNISKLL--RQCL--------FFG------------------VGKAEMVVQE---MKDMGFARR---   60 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~--~~~~--------~y~------------------~~~A~~~~~~---m~~~~~~p~---   60 (250)
                      -+.|+++.|..++.+.+...  .++.        .|+                  +++|.++++.   +.+  ..|+   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~--~~~~~~e   81 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK--LSPDGSE   81 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc--cCCcHHH
Confidence            35677778888877766542  1111        222                  6777777755   322  2333   


Q ss_pred             --HHHHHHHHHHHhhcCChh---hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           61 --TIYCYIMMILNYLTGNRE---KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        61 --~~~y~~li~~~~~~g~~~---~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                        ..+...|+.+|...+..+   +|.++++.+.+. ..--+.+|-.-|..+.+.++.+++.+++.+|...
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence              356788888888887765   455566666443 2222444445566777789999999999998775

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.72  E-value=10  Score=32.68  Aligned_cols=57  Identities=18%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          189 TMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      .+-.++-+.|+.++|.+.+++|.+.... -...+...|++++...+.+.++..++.+-
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            4445666778888888888887643222 23456777888888888888888877664

The molecular function of this protein is uncertain.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.55  E-value=1.1  Score=40.17  Aligned_cols=95  Identities=13%  Similarity=0.033  Sum_probs=53.2

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      .+.+--..+.|.+|..+++.+........-|.           .+.|+++|-+-         ..++.-|..|.+.|+|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence            34455566777777777777765522222222           66777766543         35667778888888888


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHH
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a  115 (250)
                      .|.++-.+.  +|-...++.|-+-..-.-+.|++.+|
T Consensus       809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~ea  843 (1636)
T KOG3616|consen  809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEA  843 (1636)
T ss_pred             HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhh
Confidence            888776643  33333344443333333333333333

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=90.44  E-value=6.7  Score=36.66  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          218 DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       218 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |...|..|.++|.++|++..|.++|.++..
T Consensus       595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  595 DYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            888999999999999999999999987653

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.87  E-value=1  Score=36.09  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh-----hccccccc---------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL-----LRQCLFFG---------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT   74 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~-----~~~~~~y~---------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~   74 (250)
                      ..++.-....+++++..++=.+++.     .++...|.         +++++.+...=.+.|+-||-.+++.||..+.+.
T Consensus        69 ~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~  148 (418)
T KOG4570|consen   69 RLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK  148 (418)
T ss_pred             hhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence            3445555567888888887776654     23333333         899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhcCC
Q 037164           75 GNREKIDALMLEMEEKSI   92 (250)
Q Consensus        75 g~~~~a~~~~~~m~~~gi   92 (250)
                      +++.+|.++.-.|.....
T Consensus       149 ~n~~~aa~vvt~~~~qe~  166 (418)
T KOG4570|consen  149 ENYKDAASVVTEVMMQEA  166 (418)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            999999999888766533

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.70  E-value=7.2  Score=30.62  Aligned_cols=60  Identities=12%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEK----SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      .|+.-+.. .+.|++..|..-|....+.    -+.||...|  |-.++...|++++|..+|..+.+.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~  207 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKD  207 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHh
Confidence            47766654 4667799999999988765    356677777  889999999999999999888664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.58  E-value=0.79  Score=24.86  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSS  224 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  224 (250)
                      +|..+-..|...|++++|+++|++..+. .+-|...|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHH
Confidence            4677889999999999999999999864 2334444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.27  E-value=1.1  Score=23.51  Aligned_cols=26  Identities=15%  Similarity=-0.049  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEM   87 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m   87 (250)
                      .+++.|-..|...|++++|..++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence            35555555666666666666665554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=89.18  E-value=5.8  Score=27.68  Aligned_cols=82  Identities=10%  Similarity=-0.071  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCch---hHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SINGDQF---TLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~---ty~~li~~~~~~~~~~~a~~  117 (250)
                      ++.|++.|.+.... .+-+...||.-..++--.|+.++|+.=+++-.+. |-+ .-.   .|.---..|...|+.+.|..
T Consensus        59 Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   59 LDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             hHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchHHHHH
Confidence            56666666665554 4456677787777887778888777777765553 222 211   22222345666777777777


Q ss_pred             HHHHHhhC
Q 037164          118 IINMTESN  125 (250)
Q Consensus       118 ~~~~m~~~  125 (250)
                      =|+..-+-
T Consensus       137 DFe~AA~L  144 (175)
T KOG4555|consen  137 DFEAAAQL  144 (175)
T ss_pred             hHHHHHHh
Confidence            77665444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.01  E-value=4.3  Score=32.30  Aligned_cols=81  Identities=11%  Similarity=0.001  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG---NREKIDALMLEMEEKSINGDQF-TLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~~~~a~~  117 (250)
                      ...|..-|.+..+. -.+|...+..+-.++....   ...++..+|++....  .|+.. +-..|-..+...|++.+|..
T Consensus       172 ~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         172 ASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             hhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHH
Confidence            66677777766654 2455666666665543322   234778888876654  44444 44444588888888888888


Q ss_pred             HHHHHhhC
Q 037164          118 IINMTESN  125 (250)
Q Consensus       118 ~~~~m~~~  125 (250)
                      .|+.|...
T Consensus       249 ~Wq~lL~~  256 (287)
T COG4235         249 AWQMLLDL  256 (287)
T ss_pred             HHHHHHhc
Confidence            88888764

>PRK15331 chaperone protein SicA; Provisional

Probab=88.95  E-value=7.1  Score=28.32  Aligned_cols=82  Identities=7%  Similarity=-0.158  Sum_probs=55.8

Q ss_pred             chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ..|+++++..+|+-.   ...+..-|..|-.++-..+++++|...|......+. -|+..+--+-.+|...|+.+.|...
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence            444444444444333   334455566666777778899999999988765442 4555566677888899999999998


Q ss_pred             HHHHHh
Q 037164          242 INHAET  247 (250)
Q Consensus       242 ~~~m~~  247 (250)
                      |....+
T Consensus       128 f~~a~~  133 (165)
T PRK15331        128 FELVNE  133 (165)
T ss_pred             HHHHHh
Confidence            887665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.91  E-value=0.88  Score=23.90  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=11.0

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHH
Q 037164          222 PSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       222 ~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      ++.|-..|...|++++|..++++.
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHH
Confidence            344444444455555555444444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.69  E-value=0.23  Score=34.96  Aligned_cols=74  Identities=5%  Similarity=-0.044  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ++....+++.+...+-..+....+.++..|++.+..++..++++       ..+..-...++..|-+.|.++++.-++.+
T Consensus        23 ~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~   95 (143)
T PF00637_consen   23 PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLYEEAVYLYSK   95 (143)
T ss_dssp             GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchHHHHHHHHHH
Confidence            34444445555444333445555555555555555555555555       11122334445555555555555555544


Q ss_pred             H
Q 037164          122 T  122 (250)
Q Consensus       122 m  122 (250)
                      +
T Consensus        96 ~   96 (143)
T PF00637_consen   96 L   96 (143)
T ss_dssp             C
T ss_pred             c
Confidence            4

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.29  E-value=14  Score=30.86  Aligned_cols=103  Identities=10%  Similarity=-0.014  Sum_probs=72.9

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI   92 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi   92 (250)
                      .|.|.|++..|..-|+..............++.... .       ..-..+++.|..+|.+.+.+..|++..+.....+ 
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~-~-------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-  287 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKA-E-------ALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-  287 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHH-H-------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-
Confidence            677888888888888887766444444443222111 1       1234678889999999999999999999776652 


Q ss_pred             CCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ++|+-..--=-.++...|+++.|...|+++.+
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            23444444445788889999999999999975

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.29  E-value=5.5  Score=29.91  Aligned_cols=73  Identities=15%  Similarity=0.014  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc---CCCCCchhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK---SINGDQFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---gi~p~~~ty~~li~~~~~~~~~~~a  115 (250)
                      =+.|.+.|-++...+.--++..--.|..-|. ..|.+++..++-...+.   +=.+|+..+.+|.+.|-+.++++.|
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            5778888888887776666666666555555 66788888888776542   3356778888888888888887776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.25  E-value=0.66  Score=23.68  Aligned_cols=24  Identities=13%  Similarity=-0.025  Sum_probs=16.7

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKID   81 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~   81 (250)
                      +-|...|+.|-..|...|++++|.
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445677777777777777777664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.02  E-value=6.1  Score=33.83  Aligned_cols=74  Identities=16%  Similarity=0.019  Sum_probs=49.4

Q ss_pred             chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164          165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      +.|+++.+.+..++.  .+...|..|-+...+.|+++-|++.|++..         -|..|+-.|.-.|+.+.-.++.+.
T Consensus       330 ~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  330 QLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence            667777777776666  356688888888888888888888887743         245566666666666666666555


Q ss_pred             HHhcC
Q 037164          245 AETKK  249 (250)
Q Consensus       245 m~~~g  249 (250)
                      ...+|
T Consensus       399 a~~~~  403 (443)
T PF04053_consen  399 AEERG  403 (443)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            55443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.76  E-value=12  Score=33.53  Aligned_cols=59  Identities=7%  Similarity=0.055  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhcCChh--hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNRE--KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      +.-|++-=.+|.+..+..  +...=+++|+++|-.|+...   +...|+-.|.+.+|.++|.+-
T Consensus       598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            345666667887776654  44455667888888888754   345677788888888888664

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=87.66  E-value=0.75  Score=31.87  Aligned_cols=28  Identities=14%  Similarity=0.023  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILN   71 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~   71 (250)
                      -..|..+|.+|++.|-+||  .|+.|+...
T Consensus       111 k~DaY~VF~kML~~G~pPd--dW~~Ll~~a  138 (140)
T PF11663_consen  111 KTDAYAVFRKMLERGNPPD--DWDALLKEA  138 (140)
T ss_pred             CCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence            6789999999999999998  788888754

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=87.63  E-value=10  Score=28.54  Aligned_cols=159  Identities=14%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCC--CCCchhHhhhHHHHHhcCChhHHHHHHHHHhh-CCCCCccHHHHHHH-------
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSI--NGDQFTLGIRPSAYAAASDIHGMDKIINMTES-NPQMVLDFNLLAVL-------  138 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi--~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~~~~l-------  138 (250)
                      ..+.+.|++++|.+.|+.+...--  +--....-.+..++.+.|+++.|...+++... .|+.+--...+-.+       
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            445677888888888888776511  01112334456788888888888888887643 32222111111111       


Q ss_pred             -------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164          139 -------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK  205 (250)
Q Consensus       139 -------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  205 (250)
                                   ..+|...|+++.... |++.         -+.++-..+......-...--.+..-|.+.|....|..
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~---------y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELIKRY-PNSE---------YAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHHHH--TTST---------THHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred             CccchhcccChHHHHHHHHHHHHHHHHC-cCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence                         122333333333222 2222         11111111111100001111235568999999999999


Q ss_pred             HHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHH
Q 037164          206 TLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQ  239 (250)
Q Consensus       206 ~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~  239 (250)
                      -++.+...  -|++    ...-.|+.+|.+.|..+.|.
T Consensus       163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99998854  2333    34578889999999887554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.54  E-value=2.3  Score=31.37  Aligned_cols=62  Identities=15%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ..+..+.+-|++.|+.+.|.+.|.++......+.  ...+-.+|+.....|++..+...+.+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4566677777777777777777777776655443  3345667777777777777777666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=87.03  E-value=25  Score=32.53  Aligned_cols=79  Identities=10%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHH--hhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILN--YLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      ..+|.....++.+.  -|| ..|...+.++  .|.|..++|..+++....-+.. |..|..++-.+|.+.+..++|..+|
T Consensus        25 fkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   25 FKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence            78888888888665  266 4555666664  7899999999999988877666 8899999999999999999999999


Q ss_pred             HHHhh
Q 037164          120 NMTES  124 (250)
Q Consensus       120 ~~m~~  124 (250)
                      +....
T Consensus       101 e~~~~  105 (932)
T KOG2053|consen  101 ERANQ  105 (932)
T ss_pred             HHHHh
Confidence            99864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.68  E-value=13  Score=29.22  Aligned_cols=82  Identities=10%  Similarity=0.023  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHCC----CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCC-CchhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMG----FARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SING-DQFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~----~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p-~~~ty~~li~~~~~~~~~~~a  115 (250)
                      ...|..-|....+..    +.||  .+-=|-.++...|++++|..+|..+.+. +=.| -+..+--|-.+..+.|+.++|
T Consensus       157 y~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A  234 (262)
T COG1729         157 YAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA  234 (262)
T ss_pred             HHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence            355555555555431    2344  3444778899999999999999988764 2222 224556677889999999999


Q ss_pred             HHHHHHHhhC
Q 037164          116 DKIINMTESN  125 (250)
Q Consensus       116 ~~~~~~m~~~  125 (250)
                      ..+|++..+.
T Consensus       235 ~atl~qv~k~  244 (262)
T COG1729         235 CATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.63  E-value=25  Score=31.98  Aligned_cols=113  Identities=7%  Similarity=-0.073  Sum_probs=62.4

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh-hccccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL-LRQCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL   73 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~-~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~   73 (250)
                      .+|+-+...|.+..|.++-..+... ..+...|.              -+.+..+=+++... ..|. .+|..+..--..
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~-iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPG-ISYAAIARRAYQ  519 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCc-eeHHHHHHHHHh
Confidence            5677777778888887776655443 11223333              22222233333322 3333 667777777778


Q ss_pred             cCChhhHHHHHHHHHhcCC----CCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           74 TGNREKIDALMLEMEEKSI----NGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        74 ~g~~~~a~~~~~~m~~~gi----~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .|+++.|..+++.=...+-    --+..-+..-+.-..++||.+-...++-.+.
T Consensus       520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk  573 (829)
T KOG2280|consen  520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK  573 (829)
T ss_pred             cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            8999988888874222211    1123334555666666666666555554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.17  E-value=1.6  Score=23.84  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=11.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 037164          225 LIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       225 li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |-.+|...|+.+.|..++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            33455555555555555555443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=85.75  E-value=12  Score=27.66  Aligned_cols=67  Identities=10%  Similarity=0.045  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHCCCCcc--HHH-----HHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164           42 VGKAEMVVQEMKDMGFARR--TIY-----CYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~--~~~-----y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~  111 (250)
                      ++.|..+|+.+.+.--.|.  ...     --..+..|.+.|.+++|.++++...+   .|+......-+..-.+.+|
T Consensus        85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd  158 (200)
T cd00280          85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD  158 (200)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence            8999999999876532331  111     22334568889999999999988766   4666666555555555444

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.27  E-value=2.1  Score=21.36  Aligned_cols=27  Identities=22%  Similarity=0.037  Sum_probs=14.9

Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +|..+-..|...|++++|...|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344555556666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.05  E-value=1  Score=31.65  Aligned_cols=125  Identities=6%  Similarity=-0.055  Sum_probs=77.8

Q ss_pred             HHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----HHH
Q 037164           66 IMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----LYM  141 (250)
Q Consensus        66 ~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----~~~  141 (250)
                      .+|..+.+.+.++...++++.+...+-.-+....+.++..|++.++.++..++++...   ...++...-..-    .++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence            4577788899999999999999987766778889999999999999899998887322   333332221111    677


Q ss_pred             HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 037164          142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD  199 (250)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  199 (250)
                      +.-++.++......-.    ++...++..++++..+..  .+...|..+++.|...+.
T Consensus        89 a~~Ly~~~~~~~~al~----i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   89 AVYLYSKLGNHDEALE----ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHCCTTHTTCSS----TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHcccHHHHHH----HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence            7777776552221100    111333444444333333  456777777777765554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=84.76  E-value=1.3  Score=30.71  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=29.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 037164          193 LLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAH  229 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~  229 (250)
                      .+.+.|.-.+|..+|++|...|.+||  .|+.|+..+
T Consensus       104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a  138 (140)
T PF11663_consen  104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA  138 (140)
T ss_pred             chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence            45666888899999999999999996  588888764

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.72  E-value=11  Score=30.00  Aligned_cols=65  Identities=11%  Similarity=-0.054  Sum_probs=41.4

Q ss_pred             CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-CCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-SINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      -.++..+--.+|..+++.++|.+..++++.-... +-.-|..-|...|+...+.||..-+.+++++
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            3455566666667777777777777776655443 4444666677777777777776666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.57  E-value=3.3  Score=20.61  Aligned_cols=27  Identities=15%  Similarity=0.053  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEE   89 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~   89 (250)
                      +|..+-.+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555555666666666665555433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=84.24  E-value=5.1  Score=28.26  Aligned_cols=49  Identities=6%  Similarity=-0.101  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG  233 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  233 (250)
                      ..---++.+|.+.|+++.|...+++.......---.-|...+.|++.-.
T Consensus        48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            4455667777888888888877777765433222244555555655443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.69  E-value=1.6  Score=20.55  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=12.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHH
Q 037164          223 SSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       223 ~~li~~~~~~g~~~~a~~~~~  243 (250)
                      ..+-.++...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            344555666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=83.17  E-value=20  Score=27.94  Aligned_cols=161  Identities=8%  Similarity=-0.050  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHH---HHHHHHHhhcCChhhHHHHHHHHHhcC-CCCCchhHhhhHHHHHh--c------
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYC---YIMMILNYLTGNREKIDALMLEMEEKS-INGDQFTLGIRPSAYAA--A------  109 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y---~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~~~ty~~li~~~~~--~------  109 (250)
                      .++|.+.|+++.... +-+..+-   -.+..+|.+.++++.|...+++..+.. -.|+ .-|...+.+.+.  .      
T Consensus        48 y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~  125 (243)
T PRK10866         48 WKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQ  125 (243)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhh
Confidence            789999999998753 2222332   345677899999999999999987652 2232 234344444331  1      


Q ss_pred             ---------CCh---hHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCch-hhhcchhHHHHHHHHH
Q 037164          110 ---------SDI---HGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSS-NAFELKDQLYRIWKHY  176 (250)
Q Consensus       110 ---------~~~---~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  176 (250)
                               .|.   ..|.+.|+++...  . |++.-    ..+|...+..+..........+ .-|.+.+....+...+
T Consensus       126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S~y----a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~  198 (243)
T PRK10866        126 GFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNSQY----TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV  198 (243)
T ss_pred             hccCCCccccCHHHHHHHHHHHHHHHHH--C-cCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence                     122   2445566665542  2 22211    2222222222221111111000 0222333333333333


Q ss_pred             hcc----CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          177 GQT----RK--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       177 ~~~----~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      +..    +.  ........++.+|.+.|..+.|..+.....
T Consensus       199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            333    22  222455577899999999999998887654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=83.01  E-value=20  Score=27.99  Aligned_cols=55  Identities=16%  Similarity=0.105  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHhcCChhHHHHHHHHH
Q 037164          190 MMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG---LPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       190 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      +-.-|.+.|....|..-+++|... .+-+..   ..-.|..+|-+.|..++|.+.-+-+
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            445677777777777777777744 222222   2445666777777777776655443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.20  E-value=3.3  Score=20.43  Aligned_cols=26  Identities=23%  Similarity=0.014  Sum_probs=14.5

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          222 PSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       222 ~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |..+-..|...|++++|.+.|++.++
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34455556666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.09  E-value=3.6  Score=20.39  Aligned_cols=25  Identities=20%  Similarity=-0.012  Sum_probs=13.5

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          222 PSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       222 ~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      |..+-..|...|++++|...|++..
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444455555555555555555544

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=81.61  E-value=1.5  Score=21.60  Aligned_cols=24  Identities=17%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcc
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQ   36 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~   36 (250)
                      ++.+.|+.++|.+.|+.+....|+
T Consensus         9 ~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    9 CYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHCcC
Confidence            566789999999999999887665

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.21  E-value=3.2  Score=22.70  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=10.9

Q ss_pred             HHHHhcCChhHHHHHHHHHhh
Q 037164          104 SAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus       104 ~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .+|...||.+.|.+++++...
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHHH
Confidence            345555555555555555443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=80.69  E-value=51  Score=31.04  Aligned_cols=205  Identities=10%  Similarity=0.040  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CC-CCCchhHhhhHHHHHhcCCh
Q 037164           42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SI-NGDQFTLGIRPSAYAAASDI  112 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi-~p~~~ty~~li~~~~~~~~~  112 (250)
                      .++|...+++..+.--..+    ....+.+-..+...|++++|...+.+....    |- .+-..++..+-..+...|++
T Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~  547 (903)
T PRK04841        468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL  547 (903)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence            6677777777654211111    133455556667788888888777776532    11 11123444555667778888


Q ss_pred             hHHHHHHHHHhhC---CCCC--c-cHHHHHHH---------HHHHHHHHHHHHhhhhccCCc--hhhhc-------chhH
Q 037164          113 HGMDKIINMTESN---PQMV--L-DFNLLAVL---------LYMAMTMLKKSEGLIATKRNS--SNAFE-------LKDQ  168 (250)
Q Consensus       113 ~~a~~~~~~m~~~---~g~~--~-~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~--~~~~~-------~~~~  168 (250)
                      ++|...+++....   .+..  + ....+..+         .++|...+.+...........  ...+.       ..++
T Consensus       548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~  627 (903)
T PRK04841        548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD  627 (903)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence            8888777765321   1211  1 11212111         566666665554221111000  00111       2333


Q ss_pred             HHHHHHHHhcc---CC--CChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHhcCC
Q 037164          169 LYRIWKHYGQT---RK--VFNKGY-----MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL----PSSLIDAHCKNGL  234 (250)
Q Consensus       169 ~~~~~~~~~~~---~~--~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~  234 (250)
                      ...+...+...   ..  .....+     ...+..+...|+.+.|..++........ .....    +..+..++...|+
T Consensus       628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~  706 (903)
T PRK04841        628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQ  706 (903)
T ss_pred             HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCC
Confidence            33333322221   00  001111     1122444557778888887766442111 11111    3456677888999


Q ss_pred             hhHHHHHHHHHHh
Q 037164          235 LEKAQSLINHAET  247 (250)
Q Consensus       235 ~~~a~~~~~~m~~  247 (250)
                      .++|...+++..+
T Consensus       707 ~~~A~~~l~~al~  719 (903)
T PRK04841        707 FDEAEIILEELNE  719 (903)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 50/292 (17%), Positives = 88/292 (30%), Gaps = 93/292 (31%)

Query: 12  NLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILN 71
           ++I     V      F      L         K E +VQ+   +    R  Y ++M  + 
Sbjct: 53  HIIMSKDAVSGTLRLFW----TLLS-------KQEEMVQKF--VEEVLRINYKFLMSPIK 99

Query: 72  YLTGNREKIDALMLEMEEKSINGDQ-FT-----------------LGIRPSAYAAASDIH 113
                   +  + +E  ++  N +Q F                  L +RP+       I 
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---ID 156

Query: 114 GM-----------------------DKI--INMTESN-PQMVLDFNLLAVLLYMAMTMLK 147
           G+                        KI  +N+   N P+ VL+  +L  LLY       
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWT 214

Query: 148 -KSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAE-- 204
            +S+     K        ++ +L R+ K      K +          LL L +V+ A+  
Sbjct: 215 SRSDHSSNIKLRIH---SIQAELRRLLKS-----KPYENC-------LLVLLNVQNAKAW 259

Query: 205 -------KTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK 249
                  K L   T++       +   L  A   +  L+     +   E K 
Sbjct: 260 NAFNLSCKIL--LTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.67
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.57
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.42
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.4
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.33
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.28
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.28
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.24
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.17
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.14
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.1
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.02
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.02
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.89
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.78
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.73
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.73
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.69
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.53
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.48
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.46
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.43
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.41
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.41
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.36
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.33
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.12
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.1
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.03
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.02
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.02
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.01
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.98
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.97
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.96
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.96
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.93
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.91
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.9
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.81
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.81
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.52
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.44
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.37
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.35
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.32
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.18
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.12
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.09
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.99
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.94
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.8
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.79
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.62
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.6
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.54
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.38
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.38
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.11
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.09
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.87
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.85
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.64
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.54
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.49
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.37
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.19
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.0
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.43
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.25
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	94.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.55
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.01
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.45
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.3
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	91.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.42
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.75
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	87.26
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.68
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	81.19

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.7e-33  Score=237.20  Aligned_cols=171  Identities=9%  Similarity=0.011  Sum_probs=109.6

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhh--hccccccc--------------------hhHHHHHHHHHHHCCCCccHHHHHH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKL--LRQCLFFG--------------------VGKAEMVVQEMKDMGFARRTIYCYI   66 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~--~~~~~~y~--------------------~~~A~~~~~~m~~~~~~p~~~~y~~   66 (250)
                      .+|++|+|.|++++|.++|++|...  .|+..+|+                    +++|.++|++|.+.|+.||..|||+
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            4567777777777777777766655  34444444                    2344444444444444444444444


Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHH
Q 037164           67 MMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTML  146 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~  146 (250)
                      ||.+|++.|++++|.++|++|++.|+.||..|||+||.+|++.|++++|.++|++|... |+.                 
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~-----------------  172 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVV-----------------  172 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCC-----------------
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-----------------
Confidence            44444444444444444444444444444444444444444444444444444444444 443                 


Q ss_pred             HHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHH
Q 037164          147 KKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLI  226 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li  226 (250)
                                                         ||..||++||.+|++.|++++|.++|++|++.|..|+..||++|+
T Consensus       173 -----------------------------------Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~  217 (501)
T 4g26_A          173 -----------------------------------PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE  217 (501)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred             -----------------------------------CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence                                               556778999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 037164          227 DAHCKN  232 (250)
Q Consensus       227 ~~~~~~  232 (250)
                      ..|+..
T Consensus       218 ~~F~s~  223 (501)
T 4g26_A          218 EWFKSE  223 (501)
T ss_dssp             HHHHSH
T ss_pred             HHHhcC
Confidence            998864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.4e-32  Score=231.30  Aligned_cols=179  Identities=10%  Similarity=0.010  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHCCCCccH-HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC---------hhH
Q 037164           45 AEMVVQEMKDMGFARRT-IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD---------IHG  114 (250)
Q Consensus        45 A~~~~~~m~~~~~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~---------~~~  114 (250)
                      ++.+.+++++.+..+.+ ..++.+|.+|++.|++++|.++|++|++.|+.||..|||+||++|++.+.         ++.
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            44555566555544332 34666677777777777777777777777777777777777777666554         455


Q ss_pred             HHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164          115 MDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       115 a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      |.++|++|... |+.||..||+++         +++|.++|++|....                          ..|+..
T Consensus        89 A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------------------~~Pd~~  141 (501)
T 4g26_A           89 GFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------------------IQPRLR  141 (501)
T ss_dssp             HHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------CCCCHH
T ss_pred             HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------------CCCccc
Confidence            66777777666 777777777666         344444444443111                          126778


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      |||++|.+|++.|++++|.++|++|...|+.||..||++||.+|++.|++++|.+++++|.+.|+
T Consensus       142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR  206 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999999999999999999999999999999999999998774

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=179.12  Aligned_cols=126  Identities=7%  Similarity=0.023  Sum_probs=109.8

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEME   88 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~   88 (250)
                      ++|++|||.|++++|.++|.+|...                   .+.|+.||++|||+||.+||+.|++++|.++|++|+
T Consensus       132 aLIdglcK~G~leeA~~Lf~eM~~m-------------------~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~  192 (1134)
T 3spa_A          132 AFFKCCLLTDQLPLAHHLLVVHHGQ-------------------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK  192 (1134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHS-------------------HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHH-------------------hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            8999999999999999999888742                   344689999999999999999999999999999999


Q ss_pred             hcCCCCCchhHhhhHHHHHhcCCh-hHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHHHHHHhhhh
Q 037164           89 EKSINGDQFTLGIRPSAYAAASDI-HGMDKIINMTESNPQMVLDFNLLAVL-----LYMAMTMLKKSEGLIA  154 (250)
Q Consensus        89 ~~gi~p~~~ty~~li~~~~~~~~~-~~a~~~~~~m~~~~g~~~~~~~~~~l-----~~~a~~~~~~~~~~~~  154 (250)
                      +.|+.||.+|||+||+++|+.|+. ++|.++|++|... |+.||..||+.+     -+..++..+++.....
T Consensus       193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~  263 (1134)
T 3spa_A          193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS  263 (1134)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred             HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence            999999999999999999999985 7899999999999 999999999988     3444444444443333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.87  E-value=9.3e-23  Score=179.55  Aligned_cols=130  Identities=11%  Similarity=0.073  Sum_probs=113.8

Q ss_pred             CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh---cCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164           57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEE---KSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN  133 (250)
Q Consensus        57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~  133 (250)
                      +..-..|||+||++||+.|++++|.++|++|.+   .|+.||++|||+||++||+.|++++|.++|++|... |+.||  
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PD--  199 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPD--  199 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCC--
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCc--
Confidence            344557999999999999999999999998864   589999999999999999999999999999999998 88766  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 037164          134 LLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDV-KGAEKTLRNWTS  212 (250)
Q Consensus       134 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  212 (250)
                                                                        ..|||++|+++|+.|+. ++|.++|++|.+
T Consensus       200 --------------------------------------------------vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          200 --------------------------------------------------LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence                                                              45578899999999984 789999999999


Q ss_pred             CCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164          213 KNLPYDFGLPSSLIDAHCKNGLLEKAQ  239 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~~g~~~~a~  239 (250)
                      .|+.||..+|++++.++.+.+-++.+.
T Consensus       230 kG~~PD~vtY~~ll~~~eR~~vL~~Vr  256 (1134)
T 3spa_A          230 EGLKLQALFTAVLLSEEDRATVLKAVH  256 (1134)
T ss_dssp             HTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred             cCCCCChhhcccccChhhHHHHHHHHH
Confidence            999999999999998877765444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.85  E-value=6e-20  Score=158.64  Aligned_cols=231  Identities=8%  Similarity=0.002  Sum_probs=133.7

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+..+|.+.|++++|.++|+++....| +..+|.           .++|..+|+++.+. .+.+..+|+.++.+|.+.|+
T Consensus       310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhcc
Confidence            445556666666666666666554422 222332           56666666666543 24456666666667777777


Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHH
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLK  147 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~  147 (250)
                      +++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++...  .+.+..+|..+         +++|.++|+
T Consensus       389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
T 2xpi_A          389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQ  465 (597)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777776665531 224556666777777777777777777666543  22234444444         666666666


Q ss_pred             HHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc-------C-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037164          148 KSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT-------R-KVF--NKGYMTMMGLLLKLDDVKGAEKTLRNW  210 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m  210 (250)
                      ++.... |... . +|.       ..++.+++.+.++..       . .|+  ..+|..+..+|.+.|++++|.++|+++
T Consensus       466 ~~~~~~-~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          466 SSYALF-QYDP-L-LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHC-CCCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhC-CCCh-H-HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            665332 2221 1 332       445555555555443       1 233  456667777777777777777777766


Q ss_pred             HhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          211 TSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       211 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ...+ +.+..+|..+..+|.+.|++++|.++|+++.+
T Consensus       543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            6443 33566677777777777777777777766654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.84  E-value=4.9e-19  Score=152.90  Aligned_cols=233  Identities=9%  Similarity=-0.020  Sum_probs=195.1

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      .++++|++.|++++|.++|+.+....++..++.           .++|.++|+++.+.+ +.+..+|+.++.+|.+.|++
T Consensus       277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  355 (597)
T 2xpi_A          277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK  355 (597)
T ss_dssp             TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence            458899999999999999999887655666665           899999999998865 45789999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK  148 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~  148 (250)
                      ++|.++++++.+. .+.+..+|+.+..+|.+.|++++|.++|+++...  .+.+..+|..+         .++|.++|++
T Consensus       356 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  432 (597)
T 2xpi_A          356 NKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTT  432 (597)
T ss_dssp             HHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999865 3457889999999999999999999999998753  23345566666         8999999999


Q ss_pred             HHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 037164          149 SEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK----N  214 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~  214 (250)
                      +......+..   +|.       ..++.+++.+.++..   .+.+..+|+.++..|.+.|++++|.++|+++...    +
T Consensus       433 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  509 (597)
T 2xpi_A          433 AARLFQGTHL---PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ  509 (597)
T ss_dssp             HHHTTTTCSH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhCccchH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence            9854422222   443       677777777777665   3456789999999999999999999999999865    6


Q ss_pred             CCCC--CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          215 LPYD--FGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       215 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..|+  ..+|..+..+|.+.|++++|..+++++.+.
T Consensus       510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            6777  679999999999999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.67  E-value=3.2e-14  Score=116.55  Aligned_cols=198  Identities=10%  Similarity=-0.055  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|.++|+++.+.. +.+..+|+.+..+|.+.|++++|...|+++.+.+ +.+...|..+-..+...|++++|...+++
T Consensus       151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          151 LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455555555554431 2234555555555555555555555555555431 11234455555555556666666666555


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCC
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKV  182 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~  182 (250)
                      ....  .+.+..++..+         +++|.+.++++.... |....  +|.       ..++.+++.+.++..   .+.
T Consensus       229 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          229 ALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH--HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            5432  11123333333         677777777766432 22221  222       555566666655543   334


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +..+|+.+...+.+.|++++|...++++... .+.+..++..+...|.+.|++++|...++++.+
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          304 HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5577888888888888888888888887742 344566788888888888888888888888765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=8e-14  Score=114.17  Aligned_cols=228  Identities=11%  Similarity=0.034  Sum_probs=120.3

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ..+.+.|++++|..+++......| +...|.           .++|...|+++.+.. +.+..+|..+..+|.+.|++++
T Consensus        41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  119 (388)
T 1w3b_A           41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG  119 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence            344555666666666655544422 222332           556666666665532 2234455666666666666666


Q ss_pred             HHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHH
Q 037164           80 IDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKS  149 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~  149 (250)
                      |.+.|+++.+.  .|+. ..+..+-..+...|++++|.++|+++...  .+.+..+|..+         +++|...|+++
T Consensus       120 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  195 (388)
T 1w3b_A          120 AVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             HHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666555443  2332 33444445555555555555555555432  11122333322         44444444444


Q ss_pred             Hhhh---------------------------------hccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhh
Q 037164          150 EGLI---------------------------------ATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKG  186 (250)
Q Consensus       150 ~~~~---------------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~  186 (250)
                      ....                                 .|... . ++.       ..++.+++.+.++..   .+.+..+
T Consensus       196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  273 (388)
T 1w3b_A          196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-V-VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence            3211                                 11111 0 111       445555555555443   2233466


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          187 YMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       187 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |..+...+.+.|++++|...|+++... .+.+..+++.+...|.+.|++++|...++++.+
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            777777777777777777777777643 345666777777777777777777777777654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.58  E-value=2.3e-13  Score=113.26  Aligned_cols=234  Identities=7%  Similarity=-0.045  Sum_probs=130.2

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+...+.+.|++++|.++|+.+....|+ ...|.           .++|...|+++.+.+ +.+..++..+..+|.+.|+
T Consensus        31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence            3444556666666666666665554222 22222           455555555554432 2334455555555555555


Q ss_pred             hhhHHHHHHHHHhcC------------------------------------------------CCCCchhHhhhHHHHHh
Q 037164           77 REKIDALMLEMEEKS------------------------------------------------INGDQFTLGIRPSAYAA  108 (250)
Q Consensus        77 ~~~a~~~~~~m~~~g------------------------------------------------i~p~~~ty~~li~~~~~  108 (250)
                      +++|.++|+++.+.+                                                -+.+..++..+..+|.+
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  189 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK  189 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            555555555444321                                                12234455555666666


Q ss_pred             cCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCch-----------------hh
Q 037164          109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSS-----------------NA  162 (250)
Q Consensus       109 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----------------~~  162 (250)
                      .|++++|.++|+++...  .+.+..++..+         .++|...|+++.... |.....                 ..
T Consensus       190 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~  266 (450)
T 2y4t_A          190 EGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEE  266 (450)
T ss_dssp             TTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665432  11223333333         667777777665322 222100                 01


Q ss_pred             hcchhHHHHHHHHHhccCC--CC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCh
Q 037164          163 FELKDQLYRIWKHYGQTRK--VF-----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLL  235 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  235 (250)
                      +...++.+++.+.++....  |+     ...|..+...+.+.|++++|...++++... .+.+..+|..+..+|...|++
T Consensus       267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~  345 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMY  345 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCH
Confidence            1145555566555554422  33     236677778888888888888888887643 234567788888888888888


Q ss_pred             hHHHHHHHHHHh
Q 037164          236 EKAQSLINHAET  247 (250)
Q Consensus       236 ~~a~~~~~~m~~  247 (250)
                      ++|...++++.+
T Consensus       346 ~~A~~~~~~al~  357 (450)
T 2y4t_A          346 DEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            888888887765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.57  E-value=5.5e-13  Score=111.00  Aligned_cols=197  Identities=9%  Similarity=-0.029  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+.+.+.+ +.+..+|..+..+|.+.|++++|.+.|++
T Consensus        42 ~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  119 (450)
T 2y4t_A           42 LADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKK  119 (450)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            89999999999876 35678999999999999999999999999988864 33578899999999999999999999999


Q ss_pred             HhhCCCCCccH----HHHHHH---------------------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHH
Q 037164          122 TESNPQMVLDF----NLLAVL---------------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQL  169 (250)
Q Consensus       122 m~~~~g~~~~~----~~~~~l---------------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  169 (250)
                      +...   .|+.    ..+..+                     +++|...|+++.... |....  .+.       ..++.
T Consensus       120 ~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~g~~  193 (450)
T 2y4t_A          120 VLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE--LRELRAECFIKEGEP  193 (450)
T ss_dssp             HHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHTTCG
T ss_pred             HHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH--HHHHHHHHHHHCCCH
Confidence            9754   2332    222111                     788888888876432 22221  222       33333


Q ss_pred             HHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHH------------HHHHHhcCC
Q 037164          170 YRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSL------------IDAHCKNGL  234 (250)
Q Consensus       170 ~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~  234 (250)
                      +++.+.++..   .+.+..+|..+...|.+.|++++|...|+++... .+.+...+..+            ...|.+.|+
T Consensus       194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (450)
T 2y4t_A          194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR  272 (450)
T ss_dssp             GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3333333332   2234466666666666666666666666666532 11122233333            555666666


Q ss_pred             hhHHHHHHHHHHh
Q 037164          235 LEKAQSLINHAET  247 (250)
Q Consensus       235 ~~~a~~~~~~m~~  247 (250)
                      +++|..+|+++.+
T Consensus       273 ~~~A~~~~~~~l~  285 (450)
T 2y4t_A          273 YTDATSKYESVMK  285 (450)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.53  E-value=1.9e-12  Score=103.02  Aligned_cols=231  Identities=8%  Similarity=-0.048  Sum_probs=175.1

Q ss_pred             chhhHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-
Q 037164            9 SRLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-   75 (250)
Q Consensus         9 ~~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-   75 (250)
                      .....+...|++++|.++|+.+....|.. ..+.           .++|..+++++.+.. +.+..+|..+...|...| 
T Consensus        27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  105 (330)
T 3hym_B           27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH  105 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence            45567778899999999999988774433 2222           899999999998863 456789999999999999 


Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHH
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTML  146 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~  146 (250)
                      ++++|.+.|+...+.. +.+...|..+...+...|++++|.+.+++.... . +.+...+..+         .++|.+.+
T Consensus       106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (330)
T 3hym_B          106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-M-KGCHLPMLYIGLEYGLTNNSKLAERFF  182 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999887653 335778999999999999999999999998654 1 1112222222         88999999


Q ss_pred             HHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC------------CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164          147 KKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR------------KVFNKGYMTMMGLLLKLDDVKGAEKTL  207 (250)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~  207 (250)
                      ++..... |... . .+.       ..++.+++.+.++...            +.....|..+...+.+.|++++|...+
T Consensus       183 ~~al~~~-~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          183 SQALSIA-PEDP-F-VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HHHHTTC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhC-CCCh-H-HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9887544 2222 1 222       5555555555553321            223468889999999999999999999


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          208 RNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       208 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++..... +.+..++..+...|.+.|++++|...+++..+
T Consensus       260 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          260 RQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            9988543 44788899999999999999999999988764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.44  E-value=7.1e-12  Score=101.44  Aligned_cols=228  Identities=7%  Similarity=-0.062  Sum_probs=129.1

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ..+.+.|++++|..+|+.+....|+ ...|.           .++|...|++..+.+ +.+..++..+..+|...|++++
T Consensus        72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  150 (368)
T 1fch_A           72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ  150 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            4566677777777777776655332 22222           667777777776653 3456677777777777777777


Q ss_pred             HHHHHHHHHhcCCCCCchhHhh---------------hHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------
Q 037164           80 IDALMLEMEEKSINGDQFTLGI---------------RPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------  138 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~ty~~---------------li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------  138 (250)
                      |.+.++.+.... +.+...+..               .+..+...|++++|.+.++++.....-.++..++..+      
T Consensus       151 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~  229 (368)
T 1fch_A          151 ACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  229 (368)
T ss_dssp             HHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence            777777666542 112222221               2333336777777777777665431111134444333      


Q ss_pred             ---HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164          139 ---LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEK  205 (250)
Q Consensus       139 ---~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~  205 (250)
                         +++|...+++..... |... . .+.       ..++.+++.+.++..   .+.+...+..+...|.+.|++++|..
T Consensus       230 ~g~~~~A~~~~~~al~~~-~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVR-PNDY-L-LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-cCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence               667777776665432 2221 1 222       445555555555443   22334666777777777777777777


Q ss_pred             HHHHHHhCCCCC----------CCcchHHHHHHHHhcCChhHHHHHHHH
Q 037164          206 TLRNWTSKNLPY----------DFGLPSSLIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       206 ~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~  244 (250)
                      .|++........          ...+|..+..+|...|++++|..++.+
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            777765321111          145677777777777777777766653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.44  E-value=4.6e-11  Score=95.88  Aligned_cols=232  Identities=7%  Similarity=-0.037  Sum_probs=151.2

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCC---ccHHHHHHH--------
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFA---RRTIYCYIM--------   67 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~---p~~~~y~~l--------   67 (250)
                      -..+.+.|++++|...|+......|+ ...|.           .++|...|++..+.. +   .+...+..+        
T Consensus        44 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  122 (359)
T 3ieg_A           44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQR  122 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHH
Confidence            34556667777777777766655332 22222           677777777777652 2   234444444        


Q ss_pred             ----HHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----
Q 037164           68 ----MILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-----  138 (250)
Q Consensus        68 ----i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----  138 (250)
                          ...+...|++++|.+++++..+. .+.+...+..+..++...|++++|.+.+++....  .+.+...+..+     
T Consensus       123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          123 LRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYY  199 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence                46677777888888887776654 2335677777788888888888888888887654  22334444444     


Q ss_pred             ----HHHHHHHHHHHHhhhhccCCch-----------------hhhcchhHHHHHHHHHhccCC--CCh-----hhHHHH
Q 037164          139 ----LYMAMTMLKKSEGLIATKRNSS-----------------NAFELKDQLYRIWKHYGQTRK--VFN-----KGYMTM  190 (250)
Q Consensus       139 ----~~~a~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~l  190 (250)
                          .++|...+++..... |.....                 ..+...++.+++.+.++....  |+.     ..+..+
T Consensus       200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  278 (359)
T 3ieg_A          200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI  278 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence                777777777776432 222100                 012255566666666655422  332     224456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          191 MGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       191 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...+.+.|++++|...+++.... .+.+..++..+...|...|++++|...|+++.+.
T Consensus       279 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          279 CHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            68889999999999999998754 3446788899999999999999999999988753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.42  E-value=5.6e-12  Score=100.16  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=163.6

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      .-..+.+.|++++|..+|+.+....|+ ...+.           .++|...|++..+.. +.+..++..+..+|...|++
T Consensus        27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~  105 (327)
T 3cv0_A           27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  105 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence            344677899999999999998776443 23333           899999999998863 45778899999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCc-hhHhhh--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164           78 EKIDALMLEMEEKSINGDQ-FTLGIR--------------PS-AYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---  138 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~-~ty~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---  138 (250)
                      ++|.+.++...+.  .|+. ..+..+              .. .+...|++++|.++++++...  .+.+...+..+   
T Consensus       106 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~  181 (327)
T 3cv0_A          106 NAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVL  181 (327)
T ss_dssp             HHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence            9999999988765  2332 333333              22 377888999999999998654  22244444444   


Q ss_pred             ------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHH
Q 037164          139 ------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKG  202 (250)
Q Consensus       139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~  202 (250)
                            .++|.+.+++..... |... . .+.       ..++.+++.+.++..   .+.+...|..+...+.+.|++++
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~-~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELR-PDDA-Q-LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCcH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence                  888888888877443 2222 1 222       566666666666554   33445788888999999999999


Q ss_pred             HHHHHHHHHhCCCCC-----------CCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          203 AEKTLRNWTSKNLPY-----------DFGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       203 A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      |...+++........           +..+|..+..+|.+.|++++|..++++.
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999887543221           4678888999999999999999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.42  E-value=6.6e-12  Score=101.81  Aligned_cols=227  Identities=9%  Similarity=-0.037  Sum_probs=129.3

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      -..+.+.|++++|.++|+.+....|+ ...|.           .++|...|++..+.. +.+..+|..+..+|.+.|+++
T Consensus        72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  150 (365)
T 4eqf_A           72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQ  150 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHH
Confidence            44667778888888888877666332 23333           677777777776653 345677777777777788888


Q ss_pred             hHHHHHHHHHhcCCCCC-----------chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------
Q 037164           79 KIDALMLEMEEKSINGD-----------QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------  138 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~-----------~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------  138 (250)
                      +|.++++++.+..  |+           ..++..+...+.+.|++++|.++++++.....-.++..++..+         
T Consensus       151 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~  228 (365)
T 4eqf_A          151 DACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE  228 (365)
T ss_dssp             HHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence            8877777766531  21           1223344667777777777777777775431111134444444         


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLR  208 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~  208 (250)
                      +++|.+.+++..... |... . ++.       ..++.+++.+.++..   .+.+...|..+...|.+.|++++|...|+
T Consensus       229 ~~~A~~~~~~al~~~-p~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  305 (365)
T 4eqf_A          229 FNRAIDAFNAALTVR-PEDY-S-LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL  305 (365)
T ss_dssp             HHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            667777776665432 2221 1 222       455555555555443   22334666666677777777777777777


Q ss_pred             HHHhCCC---C--------CCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          209 NWTSKNL---P--------YDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       209 ~m~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      +......   .        .+..+|..|..++...|+.+.+..+..
T Consensus       306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            6553211   0        135566777777777777776666544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.3e-11  Score=102.63  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=59.9

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      ..+.+.|++++|.+.|+++....|+...|.           .++|...|+++.+.+ +.+..+|..+..+|.+.|++++|
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   92 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA   92 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence            356778888888888888877766665555           788888888887763 45567888888888888888888


Q ss_pred             HHHHHHHHhcC
Q 037164           81 DALMLEMEEKS   91 (250)
Q Consensus        81 ~~~~~~m~~~g   91 (250)
                      ...|+.+...+
T Consensus        93 ~~~~~~~~~~~  103 (514)
T 2gw1_A           93 MFDLSVLSLNG  103 (514)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhcC
Confidence            88888776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.2e-11  Score=104.30  Aligned_cols=224  Identities=9%  Similarity=0.033  Sum_probs=171.9

Q ss_pred             hccChhHHHHHHHHhhh-----h--hc--------cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHH
Q 037164           16 EVHGVEQAEIYFDNISK-----L--LR--------QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMI   69 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~-----~--~~--------~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~   69 (250)
                      +.|++++|..+|+.+..     .  .|        +...+.           .++|..+|++..+.+  |+..+|..+..
T Consensus       201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~  278 (514)
T 2gw1_A          201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL  278 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence            48999999999998876     2  11        122222           899999999998864  44889999999


Q ss_pred             HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HH
Q 037164           70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LY  140 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~  140 (250)
                      +|...|++++|.+.++...+.. +.+..+|..+...|...|++++|...+++.... . +.+...+..+         .+
T Consensus       279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~  355 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-D-PENIFPYIQLACLAYRENKFD  355 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT-C-SSCSHHHHHHHHHTTTTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-hhhHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999987752 346788999999999999999999999998764 1 2223333333         89


Q ss_pred             HHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-------hhhHHHHHHHHHh---cCCHH
Q 037164          141 MAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-------NKGYMTMMGLLLK---LDDVK  201 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-------~~~~~~li~~~~~---~g~~~  201 (250)
                      +|...++++.... |....  .+.       ..++.+++...++....  |+       ...|..+...+.+   .|+++
T Consensus       356 ~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  432 (514)
T 2gw1_A          356 DCETLFSEAKRKF-PEAPE--VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI  432 (514)
T ss_dssp             HHHHHHHHHHHHS-TTCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred             HHHHHHHHHHHHc-ccCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            9999999987543 33321  332       66666666666655422  21       2388899999999   99999


Q ss_pred             HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +|...+++..... +.+..++..+...|.+.|++++|...|++..+.
T Consensus       433 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          433 EATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9999999988543 446778899999999999999999999988764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=4.4e-11  Score=96.74  Aligned_cols=230  Identities=9%  Similarity=-0.090  Sum_probs=163.6

Q ss_pred             HhhhccChhHHHH-HHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164           13 LIFEVHGVEQAEI-YFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG   75 (250)
Q Consensus        13 ~~~k~~~~~~a~~-~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g   75 (250)
                      .+.-.|++++|.. .|++.....|+.     ..+.           .++|...|+++.+.. +.+..+|..+..+|.+.|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3445678888887 777554432221     1122           899999999999874 567889999999999999


Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccH--------------------HHH
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDF--------------------NLL  135 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--------------------~~~  135 (250)
                      ++++|.+.++...+.+ +.+..+|..+..+|...|++++|.+.++++.....-.+..                    ..+
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            9999999999988763 3477889999999999999999999999986541111111                    111


Q ss_pred             HHH--HHHHHHHHHHHHhhhhcc-CCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHH
Q 037164          136 AVL--LYMAMTMLKKSEGLIATK-RNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKG  202 (250)
Q Consensus       136 ~~l--~~~a~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~  202 (250)
                      ...  .++|...+.++....... .. . ++.       ..++.+++...++..   .+.+...|..+...+.+.|++++
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDP-D-VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCH-H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccH-H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            112  888999998887543221 11 1 332       667777777777654   33455889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       203 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |...|++.... .+.+..++..+...|.+.|++++|...++++.+
T Consensus       270 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          270 AVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999998854 344677899999999999999999999998875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=3.2e-11  Score=92.45  Aligned_cols=198  Identities=15%  Similarity=0.076  Sum_probs=150.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCC----chhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGD----QFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~----~~ty~~li~~~~~~~~~~~a  115 (250)
                      .++|..+|++..+..  ++..+|..+..+|...|++++|.+.++...+..  ..|+    ..+|..+..+|.+.|++++|
T Consensus        21 ~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   98 (258)
T 3uq3_A           21 FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT   98 (258)
T ss_dssp             HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHH
Confidence            566666666666655  778899999999999999999999999876642  1122    57888899999999999999


Q ss_pred             HHHHHHHhhCCCCCccHHHHHHH--HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCC
Q 037164          116 DKIINMTESNPQMVLDFNLLAVL--LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVF  183 (250)
Q Consensus       116 ~~~~~~m~~~~g~~~~~~~~~~l--~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~  183 (250)
                      .+.+++....   .|+..++..+  .++|...+++..........   .+.       ..++.+++.+.++..   .+.+
T Consensus        99 ~~~~~~a~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  172 (258)
T 3uq3_A           99 IEYYQKSLTE---HRTADILTKLRNAEKELKKAEAEAYVNPEKAE---EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED  172 (258)
T ss_dssp             HHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhc---CchhHHHHHHhHHHHHHHHHHHHHHcCcchHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence            9999988753   3555666666  88888888887643211111   222       566666666666554   3345


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...|..+...+.+.|++++|...+++..... +.+..+|..+...|.+.|++++|...+++..+.
T Consensus       173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            6888999999999999999999999988643 445788999999999999999999999988753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=3.6e-11  Score=97.47  Aligned_cols=197  Identities=10%  Similarity=-0.052  Sum_probs=156.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+|+++.+.. +.+..+|..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.+++
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  158 (365)
T 4eqf_A           81 LPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKN  158 (365)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            899999999998863 5678999999999999999999999999988753 33578899999999999999999999999


Q ss_pred             HhhCCCCCccH-----------HHHHH---H------HHHHHHHHHHHHhhhhcc--CCchhhhc-------chhHHHHH
Q 037164          122 TESNPQMVLDF-----------NLLAV---L------LYMAMTMLKKSEGLIATK--RNSSNAFE-------LKDQLYRI  172 (250)
Q Consensus       122 m~~~~g~~~~~-----------~~~~~---l------~~~a~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~  172 (250)
                      +...   .|+.           .++..   +      +++|...++++.... |.  .. . .+.       ..++.+++
T Consensus       159 al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~-~-~~~~l~~~~~~~g~~~~A  232 (365)
T 4eqf_A          159 WIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDP-D-LQTGLGVLFHLSGEFNRA  232 (365)
T ss_dssp             HHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCH-H-HHHHHHHHHHHHTCHHHH
T ss_pred             HHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCH-H-HHHHHHHHHHHCCCHHHH
Confidence            8653   1221           01111   1      899999999988543 33  22 1 232       66777777


Q ss_pred             HHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          173 WKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       173 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+.++..   .+.+..+|+.+...|.+.|++++|...|++.... .+.+..++..+...|.+.|++++|...|+++.+
T Consensus       233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777664   3345688999999999999999999999998854 344578899999999999999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=1.4e-10  Score=88.96  Aligned_cols=182  Identities=7%  Similarity=-0.080  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.. +.+..++..+..+|...|++++|.+++++..+.. +.+...|..+...|...|++++|.+++++
T Consensus        53 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  130 (252)
T 2ho1_A           53 TEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLE  130 (252)
T ss_dssp             TGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            677777777776653 4567889999999999999999999999887763 33677888899999999999999999999


Q ss_pred             HhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhc
Q 037164          122 TESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKL  197 (250)
Q Consensus       122 m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~  197 (250)
                      +... +..|+ ...+..+   +.                  .|...++.+++.+.++..   .+.+...+..+...+...
T Consensus       131 ~~~~-~~~~~~~~~~~~l---a~------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          131 ASQD-TLYPERSRVFENL---GL------------------VSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HTTC-TTCTTHHHHHHHH---HH------------------HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHhC-ccCcccHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            8763 44453 3333222   00                  111222222333332222   223456788889999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          198 DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       198 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      |+.++|...+++.... .+.+...+..+...|...|++++|.++++++.+.
T Consensus       189 g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          189 REYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             TCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999998743 4456777888999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=4e-10  Score=90.37  Aligned_cols=228  Identities=10%  Similarity=-0.031  Sum_probs=166.6

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ..+.+.|++++|...|+.+....|+ +..+.           .++|...|++..+.. +.+...|..+..+|...|++++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~   89 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE   89 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence            4677899999999999998877444 33333           899999999998863 4467899999999999999999


Q ss_pred             HHHHHHHHHhcCCCC----CchhHhhh------------HHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-----
Q 037164           80 IDALMLEMEEKSING----DQFTLGIR------------PSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-----  138 (250)
Q Consensus        80 a~~~~~~m~~~gi~p----~~~ty~~l------------i~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----  138 (250)
                      |...++...+.  .|    +...+..+            ...+...|++++|.++++++...  .+.+...+..+     
T Consensus        90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFI  165 (359)
T ss_dssp             HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence            99999988764  45    44445444            58899999999999999998654  22334444444     


Q ss_pred             ----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCC--CC-hhhHH------------HHHH
Q 037164          139 ----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--VF-NKGYM------------TMMG  192 (250)
Q Consensus       139 ----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~-~~~~~------------~li~  192 (250)
                          .++|...+++..... |....  .+.       ..++.+++.+.++....  |+ ...+.            .+..
T Consensus       166 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKLK-SDNTE--AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-SCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence                889999999887543 33321  332       66666677666655422  32 23333            2256


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          193 LLLKLDDVKGAEKTLRNWTSKNLPYDF----GLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+.+.|++++|...+++....... +.    ..+..+...|...|++++|...+++..+.
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            789999999999999998864322 22    23555778999999999999999998763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=5.9e-10  Score=88.50  Aligned_cols=202  Identities=8%  Similarity=-0.102  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-ChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-DIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-~~~~a~~~~~  120 (250)
                      .++|.++|+++.+.. +.+..++..+..++.+.|++++|..+++++.+. -+.+...|..+...+...| ++++|.+.++
T Consensus        38 ~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  115 (330)
T 3hym_B           38 FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSNPVSWFAVGCYYLMVGHKNEHARRYLS  115 (330)
T ss_dssp             HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            899999999998763 456677888889999999999999999998875 2336788999999999999 9999999999


Q ss_pred             HHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccC---CCC
Q 037164          121 MTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTR---KVF  183 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~  183 (250)
                      +.... . +.+...+..+         .++|.+.+++.......... .     ..|...++.+++.+.++...   +.+
T Consensus       116 ~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  192 (330)
T 3hym_B          116 KATTL-E-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL-PMLYIGLEYGLTNNSKLAERFFSQALSIAPED  192 (330)
T ss_dssp             HHHTT-C-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHh-C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence            98754 1 2223333333         88999999988754422222 1     01116666777777766543   345


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN--------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...+..+...+.+.|++++|...+++.....        .+.+..++..+...|...|++++|...+++..+.
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            5888999999999999999999999987532        1445678999999999999999999999998764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.33  E-value=2.2e-10  Score=90.48  Aligned_cols=222  Identities=11%  Similarity=-0.018  Sum_probs=151.0

Q ss_pred             hhhccChhHHHHHHHHhhhhhcccc---------ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQCL---------FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~~---------~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      ..-.|+++.|...++.+....|...         +|-    .+.|...++.   . -+|+..++..+...+...|+.++|
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence            3446888888888776544322221         111    5555554433   2 456777888888888888888888


Q ss_pred             HHHHHHHHhcCCCCCchhH-hhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHH
Q 037164           81 DALMLEMEEKSINGDQFTL-GIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSE  150 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty-~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~  150 (250)
                      .+.++++...++.|+...+ ..+-..+...|++++|.+++++       +.+...+..+         .++|.+.|+++.
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8888888777766655444 4444888888888888888876       1233333333         788888888877


Q ss_pred             hhhhccCCch---hhhc----chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          151 GLIATKRNSS---NAFE----LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       151 ~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                      ... |+....   ..|.    ..+..+++...+++.   .+.+...|+.+-.++.+.|++++|+..|++.... .+-+..
T Consensus       158 ~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~  235 (291)
T 3mkr_A          158 DQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPE  235 (291)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred             hhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH
Confidence            442 332100   0111    336677777776554   3456688999999999999999999999998754 344677


Q ss_pred             chHHHHHHHHhcCChhH-HHHHHHHHHhc
Q 037164          221 LPSSLIDAHCKNGLLEK-AQSLINHAETK  248 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~-a~~~~~~m~~~  248 (250)
                      ++..++..+...|+.++ +.++++++.+.
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            89999999999999976 67898887753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.31  E-value=7.1e-13  Score=108.88  Aligned_cols=203  Identities=10%  Similarity=0.035  Sum_probs=80.4

Q ss_pred             hhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHH
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDA   82 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~   82 (250)
                      +-++|++++|.+++++++..    .+|.           +++|++.|.+      .+|..+|..++.++.+.|++++|.+
T Consensus        13 l~~~~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            44678899999999998543    2444           8888888865      2677899999999999999999999


Q ss_pred             HHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhh
Q 037164           83 LMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLI  153 (250)
Q Consensus        83 ~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~  153 (250)
                      +++...+.  .+++.+.+.++.+|.+.|+++++.++++.        |+..+|..+         +++|...|..+....
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~  152 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG  152 (449)
T ss_dssp             ----------------------------CHHHHTTTTTC--------C----------------CTTTHHHHHHHTTCHH
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHH
Confidence            77765553  56688899999999999999998887741        455566666         788888888763111


Q ss_pred             hccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcC
Q 037164          154 ATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNG  233 (250)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  233 (250)
                      .. .  . ++.+.++.+.+.+.++..  .++.+|..++.+|...|+++.|......+.   .  ++.-...++..|.+.|
T Consensus       153 ~L-A--~-~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv~~Yek~G  221 (449)
T 1b89_A          153 RL-A--S-TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRG  221 (449)
T ss_dssp             HH-H--H-HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHHHHHHHTT
T ss_pred             HH-H--H-HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHHHHHHHCC
Confidence            00 0  1 344888888888888877  378999999999999999999965554322   2  3333557889999999


Q ss_pred             ChhHHHHHHHHHHh
Q 037164          234 LLEKAQSLINHAET  247 (250)
Q Consensus       234 ~~~~a~~~~~~m~~  247 (250)
                      ++++|..+++..+.
T Consensus       222 ~~eEai~lLe~aL~  235 (449)
T 1b89_A          222 YFEELITMLEAALG  235 (449)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999987653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=1.8e-09  Score=80.75  Aligned_cols=191  Identities=5%  Similarity=-0.099  Sum_probs=119.5

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK   90 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   90 (250)
                      -..+.+.|++++|.++|+.....                       .+.+..++..+..+|...|++++|.+++++..+.
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   71 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKS-----------------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI   71 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh-----------------------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            33455566666666666655543                       2334567777777777888888888888776664


Q ss_pred             CCCCCchhHhhhHHHHHhc-CChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhH
Q 037164           91 SINGDQFTLGIRPSAYAAA-SDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQ  168 (250)
Q Consensus        91 gi~p~~~ty~~li~~~~~~-~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
                      . +.+..+|..+...+... |++++|.+.++++... +..|+ ...+..+   +.                  .|...++
T Consensus        72 ~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l---~~------------------~~~~~~~  128 (225)
T 2vq2_A           72 K-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNK---GI------------------CSAKQGQ  128 (225)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHH---HH------------------HHHHTTC
T ss_pred             C-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHH---HH------------------HHHHcCC
Confidence            2 23556777777777777 8888888888777653 33333 2222222   00                  1111122


Q ss_pred             HHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          169 LYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       169 ~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      .+++.+.++..   .+.+...+..+...+.+.|++++|..++++........+...+..+...+...|+.+.|..+++.+
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            22222222211   122346677888888999999999999998875432246667778888888899999999988887


Q ss_pred             Hh
Q 037164          246 ET  247 (250)
Q Consensus       246 ~~  247 (250)
                      .+
T Consensus       209 ~~  210 (225)
T 2vq2_A          209 QA  210 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.29  E-value=3.7e-10  Score=95.91  Aligned_cols=229  Identities=12%  Similarity=0.071  Sum_probs=143.7

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhc-cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLR-QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      =..+.+.|++++|.+.|+++....| ++..|.           .++|.+.|++..+.+ +.+..++..+..+|.+.|+++
T Consensus        32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~  110 (537)
T 3fp2_A           32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT  110 (537)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence            3467788999999999998877744 333443           899999999988764 456788888889999999999


Q ss_pred             hHHHHHHHHHhc--------------------------------------------------------------------
Q 037164           79 KIDALMLEMEEK--------------------------------------------------------------------   90 (250)
Q Consensus        79 ~a~~~~~~m~~~--------------------------------------------------------------------   90 (250)
                      +|.+.|+.+...                                                                    
T Consensus       111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (537)
T 3fp2_A          111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD  190 (537)
T ss_dssp             HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence            988877533110                                                                    


Q ss_pred             ---------------------------------------CCCCC--------chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           91 ---------------------------------------SINGD--------QFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        91 ---------------------------------------gi~p~--------~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                                                             ...|+        ..+|..+-..+...|++++|.+.+++..
T Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~  270 (537)
T 3fp2_A          191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI  270 (537)
T ss_dssp             SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence                                                   11122        1124444455666666666766666664


Q ss_pred             hCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCCh
Q 037164          124 SNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFN  184 (250)
Q Consensus       124 ~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~  184 (250)
                      ..   .|+...+..+         .++|...+.+..... |....  ++.       ..++.+++.+.++..   .+.+.
T Consensus       271 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  344 (537)
T 3fp2_A          271 NL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP--TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV  344 (537)
T ss_dssp             HH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred             hc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence            32   2333333333         566666666665332 12211  222       455555555555443   22334


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..|..+...+...|++++|..++++.... .+.+..++..+...|...|++++|...++++.+
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            66777777777788888888888777643 344566777777778888888888887777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.28  E-value=5.3e-10  Score=88.62  Aligned_cols=200  Identities=8%  Similarity=-0.066  Sum_probs=153.5

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+|+++.+.. +.+..++..+..+|.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.+++
T Consensus        37 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  114 (327)
T 3cv0_A           37 LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRA  114 (327)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            799999999998763 4578899999999999999999999999988762 34678899999999999999999999999


Q ss_pred             HhhC-CCCCccHHHH--------------HH--H-----HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHH
Q 037164          122 TESN-PQMVLDFNLL--------------AV--L-----LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRI  172 (250)
Q Consensus       122 m~~~-~g~~~~~~~~--------------~~--l-----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  172 (250)
                      .... +.........              ..  .     .++|...++++.... |....  .+.       ..++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~la~~~~~~~~~~~A  191 (327)
T 3cv0_A          115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ--LHASLGVLYNLSNNYDSA  191 (327)
T ss_dssp             HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH--HHHHHHHHHHHhccHHHH
Confidence            8654 1221111111              22  1     788888888887443 22221  222       66667777


Q ss_pred             HHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          173 WKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       173 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+.++..   .+.+...|..+...+.+.|++++|...|++..... +.+..++..+...|.+.|++++|...++++.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY  268 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            7776554   33455888999999999999999999999987543 44677899999999999999999999998865

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.28  E-value=5.7e-10  Score=86.37  Aligned_cols=221  Identities=10%  Similarity=-0.085  Sum_probs=155.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhc-----cccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLR-----QCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~-----~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      .+...|++++|.+.|+.+....+     +...|.           .++|...|++..+.+ +.+..+|..+..+|.+.|+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence            34557899999999998876521     222222           899999999998863 4568899999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHH
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSE  150 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~  150 (250)
                      +++|.+.++...+.. +.+..+|..+..+|.+.|++++|.+.++++.....-.+....+..+      .++|...+.+..
T Consensus        93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999988752 3367889999999999999999999999986531111222222222      788888887776


Q ss_pred             hhhhccCCchhhhc------chhHHHHHHHHHhccCC--C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164          151 GLIATKRNSSNAFE------LKDQLYRIWKHYGQTRK--V-----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY  217 (250)
Q Consensus       151 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  217 (250)
                      ....+...   .+.      ..++..++++.++....  +     +...|..+...|.+.|++++|...|++....  .|
T Consensus       172 ~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p  246 (275)
T 1xnf_A          172 EKSDKEQW---GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV  246 (275)
T ss_dssp             HHSCCCST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred             hcCCcchH---HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence            54433322   222      33333455555554433  2     1477888889999999999999999998853  23


Q ss_pred             CCcchHHHHHHHHhcCChhHHHHHH
Q 037164          218 DFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       218 ~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                        ..+.....++...|++++|...+
T Consensus       247 --~~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          247 --HNFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --TTCHHHHHHHHHHHHHHHC----
T ss_pred             --hhHHHHHHHHHHHHHHHhhHHHH
Confidence              23455566788888888887765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.28  E-value=5.8e-10  Score=94.68  Aligned_cols=137  Identities=7%  Similarity=0.008  Sum_probs=105.2

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      ..+...|++++|.+.|+......|+...|.           .++|...|++..+.. +.+..+|..+..+|...|++++|
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence            456677899999999999887766644443           899999999998763 45678899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHh
Q 037164           81 DALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEG  151 (250)
Q Consensus        81 ~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~  151 (250)
                      .+.++...+.+ +.+..+|..+..+|...|++++|.+++++....  .+.+...+..+         .++|...+++...
T Consensus       330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999887753 235678888999999999999999999988654  12223333333         7778888877764


Q ss_pred             h
Q 037164          152 L  152 (250)
Q Consensus       152 ~  152 (250)
                      .
T Consensus       407 ~  407 (537)
T 3fp2_A          407 L  407 (537)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.24  E-value=2.3e-10  Score=86.96  Aligned_cols=181  Identities=10%  Similarity=-0.070  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+|++..+. .+.+..++..+..+|.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.+++
T Consensus        39 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (243)
T 2q7f_A           39 YEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEK  116 (243)
T ss_dssp             ---CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45555555555543 24456778888888888888888888888876652 23567777788888888888888888888


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcC
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLD  198 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g  198 (250)
                      +...  .+.+...+..+   +.                  .|...++.+++.+.++..   .+.+...+..+...+.+.|
T Consensus       117 ~~~~--~~~~~~~~~~~---a~------------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  173 (243)
T 2q7f_A          117 ALRA--GMENGDLFYML---GT------------------VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG  173 (243)
T ss_dssp             HHHH--TCCSHHHHHHH---HH------------------HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHh--CCCCHHHHHHH---HH------------------HHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence            7653  12222332222   00                  111112222222222221   2234466778888899999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ++++|...|++.... .+.+..++..+...|...|++++|...++++.+.
T Consensus       174 ~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          174 MLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             CCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            999999999988754 3345678888899999999999999999887653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.21  E-value=1.8e-09  Score=83.50  Aligned_cols=206  Identities=10%  Similarity=-0.052  Sum_probs=142.6

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc-ccc-----------hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCCh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL-FFG-----------VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGNR   77 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~-----------~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~~   77 (250)
                      ..+.+.|++++|.++|+......|+.. .+.           .++|...|++..+..-.|+  ..+|..+..+|...|++
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~   90 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD   90 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence            467788999999999999877744432 333           8999999999987431122  23488899999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHH
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKK  148 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~  148 (250)
                      ++|.+.++...+.. +.+..+|..+...|...|++++|.+.+++....  .+.+...+..+         +++|.+.|++
T Consensus        91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  167 (272)
T 3u4t_A           91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK  167 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887752 235678888999999999999999999988654  22223333222         3333333333


Q ss_pred             HHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhC-CCCCCC-----
Q 037164          149 SEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDD---VKGAEKTLRNWTSK-NLPYDF-----  219 (250)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~~~~~~-----  219 (250)
                      ....                           .+.+...+..+...+...|+   .++|...+++.... ...|+.     
T Consensus       168 a~~~---------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  220 (272)
T 3u4t_A          168 VLEL---------------------------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL  220 (272)
T ss_dssp             HHHH---------------------------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred             HHHh---------------------------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence            3221                           22234556666677777777   77788888876643 222332     


Q ss_pred             -cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          220 -GLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       220 -~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                       .+|..+-..|.+.|++++|...+++..+
T Consensus       221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~  249 (272)
T 3u4t_A          221 IEANEYIAYYYTINRDKVKADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             4677788888889999999999888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=8.1e-10  Score=84.51  Aligned_cols=182  Identities=14%  Similarity=-0.069  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCcc----HHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLD----FNL  134 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~----~~~  134 (250)
                      ....|..+-..+...|++++|.++|++..+..  ++..+|..+..+|...|++++|.+.+++.... +...++    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            35678889999999999999999999998887  78999999999999999999999999987542 122222    344


Q ss_pred             HHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC---CChhhHHHHHHHHHhcCCHHH
Q 037164          135 LAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK---VFNKGYMTMMGLLLKLDDVKG  202 (250)
Q Consensus       135 ~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  202 (250)
                      +..+         .++|...+++..... +...   .+...++.+++.+.++....   .+...|..+...+...|++++
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD---ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC-chhH---HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            4444         889999998887533 2222   66677777777777766432   344778888899999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          203 AEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       203 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      |...|++..... +.+..+|..+...|.+.|++++|...+++..+.
T Consensus       158 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          158 AVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999988543 446788999999999999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.17  E-value=8.1e-10  Score=85.50  Aligned_cols=203  Identities=9%  Similarity=-0.150  Sum_probs=149.2

Q ss_pred             hhHHHHHHHHHHHCCC---CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHH
Q 037164           42 VGKAEMVVQEMKDMGF---ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKI  118 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~  118 (250)
                      .++|...|+++.+...   +.+..+|..+..+|...|++++|.+.|++..+.+ +.+..+|..+...|...|++++|.+.
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~   99 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   99 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            8999999999988632   2257889999999999999999999999988753 33678999999999999999999999


Q ss_pred             HHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc----chhHHHHHHHHHhccCC--CC
Q 037164          119 INMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE----LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       119 ~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~  183 (250)
                      +++....  .+.+...+..+         .++|...++++.... |.......+.    ..++.+++...++....  |+
T Consensus       100 ~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A          100 FDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            9998663  11223333333         899999999987543 2222000011    45666666666644322  33


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP---YDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ......+...+...++.++|...+++.......   .+..++..+...|.+.|++++|...|++..+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            333345778888888999999999987643221   12578899999999999999999999998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.14  E-value=1.2e-08  Score=79.14  Aligned_cols=206  Identities=12%  Similarity=0.003  Sum_probs=145.0

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc---------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh---
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG---------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL---   73 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~---------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~---   73 (250)
                      ..+.+.|++++|.++|+...... ++..+.               .++|...|++..+.+   +...+..+-..|..   
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           14 AKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence            35667789999999998776631 111111               678888888888875   67788888888888   


Q ss_pred             -cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHH
Q 037164           74 -TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKK  148 (250)
Q Consensus        74 -~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~  148 (250)
                       .+++++|.+.|+...+.+   +...+..+-..|..    .+++++|.+.|++.... +   +...+..+        ..
T Consensus        90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l--------g~  154 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL--------GS  154 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH--------HH
T ss_pred             cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH--------HH
Confidence             888888888888877764   67778888888888    88888888888888765 4   12222111        00


Q ss_pred             HH-hhhhccCCchhhhcchhHHHHHHHHHhccCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcch
Q 037164          149 SE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VFNKGYMTMMGLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLP  222 (250)
Q Consensus       149 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~  222 (250)
                      +. .+.    .      ..++.+++.+.++.... .+...+..+-..|..    .++.++|...|++....+.   ...+
T Consensus       155 ~~~~~~----~------~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~  221 (273)
T 1ouv_A          155 LYDAGR----G------TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGC  221 (273)
T ss_dssp             HHHHTS----S------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred             HHHcCC----C------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHH
Confidence            00 000    0      12334444444443322 344667778888888    9999999999999886643   5678


Q ss_pred             HHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164          223 SSLIDAHCK----NGLLEKAQSLINHAETKK  249 (250)
Q Consensus       223 ~~li~~~~~----~g~~~~a~~~~~~m~~~g  249 (250)
                      ..|-..|.+    .+++++|...+++..+.|
T Consensus       222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888888998    999999999999988765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.12  E-value=2.7e-08  Score=78.93  Aligned_cols=82  Identities=10%  Similarity=0.045  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CCcchHHHHHHHHhcCChhHHHH
Q 037164          167 DQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN-LPY--DFGLPSSLIDAHCKNGLLEKAQS  240 (250)
Q Consensus       167 ~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~  240 (250)
                      ++.+++...++..   .+.+...|..++..+.+.|++++|..+|++..... .+|  ....|..++..+.+.|+.+.|..
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~  262 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444444444433   23455888999999999999999999999998763 455  35689999999999999999999


Q ss_pred             HHHHHHhc
Q 037164          241 LINHAETK  248 (250)
Q Consensus       241 ~~~~m~~~  248 (250)
                      +++++.+.
T Consensus       263 ~~~~a~~~  270 (308)
T 2ond_A          263 VEKRRFTA  270 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.12  E-value=5.8e-10  Score=87.99  Aligned_cols=193  Identities=11%  Similarity=-0.003  Sum_probs=138.6

Q ss_pred             hhHHHHHHHHHHHCCCCccH--HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRT--IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~--~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      .+.|+..+++...  ..|+.  ...-.+..+|...|+++.|..-++.    .-.|+..++..+...+...++.++|.+.+
T Consensus        15 y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l   88 (291)
T 3mkr_A           15 YQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAEL   88 (291)
T ss_dssp             HHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred             HHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            5667776666544  33543  3556678899999999999986653    24567788999999999999999999999


Q ss_pred             HHHhhCCCCCccHHH-HHHH---------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--C
Q 037164          120 NMTESNPQMVLDFNL-LAVL---------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--V  182 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~-~~~l---------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~  182 (250)
                      +++... +..|+... +..+         .++|.+.+++      |.....     ..|...++.+++.+.++....  |
T Consensus        89 ~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  161 (291)
T 3mkr_A           89 DREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE  161 (291)
T ss_dssp             HHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence            999776 55554332 2222         7888888876      222211     022267777777777766543  4


Q ss_pred             ChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          183 FNKGY---MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       183 ~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +....   ...+..+...|++++|..+|+++... .+.+..+++.+..+|.+.|++++|...++++++.
T Consensus       162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            43211   22334444568999999999999965 5668889999999999999999999999998763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.10  E-value=5.4e-09  Score=78.70  Aligned_cols=157  Identities=13%  Similarity=-0.021  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc-----------CChhHHHHHHHHHhhCCC
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA-----------SDIHGMDKIINMTESNPQ  127 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~-----------~~~~~a~~~~~~m~~~~g  127 (250)
                      .+...+..+-.++.+.|++++|...+++..+.+ +.+...|..+-..+.+.           |++++|...+++....  
T Consensus        37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--  113 (217)
T 2pl2_A           37 QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--  113 (217)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--
Confidence            445666666666677777777777776655532 12345566666666666           6777777766665432  


Q ss_pred             CCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 037164          128 MVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLD  198 (250)
Q Consensus       128 ~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  198 (250)
                      -+-+...+..+         .++|...|++.....                            .+...+..+-..|...|
T Consensus       114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~la~~~~~~g  165 (217)
T 2pl2_A          114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----------------------------DTPEIRSALAELYLSMG  165 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------------------------cchHHHHHHHHHHHHcC
Confidence            11112222211         333333333322111                            23456778888999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          199 DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++++|...|++.... .+.+...+..+...+.+.|++++|...+++...
T Consensus       166 ~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          166 RLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred             CHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999998753 344677888899999999999999999887643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.10  E-value=1.4e-08  Score=73.88  Aligned_cols=165  Identities=12%  Similarity=-0.043  Sum_probs=118.8

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      -++.+|..|-..|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.++..... .- .+...+..+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~   79 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DT-TSAEAYYIL   79 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-CCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-Cc-hhHHHHHHH
Confidence            367889999999999999999999999877652 235678888999999999999999999988654 11 122222111


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH---hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY---GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                              ..             .+...++.+.+.+.+   ....+.+...+..+-..|.+.|++++|+..|++.... .
T Consensus        80 --------~~-------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~  137 (184)
T 3vtx_A           80 --------GS-------------ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-K  137 (184)
T ss_dssp             --------HH-------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             --------HH-------------HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-c
Confidence                    00             000111111112222   2223344567888889999999999999999998854 3


Q ss_pred             CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          216 PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       216 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +.+..+|..+-..|.+.|++++|...|++.++.
T Consensus       138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            446788999999999999999999999998763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=4.1e-09  Score=82.83  Aligned_cols=204  Identities=12%  Similarity=0.008  Sum_probs=124.3

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEE   89 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~   89 (250)
                      +-..+...|++++|..+|++....               +.+......+....++..+...|...|++++|.+++++..+
T Consensus        33 l~~~~~~~g~~~~A~~~~~~a~~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           33 LVIQYASQGRYEVAVPLCKQALED---------------LEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH---------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334555667777777766665542               11111112233456777788888888888888888887655


Q ss_pred             c------CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-----CCCcc-HHHHHHH---------HHHHHHHHH
Q 037164           90 K------SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNP-----QMVLD-FNLLAVL---------LYMAMTMLK  147 (250)
Q Consensus        90 ~------gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-----g~~~~-~~~~~~l---------~~~a~~~~~  147 (250)
                      .      +-.| ...+|..+...|...|++++|.+.+++.....     +..|+ ...+..+         +++|.+.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3      2222 34567777788888888888888888765420     11121 2222222         444554444


Q ss_pred             HHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------
Q 037164          148 KSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--------------  213 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------  213 (250)
                      +..........                   ...+.....+..+...|.+.|++++|...+++....              
T Consensus       178 ~a~~~~~~~~~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          178 RALEIYQTKLG-------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHHHTSC-------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            44322110000                   000012356777778888888888888888887642              


Q ss_pred             ----------------------------------CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          214 ----------------------------------NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       214 ----------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                                                        ..+.+..++..+...|.+.|++++|..++++..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                              1233456788899999999999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=2.2e-09  Score=83.12  Aligned_cols=188  Identities=13%  Similarity=0.022  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc------CCCC-CchhHhhhHHHHHhcCChhH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK------SING-DQFTLGIRPSAYAAASDIHG  114 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------gi~p-~~~ty~~li~~~~~~~~~~~  114 (250)
                      .++|++++++....+-+....++..+..+|...|++++|..++++..+.      +-.| ...+|..+...|...|++++
T Consensus        24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  103 (283)
T 3edt_B           24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE  103 (283)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence            4455555666654444456788899999999999999999999987654      2223 35678888899999999999


Q ss_pred             HHHHHHHHhhC------CCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc
Q 037164          115 MDKIINMTESN------PQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT  179 (250)
Q Consensus       115 a~~~~~~m~~~------~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (250)
                      |.+.+++....      +..+....++..+         +++|...+++..........                   ..
T Consensus       104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~  164 (283)
T 3edt_B          104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-------------------PD  164 (283)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-------------------TT
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------------------CC
Confidence            99999887542      0111222333333         55555555555432110000                   00


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------------------
Q 037164          180 RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK----------------------------------------------  213 (250)
Q Consensus       180 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------------------------  213 (250)
                      .+.....+..+...|.+.|++++|...+++....                                              
T Consensus       165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence            0012356777778888888888888888886642                                              


Q ss_pred             --CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          214 --NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       214 --~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                        ..+....++..+...|...|++++|..++++.++.
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              11123446888999999999999999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.05  E-value=2e-08  Score=75.03  Aligned_cols=166  Identities=8%  Similarity=-0.080  Sum_probs=122.1

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +.+..+|..+...|...|++++|.++++...+.. +.+...|..+...|...|++++|.+.+++....  .+.+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~   81 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNN   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHH
Confidence            3456788999999999999999999999988752 345778999999999999999999999998653  1223333322


Q ss_pred             HHHHHHHHHHHHHhhhhccCCchhhhcch-hHHHHHHHHHhccC---C-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          138 LLYMAMTMLKKSEGLIATKRNSSNAFELK-DQLYRIWKHYGQTR---K-V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      +.        .             .|... ++.+++.+.++...   . | +...+..+...+.+.|++++|...++++.
T Consensus        82 l~--------~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           82 YG--------W-------------FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             HH--------H-------------HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HH--------H-------------HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            20        0             11122 33333333332221   1 2 24778888899999999999999999988


Q ss_pred             hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ... +.+...+..+...|.+.|++++|..+++++.+.
T Consensus       141 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          141 AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            543 345778999999999999999999999988753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.04  E-value=2.2e-08  Score=75.29  Aligned_cols=176  Identities=11%  Similarity=-0.059  Sum_probs=127.9

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +++...+..+-..+.+.|++++|...|+...+. -+.+...|..+-.++.+.|++++|...+++....  -+.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            567889999999999999999999999987764 2235678888899999999999999999998653  1222333322


Q ss_pred             HHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037164          138 LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN  214 (250)
Q Consensus       138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  214 (250)
                      +   +. ++.....   ....   .+...++.+++...++...   +.+...|..+-..+...|++++|...|++.....
T Consensus        79 l---g~-~~~~~~~---~~~~---~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           79 L---SE-AYVALYR---QAED---RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             H---HH-HHHHHHH---TCSS---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             H---HH-HHHHhhh---hhhh---hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            2   00 0001000   0000   1112356666666665542   2345778888899999999999999999998766


Q ss_pred             CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          215 LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       215 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                        .+...+..+-..|...|++++|...+++..+.
T Consensus       149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              67889999999999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.02  E-value=2.8e-08  Score=75.91  Aligned_cols=159  Identities=9%  Similarity=-0.030  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--  138 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--  138 (250)
                      ...|..+...|...|++++|.+++++..+.. +.+...|..+...|...|++++|.+.++++...  .+.+...+..+  
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence            6788999999999999999999999988763 346788899999999999999999999998654  12233333332  


Q ss_pred             -------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          139 -------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       139 -------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                             .++|.+.++++..  .+                       ..+.+...+..+...+.+.|++++|...+++..
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~--~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQ--DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTT--CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHh--Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   4444444444332  00                       011234677888899999999999999999988


Q ss_pred             hCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          212 SKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       212 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ... +.+..++..+...|...|++++|..+++++.+.
T Consensus       169 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  204 (252)
T 2ho1_A          169 RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG  204 (252)
T ss_dssp             HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            543 345778999999999999999999999998754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.02  E-value=2e-08  Score=72.48  Aligned_cols=155  Identities=13%  Similarity=0.040  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---  138 (250)
                      ..|..+...+...|++++|.+++++..+. -+.+..+|..+...+...|++++|.+.+++....  .+.+...+..+   
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   85 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            44555666666667777777766655433 1224555666666666777777777776665442  11122222211   


Q ss_pred             ------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          139 ------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                            .++|.+.+++...                           ..+.+...+..+...+.+.|++++|...+++...
T Consensus        86 ~~~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAE---------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHh---------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence                  2222222222111                           1123345677788888999999999999999875


Q ss_pred             CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .. +.+..++..+...|...|++++|...+++..+
T Consensus       139 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          139 LR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            43 44567888889999999999999999988765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.00  E-value=1.4e-10  Score=95.29  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +++|.++++++.      +..+|..|..++.+.|++++|.+.|..      .+|..+|..++.++...|++++|.+.++.
T Consensus        19 ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           19 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            688889999883      335999999999999999999999974      36888999999999999999999998887


Q ss_pred             HhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccCCCChh
Q 037164          122 TESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      .++.   .+++.+.+.+         +.++.++++.      |+..   +|.       ..+..+++...+...     .
T Consensus        87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~---a~~~IGd~~~~~g~yeeA~~~Y~~a-----~  149 (449)
T 1b89_A           87 ARKK---ARESYVETELIFALAKTNRLAELEEFING------PNNA---HIQQVGDRCYDEKMYDAAKLLYNNV-----S  149 (449)
T ss_dssp             -------------------------CHHHHTTTTTC------C-------------------CTTTHHHHHHHT-----T
T ss_pred             HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHH---HHHHHHHHHHHcCCHHHHHHHHHHh-----h
Confidence            7653   2334444444         3333333321      2221   333       666666666666644     5


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                      .|..+.+++.+.|++++|.+.+.++      .++.+|..++.+|+..|+++.|..+.
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~  200 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG  200 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence            8999999999999999999999988      27899999999999999999997543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.99  E-value=6.5e-08  Score=79.14  Aligned_cols=213  Identities=9%  Similarity=-0.036  Sum_probs=144.7

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcc-ccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~   77 (250)
                      -.++.+.|++++|.+.|+......|+ ...|.            .++|+..|++..+.+ +-+...|+.+-.++.+.|++
T Consensus       104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~  182 (382)
T 2h6f_A          104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDP  182 (382)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCH
Confidence            34667789999999999988777444 33333            678888898888764 44678888888889999999


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccC
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKR  157 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~  157 (250)
                      ++|+..|+...+.+ +-+...|..+-.++.+.|++++|...++++...  -+-+...|+.+   +. ++..+.     ..
T Consensus       183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~l---g~-~l~~l~-----~~  250 (382)
T 2h6f_A          183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQR---YF-VISNTT-----GY  250 (382)
T ss_dssp             TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHH---HH-HHHHTT-----CS
T ss_pred             HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHH---HH-HHHHhc-----Cc
Confidence            99999999877752 226678888888899999999999999887653  11233333222   00 011100     00


Q ss_pred             CchhhhcchhH-HHHHHHHHhc---cCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Q 037164          158 NSSNAFELKDQ-LYRIWKHYGQ---TRKVFNKGYMTMMGLLLKLD--DVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK  231 (250)
Q Consensus       158 ~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  231 (250)
                      .       ... +.+..+.++.   ..+.+...|+.+-..+.+.|  +.++|.+.+.++  ...+.+...+..|...|.+
T Consensus       251 ~-------~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~  321 (382)
T 2h6f_A          251 N-------DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYED  321 (382)
T ss_dssp             C-------SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHH
T ss_pred             c-------hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence            0       000 1111122222   22234578888888888888  689999999887  3344566778899999988


Q ss_pred             cC---------ChhHHHHHHHHH
Q 037164          232 NG---------LLEKAQSLINHA  245 (250)
Q Consensus       232 ~g---------~~~~a~~~~~~m  245 (250)
                      .|         .+++|..+++++
T Consensus       322 ~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          322 MLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HhcccccchHHHHHHHHHHHHHH
Confidence            74         358999999998

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.90  E-value=1e-08  Score=81.11  Aligned_cols=237  Identities=11%  Similarity=-0.048  Sum_probs=158.3

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHC----CCC-ccHHHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDM----GFA-RRTIYCYIMMIL   70 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~   70 (250)
                      ..+.+.|++++|..+|++.....|+.     ..|.           .++|...|++..+.    +-. ....++..+...
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~   92 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT   92 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            35678899999999999987764442     1222           78888888876442    222 235678889999


Q ss_pred             HhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCC--------------------hhHHHHHHHHHhhC
Q 037164           71 NYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASD--------------------IHGMDKIINMTESN  125 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~--------------------~~~a~~~~~~m~~~  125 (250)
                      |...|++++|.+.+++..+..- .++    ..++..+...|...|+                    +++|.+.+++....
T Consensus        93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~  172 (338)
T 3ro2_A           93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL  172 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998654311 122    3478888899999999                    99999998876321


Q ss_pred             ---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCch---hhhc-------chhHHHHHHHHHhccCC-
Q 037164          126 ---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSS---NAFE-------LKDQLYRIWKHYGQTRK-  181 (250)
Q Consensus       126 ---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~-  181 (250)
                         .+..+. ..++..+         .++|...+++............   ..+.       ..++.+++.+.++.... 
T Consensus       173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               011111 1223333         7888888887763322111100   0111       55555666555544311 


Q ss_pred             --------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          182 --------VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN----L-PYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       182 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                              ....++..+...+...|++++|...+++.....    . .....++..+...|.+.|++++|...+++..+.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                    114567778889999999999999999876421    1 112447788999999999999999999988753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.89  E-value=1.2e-08  Score=83.75  Aligned_cols=236  Identities=11%  Similarity=-0.043  Sum_probs=160.4

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc-----ccc-----------hhHHHHHHHHHHHC----C-CCccHHHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL-----FFG-----------VGKAEMVVQEMKDM----G-FARRTIYCYIMMIL   70 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-----~y~-----------~~~A~~~~~~m~~~----~-~~p~~~~y~~li~~   70 (250)
                      ..+.+.|++++|..+|+......|+..     .|.           .++|...|++..+.    + -+....++..+...
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            356788999999999999887744422     222           78888888887553    1 13345788899999


Q ss_pred             HhhcCChhhHHHHHHHHHhc----CCC-CCchhHhhhHHHHHhcCC-----------------hhHHHHHHHHHhhC---
Q 037164           71 NYLTGNREKIDALMLEMEEK----SIN-GDQFTLGIRPSAYAAASD-----------------IHGMDKIINMTESN---  125 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~----gi~-p~~~ty~~li~~~~~~~~-----------------~~~a~~~~~~m~~~---  125 (250)
                      |...|++++|.+.+++..+.    +-. ....+|..+-..|...|+                 +++|.+.+++....   
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~  215 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD  215 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986543    111 234578888899999999                 99999998876431   


Q ss_pred             CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCc----h------hhhcchhHHHHHHHHHhccCC----
Q 037164          126 PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNS----S------NAFELKDQLYRIWKHYGQTRK----  181 (250)
Q Consensus       126 ~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~----  181 (250)
                      .+..+. ..++..+         +++|...+++...........    .      ..|...++.+++.+.++....    
T Consensus       216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  295 (411)
T 4a1s_A          216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE  295 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            011111 1233333         788888888876332211110    0      011155666666655544321    


Q ss_pred             -----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 -----VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-----PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                           .....+..+-..|...|++++|...+++......     .....++..+...|.+.|++++|...+++..+
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                 1146777888999999999999999998764211     11244788899999999999999999998765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=7.6e-08  Score=65.49  Aligned_cols=131  Identities=13%  Similarity=-0.010  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM  141 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~  141 (250)
                      ..|..+...|...|++++|.++++++.+.+ +.+...|..+...+...|++++|.++++++... +  |           
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--~-----------   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--P-----------   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--T-----------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C--C-----------
Confidence            357788888999999999999999987753 336677888889999999999999998887543 1  0           


Q ss_pred             HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 037164          142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGL  221 (250)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  221 (250)
                                                              .+...+..+...+...|++++|..+++++.... +.+..+
T Consensus        67 ----------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  105 (136)
T 2fo7_A           67 ----------------------------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEA  105 (136)
T ss_dssp             ----------------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             ----------------------------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence                                                    112345667778888899999999998887542 345677


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          222 PSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       222 ~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      +..+...|.+.|++++|...++++.+.
T Consensus       106 ~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          106 WYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            888888899999999999998887654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.87  E-value=2.2e-08  Score=81.62  Aligned_cols=236  Identities=11%  Similarity=-0.036  Sum_probs=159.4

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-----cccc-----------hhHHHHHHHHHHHC----CCCc-cHHHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-----LFFG-----------VGKAEMVVQEMKDM----GFAR-RTIYCYIMMIL   70 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-----~~y~-----------~~~A~~~~~~m~~~----~~~p-~~~~y~~li~~   70 (250)
                      ..+.+.|++++|..+|+......|+.     ..|.           .++|...|++..+.    +-.| ...++..+...
T Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~   96 (406)
T 3sf4_A           17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT   96 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            46778899999999999987774442     1222           78888888876442    2222 35678889999


Q ss_pred             HhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCC--------------------hhHHHHHHHHHhhC
Q 037164           71 NYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASD--------------------IHGMDKIINMTESN  125 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~--------------------~~~a~~~~~~m~~~  125 (250)
                      |...|++++|...+++..+..- .++    ..++..+-..|...|+                    +++|.+.+++....
T Consensus        97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  176 (406)
T 3sf4_A           97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL  176 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998654310 012    4478888899999999                    99999998875331


Q ss_pred             ---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCch---hhhc-------chhHHHHHHHHHhccC--
Q 037164          126 ---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSS---NAFE-------LKDQLYRIWKHYGQTR--  180 (250)
Q Consensus       126 ---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~--  180 (250)
                         .+..|. ..++..+         .++|...+++............   ..+.       ..++.+++...++...  
T Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence               022222 2233333         7888888888774332211100   0111       5555566655554431  


Q ss_pred             -----C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          181 -----K--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD----FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       181 -----~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                           .  ....++..+-..|.+.|++++|...+++...... .++    ..++..+...|...|++++|...+++..+
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 1  1145777888999999999999999998764311 111    55788899999999999999999998764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.87  E-value=6.7e-08  Score=81.39  Aligned_cols=193  Identities=8%  Similarity=-0.095  Sum_probs=129.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh-hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR-EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      +++|...+++.... -+.+...+..+-.+|...|++ ++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66777777776554 345788889999999999999 99999999877652 2246788889999999999999999999


Q ss_pred             HHhhCCCCCccHHHHHHH------------------HHHHHHHHHHHHhhhhccCCchhhhc-------ch--------h
Q 037164          121 MTESNPQMVLDFNLLAVL------------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LK--------D  167 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l------------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~--------~  167 (250)
                      +....   .|+...+..+                  +++|.+.+++..... |....  .|.       ..        +
T Consensus       162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGR--SWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH--HHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHHHHHhhccccc
Confidence            98754   3554444444                  345555555555332 22221  222       33        6


Q ss_pred             HHHHHHHHHhccCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          168 QLYRIWKHYGQTRK--V----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       168 ~~~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      +.+++.+.++....  |    +...|..+-..|...|++++|...|++..... +.+...+..+...+...|++++|...
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655422  3    44667777777777788888888877766432 22445667777777777777777765


Q ss_pred             HH
Q 037164          242 IN  243 (250)
Q Consensus       242 ~~  243 (250)
                      +.
T Consensus       315 ~~  316 (474)
T 4abn_A          315 KG  316 (474)
T ss_dssp             TT
T ss_pred             hc
Confidence            43

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.86  E-value=5.8e-08  Score=73.48  Aligned_cols=159  Identities=13%  Similarity=-0.020  Sum_probs=102.9

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      ....+|..+...+.+.|++++|..+|++..+. -+.+...+..+...+...|++++|.+.+++....  .+.+...+..+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l   97 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA   97 (243)
T ss_dssp             ---------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence            45678888899999999999999999998774 3346788888999999999999999999998654  12233333222


Q ss_pred             ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164          139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN  209 (250)
Q Consensus       139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  209 (250)
                               .++|.+.+++...                           ..+.+...+..+...+.+.|++++|...+++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALR---------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH---------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                     3333333333221                           2223456788888999999999999999999


Q ss_pred             HHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          210 WTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       210 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .... .+.+...+..+...|.+.|++++|...++++.+.
T Consensus       151 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          151 AVEL-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHh-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8854 3346778999999999999999999999988754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=9.2e-07  Score=68.44  Aligned_cols=177  Identities=10%  Similarity=-0.005  Sum_probs=128.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChh
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIH  113 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~  113 (250)
                      .++|...|++..+.   .+..++..+-..|..    .+++++|.+.|++..+.+   +...+..+-..|..    .++++
T Consensus        22 ~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~   95 (273)
T 1ouv_A           22 FTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTN   95 (273)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHH
Confidence            78899999998884   356778888888888    999999999999887775   67788888888888    99999


Q ss_pred             HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC-CChhhHHHHH
Q 037164          114 GMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VFNKGYMTMM  191 (250)
Q Consensus       114 ~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li  191 (250)
                      +|.+.|++.... +   +...+..+        ..+. .+.    .      ..++.+++.+.++.... .+...+..+-
T Consensus        96 ~A~~~~~~a~~~-~---~~~a~~~l--------g~~~~~~~----~------~~~~~~~A~~~~~~a~~~~~~~a~~~lg  153 (273)
T 1ouv_A           96 KALQYYSKACDL-K---YAEGCASL--------GGIYHDGK----V------VTRDFKKAVEYFTKACDLNDGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHHHT-T---CHHHHHHH--------HHHHHHCS----S------SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHc-C---CccHHHHH--------HHHHHcCC----C------cccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            999999988776 5   22222222        0000 000    0      12333444444433322 2445667777


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164          192 GLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKAQSLINHAETKK  249 (250)
Q Consensus       192 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  249 (250)
                      ..|..    .++.++|...|++....+   +...+..+-..|..    .+++++|...+++..+.|
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            77877    899999999999988664   45778889999999    999999999999987764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.81  E-value=3e-07  Score=76.83  Aligned_cols=227  Identities=12%  Similarity=0.002  Sum_probs=134.4

Q ss_pred             cChhHHHHHHHHhhhhhcccc-ccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChh
Q 037164           18 HGVEQAEIYFDNISKLLRQCL-FFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNRE   78 (250)
Q Consensus        18 ~~~~~a~~~f~~~~~~~~~~~-~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~   78 (250)
                      +++++|...|++.....|+.. .+.              .++|++.|++..+.+ +.+..++..+...+..    .|+++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~  230 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG  230 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence            468999999999877755432 222              467888888887753 3456666666555544    46778


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH--------------------
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL--------------------  138 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l--------------------  138 (250)
                      +|.+++++..... +.+..++..+-..|.+.|++++|.+.+++....  .+-+..++..+                    
T Consensus       231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~  307 (472)
T 4g1t_A          231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMY  307 (472)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            9999999876652 335677888999999999999999999998653  22233333332                    


Q ss_pred             --------HHHHHHHHHHHHhhhhccCCch-----hhhcchhHHHHHHHHHhccCC--CChh----hHHHHHH-HHHhcC
Q 037164          139 --------LYMAMTMLKKSEGLIATKRNSS-----NAFELKDQLYRIWKHYGQTRK--VFNK----GYMTMMG-LLLKLD  198 (250)
Q Consensus       139 --------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~li~-~~~~~g  198 (250)
                              .++|...+++..... |.....     ..|...++.+++.+.++....  ++..    .+..+.. .+...|
T Consensus       308 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~  386 (472)
T 4g1t_A          308 GKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK  386 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence                    345555555554322 222211     011166677777777655421  2221    1222222 235678


Q ss_pred             CHHHHHHHHHHHHhCC-----------------------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          199 DVKGAEKTLRNWTSKN-----------------------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      +.++|+..|++.....                       .+.+..+|+.|-..|...|++++|.+.|++.++.|
T Consensus       387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            8999988887765322                       34567889999999999999999999999888754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.79  E-value=6.2e-07  Score=69.06  Aligned_cols=181  Identities=7%  Similarity=-0.093  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKII  119 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~  119 (250)
                      .++|..+|++..+.. +.+..++..+..+|.+.|++++|.+.++...+.+-.|+.  .+|..+...|...|++++|.+.+
T Consensus        19 ~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   97 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY   97 (272)
T ss_dssp             HHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            677888888887753 334557777777888888888888888877764322222  22677778888888888888888


Q ss_pred             HHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHh
Q 037164          120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLK  196 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~  196 (250)
                      ++....  .+.+...+..+   +                 . .|...++.+++.+.++....  | +...|..+-..+..
T Consensus        98 ~~a~~~--~~~~~~~~~~l---~-----------------~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           98 QAAVDR--DTTRLDMYGQI---G-----------------S-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHH--STTCTHHHHHH---H-----------------H-HHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHhc--CcccHHHHHHH---H-----------------H-HHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            876543  11111222111   0                 0 22255566666666655533  3 33556666524445


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC---hhHHHHHHHHHHh
Q 037164          197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGL---LEKAQSLINHAET  247 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~  247 (250)
                      .+++++|...|++.... .+.+...+..+...+...|+   +++|...+++..+
T Consensus       155 ~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            56999999999998854 23346777888888888888   8889888888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.79  E-value=1.7e-06  Score=73.76  Aligned_cols=198  Identities=7%  Similarity=-0.003  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhh-------cCChh-------hHHHHHHHHHhcCCCC-CchhHhhhHHHHHh
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYL-------TGNRE-------KIDALMLEMEEKSING-DQFTLGIRPSAYAA  108 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~-------~g~~~-------~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~  108 (250)
                      +|..+|++.... .+-+...|..+...+.+       .|+++       +|..++++-.+. +.| +...|..+...+.+
T Consensus       256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence            566788888775 34567888888888875       79987       899999976653 344 57889999999999


Q ss_pred             cCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc--------chhHHHH
Q 037164          109 ASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE--------LKDQLYR  171 (250)
Q Consensus       109 ~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  171 (250)
                      .|++++|.++|++....+...| ...|...         +++|.++|++..... |... . .|.        ..++.++
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~-~-~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-H-VYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT-H-HHHHHHHHHHHHTCCHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch-H-HHHHHHHHHHHHcCChhH
Confidence            9999999999999876411112 1234333         788888888887543 2222 1 221        3455666


Q ss_pred             HHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC--CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          172 IWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD--FGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       172 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      +...++..   .+.+...|..++..+.+.|+.++|..+|++....+. .|+  ..+|...+......|+.+.+..+.+++
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666544   234568899999999999999999999999986532 222  337888888888999999999999987


Q ss_pred             Hh
Q 037164          246 ET  247 (250)
Q Consensus       246 ~~  247 (250)
                      .+
T Consensus       490 ~~  491 (530)
T 2ooe_A          490 FT  491 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.78  E-value=1.7e-06  Score=72.95  Aligned_cols=28  Identities=14%  Similarity=0.013  Sum_probs=12.6

Q ss_pred             cchHHHHHHHHh----cCChhHHHHHHHHHHh
Q 037164          220 GLPSSLIDAHCK----NGLLEKAQSLINHAET  247 (250)
Q Consensus       220 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~  247 (250)
                      ..+..|-..|..    .+++++|...|++..+
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            344444444444    4444444444444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.78  E-value=1.5e-06  Score=73.34  Aligned_cols=79  Identities=11%  Similarity=0.018  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhccCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHH
Q 037164          168 QLYRIWKHYGQTRK-VFNKGYMTMMGLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKA  238 (250)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a  238 (250)
                      +..++.+.++.... .+...+..+-..|..    .++.++|...|++....+   +...+..|-..|.+    .+++++|
T Consensus       346 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A  422 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA  422 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            55566666555433 345666666667766    678888888888877654   45667777777777    7888888


Q ss_pred             HHHHHHHHhcC
Q 037164          239 QSLINHAETKK  249 (250)
Q Consensus       239 ~~~~~~m~~~g  249 (250)
                      ...|++..+.|
T Consensus       423 ~~~~~~A~~~~  433 (490)
T 2xm6_A          423 WAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
Confidence            88888776643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.78  E-value=1e-07  Score=74.72  Aligned_cols=171  Identities=15%  Similarity=0.035  Sum_probs=120.9

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-------CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-----
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEK-------SINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-----  125 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-------gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-----  125 (250)
                      +.+..++..+...|...|++++|..++++..+.       .-.....++..+...|...|++++|.+.+++....     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            445678999999999999999999999998763       23335577888999999999999999999987543     


Q ss_pred             -CCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 037164          126 -PQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLL  195 (250)
Q Consensus       126 -~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  195 (250)
                       ...+....++..+         .++|...+.+........                   .....+.....+..+...+.
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------------LGKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------------cCCCChHHHHHHHHHHHHHH
Confidence             0112222333333         455555555544221100                   00000122366788889999


Q ss_pred             hcCCHHHHHHHHHHHHhC------C-CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          196 KLDDVKGAEKTLRNWTSK------N-LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       196 ~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..|++++|..++++....      + .+....++..+...|...|++++|..+++++.+
T Consensus       165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999998753      2 222355788899999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.76  E-value=3.6e-07  Score=80.65  Aligned_cols=163  Identities=7%  Similarity=-0.068  Sum_probs=119.6

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLL  135 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~  135 (250)
                      +-++.+|+.|-.+|.+.|++++|.+.|++..+.  .| +...|+.+-.+|.+.|++++|.+.|++..+.   .|+ ...|
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~   80 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY   80 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence            345788999999999999999999999987664  44 4678889999999999999999999987642   232 3333


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      ..+        .            . +|...++.+++.+.+++.   .+.+...|+.+-..|.+.|++++|+..|++...
T Consensus        81 ~nL--------g------------~-~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           81 SNM--------G------------N-TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHH--------H------------H-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHH--------H------------H-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            322        0            0 111223333333333322   123347788999999999999999999999885


Q ss_pred             CCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          213 KNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       213 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .. +-+...+..|...|...|++++|.+.++++.+
T Consensus       140 l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          140 LK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             hC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            42 33567899999999999999999999988765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.73  E-value=1.2e-06  Score=69.28  Aligned_cols=186  Identities=6%  Similarity=-0.024  Sum_probs=135.4

Q ss_pred             hHHHHHHHHhhhhhcc-ccccc------h-------------------hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164           21 EQAEIYFDNISKLLRQ-CLFFG------V-------------------GKAEMVVQEMKDMGFARRTIYCYIMMILNYLT   74 (250)
Q Consensus        21 ~~a~~~f~~~~~~~~~-~~~y~------~-------------------~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~   74 (250)
                      ++|...|+......|+ +..|.      .                   ++|..+|++..+.--+-+...|..+...+.+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            6778888887766333 33333      1                   78999999998831234566899999999999


Q ss_pred             CChhhHHHHHHHHHhcCCCCCch--hHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------HHHH
Q 037164           75 GNREKIDALMLEMEEKSINGDQF--TLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL----------LYMA  142 (250)
Q Consensus        75 g~~~~a~~~~~~m~~~gi~p~~~--ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------~~~a  142 (250)
                      |++++|.++|++..+  +.|+..  .|..+...+.+.|++++|.++|++.... . +++...|...          .++|
T Consensus       113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999998876  566543  7999999999999999999999998764 1 2233333222          5678


Q ss_pred             HHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC-----CC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164          143 MTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR-----KV--FNKGYMTMMGLLLKLDDVKGAEKTLR  208 (250)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~  208 (250)
                      ..+|++..... |....  .+.       ..++.+++...++...     +|  ....|..++..+.+.|+.+.|..+++
T Consensus       189 ~~~~~~al~~~-p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHH-TTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888877543 33331  332       5567777776665542     23  34688899999999999999999999


Q ss_pred             HHHhC
Q 037164          209 NWTSK  213 (250)
Q Consensus       209 ~m~~~  213 (250)
                      ++...
T Consensus       266 ~a~~~  270 (308)
T 2ond_A          266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.73  E-value=5.6e-07  Score=73.31  Aligned_cols=212  Identities=10%  Similarity=0.028  Sum_probs=130.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccc----c--c-cc------------hhHHH-----------HHHHHHHHCCCCccHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQC----L--F-FG------------VGKAE-----------MVVQEMKDMGFARRTI   62 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~----~--~-y~------------~~~A~-----------~~~~~m~~~~~~p~~~   62 (250)
                      .+-+.+++++|..+++++....+..    .  . |.            ++.+.           +.++++....  ++..
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~   98 (383)
T 3ulq_A           21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT   98 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence            4557899999999999998774332    1  1 11            34444           6666664421  1111


Q ss_pred             H------HHHHHHHHhhcCChhhHHHHHHHHHhc--CCC--C-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCC-CC--
Q 037164           63 Y------CYIMMILNYLTGNREKIDALMLEMEEK--SIN--G-DQFTLGIRPSAYAAASDIHGMDKIINMTESNP-QM--  128 (250)
Q Consensus        63 ~------y~~li~~~~~~g~~~~a~~~~~~m~~~--gi~--p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~-g~--  128 (250)
                      .      +...-..+...|++++|.+.+++..+.  .+.  + ...+|..+-..|...|+++.|.+.+++..... ..  
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            1      122445678899999999999987653  111  1 23678888899999999999999998864320 11  


Q ss_pred             -Ccc-HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 037164          129 -VLD-FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKL  197 (250)
Q Consensus       129 -~~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  197 (250)
                       .+. ..++..+         +++|.+.+.+............                     ....++..+-..|...
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ---------------------LMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------------HHHHHHHHHHHHHHHC
Confidence             111 1222222         5666666655543221111100                     1124566677777788


Q ss_pred             CCHHHHHHHHHHHHhC----CC-CCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          198 DDVKGAEKTLRNWTSK----NL-PYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       198 g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      |++++|...+++....    +. +....++..+...|.+.|++++|...+++..+
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888887776541    22 33455677777778888888888887777654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.70  E-value=4e-07  Score=61.80  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=84.7

Q ss_pred             hhHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           11 LNLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        11 l~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      ...+.+.|++++|.++|+.+....|+ ...+.           .++|..+|+++.+.+ +.+...+..+...+.+.|+++
T Consensus         8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~   86 (136)
T 2fo7_A            8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYD   86 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHH
Confidence            45677889999999999988766332 22222           788888888887753 445677888888888888888


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +|.++++++.+.. +.+..++..+...+.+.|++++|.+.++++..
T Consensus        87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            8888888877653 33567777888888888888888888887754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.69  E-value=6.3e-07  Score=73.02  Aligned_cols=161  Identities=9%  Similarity=-0.071  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCcc-H
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLD-F  132 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~-~  132 (250)
                      .+++.+-.+|...|++++|.+.+++..+.    +-.+ ...+|..+-.+|...|++++|.+.+++....   .+..|+ .
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            45555666666666666666666654332    1000 1125555666666666666666666654330   011111 2


Q ss_pred             HHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCC---
Q 037164          133 NLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDD---  199 (250)
Q Consensus       133 ~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~---  199 (250)
                      .++..+         .++|...+++.....                       .....+. ...+..+-..+...|+   
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~  321 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYS-----------------------QKAGDVIYLSEFEFLKSLYLSGPDEEA  321 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------HHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence            222222         333333333332111                       1111111 1235566677788888   


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +++|..++++..  ..+.....+..|-..|...|++++|...+++..+
T Consensus       322 ~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          322 IQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777777776642  1222344677788889999999999999988765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.69  E-value=1.9e-06  Score=62.44  Aligned_cols=130  Identities=8%  Similarity=-0.072  Sum_probs=83.4

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      -+..+|..+..+|.+.|++++|...+....... +.+...+..+...+...++++.+.+.+++....  .+.+...+..+
T Consensus        37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~l  113 (184)
T 3vtx_A           37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKL  113 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence            456778888888888888888888888776652 224566666778888888888888888877543  11222222221


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                         +                 . .|...++.+++.+.++..   .+.+...|..+-.+|.+.|++++|...|++..+
T Consensus       114 ---g-----------------~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          114 ---G-----------------L-VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             ---H-----------------H-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---H-----------------H-HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence               0                 0 111222223333333222   223446788899999999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.65  E-value=1.8e-06  Score=64.93  Aligned_cols=163  Identities=12%  Similarity=-0.071  Sum_probs=86.9

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCc-cHHHHHHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVL-DFNLLAVL  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~~~~l  138 (250)
                      |+..+..+-..|.+.|++++|.+.|+...+..-.++...+..+-.++.+.|++++|.+.+++....   .| +...+..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence            445566666666666666666666666655433245555555666666666666666666665532   12 22222222


Q ss_pred             ---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037164          139 ---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRN  209 (250)
Q Consensus       139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  209 (250)
                               .++|...+++..... |....  .          +..       -...|..+-..+.+.|++++|...|++
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~--~----------~~~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~  142 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNAT--I----------EKL-------YAIYYLKEGQKFQQAGNIEKAEENYKH  142 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHH--H----------HHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHH--H----------HHH-------HHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence                     334444433333211 11110  0          000       002345555566667777777777776


Q ss_pred             HHhCCCCCC---CcchHHHHHHHHhcCCh---------------------------hHHHHHHHHHHh
Q 037164          210 WTSKNLPYD---FGLPSSLIDAHCKNGLL---------------------------EKAQSLINHAET  247 (250)
Q Consensus       210 m~~~~~~~~---~~~~~~li~~~~~~g~~---------------------------~~a~~~~~~m~~  247 (250)
                      ....  .|+   ...|..+-..|...|+.                           ++|...+++..+
T Consensus       143 al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          143 ATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6532  232   45566666666666665                           888888888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.63  E-value=1.1e-05  Score=67.13  Aligned_cols=228  Identities=11%  Similarity=0.018  Sum_probs=143.0

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhc---cc------cccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLR---QC------LFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMI   69 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~---~~------~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~   69 (250)
                      .+|...|++++|...|++.....+   ++      .+|.             .++|.+.|++..+.+ +-+...+..+..
T Consensus       102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~  180 (472)
T 4g1t_A          102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAI  180 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            367788999999999987755411   11      1121             679999999998863 334455555544


Q ss_pred             H---HhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCCccHHHHHHH---
Q 037164           70 L---NYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMVLDFNLLAVL---  138 (250)
Q Consensus        70 ~---~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---  138 (250)
                      +   +...++.++|++.++...+.  .| +..++..+...+..    .+++++|.+++++....  .+.+...+..+   
T Consensus       181 ~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~  256 (472)
T 4g1t_A          181 ASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKF  256 (472)
T ss_dssp             HHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHH
Confidence            4   45567888899988876654  34 44556655555554    46788999999987653  22233334333   


Q ss_pred             ------HHHHHHHHHHHHhhhhccCCchhhhc--------------------------chhHHHHHHHHHhcc---CCCC
Q 037164          139 ------LYMAMTMLKKSEGLIATKRNSSNAFE--------------------------LKDQLYRIWKHYGQT---RKVF  183 (250)
Q Consensus       139 ------~~~a~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~---~~~~  183 (250)
                            .++|...+.+..... |+...  ++.                          .....+.+...++..   .+..
T Consensus       257 ~~~~~~~~~A~~~~~~al~~~-p~~~~--~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  333 (472)
T 4g1t_A          257 YRRKDEPDKAIELLKKALEYI-PNNAY--LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL  333 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHH--HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHcCchHHHHHHHHHHHHhC-CChHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence                  888888888876433 23221  222                          112233444444332   3345


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--chHHHHH-HHHhcCChhHHHHHHHHHHh
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG--LPSSLID-AHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ...+..+-..|...|++++|+..|++.......+...  .+..+.. .+...|++++|...+++.++
T Consensus       334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5788889999999999999999999988654433221  1222222 24567999999999988765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.59  E-value=5.2e-07  Score=69.52  Aligned_cols=197  Identities=8%  Similarity=-0.063  Sum_probs=123.9

Q ss_pred             hhhccChhHHHHHHHHhhhhh-----cc----ccccc-----------hhHHHHHHHHHHHC------C-CCccHHHHHH
Q 037164           14 IFEVHGVEQAEIYFDNISKLL-----RQ----CLFFG-----------VGKAEMVVQEMKDM------G-FARRTIYCYI   66 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~-----~~----~~~y~-----------~~~A~~~~~~m~~~------~-~~p~~~~y~~   66 (250)
                      ....|++++|..+|++.....     ++    ..++.           .++|...|++..+.      + -+....+|+.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            345678888888887765531     11    11222           78888888887654      2 2344678999


Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhc------CC-CCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-----CCCCc-cHH
Q 037164           67 MMILNYLTGNREKIDALMLEMEEK------SI-NGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-----PQMVL-DFN  133 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~------gi-~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-----~g~~~-~~~  133 (250)
                      +..+|...|++++|.+++.+..+.      .- +....+|..+...|...|++++|.+.+++....     .+..| ...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999999999987654      11 224577888899999999999999999987542     01123 234


Q ss_pred             HHHHH---------HHHHHHHHHHHHhhhhc--------cCCchhhhc-------------chhHHHHHHHHHhccCC--
Q 037164          134 LLAVL---------LYMAMTMLKKSEGLIAT--------KRNSSNAFE-------------LKDQLYRIWKHYGQTRK--  181 (250)
Q Consensus       134 ~~~~l---------~~~a~~~~~~~~~~~~~--------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--  181 (250)
                      ++..+         .++|...+++.......        ... . .+.             .......+...++....  
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK-P-IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS  248 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCC-C-HHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHH-H-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence            44444         78888888887743211        111 0 111             12222333333333332  


Q ss_pred             -CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          182 -VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       182 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                       .....+..+...|.+.|++++|..+|++...
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             2236788888999999999999999998763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=1.4e-05  Score=59.58  Aligned_cols=177  Identities=10%  Similarity=-0.063  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC----ChhHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS----DIHGMDKI  118 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~----~~~~a~~~  118 (250)
                      .+|.+.|++..+.|   ++..+..|-..|...+++++|.++|+...+.|   +...+..|-..|.. +    ++++|.++
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            46788889988875   77889999999999999999999999987765   56777777778877 6    89999999


Q ss_pred             HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC--CC---hhhHHHHHH
Q 037164          119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF---NKGYMTMMG  192 (250)
Q Consensus       119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~  192 (250)
                      |++.... |.........           .+- .+..          ..++..++.+.++....  ++   ...+..|-.
T Consensus        76 ~~~A~~~-g~~~a~~~Lg-----------~~y~~g~g----------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~  133 (212)
T 3rjv_A           76 AEKAVEA-GSKSGEIVLA-----------RVLVNRQA----------GATDVAHAITLLQDAARDSESDAAVDAQMLLGL  133 (212)
T ss_dssp             HHHHHHT-TCHHHHHHHH-----------HHHTCGGG----------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCHHHHHHHH-----------HHHHcCCC----------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence            9998765 5432222211           111 1110          13345556666655544  21   567777778


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 037164          193 LLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN-G-----LLEKAQSLINHAETKKG  250 (250)
Q Consensus       193 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~  250 (250)
                      .|..    .++.++|..+|++....  +.+...+..|-..|... |     ++++|...|++..+.|.
T Consensus       134 ~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          134 IYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8887    78999999999998865  34556778888888764 3     89999999999988763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.56  E-value=3.4e-06  Score=68.60  Aligned_cols=61  Identities=8%  Similarity=0.019  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..+..+-..+...++   +.+|...+++..  ..+.....+..+-..|...|++++|...|++..+
T Consensus       301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          301 ELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345555566677777   777777776521  1122234567788889999999999999998765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.54  E-value=2.1e-06  Score=67.62  Aligned_cols=181  Identities=12%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           45 AEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        45 A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      |...|++..+.+ .++..+...+..++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555555443 45566667888889999999999999997655432 1255677788899999999999999999997


Q ss_pred             hCCCCCcc-----HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHHHHHHHHh
Q 037164          124 SNPQMVLD-----FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMTMMGLLLK  196 (250)
Q Consensus       124 ~~~g~~~~-----~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~  196 (250)
                      +   ..||     -.+...+ -++   +-.+..+.             +....++..+++...  |+..+-..++.++.+
T Consensus       164 ~---~~~d~~~~~d~~l~~L-aea---~v~l~~g~-------------~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~  223 (310)
T 3mv2_B          164 N---AIEDTVSGDNEMILNL-AES---YIKFATNK-------------ETATSNFYYYEELSQTFPTWKTQLGLLNLHLQ  223 (310)
T ss_dssp             H---HSCHHHHHHHHHHHHH-HHH---HHHHHHTC-------------STTTHHHHHHHHHHTTSCSHHHHHHHHHHHHH
T ss_pred             h---cCccccccchHHHHHH-HHH---HHHHHhCC-------------ccHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            5   3452     2222111 000   00111110             122233444444322  332233444558999


Q ss_pred             cCCHHHHHHHHHHHHhC-----C----CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          197 LDDVKGAEKTLRNWTSK-----N----LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~-----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .|++++|++.++.+...     +    -+-|+.+...+|......|+  +|.+++.++.+.
T Consensus       224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            99999999999977642     1    14466666455555555676  888998888753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.53  E-value=1.6e-06  Score=62.35  Aligned_cols=123  Identities=14%  Similarity=0.003  Sum_probs=89.9

Q ss_pred             chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcch
Q 037164           96 QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELK  166 (250)
Q Consensus        96 ~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
                      ...|..+...+...|++++|.+.++++...  .+.+...+..+         .++|...+++...               
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------------   70 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---------------   70 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------
Confidence            346777888999999999999999988653  22233333322         3333333333221               


Q ss_pred             hHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          167 DQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                                  ..+.+...+..+...+...|++++|...+++.... .+.+...+..+...|...|++++|..+++++.
T Consensus        71 ------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A           71 ------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             ------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence                        12234567888889999999999999999998854 34567888999999999999999999999887


Q ss_pred             hc
Q 037164          247 TK  248 (250)
Q Consensus       247 ~~  248 (250)
                      +.
T Consensus       138 ~~  139 (186)
T 3as5_A          138 GL  139 (186)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.49  E-value=5.6e-05  Score=56.74  Aligned_cols=180  Identities=8%  Similarity=-0.049  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhh-CCCCCccHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTES-NPQMVLDFNLL  135 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~~  135 (250)
                      ...+..+...+.+.|++++|...|+.+.+.  .|+    ...+..+..+|.+.|++++|...|++... .|+...-...+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            345556666777888888888888887764  232    24566677888888888888888888654 22221111111


Q ss_pred             HHH----HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CCh-hhH-----------------HHHH
Q 037164          136 AVL----LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFN-KGY-----------------MTMM  191 (250)
Q Consensus       136 ~~l----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-----------------~~li  191 (250)
                      ..+    ...+...+.....    ...   .+...++.+++...++....  |+. ..+                 ..+-
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a  154 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFG----VDR---SDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA  154 (225)
T ss_dssp             HHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhc----cch---hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111    0000000000000    000   11123334444443333221  221 111                 2445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          192 GLLLKLDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      ..|.+.|++++|...|+++.......  ....+..+..+|.+.|++++|...++.+...+
T Consensus       155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            67889999999999999988542211  12568889999999999999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.48  E-value=3.5e-06  Score=68.48  Aligned_cols=211  Identities=13%  Similarity=0.051  Sum_probs=113.4

Q ss_pred             hhccChhHHHHHHHHhhhhhccccc-------cc------------hhHHH---------HHHHHHHHCCCCcc-HH---
Q 037164           15 FEVHGVEQAEIYFDNISKLLRQCLF-------FG------------VGKAE---------MVVQEMKDMGFARR-TI---   62 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~~~~~~-------y~------------~~~A~---------~~~~~m~~~~~~p~-~~---   62 (250)
                      -+.+++++|.++++++.........       |.            ...+.         +.++.+....-+.+ ..   
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY  102 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence            6789999999999998776333211       11            22222         55555543211111 11   


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhcC-CCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCcc-H
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEKS-INGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLD-F  132 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g-i~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~-~  132 (250)
                      .|...-..+...|++++|...|++..+.- -.++    ..+|..+-..|...|+++.|...+++....    .+..+. .
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            12223344678999999999999876531 1122    357788889999999999999999886432    011111 2


Q ss_pred             HHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 037164          133 NLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGA  203 (250)
Q Consensus       133 ~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  203 (250)
                      .++..+         +++|.+.+.+............                     ....+++.+-..|...|++++|
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---------------------~~~~~~~~lg~~y~~~~~~~~A  241 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR---------------------FIAISLLNIANSYDRSGDDQMA  241 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH---------------------HHHHHHHHHHHHHHHCCCHHHH
Confidence            233333         6667666666553221111100                     0113344444555555555555


Q ss_pred             HHHHHHHHhC----CCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          204 EKTLRNWTSK----NLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       204 ~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      ...+++....    +.+....++..+...|.+.|++++|...+++..
T Consensus       242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555554420    122224444555555555555555555555544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.46  E-value=2.7e-05  Score=62.93  Aligned_cols=235  Identities=14%  Similarity=0.047  Sum_probs=151.8

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc------ccc-----------hhHHHHHHHHHHHC----CCC-ccHHHHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL------FFG-----------VGKAEMVVQEMKDM----GFA-RRTIYCYIMMIL   70 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~------~y~-----------~~~A~~~~~~m~~~----~~~-p~~~~y~~li~~   70 (250)
                      .+...|++++|..+++......|...      .+.           .++|...+++..+.    |.. ....+++.+-..
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            45568999999999998665533221      111           78888888876542    211 112346777788


Q ss_pred             HhhcCChhhHHHHHHHHHhc----CCC--CC-chhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCc--cHHHHHHH--
Q 037164           71 NYLTGNREKIDALMLEMEEK----SIN--GD-QFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVL--DFNLLAVL--  138 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~----gi~--p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~--~~~~~~~l--  138 (250)
                      +...|++++|...+++....    +-.  |. ..++..+-..+...|++++|...+++.... +...+  ...++..+  
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            99999999999999886542    222  32 345667778899999999999999986532 12222  12333333  


Q ss_pred             -------HHHHHHHHHHHHhhhh-ccCCc-hh---------hhcchhHHHHHHHHHhccCC--CC-----hhhHHHHHHH
Q 037164          139 -------LYMAMTMLKKSEGLIA-TKRNS-SN---------AFELKDQLYRIWKHYGQTRK--VF-----NKGYMTMMGL  193 (250)
Q Consensus       139 -------~~~a~~~~~~~~~~~~-~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~li~~  193 (250)
                             .++|...+++...... +.... ..         .+...++..++...++....  +.     ...+..+...
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~  262 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  262 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence                   7888888888763321 11110 00         01155666677666655433  11     1245677788


Q ss_pred             HHhcCCHHHHHHHHHHHHhC----CCCCCC-cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          194 LLKLDDVKGAEKTLRNWTSK----NLPYDF-GLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       194 ~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +...|+.++|...+++....    +.+++. .++..+-.++...|+.++|...+++..+
T Consensus       263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999987532    222222 2566677888899999999999988764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.46  E-value=4.1e-05  Score=58.70  Aligned_cols=178  Identities=6%  Similarity=-0.135  Sum_probs=100.3

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFN  133 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~  133 (250)
                      .+...+-.+-..+.+.|++++|...|+...+..  |+    ...+..+-.+|.+.|++++|...|++.... |+.+....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            345566666677777788888888888776642  32    455666677777788888888888776542 11111111


Q ss_pred             HHHHH-----------------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 037164          134 LLAVL-----------------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLK  196 (250)
Q Consensus       134 ~~~~l-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  196 (250)
                      .+..+                 .++|...|++..... |+...  .......+..+...       ....+..+-..|.+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~--~~~a~~~~~~~~~~-------~~~~~~~la~~~~~  160 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHEL--VDDATQKIRELRAK-------LARKQYEAARLYER  160 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTT--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchh--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            11111                 222333333322211 11110  00000000000000       01113556788999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhc----------CChhHHHHHHHHHHhc
Q 037164          197 LDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKN----------GLLEKAQSLINHAETK  248 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  248 (250)
                      .|++++|...|++........  ....+..+..+|...          |++++|...++++.+.
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            999999999999988543211  234677788888866          8899999999988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.45  E-value=4.3e-06  Score=65.83  Aligned_cols=205  Identities=11%  Similarity=-0.037  Sum_probs=134.1

Q ss_pred             hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCCh
Q 037164           42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDI  112 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~  112 (250)
                      .++|..+|++..+.+ +.+    ...|..+...|...|++++|.+++++..+.    +-.| ...++..+...|...|++
T Consensus        21 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   99 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF   99 (338)
T ss_dssp             HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCH
Confidence            789999999998863 223    467889999999999999999999886432    2222 256788888999999999


Q ss_pred             hHHHHHHHHHhhCCCCCcc----HHHHHHH-----------------------------HHHHHHHHHHHHhhhhccCCc
Q 037164          113 HGMDKIINMTESNPQMVLD----FNLLAVL-----------------------------LYMAMTMLKKSEGLIATKRNS  159 (250)
Q Consensus       113 ~~a~~~~~~m~~~~g~~~~----~~~~~~l-----------------------------~~~a~~~~~~~~~~~~~~~~~  159 (250)
                      ++|.+.+++......-.++    ..++..+                             +++|.+.+++...........
T Consensus       100 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~  179 (338)
T 3ro2_A          100 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR  179 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999886432011111    1122222                             134555555543211110000


Q ss_pred             h---hhhc-------chhHHHHHHHHHhccC-------C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-
Q 037164          160 S---NAFE-------LKDQLYRIWKHYGQTR-------K--VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYD-  218 (250)
Q Consensus       160 ~---~~~~-------~~~~~~~~~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~-  218 (250)
                      .   ..+.       ..++.+++.+.++...       .  .....+..+...+...|++++|...+++...... ..+ 
T Consensus       180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (338)
T 3ro2_A          180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence            0   0111       4555555555554431       1  1124778888999999999999999998763211 111 


Q ss_pred             ---CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          219 ---FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       219 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                         ..++..+...|...|++++|...+++..+
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence               55778888999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.43  E-value=1.6e-05  Score=73.66  Aligned_cols=206  Identities=12%  Similarity=0.034  Sum_probs=140.8

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE   86 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~   86 (250)
                      ..+-..|.+++|..+|++....... ...+.    +++|.++.++.      -+..+|..+-.++...|++++|...|..
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            4566789999999999987543211 11121    77787777755      2468999999999999999999999964


Q ss_pred             HHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhc-
Q 037164           87 MEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFE-  164 (250)
Q Consensus        87 m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~-  164 (250)
                        .    -|...|..++.+|.+.|++++|.+.+...++. .-.|...+.-.. +.+. +-+.+++.-...... . .|. 
T Consensus      1131 --A----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~~e~~Idt~LafaYAKl-~rleele~fI~~~n~-a-d~~~ 1200 (1630)
T 1xi4_A         1131 --A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKT-NRLAELEEFINGPNN-A-HIQQ 1200 (1630)
T ss_pred             --c----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cccccccHHHHHHHHhh-cCHHHHHHHHhCCCH-H-HHHH
Confidence              2    47888999999999999999999999987664 312211121111 1111 111112211111111 1 111 


Q ss_pred             ------chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164          165 ------LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA  238 (250)
Q Consensus       165 ------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  238 (250)
                            ..+..+.+...+...     ..|..+...|++.|++++|.+.+++..      +..+|.-+-.+|...|++..|
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHH
Confidence                  666666666666653     478899999999999999999998763      568899999999999999999


Q ss_pred             HHHHHH
Q 037164          239 QSLINH  244 (250)
Q Consensus       239 ~~~~~~  244 (250)
                      ..+...
T Consensus      1270 ~~cgl~ 1275 (1630)
T 1xi4_A         1270 QMCGLH 1275 (1630)
T ss_pred             HHHHHh
Confidence            887644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.43  E-value=1.8e-06  Score=70.72  Aligned_cols=205  Identities=10%  Similarity=-0.036  Sum_probs=135.0

Q ss_pred             hhHHHHHHHHHHHCCCCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhc----CC-CCCchhHhhhHHHHHhcCCh
Q 037164           42 VGKAEMVVQEMKDMGFARRT----IYCYIMMILNYLTGNREKIDALMLEMEEK----SI-NGDQFTLGIRPSAYAAASDI  112 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi-~p~~~ty~~li~~~~~~~~~  112 (250)
                      .++|...|++..+.+ +.+.    .+|..+..+|...|++++|.+.+++..+.    +- .....+|..+-..|...|++
T Consensus        64 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  142 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF  142 (411)
T ss_dssp             HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence            899999999998863 2232    57889999999999999999999986543    11 22446788888999999999


Q ss_pred             hHHHHHHHHHhhC---CCCCcc-HHHHHHH--------------------------HHHHHHHHHHHHhhhhc-cC-Cc-
Q 037164          113 HGMDKIINMTESN---PQMVLD-FNLLAVL--------------------------LYMAMTMLKKSEGLIAT-KR-NS-  159 (250)
Q Consensus       113 ~~a~~~~~~m~~~---~g~~~~-~~~~~~l--------------------------~~~a~~~~~~~~~~~~~-~~-~~-  159 (250)
                      ++|.+.+++....   .+-.|. ..++..+                          +++|.+.+.+....... .. .. 
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~  222 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ  222 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999886432   011111 2222222                          13455555554321110 00 00 


Q ss_pred             hhhhc-------chhHHHHHHHHHhccCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CC
Q 037164          160 SNAFE-------LKDQLYRIWKHYGQTRK-----VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-----YD  218 (250)
Q Consensus       160 ~~~~~-------~~~~~~~~~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~  218 (250)
                      ...+.       ..++.+++.+.++....     .+    ...+..+...|...|++++|...+++.......     ..
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  302 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE  302 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            00111       55555555555544321     11    237788889999999999999999887642111     12


Q ss_pred             CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          219 FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       219 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..++..+...|...|++++|..++++..+
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46788888999999999999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.42  E-value=5.5e-06  Score=71.17  Aligned_cols=146  Identities=6%  Similarity=-0.063  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      ++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.+++..+.. +.+...|..+-.+|...|++++|.+.+++.
T Consensus         6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   83 (568)
T 2vsy_A            6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQA   83 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45666666665542 3456788888888888999999999998776642 224677888888888999999999888887


Q ss_pred             hhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhc--
Q 037164          123 ESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKL--  197 (250)
Q Consensus       123 ~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~--  197 (250)
                      ...  -+.+...+..+   +.                  .|...++.+++.+.++..   .+.+...+..+...+...  
T Consensus        84 l~~--~p~~~~~~~~l---a~------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  140 (568)
T 2vsy_A           84 SDA--APEHPGIALWL---GH------------------ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD  140 (568)
T ss_dssp             HHH--CTTCHHHHHHH---HH------------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             Hhc--CCCCHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence            543  11122222111   00                  111222222222222221   122345666667777777  


Q ss_pred             -CCHHHHHHHHHHHHhC
Q 037164          198 -DDVKGAEKTLRNWTSK  213 (250)
Q Consensus       198 -g~~~~A~~~~~~m~~~  213 (250)
                       |+.++|...+++....
T Consensus       141 ~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          141 WRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhc
Confidence             7777777777776643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.42  E-value=1.1e-05  Score=59.78  Aligned_cols=127  Identities=10%  Similarity=-0.027  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM  141 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~  141 (250)
                      ..+..+-..+...|++++|.+.|++.    +.|+...|..+..+|.+.|++++|.+.+++.... .  |           
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~-----------   68 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D--K-----------   68 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--T-----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--c-----------
Confidence            44566677888899999999999855    4678888999999999999999999998877543 0  1           


Q ss_pred             HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--
Q 037164          142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF--  219 (250)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--  219 (250)
                                                              .+...|..+-.+|.+.|++++|...|++..... +.+.  
T Consensus        69 ----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~  107 (213)
T 1hh8_A           69 ----------------------------------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLI  107 (213)
T ss_dssp             ----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEE
T ss_pred             ----------------------------------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHH
Confidence                                                    112345566667777777777777777766432 1122  


Q ss_pred             --------------cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          220 --------------GLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       220 --------------~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                                    ..+..+..+|.+.|++++|...|++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A          108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                          5566777777777777777777777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.41  E-value=2.1e-05  Score=72.94  Aligned_cols=203  Identities=9%  Similarity=0.017  Sum_probs=136.6

Q ss_pred             hccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164           16 EVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM   84 (250)
Q Consensus        16 k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~   84 (250)
                      ..+++++|.++.+++..    +.+|.           +++|.+-|.+.      -|...|..++.+|.+.|++++|.+++
T Consensus      1088 ~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             HHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55667777766665532    23333           88898888663      57789999999999999999999999


Q ss_pred             HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------HHHHHHHHHHHHhhhhccCC
Q 037164           85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRN  158 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~  158 (250)
                      ..-++..  +++...+.+..+|++.+++++...++    .. .-.++.......      +++|..+|..........  
T Consensus      1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~-~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA-- 1228 (1630)
T 1xi4_A         1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFI----NG-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA-- 1228 (1630)
T ss_pred             HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHH--
Confidence            9655543  55544556999999999988655553    22 111222222222      888888888864222100  


Q ss_pred             chhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH
Q 037164          159 SSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  238 (250)
                       . +|.+.++++.+.+..+..  .+..+|..+-.+|...|++..|.......     ..++..+..++..|.+.|.+++|
T Consensus      1229 -~-tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A         1229 -S-TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred             -H-HHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHH
Confidence             1 444777888888888766  45577777777777778777777766432     23455566777788888888888


Q ss_pred             HHHHHHHH
Q 037164          239 QSLINHAE  246 (250)
Q Consensus       239 ~~~~~~m~  246 (250)
                      ..+++..+
T Consensus      1300 I~LlE~aL 1307 (1630)
T 1xi4_A         1300 ITMLEAAL 1307 (1630)
T ss_pred             HHHHHHHh
Confidence            88776653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.41  E-value=3.6e-06  Score=60.73  Aligned_cols=165  Identities=7%  Similarity=-0.031  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYM  141 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~  141 (250)
                      ..+..+...+.+.|++++|...+++..+. -+.+...+..+-..+.+.|++++|...+++....   .|+....... . 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~-~-   80 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLI-A-   80 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHH-H-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHH-H-
Confidence            34556677888999999999999976543 1225677888899999999999999999987543   2233222111 0 


Q ss_pred             HHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc
Q 037164          142 AMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFG  220 (250)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~  220 (250)
                      .....   .. .  ...        +.. ..++..-...+.+...+..+-..+...|++++|...|++.......+ +..
T Consensus        81 ~~~~~---~~-~--~~~--------~a~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  145 (176)
T 2r5s_A           81 KLELH---QQ-A--AES--------PEL-KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE  145 (176)
T ss_dssp             HHHHH---HH-H--TSC--------HHH-HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred             HHHHH---hh-c--ccc--------hHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence            00000   00 0  000        011 11111112233445788889999999999999999999988654432 456


Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+..+...|...|+.++|...+++.+.
T Consensus       146 a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          146 VKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            899999999999999999999998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.40  E-value=1.1e-05  Score=65.94  Aligned_cols=178  Identities=7%  Similarity=-0.111  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|+..|++..+.+ +-+..+|+.+-.++.+.|+ +++|+..|++..+.+- -+...|+.+-.++.+.|++++|...|+
T Consensus       113 ~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~  190 (382)
T 2h6f_A          113 SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIA  190 (382)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             hHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            688889999888763 4467888888888999996 9999999998777522 256788888888999999999999999


Q ss_pred             HHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHh-
Q 037164          121 MTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLK-  196 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~-  196 (250)
                      ++...  -+-+...|..+   +.                  ++...++.+++.+.++..   .+.+...|+.+-..+.+ 
T Consensus       191 kal~l--dP~~~~a~~~l---g~------------------~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          191 DILNQ--DAKNYHAWQHR---QW------------------VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HHHHH--CTTCHHHHHHH---HH------------------HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHh--CccCHHHHHHH---HH------------------HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            87653  12233333222   00                  111112222222333222   22445788888888888 


Q ss_pred             cCCHHHH-----HHHHHHHHhCCCCCCCcchHHHHHHHHhcC--ChhHHHHHHHHH
Q 037164          197 LDDVKGA-----EKTLRNWTSKNLPYDFGLPSSLIDAHCKNG--LLEKAQSLINHA  245 (250)
Q Consensus       197 ~g~~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m  245 (250)
                      .|..++|     ...|++.... .+-+...|+.+...|...|  ++++|...+.++
T Consensus       248 ~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          248 TGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            6665777     4778877743 2335678888888899888  689999888776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.38  E-value=2.4e-05  Score=69.18  Aligned_cols=150  Identities=9%  Similarity=0.012  Sum_probs=90.4

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI   92 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi   92 (250)
                      +|.+.|++++|.+.|++..+..                       +-+..+|+.|-.+|.+.|++++|.+.|++..+.  
T Consensus        18 ~~~~~G~~~eAi~~~~kAl~l~-----------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--   72 (723)
T 4gyw_A           18 IKREQGNIEEAVRLYRKALEVF-----------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--   72 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-----------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            4555666666666666655441                       234567777777777777777777777766553  


Q ss_pred             CC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHH
Q 037164           93 NG-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLY  170 (250)
Q Consensus        93 ~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
                      .| +...|+.+-.+|.+.|++++|.+.|++..+.   .|+ ...+..+        .            . .|...++.+
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~L--------g------------~-~~~~~g~~~  128 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNL--------A------------S-IHKDSGNIP  128 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH--------H------------H-HHHHTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH--------H------------H-HHHHcCCHH
Confidence            34 3466777777777777777777777776532   122 2222222        0            0 111223333


Q ss_pred             HHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          171 RIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       171 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      ++.+.+++.   .+.+...|..+...|...|++++|.+.+++..
T Consensus       129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A          129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence            333333222   11234678888999999999999988888754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.37  E-value=5.3e-05  Score=56.72  Aligned_cols=110  Identities=9%  Similarity=-0.095  Sum_probs=83.3

Q ss_pred             hHhhhccChhHHHHHHHHhhhhh--ccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLL--RQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~--~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      ..+.+.|++++|.+.|+......  ++...+.           .++|...|++..+.+ +.+..+|..+-.+|...|+++
T Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~   93 (228)
T 4i17_A           15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQ   93 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHH
Confidence            35677899999999999877764  3333333           788888888888763 345678888888889999999


Q ss_pred             hHHHHHHHHHhcCCCCC-c-------hhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSINGD-Q-------FTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~-~-------~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +|.+.+++..+.  .|+ .       ..|..+-..+...|++++|.+.|++...
T Consensus        94 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           94 EYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            999999887664  233 3       3467777888888899999999988864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.36  E-value=7.6e-06  Score=68.84  Aligned_cols=182  Identities=8%  Similarity=0.015  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHhhhhhcc-ccccc-----------h-hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHH
Q 037164           20 VEQAEIYFDNISKLLRQ-CLFFG-----------V-GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLE   86 (250)
Q Consensus        20 ~~~a~~~f~~~~~~~~~-~~~y~-----------~-~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~   86 (250)
                      ++++.+.++......++ ...+.           . ++|++.|++..+.. +.+..+|..+-.+|.+.|++++|.+.|+.
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55566666655544332 22222           7 99999999998863 44588999999999999999999999998


Q ss_pred             HHhcCCCCCchhHhhhHHHHHhc---------CChhHHHHHHHHHhhCCCCCccHHHHHHH-----------------HH
Q 037164           87 MEEKSINGDQFTLGIRPSAYAAA---------SDIHGMDKIINMTESNPQMVLDFNLLAVL-----------------LY  140 (250)
Q Consensus        87 m~~~gi~p~~~ty~~li~~~~~~---------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-----------------~~  140 (250)
                      ..+.  .|+...|..+-..|...         |++++|.+.+++....  .+.+...|..+                 ++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            7764  57888888999999999         9999999999998653  12233333333                 45


Q ss_pred             HHHHHHHHHHhhhhc---cCCchhhhc-------chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037164          141 MAMTMLKKSEGLIAT---KRNSSNAFE-------LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTL  207 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~  207 (250)
                      +|.+.|++..... |   ....  .|.       ..++.+++.+.++...   +.+...+..+-..+...|+.++|...+
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPD--LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcccCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6667777666432 3   2221  332       6677777777776643   234467888889999999999998765


Q ss_pred             HH
Q 037164          208 RN  209 (250)
Q Consensus       208 ~~  209 (250)
                      ++
T Consensus       316 ~~  317 (474)
T 4abn_A          316 GK  317 (474)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.35  E-value=1.7e-05  Score=62.09  Aligned_cols=169  Identities=8%  Similarity=-0.028  Sum_probs=118.1

Q ss_pred             CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164           57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL  135 (250)
Q Consensus        57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  135 (250)
                      ++.+...+..+-..+.+.|++++|...+++..+.  .| +...+..+...+.+.|++++|...+++....   .|+....
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~  187 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ  187 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence            3556677888888899999999999999987764  34 5578888899999999999999999987542   3443321


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                      ...  .+..+...    .. ..         ..+ ..++..-...+.+...+..+-..+...|+.++|...|.+......
T Consensus       188 ~~~--~~~~l~~~----~~-~~---------~a~-~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          188 GLV--AQIELLXQ----AA-DT---------PEI-QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL  250 (287)
T ss_dssp             HHH--HHHHHHHH----HT-SC---------HHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHH--HHHHHHhh----cc-cC---------ccH-HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence            111  00101000    00 00         011 111111122334557788899999999999999999999986533


Q ss_pred             C-CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          216 P-YDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       216 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      . .+...+..|...|...|+.++|...+++.+.
T Consensus       251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            2 2367899999999999999999999988664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.33  E-value=1.8e-05  Score=61.99  Aligned_cols=159  Identities=9%  Similarity=-0.074  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHCC-CCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-C----chhHhhhHHHHHhcCC
Q 037164           42 VGKAEMVVQEMKDMG-FARRT----IYCYIMMILNYLTGNREKIDALMLEMEEKSING-D----QFTLGIRPSAYAAASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~-~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~----~~ty~~li~~~~~~~~  111 (250)
                      .++|..++++..+.. ..|+.    ..+..+...|...|++++|...++...+..... +    ..+|+.+-..|...|+
T Consensus        91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  170 (293)
T 3u3w_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY  170 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC
Confidence            678888888876642 22332    234456677788889999999999887743332 2    2268888889999999


Q ss_pred             hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164          112 IHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM  191 (250)
Q Consensus       112 ~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  191 (250)
                      +++|...|++....                    ++..     +...                      .....+|..+.
T Consensus       171 ~~~A~~~~~~al~~--------------------~~~~-----~~~~----------------------~~~~~~~~nlg  203 (293)
T 3u3w_A          171 LKKGIDLFEQILKQ--------------------LEAL-----HDNE----------------------EFDVKVRYNHA  203 (293)
T ss_dssp             HHHHHHHHHHHHHH--------------------HHHS-----SCCH----------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------------------HHhc-----ccch----------------------hHHHHHHHHHH
Confidence            99999998887542                    0000     0010                      01134678888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCCCC-CcchHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 037164          192 GLLLKLDDVKGAEKTLRNWTSK----NLPYD-FGLPSSLIDAHCKNGL-LEKAQSLINHAET  247 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~  247 (250)
                      ..|.+.|++++|...+++....    +..+. ..+|..+-..|.+.|+ +++|...+++..+
T Consensus       204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            9999999999999999886532    22222 4578888889999995 5999999888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.30  E-value=1.8e-05  Score=62.47  Aligned_cols=90  Identities=10%  Similarity=0.008  Sum_probs=52.1

Q ss_pred             ccChhHHHHHHHHhhhhhcccccc--c--hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFF--G--VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK--   90 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y--~--~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--   90 (250)
                      .|++++|.+++++..+..+.. .|  .  .++|...|++.               ...|...|++++|.+.|.+..+.  
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~   67 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS-FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHA   67 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC-SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc-ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            467778888887776653321 11  1  44454444443               44566677777777776654332  


Q ss_pred             --CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           91 --SING-DQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        91 --gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                        |-.+ -..+|+.+...|.+.|++++|...|++.
T Consensus        68 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  102 (307)
T 2ifu_A           68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA  102 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence              1100 1235666667777777777777777664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.30  E-value=2.2e-05  Score=63.73  Aligned_cols=205  Identities=10%  Similarity=-0.057  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc----CCCCC-chhHhhhHHHHHhcCCh
Q 037164           42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK----SINGD-QFTLGIRPSAYAAASDI  112 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p~-~~ty~~li~~~~~~~~~  112 (250)
                      .++|...|++..+.+ +.+    ..+|..+...|...|++++|...+++....    +-.|. ..+|..+...|...|++
T Consensus        25 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  103 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF  103 (406)
T ss_dssp             HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence            789999999998863 223    367888899999999999999999986442    22222 45678888999999999


Q ss_pred             hHHHHHHHHHhhCCCCCcc----HHHHHHH-----------------------------HHHHHHHHHHHHhhhhccCCc
Q 037164          113 HGMDKIINMTESNPQMVLD----FNLLAVL-----------------------------LYMAMTMLKKSEGLIATKRNS  159 (250)
Q Consensus       113 ~~a~~~~~~m~~~~g~~~~----~~~~~~l-----------------------------~~~a~~~~~~~~~~~~~~~~~  159 (250)
                      ++|...+++......-.++    ..++..+                             +++|.+.+.+...........
T Consensus       104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  183 (406)
T 3sf4_A          104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR  183 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            9999999876532000011    1122222                             133444444433211111000


Q ss_pred             h---hhhc-------chhHHHHHHHHHhccCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-
Q 037164          160 S---NAFE-------LKDQLYRIWKHYGQTRK-----VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF-  219 (250)
Q Consensus       160 ~---~~~~-------~~~~~~~~~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-  219 (250)
                      .   ..+.       ..++.+++.+.++....     ++    ...+..+...|...|++++|...+++.......... 
T Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            0   0111       44444444444433211     11    135666667777777777777777776643222111 


Q ss_pred             ----cchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          220 ----GLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       220 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                          .++..+...|...|++++|...+++..+
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                1455666677777777777777777654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.29  E-value=2.2e-05  Score=61.48  Aligned_cols=62  Identities=6%  Similarity=-0.077  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG------LPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .+++.+...+.+.|++++|...|++...........      .|..+..+|...|++++|...+++..
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566666677777777777777666433222111      34555556666677777766666543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.24  E-value=0.00014  Score=61.85  Aligned_cols=164  Identities=7%  Similarity=-0.006  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCc--hhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQ--FTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~--~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +|..+|++..+.-.+.+...|..+...+.+.|++++|..+|+...+  +.|+.  ..|..+...+.+.|++++|.++|++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            7899999988632345688999999999999999999999999887  45654  4799999999999999999999999


Q ss_pred             HhhCCCCCccHHHHHHH--------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhccC---C--
Q 037164          122 TESNPQMVLDFNLLAVL--------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQTR---K--  181 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l--------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~--  181 (250)
                      ....+...+........        .++|..+|++..... |+...  .+.       ..++.+++...++...   +  
T Consensus       382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~--~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH--HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH--HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            87652322222221111        678899998887543 44331  332       5666777766665542   2  


Q ss_pred             CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          182 VF--NKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       182 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      |.  ...|...+....+.|+.+.+..+++++..
T Consensus       459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            21  24788888888999999999999998874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.16  E-value=5.9e-05  Score=53.06  Aligned_cols=130  Identities=13%  Similarity=0.003  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY  140 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~  140 (250)
                      ...+..+...+...|++++|...|+...+.. +.+..+|..+..++...|++++|.+.+++....  . |          
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~-~----------   78 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--D-K----------   78 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-T----------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C-c----------
Confidence            4567778888899999999999999877642 335778888888999999999999988877543  0 1          


Q ss_pred             HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                                                               .+...|..+...+...|++++|...|++..... +.+..
T Consensus        79 -----------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~  116 (166)
T 1a17_A           79 -----------------------------------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKD  116 (166)
T ss_dssp             -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred             -----------------------------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH
Confidence                                                     112335556666777777777777777766432 22333


Q ss_pred             chH--HHHHHHHhcCChhHHHHHHHHHH
Q 037164          221 LPS--SLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       221 ~~~--~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .+.  .+...+.+.|++++|...+.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A          117 AKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            342  23333666677777777776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.15  E-value=7.8e-05  Score=58.36  Aligned_cols=202  Identities=14%  Similarity=-0.046  Sum_probs=120.1

Q ss_pred             ChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHC----CCCcc-HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC
Q 037164           19 GVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDM----GFARR-TIYCYIMMILNYLTGNREKIDALMLEMEEKSIN   93 (250)
Q Consensus        19 ~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~----~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~   93 (250)
                      ++++|...|...-.......-  .++|...|++..+.    |-+++ ..+|+.+-.+|.+.|++++|...+++..+..-.
T Consensus        32 ~~~~A~~~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~  109 (292)
T 1qqe_A           32 KFEEAADLCVQAATIYRLRKE--LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH  109 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            588899988876432111111  56666666665442    32222 578999999999999999999999876543111


Q ss_pred             -CC----chhHhhhHHHHHhc-CChhHHHHHHHHHhhC-C--CCCcc-HHHHHHH---------HHHHHHHHHHHHhhhh
Q 037164           94 -GD----QFTLGIRPSAYAAA-SDIHGMDKIINMTESN-P--QMVLD-FNLLAVL---------LYMAMTMLKKSEGLIA  154 (250)
Q Consensus        94 -p~----~~ty~~li~~~~~~-~~~~~a~~~~~~m~~~-~--g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~~  154 (250)
                       .+    ..+|+.+-..|... |++++|...|++.... +  +-.+. ..++..+         +++|...|++......
T Consensus       110 ~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence             11    35788888999996 9999999999987542 0  11100 1222222         4444444444332211


Q ss_pred             ccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---c---chHHHHH
Q 037164          155 TKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDF---G---LPSSLID  227 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~---~~~~li~  227 (250)
                       .....                    ... ...|..+..++...|++++|...|++...  +.|+.   .   .+..++.
T Consensus       190 -~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~  246 (292)
T 1qqe_A          190 -GNRLS--------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLID  246 (292)
T ss_dssp             -SCTTT--------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHH
T ss_pred             -cCCcc--------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHH
Confidence             11000                    000 12466777888899999999999988763  23321   1   2344556


Q ss_pred             HHH--hcCChhHHHHHHHHH
Q 037164          228 AHC--KNGLLEKAQSLINHA  245 (250)
Q Consensus       228 ~~~--~~g~~~~a~~~~~~m  245 (250)
                      +|.  ..+++++|...|+++
T Consensus       247 ~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          247 AVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHcCCHHHHHHHHHHhccC
Confidence            664  346677787777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.14  E-value=5.7e-05  Score=50.11  Aligned_cols=114  Identities=11%  Similarity=-0.002  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY  140 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~  140 (250)
                      ..+|..+...+.+.|++++|.+++++..+.. +.+..++..+...+.+.|++++|..+++++... .  |          
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~--~----------   74 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--P----------   74 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--T----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C--C----------
Confidence            5778888889999999999999999887752 345678888889999999999999998887542 0  0          


Q ss_pred             HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                                                               .+...+..+...+...|++++|...++++.... +.+..
T Consensus        75 -----------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  112 (125)
T 1na0_A           75 -----------------------------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAE  112 (125)
T ss_dssp             -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             -----------------------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHH
Confidence                                                     123346677788888899999999998887542 22334


Q ss_pred             chHHHHHHHH
Q 037164          221 LPSSLIDAHC  230 (250)
Q Consensus       221 ~~~~li~~~~  230 (250)
                      .+..+-..+.
T Consensus       113 ~~~~l~~~~~  122 (125)
T 1na0_A          113 AKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.14  E-value=5.2e-05  Score=59.13  Aligned_cols=78  Identities=8%  Similarity=-0.121  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.++...+.  .| +...|..+-.+|...|++++|.+.|+
T Consensus        20 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   96 (281)
T 2c2l_A           20 YPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (281)
T ss_dssp             HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556666666665542 234555666666666666666666666654432  23 33455555566666666666666665


Q ss_pred             HH
Q 037164          121 MT  122 (250)
Q Consensus       121 ~m  122 (250)
                      +.
T Consensus        97 ~a   98 (281)
T 2c2l_A           97 RA   98 (281)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.12  E-value=4.7e-05  Score=58.36  Aligned_cols=164  Identities=8%  Similarity=-0.031  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CC-CchhHhhhHHHHHh--------
Q 037164           42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NG-DQFTLGIRPSAYAA--------  108 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p-~~~ty~~li~~~~~--------  108 (250)
                      .++|...|++..+.. +.+   ...+..+-.+|.+.|++++|...|+...+..- .| ....+..+-.++.+        
T Consensus        31 ~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~  109 (261)
T 3qky_A           31 YDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD  109 (261)
T ss_dssp             HHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred             HHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence            455555555554432 222   56777788888888888888888888776421 11 23456666777777        


Q ss_pred             cCChhHHHHHHHHHhhC-CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CC--
Q 037164          109 ASDIHGMDKIINMTESN-PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VF--  183 (250)
Q Consensus       109 ~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--  183 (250)
                      .|++++|...|++.... |+.......... +......+.+..-..   ..   .|...++..++...++....  |+  
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~-~~~~~~~~~~~~~~l---a~---~~~~~g~~~~A~~~~~~~l~~~p~~~  182 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDATQK-IRELRAKLARKQYEA---AR---LYERRELYEAAAVTYEAVFDAYPDTP  182 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHHHH-HHHHHHHHHHHHHHH---HH---HHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHHHH-HHHHHHHHHHHHHHH---HH---HHHHccCHHHHHHHHHHHHHHCCCCc
Confidence            88888888888887543 222111111111 111111111110000   00   23344444455444444311  22  


Q ss_pred             --hhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 037164          184 --NKGYMTMMGLLLKL----------DDVKGAEKTLRNWTSK  213 (250)
Q Consensus       184 --~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~  213 (250)
                        ...+..+..+|.+.          |++++|...|++....
T Consensus       183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence              24566666777765          8889999999998753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.12  E-value=5.6e-05  Score=59.13  Aligned_cols=158  Identities=8%  Similarity=-0.124  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHCCCC-cc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC---CCC--chhHhhhHHHHHhcCC
Q 037164           42 VGKAEMVVQEMKDMGFA-RR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSI---NGD--QFTLGIRPSAYAAASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~-p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi---~p~--~~ty~~li~~~~~~~~  111 (250)
                      .++|.+.+++..+..-. ++    ...+..+...+...|++++|.+.+....+...   .+.  ..+|+.+-..|...|+
T Consensus        91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~  170 (293)
T 2qfc_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY  170 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC
Confidence            77888888877664321 11    12344455667788899999998887664321   111  3478888888899999


Q ss_pred             hhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164          112 IHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM  191 (250)
Q Consensus       112 ~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  191 (250)
                      +++|...+++....                    ++     ..+... .                     ....+|+.+.
T Consensus       171 ~~~A~~~~~kal~~--------------------~~-----~~~~~~-~---------------------~~~~~~~nlg  203 (293)
T 2qfc_A          171 LKKGIDLFEQILKQ--------------------LE-----ALHDNE-E---------------------FDVKVRYNHA  203 (293)
T ss_dssp             HHHHHHHHHHHHHH--------------------HH-----HSCCCH-H---------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------------------HH-----hcCccc-c---------------------chHHHHHhHH
Confidence            99998888877532                    00     000110 0                     0124577788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC----CCC-CCcchHHHHHHHHhcCChhHH-HHHHHHHH
Q 037164          192 GLLLKLDDVKGAEKTLRNWTSKN----LPY-DFGLPSSLIDAHCKNGLLEKA-QSLINHAE  246 (250)
Q Consensus       192 ~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  246 (250)
                      ..|.+.|++++|...+++.....    ... -..+|..+-..|.+.|++++| ...+++..
T Consensus       204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            88889999999999988865321    111 145677788888889999998 77677654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.10  E-value=0.00027  Score=61.97  Aligned_cols=199  Identities=9%  Similarity=-0.037  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH-HHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID-ALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~-~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      .+..+|++.... ++-+...|-....-+.+.|+.++|. ++++.-... ++.+...|-..+...-+.|++++|.++|+.+
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345667777665 4556777888888788889999996 999987653 4556666777888888999999999999988


Q ss_pred             hhCC---------CCCcc------------HHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhc-------c
Q 037164          123 ESNP---------QMVLD------------FNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFE-------L  165 (250)
Q Consensus       123 ~~~~---------g~~~~------------~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~  165 (250)
                      ....         .. |+            ..+|...         ++.|..+|.+......+... . .|.       .
T Consensus       405 l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~-~-lyi~~A~lE~~  481 (679)
T 4e6h_A          405 IDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-D-IYLENAYIEYH  481 (679)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-H-HHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-H-HHHHHHHHHHH
Confidence            6530         11 21            1123222         77888999888754222222 1 333       2


Q ss_pred             h-hHHHHHHHHHhc---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHH
Q 037164          166 K-DQLYRIWKHYGQ---TRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQ  239 (250)
Q Consensus       166 ~-~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  239 (250)
                      . ++.+++.++++.   ..+.+...|...+......|+.+.|..+|+........+  ....|...++--.+.|+.+.+.
T Consensus       482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~  561 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR  561 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            1 223444444433   334455677788888888999999999999988543322  3467888998889999999999


Q ss_pred             HHHHHHHh
Q 037164          240 SLINHAET  247 (250)
Q Consensus       240 ~~~~~m~~  247 (250)
                      .+.+++.+
T Consensus       562 ~v~~R~~~  569 (679)
T 4e6h_A          562 TLEKRFFE  569 (679)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.08  E-value=0.0003  Score=58.72  Aligned_cols=181  Identities=7%  Similarity=-0.039  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc----CChhHHHHHHHHHhhCCCCCccHHHH
Q 037164           63 YCYIMMILNYLTG---NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA----SDIHGMDKIINMTESNPQMVLDFNLL  135 (250)
Q Consensus        63 ~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~----~~~~~a~~~~~~m~~~~g~~~~~~~~  135 (250)
                      .+..|-..|...|   +.++|.+.|+.-.+.|- ++...+..|-..|...    +++++|.++|++.. . |........
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-GYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-GSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-CCHHHHHHH
Confidence            5555666666666   66666666666555542 2333334444444433    56666666666655 2 554444443


Q ss_pred             HHH---------HHHHHHHHHHHHhhhhccCCc--hhhhc----chhHHHHHHHHHhccCCCChhhHHHHHHHHHh----
Q 037164          136 AVL---------LYMAMTMLKKSEGLIATKRNS--SNAFE----LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLK----  196 (250)
Q Consensus       136 ~~l---------~~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----  196 (250)
                      ..+         .++|.+.|++......+....  ...|.    ...+..++.+.++.....+...+..+-..|..    
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~  334 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLG  334 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCC
Confidence            332         456666666555222111100  00111    12266666666655552223444444444444    


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 037164          197 LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKAQSLINHAETKK  249 (250)
Q Consensus       197 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  249 (250)
                      ..+.++|..+|++....|   +......|-..|..    ..++++|...++...+.|
T Consensus       335 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          335 KVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             SCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            236777777777766544   24455555555554    346777777777776665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.06  E-value=0.00031  Score=51.96  Aligned_cols=176  Identities=10%  Similarity=-0.070  Sum_probs=102.7

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcc-ccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS   91 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g   91 (250)
                      .+.+.|++++|...|+......|+ +..|.        ..-...........++.+-.+|.+.|++++|...|++..+..
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYY--------WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHH--------HHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHH--------HhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            455678888888888877665332 11211        100001111122334558889999999999999999887752


Q ss_pred             CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHH
Q 037164           92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYR  171 (250)
Q Consensus        92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (250)
                       +-+...|..+-.+|...|++++|.+.|++....  -+-+...+..+   +.-.+..                .......
T Consensus        85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l---g~~~~~~----------------~~~~~~~  142 (208)
T 3urz_A           85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFL---GNYYYLT----------------AEQEKKK  142 (208)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH---HHHHHHH----------------HHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHH---HHHHHHH----------------hHHHHHH
Confidence             236688899999999999999999999998653  12223333322   0000000                0011111


Q ss_pred             HHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          172 IWKHYGQTRKVFN--KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       172 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                      +...++....++.  ..+...-.++...|++++|...|++...  ..|+..
T Consensus       143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~  191 (208)
T 3urz_A          143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE  191 (208)
T ss_dssp             HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence            2222222222222  2333344556678999999999999874  456543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.06  E-value=0.0001  Score=52.84  Aligned_cols=111  Identities=5%  Similarity=-0.017  Sum_probs=77.9

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCCh--
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGNR--   77 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~~--   77 (250)
                      .+...|++++|...|+......|+ ...|.           .++|...|++..+.+ +.+...+..+..+ |...|++  
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            356678888898888887666333 23333           788888888887753 3466777777777 7788888  


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ++|...++...+.+ +.+...|..+...|...|++++|...+++....
T Consensus        98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            88999988877652 224567777888888999999999999887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.05  E-value=6.9e-05  Score=50.16  Aligned_cols=121  Identities=15%  Similarity=-0.032  Sum_probs=91.6

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .+...+..+...+...|++++|.+.++...+.. +.+...|..+..++...|++++|.+.+++....   .|        
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------   77 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DP--------   77 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT--------
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---Cc--------
Confidence            456778888899999999999999999877652 336678888889999999999999998877542   01        


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD  218 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  218 (250)
                                                                 .+...+..+...+.+.|++++|...|++..... +.+
T Consensus        78 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~  113 (131)
T 2vyi_A           78 -------------------------------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDN  113 (131)
T ss_dssp             -------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             -------------------------------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccc
Confidence                                                       112346667778889999999999999887542 335


Q ss_pred             CcchHHHHHHHHhcCCh
Q 037164          219 FGLPSSLIDAHCKNGLL  235 (250)
Q Consensus       219 ~~~~~~li~~~~~~g~~  235 (250)
                      ...+..+...+.+.|++
T Consensus       114 ~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          114 ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            66777777777777764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.05  E-value=0.00013  Score=51.29  Aligned_cols=81  Identities=6%  Similarity=-0.066  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.+ +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus        52 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            677777777776653 4567788888888888999999999888877642 23567788888888889999999998888


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       130 al~  132 (151)
T 3gyz_A          130 VIQ  132 (151)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.05  E-value=8.9e-05  Score=49.14  Aligned_cols=82  Identities=11%  Similarity=-0.034  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|.+.|+++.+. .+.+..++..+..+|.+.|++++|..+++++.+.. +.+..++..+...|...|++++|.+.+++
T Consensus        25 ~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           25 YDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34445555554443 23467788999999999999999999999988753 34677888999999999999999999998


Q ss_pred             HhhC
Q 037164          122 TESN  125 (250)
Q Consensus       122 m~~~  125 (250)
                      +...
T Consensus       103 ~~~~  106 (125)
T 1na0_A          103 ALEL  106 (125)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.03  E-value=0.0012  Score=53.15  Aligned_cols=206  Identities=11%  Similarity=0.010  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHHHHCCCCccH----HHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCC----chhHhhhHHHHHhcCCh
Q 037164           42 VGKAEMVVQEMKDMGFARRT----IYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGD----QFTLGIRPSAYAAASDI  112 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~----~~ty~~li~~~~~~~~~  112 (250)
                      .++|...+++.....-..+.    .+++.+-..|...|++++|.+.+++.....- .++    ..+++.+-..+...|++
T Consensus        30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~  109 (373)
T 1hz4_A           30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL  109 (373)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH
Confidence            78899999998775311222    2567777889999999999999998654211 112    23356777889999999


Q ss_pred             hHHHHHHHHHhhC---CCCC--cc-HHHHHHH---------HHHHHHHHHHHHhhhhccCC--chhhhc-------chhH
Q 037164          113 HGMDKIINMTESN---PQMV--LD-FNLLAVL---------LYMAMTMLKKSEGLIATKRN--SSNAFE-------LKDQ  168 (250)
Q Consensus       113 ~~a~~~~~~m~~~---~g~~--~~-~~~~~~l---------~~~a~~~~~~~~~~~~~~~~--~~~~~~-------~~~~  168 (250)
                      ++|.+.+++....   .+..  |. ...+..+         +++|...+.+..........  ....+.       ..++
T Consensus       110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  189 (373)
T 1hz4_A          110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD  189 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence            9999999886432   0222  32 2333333         88899888887633221111  000222       5566


Q ss_pred             HHHHHHHHhccC----CCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCCh
Q 037164          169 LYRIWKHYGQTR----KVFN-KGYM-----TMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLL  235 (250)
Q Consensus       169 ~~~~~~~~~~~~----~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~  235 (250)
                      .+++...++...    .++. ..+.     .....+...|+.++|...+++.......+.   ...+..+...+...|++
T Consensus       190 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  269 (373)
T 1hz4_A          190 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF  269 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence            666666554431    1111 1222     233457799999999999998764322111   11356778889999999


Q ss_pred             hHHHHHHHHHHh
Q 037164          236 EKAQSLINHAET  247 (250)
Q Consensus       236 ~~a~~~~~~m~~  247 (250)
                      ++|...+++..+
T Consensus       270 ~~A~~~l~~a~~  281 (373)
T 1hz4_A          270 EPAEIVLEELNE  281 (373)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.02  E-value=7.3e-05  Score=54.54  Aligned_cols=141  Identities=11%  Similarity=-0.001  Sum_probs=84.0

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHh----cCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEE----KSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL  134 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  134 (250)
                      ...+++.+-..|...|++++|...+++...    .|..| ...++..+-..|...|++++|.+.+++....         
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL---------   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence            456677777777778888888777776554    12222 2345666667777777777777777665432         


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037164          135 LAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN  214 (250)
Q Consensus       135 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  214 (250)
                                 ++     ..++.. .                     .....+..+-..+...|++++|...+++.....
T Consensus        96 -----------~~-----~~~~~~-~---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 -----------LA-----SLPEDP-L---------------------AASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             -----------HH-----HSCCCH-H---------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             -----------HH-----HcCccH-H---------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                       00     000000 0                     012345566677777788888877777755221


Q ss_pred             C-CCC----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          215 L-PYD----FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       215 ~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      . ..+    ..++..+-..|...|++++|...+++..+
T Consensus       138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            0 111    22346667777778888888877776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.02  E-value=0.00012  Score=49.22  Aligned_cols=120  Identities=11%  Similarity=-0.026  Sum_probs=87.4

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +.+...|..+...+.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+.+++....   .|       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~-------   81 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EP-------   81 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CT-------
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CC-------
Confidence            4566788888899999999999999999877642 236678888888999999999999988877542   00       


Q ss_pred             HHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037164          138 LLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY  217 (250)
Q Consensus       138 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  217 (250)
                                                                  .+...+..+-..+.+.|++++|...|++..... +.
T Consensus        82 --------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~  116 (133)
T 2lni_A           82 --------------------------------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SS  116 (133)
T ss_dssp             --------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GG
T ss_pred             --------------------------------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CC
Confidence                                                        122345667778888899999999998877432 22


Q ss_pred             CCcchHHHHHHHHhcC
Q 037164          218 DFGLPSSLIDAHCKNG  233 (250)
Q Consensus       218 ~~~~~~~li~~~~~~g  233 (250)
                      +...+..+...+...|
T Consensus       117 ~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A          117 CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             GTHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhc
Confidence            4555666666665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.01  E-value=0.00011  Score=49.81  Aligned_cols=81  Identities=5%  Similarity=-0.237  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|+..|++..+. -+.+..+|..+-.+|.+.|++++|...++...+.+ +.+...|..+-.+|...|++++|.+.|++
T Consensus        29 ~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           29 YPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34444444444433 24467788888888888888888888888776642 22456788888888888888888888888


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       107 al~  109 (126)
T 4gco_A          107 ALQ  109 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.00  E-value=8.7e-05  Score=54.73  Aligned_cols=108  Identities=14%  Similarity=0.061  Sum_probs=59.6

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKID   81 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~   81 (250)
                      .+.+.|++++|.+.|++...  ++...|.           .++|...|++..+.. +.+...|..+-.+|.+.|++++|.
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~   91 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   91 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHH
Confidence            44556777777777766532  2222222           566666666655542 334555666666666666666666


Q ss_pred             HHHHHHHhcCCCCCc----------------hhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           82 ALMLEMEEKSINGDQ----------------FTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        82 ~~~~~m~~~gi~p~~----------------~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +.|+...+.. +.+.                ..|..+-.+|.+.|++++|.+.|++...
T Consensus        92 ~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           92 KDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            6666555431 1111                4555555666666666666666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.98  E-value=4.4e-05  Score=67.15  Aligned_cols=170  Identities=10%  Similarity=-0.041  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHH--------HCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh
Q 037164           42 VGKAEMVVQEMK--------DMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH  113 (250)
Q Consensus        42 ~~~A~~~~~~m~--------~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~  113 (250)
                      .++|++.|++..        +. -+.+...+..+..+|.+.|++++|.+.+++..+.+ +.+...|..+-.+|...|+++
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~  484 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYD  484 (681)
T ss_dssp             HHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHH
Confidence            789999999987        43 34567889999999999999999999999887752 235678888999999999999


Q ss_pred             HHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHH
Q 037164          114 GMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMG  192 (250)
Q Consensus       114 ~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  192 (250)
                      +|.+.|++....   .| +...+..+   +. ++..+.+ .             ++ ...++..-...+.+...|..+-.
T Consensus       485 ~A~~~~~~al~l---~P~~~~~~~~l---g~-~~~~~g~-~-------------~~-~~~~~~al~~~P~~~~a~~~lg~  542 (681)
T 2pzi_A          485 SATKHFTEVLDT---FPGELAPKLAL---AA-TAELAGN-T-------------DE-HKFYQTVWSTNDGVISAAFGLAR  542 (681)
T ss_dssp             HHHHHHHHHHHH---STTCSHHHHHH---HH-HHHHHTC-C-------------CT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---CCCChHHHHHH---HH-HHHHcCC-h-------------HH-HHHHHHHHHhCCchHHHHHHHHH
Confidence            999999997643   12 22222211   00 0111110 0             01 11111111223344578889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhH
Q 037164          193 LLLKLDDVKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEK  237 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~  237 (250)
                      ++.+.|+.++|...|++...  ..| +...+..+..++...|+.++
T Consensus       543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~  586 (681)
T 2pzi_A          543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSE  586 (681)
T ss_dssp             HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------
T ss_pred             HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCC
Confidence            99999999999999998763  334 35667777777777776333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.98  E-value=4.3e-05  Score=67.20  Aligned_cols=171  Identities=12%  Similarity=-0.016  Sum_probs=116.0

Q ss_pred             hhccChhHHHHHHHHhh--------hhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc
Q 037164           15 FEVHGVEQAEIYFDNIS--------KLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT   74 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~--------~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~   74 (250)
                      ...|++++|.+.|+...        ...|+ ...+.           .++|.+.|++..+.+ +.+...|..+-.+|.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            56899999999999887        43233 22332           899999999998763 45678999999999999


Q ss_pred             CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Q 037164           75 GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIA  154 (250)
Q Consensus        75 g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~  154 (250)
                      |++++|.+.|++..+.. +-+...|..+-.+|.+.|++++ .+.|++....  -+.+...+..+   +            
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~l---g------------  541 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGL---A------------  541 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHH---H------------
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHH---H------------
Confidence            99999999999877752 2256788999999999999999 9999987653  11122222111   0            


Q ss_pred             ccCCchhhhcchhHHHHHHHHHhccCC--CC-hhhHHHHHHHHHhcCCH-----HHHHHHHHHHH
Q 037164          155 TKRNSSNAFELKDQLYRIWKHYGQTRK--VF-NKGYMTMMGLLLKLDDV-----KGAEKTLRNWT  211 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~-----~~A~~~~~~m~  211 (250)
                           . .|...++.+++.+.++....  |+ ...|..+..++...++.     +...+..+...
T Consensus       542 -----~-~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~  600 (681)
T 2pzi_A          542 -----R-ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE  600 (681)
T ss_dssp             -----H-HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred             -----H-HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence                 0 33355666777777766544  44 36677777777777763     44444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.97  E-value=0.00054  Score=57.14  Aligned_cols=94  Identities=12%  Similarity=-0.047  Sum_probs=49.4

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccccccc-----------h---hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQCLFFG-----------V---GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG   75 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~---~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g   75 (250)
                      +-..+.+.|++++|.++|....+.. ++..+.           .   ++|...|++..+.    ++..+..|-..+...|
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence            3446677899999999999886652 222222           3   8999999988764    5566777766555544


Q ss_pred             -----ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC
Q 037164           76 -----NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD  111 (250)
Q Consensus        76 -----~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~  111 (250)
                           ++++|.++|+.-.+.|..   ..+..|-..|...+.
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~  121 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPH  121 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGG
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCC
Confidence                 778999999987776532   245555555554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.96  E-value=0.00017  Score=61.94  Aligned_cols=107  Identities=7%  Similarity=-0.042  Sum_probs=73.0

Q ss_pred             ccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHH
Q 037164           17 VHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALM   84 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~   84 (250)
                      .|++++|.+.|++.....|+ ...|.           .++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            47889999999987766443 33333           899999999998863 456789999999999999999999999


Q ss_pred             HHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           85 LEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ++..+.. +.+...|..+-.+|.+.|++++|.+.+++....
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9887752 235678899999999999999999999998653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.96  E-value=0.00055  Score=54.02  Aligned_cols=198  Identities=9%  Similarity=-0.048  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhcCCCCCchhHhhhHHHH----Hhc---CChh
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG--NREKIDALMLEMEEKSINGDQFTLGIRPSAY----AAA---SDIH  113 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~----~~~---~~~~  113 (250)
                      ++|+.+++++...+ +-+..+||.--.++...|  ++++++++++.+...+ +-+..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            45666666665542 233455666666666666  6677777776665542 12344454433333    333   5666


Q ss_pred             HHHHHHHHHhhCCCCCccHHHHHHH---------HH--HHHHHHHHHHhhhhccCCchhhhc-------chh------HH
Q 037164          114 GMDKIINMTESNPQMVLDFNLLAVL---------LY--MAMTMLKKSEGLIATKRNSSNAFE-------LKD------QL  169 (250)
Q Consensus       114 ~a~~~~~~m~~~~g~~~~~~~~~~l---------~~--~a~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~  169 (250)
                      ++.++++.+...  -+-+...|+.-         .+  ++++.+.++.... |... + .|+       ..+      ..
T Consensus       128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~-s-AW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNN-S-AWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHSSGGGCCHHHH
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhccccchhhhH
Confidence            677766666542  22233333333         23  5555555555332 2222 1 333       222      25


Q ss_pred             HHHHHHHhcc---CCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          170 YRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDV-KGAEKTLRNWTSKN--LPYDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       170 ~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      ++.++.....   .+.+...|+.+-..+.+.|+. +.+..+..+....+  .+.++..+..+...|.+.|+.++|.++++
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            5566665543   235558888888888888874 44556777665432  24467788999999999999999999999


Q ss_pred             HHHh
Q 037164          244 HAET  247 (250)
Q Consensus       244 ~m~~  247 (250)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.95  E-value=0.00012  Score=58.59  Aligned_cols=147  Identities=8%  Similarity=-0.096  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----------------chhHhhhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----------------QFTLGIRPSA  105 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----------------~~ty~~li~~  105 (250)
                      +++|.+.|+...+.. +-+...|..+-..|.+.|++++|...|++..+.  .|+                ...|..+-.+
T Consensus       129 ~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          129 FEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            455555554433321 124678888999999999999999999987764  344                3788999999


Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164          106 YAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      |.+.|++++|.+.+++....   .|+                                                   +..
T Consensus       206 ~~~~g~~~~A~~~~~~al~~---~p~---------------------------------------------------~~~  231 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALEL---DSN---------------------------------------------------NEK  231 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CTT---------------------------------------------------CHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh---CCC---------------------------------------------------cHH
Confidence            99999999999999887643   111                                                   223


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHH-HHHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKA-QSLINHAE  246 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  246 (250)
                      .|..+-.+|...|++++|...|++.... .+.+...+..+...+.+.|+.++| ...+.+|.
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777788888888888877643 233456677777777777777777 44555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.95  E-value=0.00011  Score=50.72  Aligned_cols=81  Identities=9%  Similarity=-0.090  Sum_probs=61.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.+ +.+...|..+-.+|.+.|++++|...|+.....+ +.+...|..+-.+|...|++++|.+.|+.
T Consensus        34 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (142)
T 2xcb_A           34 WDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYS  111 (142)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455556665555442 4467788888888999999999999999877653 33566778888999999999999999988


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       112 al~  114 (142)
T 2xcb_A          112 ARA  114 (142)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.94  E-value=9.3e-05  Score=51.83  Aligned_cols=81  Identities=10%  Similarity=0.024  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      +++|++.+++..... +-+...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++
T Consensus        13 ~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           13 VERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            445555555544321 2234556667778888888888888888766642 22567777788888888888888888877


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus        91 al~   93 (150)
T 4ga2_A           91 SVE   93 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.93  E-value=0.00063  Score=50.87  Aligned_cols=146  Identities=6%  Similarity=-0.081  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch----hHhhhHHHHHh------------------cCChhHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF----TLGIRPSAYAA------------------ASDIHGMDKI  118 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~----ty~~li~~~~~------------------~~~~~~a~~~  118 (250)
                      ...+..+..+|.+.|++++|...|++..+.  .|+..    .+-.+-.++.+                  .|++++|.+.
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            356777888999999999999999988764  24332    33334444443                  5789999999


Q ss_pred             HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC--CCh----hhHHHHHH
Q 037164          119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFN----KGYMTMMG  192 (250)
Q Consensus       119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~li~  192 (250)
                      |+++...  .+-+...+.+. .....+.............   .|...++...+...++....  |+.    ..+..+..
T Consensus       119 ~~~~l~~--~P~~~~a~~a~-~~l~~~~~~~~~~~~~~a~---~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~  192 (225)
T 2yhc_A          119 FSKLVRG--YPNSQYTTDAT-KRLVFLKDRLAKYEYSVAE---YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN  192 (225)
T ss_dssp             HHHHHTT--CTTCTTHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHH--CcCChhHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH
Confidence            9998754  21112222111 0001111111100000000   33355666666666655422  332    45778889


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC
Q 037164          193 LLLKLDDVKGAEKTLRNWTSKN  214 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~~~  214 (250)
                      ++.+.|+.++|.+.++.+...+
T Consensus       193 ~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          193 AYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCcHHHHHHHHHHHhhC
Confidence            9999999999999999887543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.93  E-value=6.9e-05  Score=52.52  Aligned_cols=109  Identities=14%  Similarity=0.012  Sum_probs=84.9

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcc-ccc-cc----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQ-CLF-FG----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKI   80 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~-y~----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a   80 (250)
                      ++...|++++|...|.......|. +.. |.          .++|++.|++..+.+ +-+..+|..+-.+|.+.|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            445678899999988876555332 222 22          899999999998863 45788999999999999999999


Q ss_pred             HHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHH-HHHHhh
Q 037164           81 DALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKI-INMTES  124 (250)
Q Consensus        81 ~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~-~~~m~~  124 (250)
                      ...|+...+.  .| +...|..+-..|.+.|++++|.+. +++..+
T Consensus        85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999987764  45 567889999999999999877665 576543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.91  E-value=0.00014  Score=51.11  Aligned_cols=81  Identities=9%  Similarity=-0.131  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+. .+.+..++..+..+|...|++++|.+.++...+.. +.+...|..+..++...|++++|.+.+++
T Consensus        29 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  106 (166)
T 1a17_A           29 YENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYET  106 (166)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45555555555443 23456778888888888888888888888776652 23566777788888888888888888888


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       107 a~~  109 (166)
T 1a17_A          107 VVK  109 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.90  E-value=0.00013  Score=51.07  Aligned_cols=81  Identities=5%  Similarity=-0.114  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++....+ +.+...|..+-.+|.+.|++++|...|+...+.+ +.+...|..+-.+|...|++++|.+.|+.
T Consensus        37 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  114 (148)
T 2vgx_A           37 YEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFL  114 (148)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            566666666665542 4567788888888999999999999999877652 23567788888999999999999999988


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       115 al~  117 (148)
T 2vgx_A          115 AQE  117 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.90  E-value=0.00011  Score=52.71  Aligned_cols=109  Identities=8%  Similarity=-0.111  Sum_probs=61.0

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHH-HhhcCChh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMIL-NYLTGNRE   78 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~-~~~~g~~~   78 (250)
                      ..+.+.|++++|...|+......|+. ..+.           .++|...|++..+..  |+...+..+... +...++..
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~   91 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES   91 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence            34566777777777777765553332 2222           677777777765532  333332222111 12222333


Q ss_pred             hHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ++...++...+.  .| +...+..+-..+...|++++|...|++...
T Consensus        92 ~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  136 (176)
T 2r5s_A           92 PELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILK  136 (176)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            456666655543  34 356666677777777777777777777654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.86  E-value=0.00086  Score=52.78  Aligned_cols=143  Identities=9%  Similarity=0.026  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCC
Q 037164           80 IDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRN  158 (250)
Q Consensus        80 a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~  158 (250)
                      +...|++..+.+ .++..++..+..++...|++++|++++.+.... +-.++ ...+..+        -.          
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~--------vq----------  144 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLA--------IE----------  144 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHH--------HH----------
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHH--------HH----------
Confidence            677777766555 566666667789999999999999999987543 32112 1221111        00          


Q ss_pred             chhhhcchhHHHHHHHHHhccCC--C-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 037164          159 SSNAFELKDQLYRIWKHYGQTRK--V-----FNKGYMTMMGL--LLKLD--DVKGAEKTLRNWTSKNLPYDFGLPSSLID  227 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~  227 (250)
                         .+.+.++.+.+.+.++.+..  |     +..+...+..+  ....|  +..+|..+|+++...  .|+..+-..|+.
T Consensus       145 ---i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln  219 (310)
T 3mv2_B          145 ---VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLN  219 (310)
T ss_dssp             ---HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHH
T ss_pred             ---HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHH
Confidence               11122333333333333211  2     23445555555  33334  899999999998643  344233445566


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 037164          228 AHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       228 ~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++.+.|++++|++.++.+.+
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            89999999999999987654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.86  E-value=0.0005  Score=54.10  Aligned_cols=195  Identities=10%  Similarity=-0.006  Sum_probs=116.8

Q ss_pred             ccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhc-
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDM----GFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEK-   90 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~----~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-   90 (250)
                      .++++.|..+|...-.......-  .++|...|.+..+.    +-.+ -..+|+.+..+|.+.|++++|...+++..+. 
T Consensus        29 ~~~~~~A~~~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  106 (307)
T 2ifu_A           29 KPDYDSAASEYAKAAVAFKNAKQ--LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY  106 (307)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            47888999988876432111111  55666666555432    1111 2468899999999999999999999975442 


Q ss_pred             ---CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhh
Q 037164           91 ---SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLI  153 (250)
Q Consensus        91 ---gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~  153 (250)
                         |-.+ -..+|+.+-..|.. |++++|.+.|++....   .+-.+. ..++..+         +++|...|++.....
T Consensus       107 ~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          107 VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               2111 13577888888988 9999999999986532   011110 1222222         455555554444222


Q ss_pred             hccCCchhhhcchhHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc------chHHHH
Q 037164          154 ATKRNSSNAFELKDQLYRIWKHYGQTRKVF-NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG------LPSSLI  226 (250)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li  226 (250)
                      .....                      .+. ...+..+...+...|+.++|...|++.. .  .|+..      ....++
T Consensus       186 ~~~~~----------------------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~  240 (307)
T 2ifu_A          186 KEMEN----------------------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLL  240 (307)
T ss_dssp             HHTTC----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHH
T ss_pred             HHcCC----------------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHH
Confidence            11100                      011 2356677778888899999999999987 3  33221      234455


Q ss_pred             HHHHhcCChhHHHH
Q 037164          227 DAHCKNGLLEKAQS  240 (250)
Q Consensus       227 ~~~~~~g~~~~a~~  240 (250)
                      .++ ..|+.+.+..
T Consensus       241 ~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          241 QAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHH-HTTCHHHHHH
T ss_pred             HHH-HhcCHHHHHH
Confidence            555 5677766655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.81  E-value=0.00082  Score=43.80  Aligned_cols=82  Identities=6%  Similarity=-0.094  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+. .+.+...+..+..+|.+.|++++|...+++..+.. +.+...|..+..++...|++++|.+.+++
T Consensus        20 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   97 (118)
T 1elw_A           20 IDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEE   97 (118)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34444444444433 23467788888888999999999999999877652 23567788888999999999999999998


Q ss_pred             HhhC
Q 037164          122 TESN  125 (250)
Q Consensus       122 m~~~  125 (250)
                      ....
T Consensus        98 ~~~~  101 (118)
T 1elw_A           98 GLKH  101 (118)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            8653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.81  E-value=0.00052  Score=44.38  Aligned_cols=81  Identities=5%  Similarity=-0.087  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhc-CChhHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAA-SDIHGMDKII  119 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~-~~~~~a~~~~  119 (250)
                      ++|...|++..+. .+.+..+|..+..+|.+.|++++|.+.+++..+.. +.  +...|..+..++.+. |++++|.+.+
T Consensus        23 ~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           23 TESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3444444444333 23456788889999999999999999999887652 22  477888899999999 9999999999


Q ss_pred             HHHhhC
Q 037164          120 NMTESN  125 (250)
Q Consensus       120 ~~m~~~  125 (250)
                      +.....
T Consensus       101 ~~~~~~  106 (112)
T 2kck_A          101 ARAKLE  106 (112)
T ss_dssp             HHHGGG
T ss_pred             HHHhhc
Confidence            998654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.80  E-value=0.00055  Score=48.88  Aligned_cols=116  Identities=6%  Similarity=-0.099  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHH-HHhcCCh--hHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSA-YAAASDI--HGMDKI  118 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~-~~~~~~~--~~a~~~  118 (250)
                      .++|...|++..+.. +.+...|..+..+|...|++++|...|+...+.. +.+...|..+..+ +...|++  ++|.+.
T Consensus        26 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~  103 (177)
T 2e2e_A           26 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM  103 (177)
T ss_dssp             -CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            566777777776653 4466778888888888888888888888766542 2245566666666 6677777  778777


Q ss_pred             HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 037164          119 INMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLD  198 (250)
Q Consensus       119 ~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  198 (250)
                      +++....   .|                                                   .+...+..+...|...|
T Consensus       104 ~~~al~~---~p---------------------------------------------------~~~~~~~~la~~~~~~g  129 (177)
T 2e2e_A          104 IDKALAL---DS---------------------------------------------------NEITALMLLASDAFMQA  129 (177)
T ss_dssp             HHHHHHH---CT---------------------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHh---CC---------------------------------------------------CcHHHHHHHHHHHHHcc
Confidence            7766542   01                                                   12344666777888899


Q ss_pred             CHHHHHHHHHHHHhC
Q 037164          199 DVKGAEKTLRNWTSK  213 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~  213 (250)
                      ++++|...|++....
T Consensus       130 ~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          130 NYAQAIELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999988754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00046  Score=46.29  Aligned_cols=81  Identities=10%  Similarity=-0.167  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+. -+.+...|..+-.+|.+.|++++|...++...+.+ +.+...|..+-.++...|++++|.+.|++
T Consensus        20 ~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~   97 (126)
T 3upv_A           20 WPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA   97 (126)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            34444444444443 23456788888888888888888888888876642 22456777788888888888888888887


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus        98 al~  100 (126)
T 3upv_A           98 ART  100 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.78  E-value=0.00038  Score=51.46  Aligned_cols=158  Identities=9%  Similarity=-0.088  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhh----------------hHHHHHhcCChhHHHHHHHHHhhCC
Q 037164           64 CYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGI----------------RPSAYAAASDIHGMDKIINMTESNP  126 (250)
Q Consensus        64 y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~----------------li~~~~~~~~~~~a~~~~~~m~~~~  126 (250)
                      +-.....+.+.|++++|...|+...+.  .|+ ...|..                +-.+|.+.|++++|...|++.... 
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   83 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-   83 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            334445677889999999999987664  343 345555                889999999999999999998653 


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCC--HH
Q 037164          127 QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDD--VK  201 (250)
Q Consensus       127 g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~--~~  201 (250)
                       -+-+...+..+   +.                  +|...++.+++.+.++..   .+.+...|..+-..|...|+  .+
T Consensus        84 -~p~~~~~~~~l---g~------------------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~  141 (208)
T 3urz_A           84 -APNNVDCLEAC---AE------------------MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK  141 (208)
T ss_dssp             -CTTCHHHHHHH---HH------------------HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHH---HH------------------HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence             12223333222   00                  111223333333333322   22334567777667665543  34


Q ss_pred             HHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          202 GAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       202 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      .+...++...  ...|....+..+-.++...|++++|...|++.++.
T Consensus       142 ~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          142 KLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5555555543  12222223444555677789999999999988753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.0012  Score=54.08  Aligned_cols=155  Identities=9%  Similarity=0.022  Sum_probs=98.8

Q ss_pred             HHhhcCChhhHHHHHHHHHhcCCCC-Cc---------------hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH
Q 037164           70 LNYLTGNREKIDALMLEMEEKSING-DQ---------------FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN  133 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~~gi~p-~~---------------~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~  133 (250)
                      .+.+.|++++|.+.+....+..-.. +.               ..+..+...|.+.|++++|.+.+.++....+-.++..
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~   92 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence            4567889999999998877642221 11               1366788999999999999999988754211222221


Q ss_pred             HH----HHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC-CC-hhhHHHHHHHHHhcC
Q 037164          134 LL----AVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK-VF-NKGYMTMMGLLLKLD  198 (250)
Q Consensus       134 ~~----~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g  198 (250)
                      +-    +.+         .+++..++.+..                       ........ +. ..++..+...|...|
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~la~~~~~~g  149 (434)
T 4b4t_Q           93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSI-----------------------EFAKREKRVFLKHSLSIKLATLHYQKK  149 (434)
T ss_dssp             HHHHHHHHHHHHCSCCSCHHHHHHHHHHHH-----------------------HHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------------------HHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence            11    111         233333332222                       11111111 22 356778889999999


Q ss_pred             CHHHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          199 DVKGAEKTLRNWTSKNLPY-----DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       199 ~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++++|..++++....-...     .+.++..++..|...|++++|..++++...
T Consensus       150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999876432222     245788889999999999999999887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.76  E-value=0.00062  Score=44.02  Aligned_cols=63  Identities=13%  Similarity=0.029  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ...+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|.+.+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~   68 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN   68 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3455555566666666666666666655432 22445555566666666666666666665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.74  E-value=0.00049  Score=46.16  Aligned_cols=81  Identities=7%  Similarity=-0.215  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+. .+.+..++..+..+|...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+.+++
T Consensus        32 ~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  109 (133)
T 2lni_A           32 YPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQK  109 (133)
T ss_dssp             SHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34444555554443 23467888899999999999999999999877752 23567888888999999999999999998


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       110 ~~~  112 (133)
T 2lni_A          110 ALD  112 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.74  E-value=0.0029  Score=49.09  Aligned_cols=88  Identities=8%  Similarity=-0.157  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      +...+..+-..+.+.|++++|...|++..+.  .| +...|..+-.+|.+.|++++|.+.+++....  -+.+...+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            4456666666777777777777777765553  23 5566666667777777777777777766542  11223333333


Q ss_pred             ---------HHHHHHHHHHHHh
Q 037164          139 ---------LYMAMTMLKKSEG  151 (250)
Q Consensus       139 ---------~~~a~~~~~~~~~  151 (250)
                               +++|...|.+...
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence                     6666666666653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.73  E-value=0.00039  Score=46.32  Aligned_cols=82  Identities=7%  Similarity=-0.146  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+. .+.+...+..+..+|...|++++|.+.++...+.. +.+...|..+...|.+.|++++|.+.+++
T Consensus        28 ~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           28 FEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            44555555555443 23456788888888888999999999988877652 23467778888888899999999999888


Q ss_pred             HhhC
Q 037164          122 TESN  125 (250)
Q Consensus       122 m~~~  125 (250)
                      ....
T Consensus       106 ~~~~  109 (131)
T 2vyi_A          106 ALEL  109 (131)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.72  E-value=0.00029  Score=48.86  Aligned_cols=139  Identities=14%  Similarity=-0.031  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCC-CC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSIN-GD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLL  135 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~-p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~  135 (250)
                      ..++..+-..|...|++++|.+.+++..+..-. ++    ..++..+-..+...|++++|.+.+++....          
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------   78 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL----------   78 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence            457888888999999999999999886553111 11    147778889999999999999998876542          


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 037164          136 AVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--  213 (250)
Q Consensus       136 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--  213 (250)
                                ....      ... .                     .....+..+-..+...|++++|...+++....  
T Consensus        79 ----------~~~~------~~~-~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           79 ----------ARQL------KDR-A---------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             ----------HHHT------TCH-H---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHh------CCc-H---------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                      0000      000 0                     01234556677778888888888888876532  


Q ss_pred             --CCC-CCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          214 --NLP-YDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       214 --~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                        +.+ ....++..+...|...|++++|...+++..+
T Consensus       121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              111 1234567777888888888888888887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.72  E-value=0.00036  Score=49.03  Aligned_cols=96  Identities=6%  Similarity=-0.102  Sum_probs=58.4

Q ss_pred             hhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHH
Q 037164           97 FTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHY  176 (250)
Q Consensus        97 ~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (250)
                      ..+..+-..+.+.|++++|.+.|++....   .|                                              
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P----------------------------------------------   67 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DF----------------------------------------------   67 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----------------------------------------------
Confidence            45666667777888888888888776542   11                                              


Q ss_pred             hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          177 GQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       177 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                           .+...|..+-.+|.+.|++++|...|++..... +.++..|..+-.+|.+.|++++|...|++.++
T Consensus        68 -----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A           68 -----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 122345555566666666666666666655322 23455566666666666666666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.70  E-value=0.0006  Score=48.15  Aligned_cols=81  Identities=12%  Similarity=-0.042  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|.+.|++
T Consensus        27 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           27 YSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGAKEAYEK  104 (164)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            344444444444432 3467788888888999999999999999877653 23567788888999999999999999988


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       105 al~  107 (164)
T 3sz7_A          105 GIE  107 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.70  E-value=0.0041  Score=48.38  Aligned_cols=63  Identities=10%  Similarity=-0.026  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-----NLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..|+.+-..|...|++++|...|++....     +..+ ...++..+...|.+.|++++|...+++.++
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            36888999999999999999999998731     1222 234788999999999999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=0.0016  Score=42.38  Aligned_cols=98  Identities=16%  Similarity=0.014  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLL  139 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~  139 (250)
                      ++..+..+...+...|++++|.+.++...... +.+...|..+..++...|++++|...+++....   .|         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---------   69 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KP---------   69 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT---------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---Cc---------
Confidence            45678888888999999999999999877652 336677888888999999999999888877542   01         


Q ss_pred             HHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          140 YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                                                                .+...+..+..++...|++++|...+++...
T Consensus        70 ------------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           70 ------------------------------------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             ------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ------------------------------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                                                      1223466677788889999999999988774

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.69  E-value=0.00049  Score=50.26  Aligned_cols=133  Identities=10%  Similarity=-0.140  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCC--------------chhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGD--------------QFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~--------------~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ...+..+-..+.+.|++++|.+.|++..+..- .|+              ...|..+-.+|.+.|++++|...+++....
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            35566777788889999999999988766311 111              167777778888888888888888776542


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164          126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK  205 (250)
Q Consensus       126 ~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  205 (250)
                         .|                                                   .+...|..+-.+|...|++++|..
T Consensus       118 ---~p---------------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~  143 (198)
T 2fbn_A          118 ---DK---------------------------------------------------NNVKALYKLGVANMYFGFLEEAKE  143 (198)
T ss_dssp             ---ST---------------------------------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ---Cc---------------------------------------------------ccHHHHHHHHHHHHHcccHHHHHH
Confidence               01                                                   123345566677788888888888


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 037164          206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ-SLINHAETK  248 (250)
Q Consensus       206 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~  248 (250)
                      .|++.... .+-+..++..+...+...++.+++. ..+..|...
T Consensus       144 ~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          144 NLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88887643 2334566777777777777766666 555555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.67  E-value=0.00081  Score=45.55  Aligned_cols=63  Identities=6%  Similarity=-0.172  Sum_probs=39.0

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      +...|..+..+|...|++++|...++...+.+ +.+...|..+-.+|...|++++|.+.|++..
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           42 VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45566666666666666666666666655532 2244556666666666666666666666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.67  E-value=0.00037  Score=55.74  Aligned_cols=63  Identities=10%  Similarity=-0.103  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ..+|..+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|...|++...
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  258 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  258 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4788889999999999999999999877752 33667888888999999999999999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.66  E-value=0.00047  Score=46.70  Aligned_cols=82  Identities=9%  Similarity=0.025  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC--CCCC----chhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS--INGD----QFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--i~p~----~~ty~~li~~~~~~~~~~~a  115 (250)
                      .++|+..|++..+. -+.+..+|+.+-.+|.+.|++++|++.++...+.+  ..++    ..+|..+-.++...|++++|
T Consensus        24 ~~~A~~~y~~Al~~-~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           24 FEKAHVHYDKAIEL-DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34444444444433 23456777888888888888888888888765421  1111    13566666777788888888


Q ss_pred             HHHHHHHhh
Q 037164          116 DKIINMTES  124 (250)
Q Consensus       116 ~~~~~~m~~  124 (250)
                      .+.|++...
T Consensus       103 ~~~~~kal~  111 (127)
T 4gcn_A          103 VQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.66  E-value=0.00012  Score=48.78  Aligned_cols=82  Identities=7%  Similarity=-0.120  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHCC--CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           43 GKAEMVVQEMKDMG--FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        43 ~~A~~~~~~m~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      ++|+..|++..+.+  -+.+..+|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.++
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45666666666543  23456788899999999999999999999987762 2356788888999999999999999999


Q ss_pred             HHhhC
Q 037164          121 MTESN  125 (250)
Q Consensus       121 ~m~~~  125 (250)
                      +....
T Consensus        86 ~al~~   90 (117)
T 3k9i_A           86 KIIAE   90 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.003  Score=51.76  Aligned_cols=203  Identities=9%  Similarity=-0.039  Sum_probs=123.0

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc-ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL-FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEM   87 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~-~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m   87 (250)
                      .+.+.|++++|.+.|..+.+..++.. .+.    ........           ...+..|...|...|++++|.+++...
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~al~~l~~~y~~~~~~~~a~~~~~~~   81 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQ-----------ETSILELGQLYVTMGAKDKLREFIPHS   81 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45678999999999988877633322 222    11211111           124577888999999999999999886


Q ss_pred             Hhc-CCCCCch----hHhhhHHHHHhcCChhHHHHHHHHHhhC---CCCCccH-HHHHHH---------HHHHHHHHHHH
Q 037164           88 EEK-SINGDQF----TLGIRPSAYAAASDIHGMDKIINMTESN---PQMVLDF-NLLAVL---------LYMAMTMLKKS  149 (250)
Q Consensus        88 ~~~-gi~p~~~----ty~~li~~~~~~~~~~~a~~~~~~m~~~---~g~~~~~-~~~~~l---------~~~a~~~~~~~  149 (250)
                      ... +-.++..    +.+.+-..+...|+++.|.+++++....   .+..+.. .++..+         +++|..++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q           82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL  161 (434)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            542 1122222    2233334445568889998888775321   1333322 222222         55555555555


Q ss_pred             HhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--CcchH
Q 037164          150 EGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK--NLP-Y-D--FGLPS  223 (250)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-~-~--~~~~~  223 (250)
                      ..........                     +....+|..++..|...|++++|..++++....  ... | .  ..++.
T Consensus       162 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  220 (434)
T 4b4t_Q          162 LREFKKLDDK---------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL  220 (434)
T ss_dssp             HHHHTTSSCS---------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHhcccc---------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence            4222111110                     012367888899999999999999999886532  121 1 1  24566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 037164          224 SLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       224 ~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+...+...|+++.|...|.+..+
T Consensus       221 ~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          221 MSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            777778888999999998877654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.61  E-value=0.0012  Score=44.64  Aligned_cols=97  Identities=9%  Similarity=0.003  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY  140 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~  140 (250)
                      ...+..+-..|.+.|++++|.+.|++..+.+ +.+...|..+-.+|.+.|++++|.+.+++....   .|          
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p----------   78 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DS----------   78 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hh----------
Confidence            4567788888999999999999999877652 336778888889999999999999988877542   11          


Q ss_pred             HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                                                               .+...|..+-.+|...|++++|...|++...
T Consensus        79 -----------------------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           79 -----------------------------------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                     1234466777888888999999999988775

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.61  E-value=0.0005  Score=45.82  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC--CCC----chhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI--NGD----QFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi--~p~----~~ty~~li~~~~~~~~~~~a  115 (250)
                      .++|...|++..+. .+.+...+..+..+|...|++++|..+++...+..-  .++    ..+|..+..+|.+.|++++|
T Consensus        20 ~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   98 (131)
T 1elr_A           20 FDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA   98 (131)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34444444444433 234667888888889999999999999998766421  222    66788888899999999999


Q ss_pred             HHHHHHHhhC
Q 037164          116 DKIINMTESN  125 (250)
Q Consensus       116 ~~~~~~m~~~  125 (250)
                      .+.|++....
T Consensus        99 ~~~~~~~~~~  108 (131)
T 1elr_A           99 IHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.60  E-value=0.00056  Score=45.10  Aligned_cols=80  Identities=5%  Similarity=-0.075  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      +.|...|++..+.. +.+...+..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++.
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46788888887763 4568899999999999999999999999987753 235678888999999999999999999987


Q ss_pred             hh
Q 037164          123 ES  124 (250)
Q Consensus       123 ~~  124 (250)
                      ..
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.59  E-value=0.00081  Score=44.77  Aligned_cols=118  Identities=8%  Similarity=-0.012  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLY  140 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~  140 (250)
                      ...|..+...+...|++++|..+++...+.. +.+...|..+..+|...|++++|...+++.... .             
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-------------   68 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-G-------------   68 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H-------------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-c-------------
Confidence            4678888899999999999999999987753 346778888899999999999999999887543 0             


Q ss_pred             HHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 037164          141 MAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFG  220 (250)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  220 (250)
                                    |.....     .              ......|..+...+.+.|++++|...|++....  .|+..
T Consensus        69 --------------~~~~~~-----~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~  113 (131)
T 1elr_A           69 --------------RENRED-----Y--------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPD  113 (131)
T ss_dssp             --------------HHSTTC-----H--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             --------------cccchh-----H--------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHH
Confidence                          000000     0              000345667788899999999999999998864  34544


Q ss_pred             chHHHHHH
Q 037164          221 LPSSLIDA  228 (250)
Q Consensus       221 ~~~~li~~  228 (250)
                      .+..+-..
T Consensus       114 ~~~~l~~~  121 (131)
T 1elr_A          114 VLKKCQQA  121 (131)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.59  E-value=0.00049  Score=50.02  Aligned_cols=110  Identities=14%  Similarity=0.026  Sum_probs=73.8

Q ss_pred             hhccChhHHHHHHHHhhhhh-ccccccc-----------hhHHHHHHHHHHH----CCC-CccHHHHHHHHHHHhhcCCh
Q 037164           15 FEVHGVEQAEIYFDNISKLL-RQCLFFG-----------VGKAEMVVQEMKD----MGF-ARRTIYCYIMMILNYLTGNR   77 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~-~~~~~y~-----------~~~A~~~~~~m~~----~~~-~p~~~~y~~li~~~~~~g~~   77 (250)
                      ...|++++|.+.++.+.... .....+.           .++|...|++..+    .+. +....+++.+-..|...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45789999999444443321 1122222           7888888888755    222 23456788888999999999


Q ss_pred             hhHHHHHHHHHhc----CCCC--CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           78 EKIDALMLEMEEK----SING--DQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        78 ~~a~~~~~~m~~~----gi~p--~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ++|.+.+++..+.    +-.|  ....+..+-..+...|++++|.+.+++...
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999986543    2111  234577888999999999999999987753

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.56  E-value=0.0057  Score=45.18  Aligned_cols=148  Identities=9%  Similarity=-0.055  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC----ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChh
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG----NREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIH  113 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~  113 (250)
                      .++|...|++..+.|   ++..+..|-..|.. +    ++++|.++|+...+.|   +...+..|-..|..    .++++
T Consensus        34 ~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~  106 (212)
T 3rjv_A           34 YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVA  106 (212)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHH
Confidence            789999999998875   56788888888888 7    8999999999987764   56777788888877    88999


Q ss_pred             HHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHHHHHH-hhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHH
Q 037164          114 GMDKIINMTESNPQMVL-DFNLLAVLLYMAMTMLKKSE-GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMT  189 (250)
Q Consensus       114 ~a~~~~~~m~~~~g~~~-~~~~~~~l~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  189 (250)
                      +|.++|++.... |... ....+..+        -.+- .+..          ...+..++...++....  .+...+..
T Consensus       107 ~A~~~~~~A~~~-~~~~~~~~a~~~L--------g~~y~~g~g----------~~~d~~~A~~~~~~A~~~~~~~~a~~~  167 (212)
T 3rjv_A          107 HAITLLQDAARD-SESDAAVDAQMLL--------GLIYASGVH----------GPEDDVKASEYFKGSSSLSRTGYAEYW  167 (212)
T ss_dssp             HHHHHHHHHTSS-TTSHHHHHHHHHH--------HHHHHHTSS----------SSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             HHHHHHHHHHHc-CCCcchHHHHHHH--------HHHHHcCCC----------CCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999998776 5420 12222111        1111 1110          02233444444433321  23445666


Q ss_pred             HHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 037164          190 MMGLLLKL-D-----DVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       190 li~~~~~~-g-----~~~~A~~~~~~m~~~~~  215 (250)
                      |-..|.+. |     +.++|..+|++....|.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            66666553 3     89999999998876554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.55  E-value=0.00078  Score=45.16  Aligned_cols=79  Identities=4%  Similarity=-0.135  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      ++|...|++..+. -+.+...|..+-.++.+.|++++|...|++..+.  .| +...|..+-.++.+.|++++|...+++
T Consensus        34 ~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           34 AEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444444444433 2346778888888888999999999999877664  34 456777888888999999999999888


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus       111 al~  113 (121)
T 1hxi_A          111 WLL  113 (121)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.54  E-value=0.00096  Score=46.46  Aligned_cols=29  Identities=17%  Similarity=0.037  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      ...|..+-.+|...|++++|...|++...
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35566666777777777777777777653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.53  E-value=0.0016  Score=43.51  Aligned_cols=62  Identities=10%  Similarity=-0.043  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ..+..+..+|.+.|++++|...++...+..  |+    ...+..+-.++.+.|++++|.+.|++....
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467778888999999999999999877652  33    456777888999999999999999988653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.53  E-value=0.0018  Score=50.33  Aligned_cols=180  Identities=9%  Similarity=-0.045  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHH-------HHHHhhcCChhhHHHHHHHHHhcCCCCCchh----------------
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIM-------MILNYLTGNREKIDALMLEMEEKSINGDQFT----------------   98 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~l-------i~~~~~~g~~~~a~~~~~~m~~~gi~p~~~t----------------   98 (250)
                      ...|.+.|.+..+.. +-....|+.+       ...+.+.+...++...+.  ...++.|+...                
T Consensus        22 ~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           22 EARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS--GSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             HHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH--HHhcCChhhhhhhhccCCccccccccc
Confidence            677888888887753 3456777777       455666666666555554  45556554422                


Q ss_pred             ------HhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHH
Q 037164           99 ------LGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRI  172 (250)
Q Consensus        99 ------y~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                            +-.+...+...|++++|.++|+.+... +  |+......+   +.                  .+...++..++
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~--p~~~~~~~~---a~------------------l~~~~~r~~dA  154 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVA-G--SEHLVAWMK---AV------------------VYGAAERWTDV  154 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-T--CHHHHHHHH---HH------------------HHHHTTCHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CchHHHHHH---HH------------------HHHHcCCHHHH
Confidence                  122557889999999999999888653 2  433211111   00                  11133334444


Q ss_pred             HHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHhcCChhHHHHHHHHH
Q 037164          173 WKHYGQTRK-VF----NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD--FGLPSSLIDAHCKNGLLEKAQSLINHA  245 (250)
Q Consensus       173 ~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m  245 (250)
                      ...++.... ++    ...+..+-.++...|++++|+..|++.......|.  ...+..+-.++.+.|+.++|..+|+++
T Consensus       155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444443332 21    23566777899999999999999999874322153  335667777888999999999999998


Q ss_pred             Hhc
Q 037164          246 ETK  248 (250)
Q Consensus       246 ~~~  248 (250)
                      ...
T Consensus       235 ~a~  237 (282)
T 4f3v_A          235 QTT  237 (282)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.52  E-value=0.0033  Score=55.10  Aligned_cols=170  Identities=7%  Similarity=0.061  Sum_probs=123.3

Q ss_pred             hhHHH-HHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC---------CCC------------chhH
Q 037164           42 VGKAE-MVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI---------NGD------------QFTL   99 (250)
Q Consensus        42 ~~~A~-~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi---------~p~------------~~ty   99 (250)
                      .++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.......         .|+            ...|
T Consensus       359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW  437 (679)
T 4e6h_A          359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY  437 (679)
T ss_dssp             CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence            67786 999998764 566777788888889999999999999998876410         142            2468


Q ss_pred             hhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHH--------HHHHHHHHHHHHhhhhccCCch-hhhc----c
Q 037164          100 GIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVL--------LYMAMTMLKKSEGLIATKRNSS-NAFE----L  165 (250)
Q Consensus       100 ~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l--------~~~a~~~~~~~~~~~~~~~~~~-~~~~----~  165 (250)
                      ...+....+.|+.+.|.++|....+. +...+...+..+.        .+.|.++|+...+.. |..... ..|.    .
T Consensus       438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHh
Confidence            88888888999999999999998765 3444555544333        578888888888653 344311 0222    5


Q ss_pred             hhHHHHHHHHHhccCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          166 KDQLYRIWKHYGQTRK--V----FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       166 ~~~~~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                      .++.+++-.+++....  +    ....|...+.--.+.|+.+.+.++.+++...
T Consensus       517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5666777777766433  3    2377888888889999999999999999864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.50  E-value=0.022  Score=44.82  Aligned_cols=202  Identities=7%  Similarity=-0.074  Sum_probs=129.6

Q ss_pred             hccCh-hHHHHHHHHhhhhhccc-cccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHH----hhc--
Q 037164           16 EVHGV-EQAEIYFDNISKLLRQC-LFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILN----YLT--   74 (250)
Q Consensus        16 k~~~~-~~a~~~f~~~~~~~~~~-~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~----~~~--   74 (250)
                      +.|.. ++|.++++.+....|+- ..|+             +++++++++.+...+ +-+..+|+.--..+    .+.  
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence            34444 67999999887763332 2333             578899999988764 44566776665555    555  


Q ss_pred             -CChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh--HHHHHHHHHhhCCCCCccHHHHHHH-------------
Q 037164           75 -GNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH--GMDKIINMTESNPQMVLDFNLLAVL-------------  138 (250)
Q Consensus        75 -g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~--~a~~~~~~m~~~~g~~~~~~~~~~l-------------  138 (250)
                       +++++++++++.+.+.. +-|...|+.---...+.|+++  ++.+.++++...  -+-+...|+.-             
T Consensus       123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchh
Confidence             78999999999988763 337788888877888888888  999999988764  22344444433             


Q ss_pred             --HHHHHHHHHHHHhhhhccCCchhhhc-----------chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHH
Q 037164          139 --LYMAMTMLKKSEGLIATKRNSSNAFE-----------LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKG  202 (250)
Q Consensus       139 --~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  202 (250)
                        ++++++.+.++.... |.+. + .|+           ....+....+.+-...   +.+...+..+...|.+.|+.++
T Consensus       200 ~~~~eEl~~~~~aI~~~-p~n~-S-aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~  276 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKC-PQNP-S-TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE  276 (306)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCH-H-HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhC-CCCc-c-HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence              344555555554333 3333 2 444           1222333333222222   3566778888899999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchHH
Q 037164          203 AEKTLRNWTSKNLPYDFGLPSS  224 (250)
Q Consensus       203 A~~~~~~m~~~~~~~~~~~~~~  224 (250)
                      |.++++.+..+--+.....|+.
T Consensus       277 A~~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          277 SRTVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHHhccChHHHHHHHH
Confidence            9999999875433333344443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.48  E-value=0.0021  Score=45.25  Aligned_cols=65  Identities=11%  Similarity=-0.022  Sum_probs=55.5

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .+...|..+-..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++...
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456788889999999999999999999877752 23678888899999999999999999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.45  E-value=0.0019  Score=43.62  Aligned_cols=103  Identities=13%  Similarity=0.013  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC-CCCCccHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN-PQMVLDFNLLAVLL  139 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l~  139 (250)
                      ..++..|-..|.+.|++++|.+.|++..+.. +-+...|+.+-.+|.+.|++++|.+.+++.... +...++...     
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----   81 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL-----   81 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH-----
Confidence            4677888899999999999999999877642 235678889999999999999999999887542 001000000     


Q ss_pred             HHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          140 YMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                                                                 -..+|..+-.++...|++++|.+.|++...
T Consensus        82 -------------------------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           82 -------------------------------------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                                                       013466677788889999999999988765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.45  E-value=0.00091  Score=52.13  Aligned_cols=110  Identities=9%  Similarity=-0.090  Sum_probs=76.3

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-cccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHH-HHHhhcCChh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMM-ILNYLTGNRE   78 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li-~~~~~~g~~~   78 (250)
                      ..+.+.|++++|...|+......|+. ..+.           .++|...+++....  .|+........ ..+.+.++.+
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence            45667899999999999887774443 2222           78888888887664  34443333222 2366777778


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .|.+.+++.... -+.+...+..+-..+...|++++|...|+++..
T Consensus       203 ~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          203 PEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            888888776654 233567778888888888888888888888754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.44  E-value=0.0021  Score=53.73  Aligned_cols=140  Identities=7%  Similarity=-0.098  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----------------chhHhhhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----------------QFTLGIRPSA  105 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----------------~~ty~~li~~  105 (250)
                      .++|.+.|+...+.. +-....|..+-..|.+.|++++|...|++..+.  .|+                ...|..+-.+
T Consensus       250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            445555554332221 123567888889999999999999999987763  233                4788889999


Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChh
Q 037164          106 YAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNK  185 (250)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (250)
                      |.+.|++++|...+++....   .|+                                                   +..
T Consensus       327 ~~~~g~~~~A~~~~~~al~~---~p~---------------------------------------------------~~~  352 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGL---DSA---------------------------------------------------NEK  352 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---STT---------------------------------------------------CHH
T ss_pred             HHHhcCHHHHHHHHHHHHhc---CCc---------------------------------------------------cHH
Confidence            99999999999999887643   111                                                   122


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQ  239 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  239 (250)
                      .|..+-.+|...|++++|...|++.... .+-+...+..+-..+.+.|+.+++.
T Consensus       353 a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          353 GLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666665532 2234455555666666666555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.37  E-value=0.011  Score=47.34  Aligned_cols=198  Identities=12%  Similarity=-0.046  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhc-C-ChhHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAA-S-DIHGMDKII  119 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~-~-~~~~a~~~~  119 (250)
                      ++|+++++++...+ +-+..+||.--.++...| ++++++++++.+...+ +-+..+|+.--..+.+. + +++++++++
T Consensus        71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            45666666666543 334455666656666666 4777777777766542 22555666655555554 5 667777777


Q ss_pred             HHHhhCCCCCccHHHHHHH---------H--------HHHHHHHHHHHhhhhccCCchhhhc-------ch-------hH
Q 037164          120 NMTESNPQMVLDFNLLAVL---------L--------YMAMTMLKKSEGLIATKRNSSNAFE-------LK-------DQ  168 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l---------~--------~~a~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~  168 (250)
                      +.+...  -+-+...|+.-         .        .++++.+.++.... |... + +|+       +.       ..
T Consensus       149 ~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~-S-AW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          149 HGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNN-S-AWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhccccccchHH
Confidence            766543  22334444333         1        24555555554332 2222 1 333       11       12


Q ss_pred             HHHHHHHHhccC---CCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----CCCCCc
Q 037164          169 LYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDV--------------------KGAEKTLRNWTSKN-----LPYDFG  220 (250)
Q Consensus       169 ~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~~~~~  220 (250)
                      +++.++..+...   +-+...|+.+-..+.+.|+.                    .....+...+...+     ..++..
T Consensus       224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  303 (349)
T 3q7a_A          224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL  303 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence            455566554432   24447777666666665543                    22333333332221     135667


Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          221 LPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       221 ~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ....|.+.|...|+.++|.++++.+.+
T Consensus       304 al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          304 ALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            788999999999999999999998864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.37  E-value=0.016  Score=45.00  Aligned_cols=63  Identities=10%  Similarity=-0.031  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSK-NLPYD-----FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+|+.+-..|...|++++|...|++.... ...|+     +.+++.+...|.+.|++++|..++++.++
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            47888899999999999999999997621 11222     25888999999999999999999998764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.35  E-value=0.0039  Score=42.46  Aligned_cols=98  Identities=11%  Similarity=-0.110  Sum_probs=73.1

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL  134 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~  134 (250)
                      .+...+..+...+.+.|++++|.++|++..+.  .|+    ...|..+..+|...|++++|.+.+++....   .|    
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~----   96 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DG----   96 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TS----
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---Cc----
Confidence            45677888888888999999999999977653  465    577788888888899998888888876542   01    


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          135 LAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       135 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                                                                     .+...|..+-.++...|++++|...|++...
T Consensus        97 -----------------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           97 -----------------------------------------------GDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             -----------------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                                           1123455666777888888888888888764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.32  E-value=0.0027  Score=43.29  Aligned_cols=80  Identities=14%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHHCCCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~  117 (250)
                      .++|...|++..+.  .|+    ...|..+..+|...|++++|...++...+.. +.+...|..+..++...|++++|.+
T Consensus        44 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A           44 YGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVL  120 (148)
T ss_dssp             HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            56666666666654  354    6788889999999999999999999877652 2356788888999999999999999


Q ss_pred             HHHHHhh
Q 037164          118 IINMTES  124 (250)
Q Consensus       118 ~~~~m~~  124 (250)
                      .|++...
T Consensus       121 ~~~~al~  127 (148)
T 2dba_A          121 DLQRCVS  127 (148)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.31  E-value=0.0053  Score=41.36  Aligned_cols=92  Identities=8%  Similarity=-0.159  Sum_probs=71.7

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHH
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAV  137 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~  137 (250)
                      +.+...|..+-..+...|++++|...|....+.. +.+...|..+..++...|++++|...+++....  .+.+...+..
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~   82 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF   82 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHH
Confidence            3567889999999999999999999999877753 335788999999999999999999999998653  1223334433


Q ss_pred             H---------HHHHHHHHHHHHhh
Q 037164          138 L---------LYMAMTMLKKSEGL  152 (250)
Q Consensus       138 l---------~~~a~~~~~~~~~~  152 (250)
                      +         +++|...|.+....
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3         77888888777643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0043  Score=41.38  Aligned_cols=89  Identities=10%  Similarity=-0.077  Sum_probs=68.3

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH-
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL-  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l-  138 (250)
                      +...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.+++....  -+.+...+..+ 
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg   79 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence            35678888889999999999999999877752 336788999999999999999999999998653  12223333333 


Q ss_pred             --------HHHHHHHHHHHHh
Q 037164          139 --------LYMAMTMLKKSEG  151 (250)
Q Consensus       139 --------~~~a~~~~~~~~~  151 (250)
                              .++|...|++...
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHH
Confidence                    7777777777663

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.28  E-value=0.00044  Score=50.50  Aligned_cols=81  Identities=9%  Similarity=-0.123  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHCCCCcc----------------HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARR----------------TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSA  105 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~----------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~  105 (250)
                      .++|...|++..+.. +.+                ..+|..+-.+|.+.|++++|...++...+. -+.+...|..+-.+
T Consensus        54 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~  131 (198)
T 2fbn_A           54 INEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVA  131 (198)
T ss_dssp             HHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence            677777777776642 112                278889999999999999999999988775 23466788888999


Q ss_pred             HHhcCChhHHHHHHHHHhh
Q 037164          106 YAAASDIHGMDKIINMTES  124 (250)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~  124 (250)
                      |...|++++|.+.|++...
T Consensus       132 ~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          132 NMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHH
Confidence            9999999999999998864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.28  E-value=0.00061  Score=57.27  Aligned_cols=106  Identities=11%  Similarity=0.014  Sum_probs=77.6

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      ..+.+.|++++|.+.|++..+..|+ ...|.           .++|++.|++..+.. +.+..+|..+-.+|.+.|++++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            3566789999999999988777444 33333           899999999998873 4567888999999999999999


Q ss_pred             HHHHHHHHHhcCCCC-CchhHhhhHHH--HHhcCChhHHHHHHH
Q 037164           80 IDALMLEMEEKSING-DQFTLGIRPSA--YAAASDIHGMDKIIN  120 (250)
Q Consensus        80 a~~~~~~m~~~gi~p-~~~ty~~li~~--~~~~~~~~~a~~~~~  120 (250)
                      |.+.+++..+.  .| +...+..+-.+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999987764  23 33455555555  888899999999888

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.26  E-value=0.0011  Score=55.69  Aligned_cols=52  Identities=13%  Similarity=-0.044  Sum_probs=28.0

Q ss_pred             HHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           70 LNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .+.+.|++++|.+.+++..+.  .| +..+|..+-.+|.+.|++++|.+.+++..
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344555566666665554443  22 34555555556666666666655555554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.25  E-value=0.017  Score=40.37  Aligned_cols=105  Identities=13%  Similarity=0.084  Sum_probs=72.6

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS   91 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g   91 (250)
                      .+.+.|++++|.+.|.......+...... .....  +.++.    +.+...|..+..+|.+.|++++|...++...+.+
T Consensus        20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE--WVELD----RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            56677888888887776654411100000 00000  00111    1245789999999999999999999999887753


Q ss_pred             CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                       +.+...|..+-.+|...|++++|.+.|++...
T Consensus        94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence             33567888899999999999999999998864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.22  E-value=0.0017  Score=44.76  Aligned_cols=111  Identities=12%  Similarity=-0.012  Sum_probs=55.1

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc-------ccc-----------hhHHHHHHHHHHHC----CCCc-cHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL-------FFG-----------VGKAEMVVQEMKDM----GFAR-RTIYCYIMM   68 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~-------~y~-----------~~~A~~~~~~m~~~----~~~p-~~~~y~~li   68 (250)
                      ..+...|++++|.+.|.+.....+...       .+.           .++|...|++..+.    +-.+ ...++..+.
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~   96 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG   96 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            356677888888888887665421111       111           45555555554331    1001 133455555


Q ss_pred             HHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           69 ILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      .+|...|++++|.+.+++..+.    +-.+ ...++..+...|...|++++|.+.+++.
T Consensus        97 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           97 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5555566666665555554321    1111 1233444555555556666665555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.18  E-value=0.001  Score=56.06  Aligned_cols=131  Identities=8%  Similarity=-0.033  Sum_probs=86.0

Q ss_pred             HHhhcCChhhHHHHHHHHHhc---CCCCC----chhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHH
Q 037164           70 LNYLTGNREKIDALMLEMEEK---SINGD----QFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMA  142 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~~---gi~p~----~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a  142 (250)
                      .+...|++++|..++++..+.   -+-|+    ..+++.|...|...|++++|..++++....                 
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------------  380 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG-----------------  380 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence            356789999999999876442   22232    357899999999999999999998876542                 


Q ss_pred             HHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-
Q 037164          143 MTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS-----KNL-  215 (250)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-  215 (250)
                         +.+   ...++-                        |++ .+++.|-..|...|++++|+.++++...     .|. 
T Consensus       381 ---~~~---~lG~~H------------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          381 ---YMK---LYHHNN------------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             ---HHH---HSCTTC------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ---HHH---HcCCCC------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence               111   000011                        233 6677777888888888888887777431     121 


Q ss_pred             CC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          216 PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       216 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .| ...+.+.|-.++...|.+++|+.++.++.+
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 233445566667777778888888877765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.12  E-value=0.02  Score=38.97  Aligned_cols=137  Identities=13%  Similarity=0.022  Sum_probs=91.9

Q ss_pred             HhcCChhHHHHHHHHHhhCCC-CCccHHHHHHH-HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh
Q 037164          107 AAASDIHGMDKIINMTESNPQ-MVLDFNLLAVL-LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN  184 (250)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~~~g-~~~~~~~~~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (250)
                      .-.|.+++..+++.+...+.. -+-+|+.++.+ .-...-+++-++.-....+.     ..++++.++.+.+-... .+.
T Consensus        18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi-----s~C~NlKrVi~C~~~~n-~~s   91 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL-----DKCQNLKSVVECGVINN-TLN   91 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-----GGCSCTHHHHHHHHHTT-CCC
T ss_pred             HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-----HhhhcHHHHHHHHHHhc-chH
Confidence            345667777777776643312 23466666666 11122222332222211111     15667777777765554 345


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      ......++.+...|+-|+-.+++..+. .+.+|++...-.+-.||.+-|+..+|.+++.++=++|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l-~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREIL-KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHh-ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            567888899999999999999999865 35677888888999999999999999999999988885

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.12  E-value=0.042  Score=46.30  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .+..+|+++... ++-+...|-..+.-+.+.|++++|..++++....  +.+...|.    .|+...+.+++   ++.+.
T Consensus       197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~  266 (493)
T 2uy1_A          197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLK  266 (493)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHH
Confidence            356788888765 4556778888888888999999999999998877  33333332    33333222222   33322


Q ss_pred             hCC---C-----C-Ccc-----HHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-------chh-HHHHHHHH
Q 037164          124 SNP---Q-----M-VLD-----FNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKD-QLYRIWKH  175 (250)
Q Consensus       124 ~~~---g-----~-~~~-----~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~  175 (250)
                      ...   .     . .+.     +..|...      .+.|..+|.+. . . |..... .|.       ..+ +.+++..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~-~~~~~~-v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N-EGVGPH-VFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T-SCCCHH-HHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C-CCCChH-HHHHHHHHHHHHCCChHHHHHH
Confidence            110   0     1 111     1122222      67788888887 2 1 221111 232       122 24444444


Q ss_pred             Hhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          176 YGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       176 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++..   .+.+...|...+.-..+.|+.+.|..+|+...     .....|...++-=...|+.+.+..+++++.+
T Consensus       343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4332   33334556777888888999999999999873     2467788888877888999999999988764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.09  E-value=0.0044  Score=42.49  Aligned_cols=82  Identities=12%  Similarity=0.017  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ..++..++...++..   .+.+...|..+-.+|.+.|++++|...|++..... +.+...+..+-.+|...|++++|...
T Consensus        30 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  108 (142)
T 2xcb_A           30 QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESG  108 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444444443   23445777888889999999999999999988543 44677888899999999999999999


Q ss_pred             HHHHHh
Q 037164          242 INHAET  247 (250)
Q Consensus       242 ~~~m~~  247 (250)
                      |++..+
T Consensus       109 ~~~al~  114 (142)
T 2xcb_A          109 FYSARA  114 (142)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.09  E-value=0.0039  Score=40.01  Aligned_cols=66  Identities=12%  Similarity=-0.033  Sum_probs=56.2

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +-+...+..+-.+|.+.|++++|.+.|+...+.+ +.+...|..+-.+|.+.|++++|.+.+++...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3467789999999999999999999999987753 23567889999999999999999999998754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.0061  Score=41.77  Aligned_cols=108  Identities=10%  Similarity=-0.098  Sum_probs=79.2

Q ss_pred             hhccChhHHHHHHHHhhhh-hcccc---ccc----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHH
Q 037164           15 FEVHGVEQAEIYFDNISKL-LRQCL---FFG----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDA   82 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~-~~~~~---~y~----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~   82 (250)
                      .-.+++++|.++|+...+. .+...   .|.    +++|.+.|++..+.|   +...++.|-..|..    .+++++|.+
T Consensus         6 g~~~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            6 TVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3446778888888877655 22221   111    677889998888875   56788888888877    788899999


Q ss_pred             HHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCCC
Q 037164           83 LMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQMV  129 (250)
Q Consensus        83 ~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~~  129 (250)
                      +|+.--+.|   +...+..|-..|..    .+|+++|.++|++.... |..
T Consensus        83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~  129 (138)
T 1klx_A           83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL-GSE  129 (138)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC-CCH
Confidence            998877764   46677777778877    78889999998888766 543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.06  E-value=0.0025  Score=40.90  Aligned_cols=64  Identities=13%  Similarity=-0.036  Sum_probs=55.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          183 FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       183 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +...+..+-..|.+.|++++|...|++..... +.+...|..+-.+|...|++++|...+++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44678888899999999999999999988543 34677899999999999999999999998764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.00  E-value=0.0031  Score=42.02  Aligned_cols=63  Identities=17%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..+..+-.++.+.|++++|...|++..... +.+   ...+..+..+|...|++++|...|+++.+.
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467777788999999999999999987543 222   455778888999999999999999988753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.99  E-value=0.058  Score=43.17  Aligned_cols=194  Identities=10%  Similarity=-0.052  Sum_probs=120.1

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcc-ccccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc-C-Ch
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQ-CLFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT-G-NR   77 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~-g-~~   77 (250)
                      ...+...-++|.++++.+....|+ ...|+            +++++++++.+...+ +-+..+|+.--.++.+. + ++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence            334455557899999988776333 23333            688999999998874 56778888887777776 6 88


Q ss_pred             hhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChh--------HHHHHHHHHhhCCCCCccHHHHHHH-----------
Q 037164           78 EKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIH--------GMDKIINMTESNPQMVLDFNLLAVL-----------  138 (250)
Q Consensus        78 ~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~--------~a~~~~~~m~~~~g~~~~~~~~~~l-----------  138 (250)
                      ++++++++.+.+..- -|...|+.---...+.+.++        ++.+.++++...  -+-+...|+..           
T Consensus       142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence            899999998876532 36677776655555555555        788888877653  22344444443           


Q ss_pred             -----HHHHHHHHHHHHhhhhccCCchhhhc-------c--hh------------------HHHHHHHHHhccC------
Q 037164          139 -----LYMAMTMLKKSEGLIATKRNSSNAFE-------L--KD------------------QLYRIWKHYGQTR------  180 (250)
Q Consensus       139 -----~~~a~~~~~~~~~~~~~~~~~~~~~~-------~--~~------------------~~~~~~~~~~~~~------  180 (250)
                           ++++++.+.++.... |.+. + .|.       +  .+                  ....+.+......      
T Consensus       219 ~~~~~~~eELe~~~~aI~~~-P~n~-S-aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLI-PHNV-S-AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE  295 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-TTCH-H-HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred             cchHHHHHHHHHHHHHHHhC-CCCH-H-HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence                 245555555544322 2332 1 333       1  00                  1223333332221      


Q ss_pred             ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          181 ---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       181 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                         .++......+.+.|...|+.++|.++++.+..+
T Consensus       296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence               245566778889999999999999999998744

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.98  E-value=0.0017  Score=50.41  Aligned_cols=114  Identities=4%  Similarity=-0.155  Sum_probs=78.5

Q ss_pred             hhhHhhhccChhHHHHHHHHhhhhhccc-cccc----------hhHHHHHHHHHHHCCCCcc--HHHHHHHHHHHhhcCC
Q 037164           10 RLNLIFEVHGVEQAEIYFDNISKLLRQC-LFFG----------VGKAEMVVQEMKDMGFARR--TIYCYIMMILNYLTGN   76 (250)
Q Consensus        10 ~l~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~----------~~~A~~~~~~m~~~~~~p~--~~~y~~li~~~~~~g~   76 (250)
                      .-.++...|++++|.++|+.+....|+. ..|.          .++|+..|+...... .|.  ...+..+-.++.+.|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence            3456888999999999999887653332 3333          788888887554321 111  2366777778888888


Q ss_pred             hhhHHHHHHHHHhcCCCCC--chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           77 REKIDALMLEMEEKSINGD--QFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~--~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +++|++.|++.......|.  .......-.++.+.|+.++|..+|+++..
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8888888887765443354  23455666788888888888888888865

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0044  Score=49.48  Aligned_cols=62  Identities=6%  Similarity=-0.122  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ..|+.+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|.+.|++...
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            388899999999999999999999877652 23667899999999999999999999998864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0041  Score=49.69  Aligned_cols=130  Identities=11%  Similarity=-0.045  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCch------------------hHhhhHHHHHhcCChhHHHHHHHHH
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQF------------------TLGIRPSAYAAASDIHGMDKIINMT  122 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~------------------ty~~li~~~~~~~~~~~a~~~~~~m  122 (250)
                      ...+..+-..+.+.|++++|...|++....  .|+..                  .|..+-.+|.+.|++++|...+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455777778888899999999988876553  34443                  6667777777777777777777766


Q ss_pred             hhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH
Q 037164          123 ESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKG  202 (250)
Q Consensus       123 ~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  202 (250)
                      ...   .|                                                   .+...|..+-.+|...|++++
T Consensus       257 l~~---~p---------------------------------------------------~~~~a~~~lg~a~~~~g~~~~  282 (338)
T 2if4_A          257 LTE---EE---------------------------------------------------KNPKALFRRGKAKAELGQMDS  282 (338)
T ss_dssp             HHH---CT---------------------------------------------------TCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHh---CC---------------------------------------------------CCHHHHHHHHHHHHHcCCHHH
Confidence            432   01                                                   123446666777788888888


Q ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHH-HHhcCChhHHHHHHHHHHh
Q 037164          203 AEKTLRNWTSKNLPYDFGLPSSLIDA-HCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       203 A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~  247 (250)
                      |...|++.... .+-+...+..|... ....+..+.+..+|.+|..
T Consensus       283 A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          283 ARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             HHHHHHHTTC------------------------------------
T ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            88888776532 12234445545444 2334566677777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.94  E-value=0.0045  Score=40.56  Aligned_cols=65  Identities=12%  Similarity=-0.143  Sum_probs=55.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+...+..+-..|...|++++|...|++..... +.+...|..+-..|...|++++|...|++..+
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445778888899999999999999999988543 34567888999999999999999999998765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.94  E-value=0.0043  Score=51.77  Aligned_cols=104  Identities=10%  Similarity=-0.063  Sum_probs=70.7

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI   92 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi   92 (250)
                      .+.+.|++++|...|+......|+...+.-+...    +...    -....|+.+-.+|.+.|++++|...++...+.. 
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~----~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  347 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK----ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-  347 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH----HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHH----HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            4555666666666666655543332211111110    0000    115788899999999999999999999887753 


Q ss_pred             CCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      +.+...|..+-.+|...|++++|...|++....
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            336778888899999999999999999998753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.92  E-value=0.15  Score=42.95  Aligned_cols=190  Identities=7%  Similarity=-0.059  Sum_probs=114.7

Q ss_pred             hcc-ChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHHHHHHhc-CC
Q 037164           16 EVH-GVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALMLEMEEK-SI   92 (250)
Q Consensus        16 k~~-~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~-gi   92 (250)
                      +.| +++.|..+|+......|.   =+.+.|..+|++....  .|++..|..-+.-..+.++ .+.+..+|+..... |.
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~---~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~   80 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMS---KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN   80 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT
T ss_pred             HcCcchHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC
Confidence            456 489999999998887665   2389999999999874  4799999998888777763 46778888876653 54


Q ss_pred             CC-CchhHhhhHHHHH----hcCChhHHHHHHHHHhhCCCCCccHHHHHHH----------------------HHHHHHH
Q 037164           93 NG-DQFTLGIRPSAYA----AASDIHGMDKIINMTESNPQMVLDFNLLAVL----------------------LYMAMTM  145 (250)
Q Consensus        93 ~p-~~~ty~~li~~~~----~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l----------------------~~~a~~~  145 (250)
                      .| +...|...+..+.    ..++++.+.++|++....| ...-..+|...                      +..|..+
T Consensus        81 d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~  159 (493)
T 2uy1_A           81 YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQR  159 (493)
T ss_dssp             CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHH
Confidence            44 5677777776554    3467889999999987652 22112222211                      1122333


Q ss_pred             HHHHHhhhhccCCchhhhc--------c---------hhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037164          146 LKKSEGLIATKRNSSNAFE--------L---------KDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLR  208 (250)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  208 (250)
                      +.+........+. . .|.        .         ...+..+++..-...+.+...|...+.-+.+.|+++.|..+|+
T Consensus       160 y~~~~~~~~~~s~-~-~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~e  237 (493)
T 2uy1_A          160 YQQIQPLIRGWSV-K-NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVE  237 (493)
T ss_dssp             HHHHHHHHHTCSH-H-HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccH-H-HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3333221111000 0 111        0         1122233333222334556778888888888999999999999


Q ss_pred             HHHhC
Q 037164          209 NWTSK  213 (250)
Q Consensus       209 ~m~~~  213 (250)
                      +....
T Consensus       238 rAi~~  242 (493)
T 2uy1_A          238 RGIEM  242 (493)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            98866

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.84  E-value=0.0078  Score=48.76  Aligned_cols=125  Identities=10%  Similarity=-0.083  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhc--------------CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEK--------------SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--------------gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ...+..+-..|.+.|++++|.+.+++..+.              ...| +..+|..+-.+|.+.|++++|.+.+++....
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            345788888999999999999999987651              0222 4567888888899999999999888887653


Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037164          126 PQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEK  205 (250)
Q Consensus       126 ~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  205 (250)
                         .|+                                                   +...|..+-.+|.+.|++++|..
T Consensus       303 ---~p~---------------------------------------------------~~~a~~~lg~~~~~~g~~~eA~~  328 (370)
T 1ihg_A          303 ---DPS---------------------------------------------------NTKALYRRAQGWQGLKEYDQALA  328 (370)
T ss_dssp             ---CTT---------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---Cch---------------------------------------------------hHHHHHHHHHHHHHccCHHHHHH
Confidence               111                                                   23345667778888899999999


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHH
Q 037164          206 TLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQS  240 (250)
Q Consensus       206 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  240 (250)
                      .|++..... +.+...+..+-..+...++.+++.+
T Consensus       329 ~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          329 DLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            998877542 2355667777777777777766654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.80  E-value=0.0016  Score=43.54  Aligned_cols=83  Identities=10%  Similarity=-0.042  Sum_probs=64.6

Q ss_pred             chhHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ..++..++...++...   +.+...|..+-.++...|+.++|+..|++..... +-+...+..+..+|.+.|++++|...
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~  107 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS  107 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4555666666665542   2345778888899999999999999999987542 33567888999999999999999999


Q ss_pred             HHHHHhc
Q 037164          242 INHAETK  248 (250)
Q Consensus       242 ~~~m~~~  248 (250)
                      +++.++.
T Consensus       108 ~~~al~~  114 (121)
T 1hxi_A          108 LRAWLLS  114 (121)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            9998753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0075  Score=38.82  Aligned_cols=66  Identities=3%  Similarity=-0.187  Sum_probs=56.0

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ++...+..+-..+.+.|++++|.+.|++..+. -+.+...|..+-.++.+.|++++|.+.+++....
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45678888999999999999999999987765 2336678888999999999999999999998753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.63  E-value=0.0045  Score=40.81  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...|..+-..|.+.|++++|...|++..... +-+..++..+..+|.+.|++++|...+++.++.
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3667788888999999999999999987543 335777888888999999999999999887653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.63  E-value=0.011  Score=47.80  Aligned_cols=63  Identities=8%  Similarity=-0.040  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +..+|+.+-.+|.+.|++++|.+.+++..+.  .| +...|..+-.+|.+.|++++|.+.|++...
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4678899999999999999999999987764  34 567888888999999999999999999865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.62  E-value=0.019  Score=35.35  Aligned_cols=65  Identities=11%  Similarity=-0.038  Sum_probs=54.8

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      +...+..+-..|.+.|++++|...+++..+.. +.+...|..+-.++.+.|++++|.+.+++....
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45778888899999999999999999877652 235678888899999999999999999987653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0055  Score=39.49  Aligned_cols=60  Identities=15%  Similarity=-0.049  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .|..+-..+.+.|++++|...|++.... .+.+...|..+-.+|.+.|++++|...+++.+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444445555555555555555555432 22234445555555555555555555555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.60  E-value=0.025  Score=39.78  Aligned_cols=101  Identities=6%  Similarity=-0.218  Sum_probs=72.2

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK--   90 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--   90 (250)
                      .+.+.|++++|...|+......|+...  . ++...        .+.+...|+.+-.++.+.|++++|+..++.-.+.  
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~--~-~a~~~--------~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTMPP--E-EAFDH--------AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCT--T-SCCCH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCCcc--h-hhhhh--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            466778888888888877766444111  0 00000        0012348999999999999999999999987663  


Q ss_pred             ---CCCCCc-hhH----hhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           91 ---SINGDQ-FTL----GIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        91 ---gi~p~~-~ty----~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                         -+.|+. ..|    ...-.++...|++++|...|++...
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence               226654 577    8888999999999999999998743

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.54  E-value=0.019  Score=40.08  Aligned_cols=63  Identities=16%  Similarity=0.030  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ...|..+-.+|.+.|++++|...+++.... .+.+...|..+-.+|...|++++|...|++.++
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            356677777788888888888888877653 234566777777888888888888888877654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.53  E-value=0.0075  Score=37.23  Aligned_cols=64  Identities=16%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...+..+-..+.+.|++++|...|++..... +.+..++..+-..|.+.|++++|...+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3566777788899999999999999987542 345677888889999999999999999887653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.38  E-value=0.089  Score=35.79  Aligned_cols=100  Identities=11%  Similarity=0.005  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~  117 (250)
                      .++|...|++..+.|. |+  .+  |-..|...+.+++|.++|+.-.+.|   +...+..|-..|..    .+|+++|.+
T Consensus        11 ~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           11 LKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            6789999999999872 33  33  7777888888999999999887764   57788888888888    899999999


Q ss_pred             HHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHH
Q 037164          118 IINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSE  150 (250)
Q Consensus       118 ~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~  150 (250)
                      +|++.... |..........+          .++|...|++..
T Consensus        83 ~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           83 YYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            99999877 664444443333          566666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.38  E-value=0.026  Score=47.54  Aligned_cols=114  Identities=10%  Similarity=-0.012  Sum_probs=73.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc-chhHHHHHHHHHhccCC---CCh-hhHHHHHHHHHhcCCHHHH
Q 037164          129 VLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE-LKDQLYRIWKHYGQTRK---VFN-KGYMTMMGLLLKLDDVKGA  203 (250)
Q Consensus       129 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A  203 (250)
                      .|+..+...++..+...++++........     |. -..-.+++++..+....   |+. .+++.|...|...|++++|
T Consensus       296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~-----~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA  370 (490)
T 3n71_A          296 KPSQEVVKEMIQFSKDTLEKIDKARSEGL-----YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEA  370 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34555555555555555555543221111     11 12223344444444322   444 8899999999999999999


Q ss_pred             HHHHHHHHh---CCC---CC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          204 EKTLRNWTS---KNL---PY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       204 ~~~~~~m~~---~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +.++++...   +-.   .| ...+++.|-..|...|++++|+.++++.++
T Consensus       371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999998542   112   22 355689999999999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.16  E-value=0.018  Score=40.50  Aligned_cols=103  Identities=5%  Similarity=-0.175  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh----------hhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhc-
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR----------EKIDALMLEMEEKSING-DQFTLGIRPSAYAAA-  109 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~-  109 (250)
                      +++|...+++..+.+ +.+...|+.+-.++.+.+++          ++|+..|++..+.  .| +...|..+-.+|... 
T Consensus        18 feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           18 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhc
Confidence            455555555555442 34566666666666666554          4777777765553  44 345677777777665 


Q ss_pred             ----------CChhHHHHHHHHHhhCCCCCccHHHHHHH---HHHHHHHHHHHH
Q 037164          110 ----------SDIHGMDKIINMTESNPQMVLDFNLLAVL---LYMAMTMLKKSE  150 (250)
Q Consensus       110 ----------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---~~~a~~~~~~~~  150 (250)
                                |++++|.+.|++...   +.|+...|...   .++|-++.-+..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~~~ka~el~~~~~  145 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMTAKAPQLHAEAY  145 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHhCHhccCccc
Confidence                      378888888887763   34554444333   455555444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.11  E-value=0.008  Score=49.79  Aligned_cols=83  Identities=7%  Similarity=-0.062  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHC---CCCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----C-CCCCc-hhHhhhHHHHH
Q 037164           42 VGKAEMVVQEMKDM---GFARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK-----S-INGDQ-FTLGIRPSAYA  107 (250)
Q Consensus        42 ~~~A~~~~~~m~~~---~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-i~p~~-~ty~~li~~~~  107 (250)
                      .++|+.++++.++.   -+.|+    ..+++.|..+|...|++++|..++++...-     | -.|++ .+|+.|-..|.
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~  393 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM  393 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            67888888776542   12233    578999999999999999999999986532     2 22444 57899999999


Q ss_pred             hcCChhHHHHHHHHHhh
Q 037164          108 AASDIHGMDKIINMTES  124 (250)
Q Consensus       108 ~~~~~~~a~~~~~~m~~  124 (250)
                      ..|++++|+.++++...
T Consensus       394 ~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          394 GLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHH
Confidence            99999999999987654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.09  E-value=0.051  Score=44.95  Aligned_cols=79  Identities=14%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             HHHHHHHHhccCC---CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCCC-CcchHHHHHHHHhcCChhH
Q 037164          169 LYRIWKHYGQTRK---VFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTS---K--N-LPYD-FGLPSSLIDAHCKNGLLEK  237 (250)
Q Consensus       169 ~~~~~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~-~~~~-~~~~~~li~~~~~~g~~~~  237 (250)
                      .+++++..+....   |+. .+++.+...|...|++++|+.++++...   +  | ..|+ ..+++.|-..|...|++++
T Consensus       321 ~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~e  400 (433)
T 3qww_A          321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAA  400 (433)
T ss_dssp             HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHH
Confidence            3344444444322   444 8899999999999999999999998642   1  2 2333 4568999999999999999


Q ss_pred             HHHHHHHHHh
Q 037164          238 AQSLINHAET  247 (250)
Q Consensus       238 a~~~~~~m~~  247 (250)
                      |+.++++.++
T Consensus       401 A~~~~~~Al~  410 (433)
T 3qww_A          401 GEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.02  E-value=0.029  Score=46.36  Aligned_cols=83  Identities=7%  Similarity=-0.173  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHHCC---CCcc----HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----C-CCCCc-hhHhhhHHHHH
Q 037164           42 VGKAEMVVQEMKDMG---FARR----TIYCYIMMILNYLTGNREKIDALMLEMEEK-----S-INGDQ-FTLGIRPSAYA  107 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~---~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-i~p~~-~ty~~li~~~~  107 (250)
                      .++|+.++++.++..   +.|+    ..+++.|..+|...|++++|+.++++...-     | --|++ .+|+.|-..|.
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~  382 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL  382 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence            688888888887542   2333    578999999999999999999999976532     2 22333 57899999999


Q ss_pred             hcCChhHHHHHHHHHhh
Q 037164          108 AASDIHGMDKIINMTES  124 (250)
Q Consensus       108 ~~~~~~~a~~~~~~m~~  124 (250)
                      ..|++++|+.++++...
T Consensus       383 ~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          383 HQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHH
Confidence            99999999999887643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.87  E-value=0.14  Score=39.67  Aligned_cols=104  Identities=14%  Similarity=0.084  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHCCCCcc---HHHHHHHHHHHhhc-----CChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhc-C
Q 037164           42 VGKAEMVVQEMKDMGFARR---TIYCYIMMILNYLT-----GNREKIDALMLEMEEKSING--DQFTLGIRPSAYAAA-S  110 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~---~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~-~  110 (250)
                      +..|...+++..+.+  |+   -..|.+|...|.+.     |+.++|.+.|++-.+  +.|  +..++...-..+++. |
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence            788888999988864  55   56899999999995     999999999998766  456  377888888999985 9


Q ss_pred             ChhHHHHHHHHHhhCCCCC--ccHHHHHHH-HHHHHHHHHHHH
Q 037164          111 DIHGMDKIINMTESNPQMV--LDFNLLAVL-LYMAMTMLKKSE  150 (250)
Q Consensus       111 ~~~~a~~~~~~m~~~~g~~--~~~~~~~~l-~~~a~~~~~~~~  150 (250)
                      +.+.+.+.+++.... ...  |+....+.+ -.+|..++.+..
T Consensus       255 d~~~a~~~L~kAL~a-~p~~~P~~~lan~~~q~eA~~LL~~~~  296 (301)
T 3u64_A          255 NRAGFDEALDRALAI-DPESVPHNKLLVILSQKRARWLKAHVQ  296 (301)
T ss_dssp             CHHHHHHHHHHHHHC-CGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHcC-CCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence            999999999998776 444  787777776 666666666544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.85  E-value=0.049  Score=37.92  Aligned_cols=85  Identities=12%  Similarity=-0.111  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCC--CchhHhhhHHHHHhcCChhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG---NREKIDALMLEMEEKSING--DQFTLGIRPSAYAAASDIHGMD  116 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p--~~~ty~~li~~~~~~~~~~~a~  116 (250)
                      +..+.+.|++..+.|. ++..+-..+-.+++++.   +.+++..+|++..+.+ .|  +...+-.|--+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            6677788888777654 78888888888899988   6669999999988764 34  2344445667889999999999


Q ss_pred             HHHHHHhhCCCCCcc
Q 037164          117 KIINMTESNPQMVLD  131 (250)
Q Consensus       117 ~~~~~m~~~~g~~~~  131 (250)
                      +.++.+.+   +.|+
T Consensus        92 ~y~~~lL~---ieP~  103 (152)
T 1pc2_A           92 KYVRGLLQ---TEPQ  103 (152)
T ss_dssp             HHHHHHHH---HCTT
T ss_pred             HHHHHHHh---cCCC
Confidence            99999874   4554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.83  E-value=0.056  Score=37.95  Aligned_cols=90  Identities=9%  Similarity=-0.095  Sum_probs=69.4

Q ss_pred             HhhhccChhHHHHHHHHhhhhhc-cccccc---------------------hhHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLR-QCLFFG---------------------VGKAEMVVQEMKDMGFARRTIYCYIMMIL   70 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~-~~~~y~---------------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~   70 (250)
                      -..|.+.+++|.+.++......| +...|.                     +++|+..|++..+.+ +-+..+|+.+-.+
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            45677889999999998877744 444444                     359999999998864 3467899999999


Q ss_pred             HhhcC-----------ChhhHHHHHHHHHhcCCCCCchhHhhhHHH
Q 037164           71 NYLTG-----------NREKIDALMLEMEEKSINGDQFTLGIRPSA  105 (250)
Q Consensus        71 ~~~~g-----------~~~~a~~~~~~m~~~gi~p~~~ty~~li~~  105 (250)
                      |...|           ++++|.+.|++..+  +.|+...|..-+..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            98875           89999999997665  57888777555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.79  E-value=0.068  Score=33.49  Aligned_cols=57  Identities=11%  Similarity=-0.051  Sum_probs=44.9

Q ss_pred             HHHHHhhcCChhhHHHHHHHHHhcCCCC-Cch-hHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           67 MMILNYLTGNREKIDALMLEMEEKSING-DQF-TLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        67 li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ....+.+.|++++|.+.++...+.  .| +.. .|..+-.+|...|++++|.+.|++....
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345677889999999999987765  34 446 7888888999999999999999987653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.64  E-value=0.018  Score=40.49  Aligned_cols=62  Identities=15%  Similarity=-0.113  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CCcch----HHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSK-----NLPY-DFGLP----SSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .|+.+-.++.+.|++++|+..+++....     .+.| +...|    ...-.++...|++++|...|++.++
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            8899999999999999999999998753     1144 45677    8888999999999999999998865

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.54  E-value=0.043  Score=45.36  Aligned_cols=63  Identities=11%  Similarity=-0.130  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTS---K--N-LPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+++.+...|...|++++|+.++++...   +  | ..| ...+++.|-..|...|++++|..++++.++
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            7889999999999999999999998542   1  1 222 245688999999999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.49  E-value=0.03  Score=35.23  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~  211 (250)
                      .|..+-.+|.+.|++++|...|++..
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444445555555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.43  E-value=0.1  Score=33.37  Aligned_cols=72  Identities=7%  Similarity=0.022  Sum_probs=52.6

Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS  149 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~  149 (250)
                      |.=++.+-++.+-..++.|++....+.+++|.|.+|+..|.++|+-++..  +.+...+|..++++..-+++++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqElkPtl~EL   96 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQELRPTLNEL   96 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHHHhhHHHHh
Confidence            34467777777778888999999999999999999999999999888664  3333456666655555555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.42  E-value=0.76  Score=36.46  Aligned_cols=190  Identities=6%  Similarity=-0.135  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC--hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCC-hhHHHHHH
Q 037164           43 GKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN--REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASD-IHGMDKII  119 (250)
Q Consensus        43 ~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~-~~~a~~~~  119 (250)
                      ++++.+++.+...+ +.+..+|+---.++.+.|+  +++++.+++.+.+..- -|...|+.---.....|. ++++.+.+
T Consensus        91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            35666666666542 4466667666666666663  6677777777766532 255666666666666666 46777777


Q ss_pred             HHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhh-hccCCchhhhcchhHHHHHHHHHhccC---CCChhhHHHHHHHHH
Q 037164          120 NMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLI-ATKRNSSNAFELKDQLYRIWKHYGQTR---KVFNKGYMTMMGLLL  195 (250)
Q Consensus       120 ~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~  195 (250)
                      +.+...  -+-|...|+..    ..++..+.... .+.....    ..+.+++.++.+....   +-|...|+.+-..+.
T Consensus       169 ~~~I~~--~p~N~SAW~~R----~~ll~~l~~~~~~~~~~~~----~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          169 DSLITR--NFSNYSSWHYR----SCLLPQLHPQPDSGPQGRL----PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             HHHHHH--CSCCHHHHHHH----HHHHHHHSCCC------CC----CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHH--CCCCHHHHHHH----HHHHHHhhhcccccccccc----chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            766543  22344444333    11111111000 0000000    1244555555554442   233466665544444


Q ss_pred             hc-----------CCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH-----hcCChhHHHHHHHHHHh
Q 037164          196 KL-----------DDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHC-----KNGLLEKAQSLINHAET  247 (250)
Q Consensus       196 ~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~  247 (250)
                      +.           +.++++.+.++++..  ..||. .|+.+-.+..     ..|..+++...+.++++
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            44           457888888888875  34454 4543332222     35667778888887764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.37  E-value=0.79  Score=36.34  Aligned_cols=177  Identities=6%  Similarity=-0.078  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHhhhh-hccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC-hhhHHHHH
Q 037164           20 VEQAEIYFDNISKL-LRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN-REKIDALM   84 (250)
Q Consensus        20 ~~~a~~~f~~~~~~-~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~   84 (250)
                      ++++..+++.+... +.+..+|+             .++++++++++.+.+ +-|-.+|+---.+..+.|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            67889999988776 34444554             479999999999875 5688999988888888998 58999999


Q ss_pred             HHHHhcCCCCCchhHhhhHHHHHhc--------------CChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 037164           85 LEMEEKSINGDQFTLGIRPSAYAAA--------------SDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSE  150 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~~~~~--------------~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~  150 (250)
                      +.+.+.... |...|+..-..+.+.              +.++++.+.+++....  .+-|...|+.+        .-+.
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~--------r~ll  237 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH--------RWLL  237 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH--------HHHH
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH--------HHHH
Confidence            999887543 778887776666554              3467777777776542  33345555333        1111


Q ss_pred             -hhhhccCCchhhhcchhHHHHHHHHHhccCC--CChhhHHH--HH---HHHHhcCCHHHHHHHHHHHHh
Q 037164          151 -GLIATKRNSSNAFELKDQLYRIWKHYGQTRK--VFNKGYMT--MM---GLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~  212 (250)
                       ........   +-...+.+++..+.+.+...  |+. .|+.  ++   .+.-..|..+++...+.++..
T Consensus       238 ~~~~~~~~~---~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          238 GAGSGRCEL---SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HSSSCGGGC---CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HhccCcccc---chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence             00000000   00023444555555444432  444 3332  21   222245677788888888774

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.19  E-value=0.18  Score=40.55  Aligned_cols=64  Identities=6%  Similarity=-0.055  Sum_probs=40.4

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      +.+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.|++..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4455666666555555677777777777666654  565556555566666677777777766654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.00  E-value=0.096  Score=33.67  Aligned_cols=64  Identities=14%  Similarity=0.001  Sum_probs=48.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          184 NKGYMTMMGLLLKLDDVKGAEKTLRNWTSKN------LPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ...+..|-..+.+.|+++.|...|+.....-      -.+...++..|..+|.+.|+++.|..+++++.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3445677788888999999999998866421      123456688888899999999999998888764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.89  E-value=0.18  Score=32.33  Aligned_cols=66  Identities=9%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC------CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKS------INGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .+..-|-.|-..+.+.|+++.|...|++..+.-      -.+....|..|-.+|.+.|+++.|...+++...
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            456678888999999999999999999865531      124567888999999999999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.43  E-value=1  Score=38.58  Aligned_cols=82  Identities=2%  Similarity=-0.232  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC----------hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcC-
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN----------REKIDALMLEMEEKSINGDQFTLGIRPSAYAAAS-  110 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~-  110 (250)
                      -++|++.++++.+.+ +-+..+|+.--.++.+.|+          +++++++++.+.+.. +-+..+|+.---.+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            478899999998864 3456778777777777777          899999999988753 236678888777888888 


Q ss_pred             -ChhHHHHHHHHHhhC
Q 037164          111 -DIHGMDKIINMTESN  125 (250)
Q Consensus       111 -~~~~a~~~~~~m~~~  125 (250)
                       +++++.++++++.+.
T Consensus       123 ~~~~~el~~~~k~l~~  138 (567)
T 1dce_A          123 PNWARELELCARFLEA  138 (567)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhh
Confidence             668999998888653

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.25  E-value=0.28  Score=31.32  Aligned_cols=60  Identities=2%  Similarity=-0.119  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS  104 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~  104 (250)
                      +..+-++.+...++.|++.+..+.+.+|-|.+++..|.++|+-.+.. +.+...+|.-++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34445667777889999999999999999999999999999998876 4444556766654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=94.08  E-value=0.5  Score=31.94  Aligned_cols=71  Identities=7%  Similarity=0.012  Sum_probs=55.8

Q ss_pred             hhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164           77 REKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS  149 (250)
Q Consensus        77 ~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~  149 (250)
                      .=+..+-++.+-..++.|++.....-+++|-+.+|+..|.++|+-++.+  +.+...+|..++++..-.++++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqElkPtl~EL  139 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQELRPTLNEL  139 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHHHhhHHHHh
Confidence            3356677777778899999999999999999999999999999998764  4445566776766666666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.74  E-value=0.27  Score=30.95  Aligned_cols=63  Identities=13%  Similarity=-0.000  Sum_probs=34.3

Q ss_pred             hhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          185 KGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       185 ~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..+..+-.++...++   .++|..++++.... -+-++.....+-..+.+.|++++|...|+++.+.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344444444433333   46666666665532 2234455555556666666666666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.58  E-value=0.37  Score=41.31  Aligned_cols=103  Identities=4%  Similarity=-0.044  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHhhhh-hccccccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHH
Q 037164           20 VEQAEIYFDNISKL-LRQCLFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALM   84 (250)
Q Consensus        20 ~~~a~~~f~~~~~~-~~~~~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~   84 (250)
                      ++++.++++.+... +.+..+|.             .++|.+.++++.+.+ +-|..+|+---....+.| .++++.+.+
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~  167 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHH
Confidence            89999999998877 33444554             489999999999875 457899999888888999 899999999


Q ss_pred             HHHHhcCCCCCchhHhhhHHHHHhc--------------CChhHHHHHHHHHhh
Q 037164           85 LEMEEKSINGDQFTLGIRPSAYAAA--------------SDIHGMDKIINMTES  124 (250)
Q Consensus        85 ~~m~~~gi~p~~~ty~~li~~~~~~--------------~~~~~a~~~~~~m~~  124 (250)
                      +.+.+.+.. |...|+..-..+.+.              +.++++.+.+++...
T Consensus       168 ~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          168 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             HTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence            988776443 778888777666663              456788888887654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.55  E-value=0.77  Score=36.96  Aligned_cols=142  Identities=8%  Similarity=-0.123  Sum_probs=87.5

Q ss_pred             CCCCCchhHhhhHHHHHh--cC---ChhHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHHHHHHhhhhccCCchhhhc
Q 037164           91 SINGDQFTLGIRPSAYAA--AS---DIHGMDKIINMTESNPQMVLD-FNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFE  164 (250)
Q Consensus        91 gi~p~~~ty~~li~~~~~--~~---~~~~a~~~~~~m~~~~g~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~  164 (250)
                      +.+.|...|...+.+...  .+   +..+|..+|++..+   ..|+ ...+..+   +...+  ......+... .    
T Consensus       189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~l---a~a~~--~~~~~~~~~~-~----  255 (372)
T 3ly7_A          189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEK---ALVDI--VRHSQHPLDE-K----  255 (372)
T ss_dssp             HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHH---HHHHH--HHHHHSCCCH-H----
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHH---HHHHH--HHhccCCCch-h----
Confidence            356678888888866543  23   35788999998764   3344 2333222   11111  1111111111 0    


Q ss_pred             chhHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHH
Q 037164          165 LKDQLYRIWKHYGQT--RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLI  242 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  242 (250)
                      ....+.++.+.....  .+.+...|.++-..+...|+++.|...+++....+  |+...|..+-..+.-.|++++|.+.+
T Consensus       256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            122233333322222  23555778777777777899999999999998765  67666777778888999999999999


Q ss_pred             HHHHh
Q 037164          243 NHAET  247 (250)
Q Consensus       243 ~~m~~  247 (250)
                      ++..+
T Consensus       334 ~~Alr  338 (372)
T 3ly7_A          334 LTAFN  338 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.45  E-value=0.83  Score=31.16  Aligned_cols=110  Identities=10%  Similarity=0.016  Sum_probs=72.6

Q ss_pred             ccChhHHHHHHHHhhhhhccccccc--------hhHHHHHHHHHHHCCCCcc--------------------HHHHHHHH
Q 037164           17 VHGVEQAEIYFDNISKLLRQCLFFG--------VGKAEMVVQEMKDMGFARR--------------------TIYCYIMM   68 (250)
Q Consensus        17 ~~~~~~a~~~f~~~~~~~~~~~~y~--------~~~A~~~~~~m~~~~~~p~--------------------~~~y~~li   68 (250)
                      -|.+++..++..+.... .+..-||        ...+..+|+.+-.-|---|                    ..-.+.-+
T Consensus        20 dG~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~AL   98 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL   98 (172)
T ss_dssp             TTCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence            47778888888776654 3444555        3334444444443331112                    23345555


Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMV  129 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~  129 (250)
                      ......|+-+.-.++..++.. +.+|++...-.+-++|.+.|+..++.+++.+.... |++
T Consensus        99 d~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k  157 (172)
T 1wy6_A           99 DILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  157 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence            666667777777777777533 46678888888899999999999999999999888 875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.01  E-value=1.7  Score=30.92  Aligned_cols=50  Identities=16%  Similarity=0.015  Sum_probs=42.6

Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ......|+++.|.++.+++      .+...|..|-+...+.|+++-|+++|.....
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            3445789999999998876      3688999999999999999999999988764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.45  E-value=2.5  Score=34.22  Aligned_cols=72  Identities=7%  Similarity=-0.151  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHHH
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNLL  135 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~~  135 (250)
                      +...++.++...|+++++...+...... -+-+...|..+|.++.+.|+..+|.+.|+.....    -|+.|+..+-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            4566788889999999999998887654 3347789999999999999999999999986432    3899987763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.30  E-value=0.46  Score=32.98  Aligned_cols=65  Identities=14%  Similarity=0.027  Sum_probs=45.1

Q ss_pred             CChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKLD---DVKGAEKTLRNWTSKNLPY--DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++..+...+--++++.+   +++++..+|+...... .|  ....+-.|--+|.+.|++++|.++++.+++
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            55666666666777777   6668888888877654 22  234445566677888888888888888765

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=91.83  E-value=0.91  Score=30.72  Aligned_cols=60  Identities=2%  Similarity=-0.119  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS  104 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~  104 (250)
                      +..+-++.+...++.|++.+..+-+.+|-|.+|+..|.++|+-.+.+ +.+...+|.-++.
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            34444566677789999999999999999999999999999998876 4445666766654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.42  E-value=1.4  Score=29.43  Aligned_cols=81  Identities=14%  Similarity=-0.084  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh---HHHHHHHHHhcCCCC-Cch-hHhhhHHHHHhcCChhHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK---IDALMLEMEEKSING-DQF-TLGIRPSAYAAASDIHGMD  116 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~---a~~~~~~m~~~gi~p-~~~-ty~~li~~~~~~~~~~~a~  116 (250)
                      +..+.+.|++....|. |+..+--.+..++.++.+...   +..++.+....+ .| +.. ..-.|--++.+.|+++.|.
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            5566667776666554 677777777788888888776   888888877653 23 222 2233558999999999999


Q ss_pred             HHHHHHhh
Q 037164          117 KIINMTES  124 (250)
Q Consensus       117 ~~~~~m~~  124 (250)
                      +.++.+..
T Consensus        95 ~~~~~lL~  102 (126)
T 1nzn_A           95 KYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.27  E-value=3  Score=36.87  Aligned_cols=49  Identities=8%  Similarity=-0.006  Sum_probs=38.0

Q ss_pred             HHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           70 LNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .....|+++.|.++.+.+      .+...|..|-..+.+.++++.|.++|..+..
T Consensus       661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            345677888888776532      4678899999999999999999999988754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.75  E-value=1.5  Score=38.85  Aligned_cols=58  Identities=7%  Similarity=-0.081  Sum_probs=43.8

Q ss_pred             ccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           59 RRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        59 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      .+...|..|-..+.+.|+++.|.+.|..+..         |..+...|...++.+...++-+.....
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5678999999999999999999999997654         345555666677777666666555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.19  E-value=2.7  Score=26.14  Aligned_cols=66  Identities=6%  Similarity=-0.060  Sum_probs=49.9

Q ss_pred             CccHHHHHHHHHHHhhcCC---hhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           58 ARRTIYCYIMMILNYLTGN---REKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                      ++|+..+..+-.++...++   .++|..++++..+.  .|+. .....+-..+.+.|++++|...|+.+...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567777777777765554   68999999987663  5555 45555568999999999999999998754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.27  E-value=7.4  Score=34.54  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=72.1

Q ss_pred             hhhHhhhccC-hhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHC------CCCccHH------
Q 037164           10 RLNLIFEVHG-VEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDM------GFARRTI------   62 (250)
Q Consensus        10 ~l~~~~k~~~-~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~------~~~p~~~------   62 (250)
                      ++..+.-.++ .+.|..+|+++....|...++-              --+|.++.++..+.      ...+...      
T Consensus       254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~  333 (754)
T 4gns_B          254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM  333 (754)
T ss_dssp             HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence            4444444566 5779999999887755433221              22344555444321      1222211      


Q ss_pred             HH-HHHH----HHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           63 YC-YIMM----ILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        63 ~y-~~li----~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .+ ..|+    .-+...|+++.|+++-++-..  +.|+ -.||-.|..+|.+.||++.|+-.++.+-
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            11 1122    335669999999999996544  5665 5799999999999999999999999873

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=87.26  E-value=2.8  Score=32.57  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=51.9

Q ss_pred             hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhc-CChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLK-----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKN-GLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~  248 (250)
                      -..|+.+...|.+     .|+.++|...|++...-...-+..++...-+.+++. |+.+.+.+.+++.++.
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            4578888888888     499999999999988644333477788888888884 9999999999987753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.66  E-value=1.8  Score=35.15  Aligned_cols=59  Identities=17%  Similarity=0.066  Sum_probs=39.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          188 MTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       188 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..++..+...|+.++|...+..+.. ..+.+...|..||.+|.+.|+..+|.+.|++..+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~-~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTF-EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455666777777777777776653 2445666777777777777777777777766543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.68  E-value=8.3  Score=26.30  Aligned_cols=66  Identities=2%  Similarity=-0.138  Sum_probs=40.8

Q ss_pred             CccHHHHHHHHHHHhhcCChh---hHHHHHHHHHhcCCCCCch-hHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           58 ARRTIYCYIMMILNYLTGNRE---KIDALMLEMEEKSINGDQF-TLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~---~a~~~~~~m~~~gi~p~~~-ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .|+..+--....++.++.+.+   ++..++++....+-. +.. ..--|--++.+.|+++.|.+..+.+.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            456666555666666666554   566777776654211 222 222345788888888888888888764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.83  E-value=7.3  Score=27.67  Aligned_cols=78  Identities=10%  Similarity=-0.075  Sum_probs=48.3

Q ss_pred             chhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------------CCCcchHH
Q 037164          165 LKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP--------------------YDFGLPSS  224 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------~~~~~~~~  224 (250)
                      ..|+++.+++..+..  .+...|..|-......|+++-|++.|++...-+.-                    -...-++.
T Consensus        17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~   94 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGS   94 (177)
T ss_dssp             HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHH
Confidence            566777777776655  34567777777777777777777777663311000                    01123455


Q ss_pred             HHHHHHhcCChhHHHHHHHH
Q 037164          225 LIDAHCKNGLLEKAQSLINH  244 (250)
Q Consensus       225 li~~~~~~g~~~~a~~~~~~  244 (250)
                      -...+.-.|+++++.+++.+
T Consensus        95 af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           95 MLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            56666677777777777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=81.19  E-value=7  Score=26.03  Aligned_cols=19  Identities=21%  Similarity=0.130  Sum_probs=9.3

Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 037164          193 LLLKLDDVKGAEKTLRNWT  211 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~  211 (250)
                      ++.|.|++++|.+.++.+.
T Consensus        83 g~yklg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLL  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            4445555555555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.8
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.37
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.24
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.03
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.02
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.71
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.27
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.11
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.05
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.04
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.87
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.39
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.06
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.87
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.4
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.33
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.93
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.75
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.74
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.09
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.84
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.46
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	90.04
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	87.18
d1khda1	69	Anthranilate phosphoribosyltransferase (TrpD) {Pec	86.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.25
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.08
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	80.93

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-09  Score=86.09  Aligned_cols=180  Identities=10%  Similarity=-0.062  Sum_probs=134.2

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      +..++..+...+...|++++|...++...+.  .| +...|..+...+...|++++|...+++.... .. .+...+..+
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~l  243 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SP-NHAVVHGNL  243 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CT-TCHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH-hh-hHHHHHHHH
Confidence            4566777778888999999999999987664  34 4567888889999999999999999988664 22 223333333


Q ss_pred             ---------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCC
Q 037164          139 ---------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDD  199 (250)
Q Consensus       139 ---------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~  199 (250)
                               .++|...|++..... |+...  ++.       ..++..++.+.++..   .+.+...+..+...+.+.|+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC-SSCHH--HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence                     888999998876433 33321  222       555555665555443   34556888889999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          200 VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       200 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      +++|...|++.... .+-+..++..+-..|.+.|++++|...|++.++
T Consensus       321 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999998743 333567788899999999999999999998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.1e-10  Score=88.48  Aligned_cols=231  Identities=10%  Similarity=-0.022  Sum_probs=163.7

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcc-ccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQ-CLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREK   79 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~-~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~   79 (250)
                      +.+.+.|++++|.+.|+++.+..|+ +..+.           .++|...|++..+.+ +-+..+|..+..+|.+.|++++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence            3467889999999999998877554 33333           899999999998763 4467899999999999999999


Q ss_pred             HHHHHHHHHhcCC------------------------------------------------------------------C
Q 037164           80 IDALMLEMEEKSI------------------------------------------------------------------N   93 (250)
Q Consensus        80 a~~~~~~m~~~gi------------------------------------------------------------------~   93 (250)
                      |.+.+........                                                                  .
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ  165 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence            9999887654321                                                                  1


Q ss_pred             C-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCch---
Q 037164           94 G-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSS---  160 (250)
Q Consensus        94 p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~---  160 (250)
                      | +...+..+...+...|+++.|...+++....  -+-+...+..+         +++|...+.+.......... .   
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~  242 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHGN  242 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH-HHHH
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH-HHHH
Confidence            1 2344555567777788888888888876542  11122333333         67777777776643321111 0   


Q ss_pred             --hhhcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCh
Q 037164          161 --NAFELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLL  235 (250)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  235 (250)
                        ..|...++.+++.+.++..   .+.+...|..+...+.+.|+.++|...++.... ..+.+...+..+...+.+.|++
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc-cCCccchhhhHHHHHHHHCCCH
Confidence              0111566666666666553   234457788888999999999999999988774 3456778888999999999999


Q ss_pred             hHHHHHHHHHHh
Q 037164          236 EKAQSLINHAET  247 (250)
Q Consensus       236 ~~a~~~~~~m~~  247 (250)
                      ++|...+++.++
T Consensus       322 ~~A~~~~~~al~  333 (388)
T d1w3ba_         322 EEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.2e-10  Score=86.33  Aligned_cols=202  Identities=9%  Similarity=-0.094  Sum_probs=139.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.. +-+..+|..+..+|...|++++|...|.+..+.. +-+...|..+..+|...|++++|.+.+++
T Consensus        35 ~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~  112 (323)
T d1fcha_          35 LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRD  112 (323)
T ss_dssp             HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhh
Confidence            556666666666542 3457788889999999999999999999876642 22457778888899999999999999988


Q ss_pred             HhhCCCCCcc-------HHHHHHH---------------HHHHHHHHHHHHhhhhccCCchhhhc-------chhHHHHH
Q 037164          122 TESNPQMVLD-------FNLLAVL---------------LYMAMTMLKKSEGLIATKRNSSNAFE-------LKDQLYRI  172 (250)
Q Consensus       122 m~~~~g~~~~-------~~~~~~l---------------~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  172 (250)
                      ......-...       ......+               ..++.+.+.+..... |.......+.       ..++.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~~~~A  191 (323)
T d1fcha_         113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKA  191 (323)
T ss_dssp             HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh-hcccccccchhhHHHHHHHHHHhhh
Confidence            7543111000       0000000               556666666655322 2221110221       66667777


Q ss_pred             HHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          173 WKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       173 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+.++...   +.+...|..+-..|.+.|++++|.+.|++..... +-+..+|..+..+|.+.|++++|...|++.++
T Consensus       192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77766542   2345788889999999999999999999987542 33567799999999999999999999998775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.5e-07  Score=72.79  Aligned_cols=187  Identities=10%  Similarity=0.022  Sum_probs=130.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+....-......|...+....+.|+++.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            57888999998876555667788888889999999999999999877643222344788999999999999999999999


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 037164          122 TESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVK  201 (250)
Q Consensus       122 m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  201 (250)
                      ........+......+.          ++...   ..      ......++++..-...+.+...|...+..+.+.|+++
T Consensus       160 al~~~~~~~~~~~~~a~----------~e~~~---~~------~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         160 AREDARTRHHVYVTAAL----------MEYYC---SK------DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHTSTTCCTHHHHHHHH----------HHHHT---SC------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHhCCCcHHHHHHHHH----------HHHHh---cc------CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence            87651222222221111          00000   00      1122222333322223344577899999999999999


Q ss_pred             HHHHHHHHHHhCC-CCCC--CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          202 GAEKTLRNWTSKN-LPYD--FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       202 ~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .|..+|++..... .+|+  ...|...+.--...|+.+.+..+.+++.+
T Consensus       221 ~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999987653 3443  34788888888889999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.7e-07  Score=70.52  Aligned_cols=174  Identities=10%  Similarity=-0.069  Sum_probs=125.3

Q ss_pred             HHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH------
Q 037164           66 IMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL------  138 (250)
Q Consensus        66 ~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l------  138 (250)
                      -.-..+.+.|++++|...|+...+.  .| +..+|..+..+|...|++++|...+++....  .+-+...+..+      
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccc
Confidence            3455688999999999999998875  34 5678999999999999999999999987643  11123333333      


Q ss_pred             ---HHHHHHHHHHHHhhhhccCCchhhhc----------------------chhHHHHHHHHHhcc---CC--CChhhHH
Q 037164          139 ---LYMAMTMLKKSEGLIATKRNSSNAFE----------------------LKDQLYRIWKHYGQT---RK--VFNKGYM  188 (250)
Q Consensus       139 ---~~~a~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~--~~~~~~~  188 (250)
                         .++|.+.+++..........   .+.                      ..+...++.+.+...   .+  .+...+.
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~  176 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAH---LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  176 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGG---GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             cccccccccchhhHHHhccchHH---HHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence               88888888887632211110   000                      233444444444332   11  3456777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          189 TMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       189 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+-..+...|++++|...|++.... .+-+..+|..+...|.+.|++++|.+.|++.++
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhccccccccc-ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            8888999999999999999998754 234577899999999999999999999999875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.3e-06  Score=64.58  Aligned_cols=213  Identities=8%  Similarity=-0.025  Sum_probs=136.4

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccc-cccc------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChh
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQC-LFFG------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNRE   78 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~-~~y~------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~   78 (250)
                      .++.+.+..++|.++++.+....|+- ..|+            .++|+..+++..+.+ +-+..+|+.+-..+.+.|+++
T Consensus        51 ~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~  129 (315)
T d2h6fa1          51 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPS  129 (315)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHH
Confidence            35667889999999999988874443 3443            789999999987763 456889999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKSEGLIATKRN  158 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~  158 (250)
                      +|+++++.+.+.. +-+...|+.+...+.+.|++++|.+.++++...  -+-+...|+..   + .++..+.        
T Consensus       130 eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r---~-~~l~~~~--------  194 (315)
T d2h6fa1         130 QELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQR---Y-FVISNTT--------  194 (315)
T ss_dssp             THHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHH---H-HHHHHTT--------
T ss_pred             HHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHH---H-HHHHHcc--------
Confidence            9999999888752 236788999999999999999999999998753  12233344322   0 0011100        


Q ss_pred             chhhhcchhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhc--
Q 037164          159 SSNAFELKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP-YDFGLPSSLIDAHCKN--  232 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~--  232 (250)
                         .+...+..+++++.+.....  | +...|+.+...+. ....+++.+.++........ .+...+..+...|...  
T Consensus       195 ---~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~  270 (315)
T d2h6fa1         195 ---GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE  270 (315)
T ss_dssp             ---CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ---ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence               11133444445544433321  3 3455665555444 44467777877776643222 2344556667776553  


Q ss_pred             CChhHHHHHHHH
Q 037164          233 GLLEKAQSLINH  244 (250)
Q Consensus       233 g~~~~a~~~~~~  244 (250)
                      +..+.+...+++
T Consensus       271 ~~~~~~~~~~~k  282 (315)
T d2h6fa1         271 NQCDNKEDILNK  282 (315)
T ss_dssp             TTCSSHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            444444444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=9.9e-06  Score=60.09  Aligned_cols=166  Identities=11%  Similarity=-0.065  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|...|++..+.. +-++.+|+.+-.+|.+.|++++|.+.|++..+.  .| +..+|..+..+|...|+++.|.+.|+
T Consensus        53 ~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  129 (259)
T d1xnfa_          53 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLL  129 (259)
T ss_dssp             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            889999999988763 456889999999999999999999999988774  34 45678888899999999999999999


Q ss_pred             HHhhCCCCCccHHH--HHHH------HHHHHHHHHHHHhhhhccCCchh---hhc----chhHHHHHHHHHhccCC--CC
Q 037164          121 MTESNPQMVLDFNL--LAVL------LYMAMTMLKKSEGLIATKRNSSN---AFE----LKDQLYRIWKHYGQTRK--VF  183 (250)
Q Consensus       121 ~m~~~~g~~~~~~~--~~~l------~~~a~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--~~  183 (250)
                      ..... . +.+...  +..+      .......+........+......   .+.    ..+....+.........  ++
T Consensus       130 ~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (259)
T d1xnfa_         130 AFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH  207 (259)
T ss_dssp             HHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            88653 1 222222  2222      11111112121111111111000   000    23333333333322211  22


Q ss_pred             -hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          184 -NKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       184 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                       ..+|..+-..|...|++++|.+.|++..+
T Consensus       208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         208 LSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             25667778889999999999999998874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=7.3e-06  Score=63.06  Aligned_cols=236  Identities=14%  Similarity=0.048  Sum_probs=149.7

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhcccc------ccc-----------hhHHHHHHHHHHHC----CC-CccHHHHHHHHH
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCL------FFG-----------VGKAEMVVQEMKDM----GF-ARRTIYCYIMMI   69 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~------~y~-----------~~~A~~~~~~m~~~----~~-~p~~~~y~~li~   69 (250)
                      .++...|++++|.++|++.....|+..      .+.           .++|...|++..+.    +- .....++..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            356678999999999998766544321      121           88999999887553    11 112356677778


Q ss_pred             HHhhcCChhhHHHHHHHHHh----cCCCCC--c-hhHhhhHHHHHhcCChhHHHHHHHHHhhC-C--CCCccHHHHHHH-
Q 037164           70 LNYLTGNREKIDALMLEMEE----KSINGD--Q-FTLGIRPSAYAAASDIHGMDKIINMTESN-P--QMVLDFNLLAVL-  138 (250)
Q Consensus        70 ~~~~~g~~~~a~~~~~~m~~----~gi~p~--~-~ty~~li~~~~~~~~~~~a~~~~~~m~~~-~--g~~~~~~~~~~l-  138 (250)
                      .+...|++..+...+.....    .+..+.  . ..+..+-..+...|+++.+...+...... +  +.......+... 
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            89999999999998887543    222222  1 34555668889999999999999887543 1  111122222222 


Q ss_pred             --------HHHHHHHHHHHHhhhhccCCch----hhhc-------chhHHHHHHHHHhccCC-------CChhhHHHHHH
Q 037164          139 --------LYMAMTMLKKSEGLIATKRNSS----NAFE-------LKDQLYRIWKHYGQTRK-------VFNKGYMTMMG  192 (250)
Q Consensus       139 --------~~~a~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~li~  192 (250)
                              ...+...+.+............    ..+.       ..+...++...++....       .....+..+-.
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence                    4555555555442211111100    0111       44555566555544322       12244566778


Q ss_pred             HHHhcCCHHHHHHHHHHHHh----CCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          193 LLLKLDDVKGAEKTLRNWTS----KNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       193 ~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+...|+.++|...+++...    .+..| ...++..+-..|.+.|++++|.+.+++.++
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998752    23333 345678888999999999999999998754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=3.4e-05  Score=59.08  Aligned_cols=177  Identities=8%  Similarity=-0.065  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHh--------------hcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNY--------------LTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYA  107 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~--------------~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~  107 (250)
                      .+++..+|++.... ++-+...|-.-+.-+-              ..+..++|..+++...+...+.+...|...+...-
T Consensus        32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45566777777664 3344455544333222              23345788889988776655556678888899999


Q ss_pred             hcCChhHHHHHHHHHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhc
Q 037164          108 AASDIHGMDKIINMTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQ  178 (250)
Q Consensus       108 ~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (250)
                      +.|+++.|..+|+++... .-......|...         .+.|.++|+++..                           
T Consensus       111 ~~~~~~~a~~i~~~~l~~-~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~---------------------------  162 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---------------------------  162 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---------------------------
T ss_pred             hcccHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH---------------------------
Confidence            999999999999998754 221112233222         3333333333321                           


Q ss_pred             cCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          179 TRKVFNKGYMTMMGL-LLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       179 ~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ..+.+...|...... +...|+.+.|..+|+.+... .+.+...|...++.+.+.|+++.|..+|++.++.
T Consensus       163 ~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            222222333333222 33458899999999999854 4556788999999999999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=3.8e-05  Score=58.25  Aligned_cols=174  Identities=7%  Similarity=-0.030  Sum_probs=96.1

Q ss_pred             HHHHHHHHhhcCChhhHHHHHHHHHhc----CCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           64 CYIMMILNYLTGNREKIDALMLEMEEK----SING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        64 y~~li~~~~~~g~~~~a~~~~~~m~~~----gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      |.-..++|...|++++|.+.|.+..+.    +-.| -..+|+.+-.+|.+.|++++|.+.+++......-..+..     
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~-----  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR-----  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch-----
Confidence            333456788888999998888876542    1112 235788888899999999999888886533100001111     


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhc-chhHHHHHHHHHhccCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFE-LKDQLYRIWKHYGQTRK-V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL  215 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  215 (250)
                        .+...+..+.........   -|. -.....++.++...... + ...+|..+...+.+.|++++|...|++......
T Consensus       115 --~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         115 --RGANFKFELGEILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             --HHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             --hHHHHHHHHHHhHhhHHH---HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence              111111111100000000   000 11111222222222222 1 125677888899999999999999999775433


Q ss_pred             CCCCcc------hHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          216 PYDFGL------PSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       216 ~~~~~~------~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ......      +..++..+...|+++.|...+++..+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            222222      23445566778999999988887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=5.7e-05  Score=58.29  Aligned_cols=105  Identities=10%  Similarity=-0.124  Sum_probs=76.3

Q ss_pred             ChhHHHHHHHHhhhhhcccc-ccc---------------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCC
Q 037164           19 GVEQAEIYFDNISKLLRQCL-FFG---------------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGN   76 (250)
Q Consensus        19 ~~~~a~~~f~~~~~~~~~~~-~y~---------------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~   76 (250)
                      ..++|..+++.+....|+.. .|+                     .++|+.++++..+.+ +.+...|..+..++...++
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence            34789999998887755543 222                     678999999988763 4567778877777767664


Q ss_pred             --hhhHHHHHHHHHhcCCCCCchhHhhhH-HHHHhcCChhHHHHHHHHHhhC
Q 037164           77 --REKIDALMLEMEEKSINGDQFTLGIRP-SAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        77 --~~~a~~~~~~m~~~gi~p~~~ty~~li-~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                        ++++...+....+.. +++...+...+ ..+...+.+++|...++.....
T Consensus       123 ~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence              789999999877752 23455555444 7777889999999999887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=0.0012  Score=50.02  Aligned_cols=205  Identities=12%  Similarity=0.055  Sum_probs=129.0

Q ss_pred             hhHHHHHHHHHHHCCCCcc-----HHHHHHHHHHHhhcCChhhHHHHHHHHHhcC----CCC-CchhHhhhHHHHHhcCC
Q 037164           42 VGKAEMVVQEMKDMGFARR-----TIYCYIMMILNYLTGNREKIDALMLEMEEKS----ING-DQFTLGIRPSAYAAASD  111 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g----i~p-~~~ty~~li~~~~~~~~  111 (250)
                      .++|+.++++..+.. +.+     ..+++.+-.+|...|++++|...+++..+..    -.+ ...++..+...+...|+
T Consensus        28 ~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (366)
T d1hz4a_          28 PDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  106 (366)
T ss_dssp             HHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            899999999988753 222     3467788889999999999999999875431    111 23456667788999999


Q ss_pred             hhHHHHHHHHHhhC---CCC--CccH-HHHHHH---------HHHHHHHHHHHHhhhhccCCch--hhhc----------
Q 037164          112 IHGMDKIINMTESN---PQM--VLDF-NLLAVL---------LYMAMTMLKKSEGLIATKRNSS--NAFE----------  164 (250)
Q Consensus       112 ~~~a~~~~~~m~~~---~g~--~~~~-~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~--~~~~----------  164 (250)
                      +..+...+.+....   .+.  .+.. ..+..+         ++.+...+..............  ..+.          
T Consensus       107 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (366)
T d1hz4a_         107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG  186 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            99999988875321   011  1221 222222         7777777777663322211100  0111          


Q ss_pred             ----chhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhcCC
Q 037164          165 ----LKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYD---FGLPSSLIDAHCKNGL  234 (250)
Q Consensus       165 ----~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~  234 (250)
                          ......++.........  + ....+......+...|+.+.|...+++........+   ...+..+...|...|+
T Consensus       187 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  266 (366)
T d1hz4a_         187 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE  266 (366)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence                22223333333333332  1 124456666788899999999999988654322222   2335557888999999


Q ss_pred             hhHHHHHHHHHHh
Q 037164          235 LEKAQSLINHAET  247 (250)
Q Consensus       235 ~~~a~~~~~~m~~  247 (250)
                      +++|...+++...
T Consensus       267 ~~~A~~~~~~al~  279 (366)
T d1hz4a_         267 FEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=0.00012  Score=53.86  Aligned_cols=201  Identities=11%  Similarity=-0.064  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHHCC-CCc--cHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMG-FAR--RTIYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~-~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~  117 (250)
                      .+.|+.-+++..... ..+  ...+|..+-.+|.+.|++++|.+.|+...+.  .| +..+|+.+-.+|.+.|++++|.+
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            566667777776542 122  2457778888999999999999999987764  34 56889999999999999999999


Q ss_pred             HHHHHhhC-CCCCccHHHHHHH------HHHHHHHHHHHHhhhhccCCchhhhc-----chhH--HHHHHHHHhccCCCC
Q 037164          118 IINMTESN-PQMVLDFNLLAVL------LYMAMTMLKKSEGLIATKRNSSNAFE-----LKDQ--LYRIWKHYGQTRKVF  183 (250)
Q Consensus       118 ~~~~m~~~-~g~~~~~~~~~~l------~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~  183 (250)
                      .|++.... |+..........+      .++|.+.+++..... |.......+.     ..+.  .............+.
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            99998653 2222111112222      888888888876443 2222110111     1111  111111111111222


Q ss_pred             hhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037164          184 NKGYMTMMGLLLKLDD----VKGAEKTLRNWTSKNLPY-DFGLPSSLIDAHCKNGLLEKAQSLINHAETK  248 (250)
Q Consensus       184 ~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  248 (250)
                      ...++ ++..+.....    .+.+...+.....  ..| ...+|..|-..|...|++++|...|++.+..
T Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            22222 2333322211    2222222211110  111 2345677888999999999999999998754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00016  Score=46.71  Aligned_cols=81  Identities=6%  Similarity=-0.100  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|+.+|++..+. -+.+...|+.+-.+|.+.|++++|.+.+....+.+ +.+...|..+..++...|++++|...|++
T Consensus        19 ~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~   96 (117)
T d1elwa_          19 IDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEE   96 (117)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHHHHHHH
Confidence            45666666666554 35677889999999999999999999999988763 34778899999999999999999999999


Q ss_pred             Hhh
Q 037164          122 TES  124 (250)
Q Consensus       122 m~~  124 (250)
                      ...
T Consensus        97 a~~   99 (117)
T d1elwa_          97 GLK   99 (117)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00027  Score=54.09  Aligned_cols=173  Identities=8%  Similarity=-0.067  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTG-NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIIN  120 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~  120 (250)
                      .++|+.++++..+.+ +-+...|+..-.++...| ++++|++.++...+.. +-+..+|+.+-..+.+.|++++|.+.++
T Consensus        59 ~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~  136 (315)
T d2h6fa1          59 SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIA  136 (315)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence            689999999998864 456678898888888876 5899999999876652 2367889999999999999999999999


Q ss_pred             HHhhCCCCCccHHHHHHH---------HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHH
Q 037164          121 MTESNPQMVLDFNLLAVL---------LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMM  191 (250)
Q Consensus       121 ~m~~~~g~~~~~~~~~~l---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  191 (250)
                      ++...  -+-+...|..+         .++|++.++++..                           ..+.+...|+.+-
T Consensus       137 kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---------------------------~~p~n~~a~~~r~  187 (315)
T d2h6fa1         137 DILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---------------------------EDVRNNSVWNQRY  187 (315)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---------------------------HCTTCHHHHHHHH
T ss_pred             hhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------------------HCCccHHHHHHHH
Confidence            98653  22234444333         2222222222221                           1223345666655


Q ss_pred             HHHHhcCC------HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          192 GLLLKLDD------VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       192 ~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..+.+.+.      +++|...+.+.... .+.+...|+.+...+... ..+++.+.++...+
T Consensus       188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~-~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         188 FVISNTTGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHTTCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred             HHHHHccccchhhhhHHhHHHHHHHHHh-CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence            55555554      57888888887743 344677777776655444 45777777766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=9.6e-05  Score=52.30  Aligned_cols=64  Identities=8%  Similarity=-0.105  Sum_probs=50.3

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      +.+...|+.+-.+|.+.|++++|...|+...+  +.|+ ..+|..+-.+|.+.|++++|...|++..
T Consensus        35 p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          35 PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677888888888888888888888886654  4564 5677888888888888888888888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.00023  Score=50.35  Aligned_cols=52  Identities=6%  Similarity=-0.058  Sum_probs=37.2

Q ss_pred             HHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           69 ILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        69 ~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ..+...|++++|++.|.++    .+|+..+|..+-.+|.+.|++++|.+.|++..+
T Consensus        13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            3456777888887777643    346667777777888888888888888777653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=5.8e-06  Score=64.12  Aligned_cols=208  Identities=7%  Similarity=-0.122  Sum_probs=127.8

Q ss_pred             hhhccChhHHHHHHHHhhhhhccc-cccc-------------hhHHHHHHHHHHHCCCCccHHHHHHHH-HHHhhcCChh
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQC-LFFG-------------VGKAEMVVQEMKDMGFARRTIYCYIMM-ILNYLTGNRE   78 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~-~~y~-------------~~~A~~~~~~m~~~~~~p~~~~y~~li-~~~~~~g~~~   78 (250)
                      +...|++++|..+|+.+....|+. ..|.             .++|...+++..+.. +++...+..++ ..+...+.++
T Consensus        83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            344566889999999987764433 3322             689999999998863 45566665544 6777889999


Q ss_pred             hHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHH-HHHH-----HHHHHHHHHHHHhh
Q 037164           79 KIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNL-LAVL-----LYMAMTMLKKSEGL  152 (250)
Q Consensus        79 ~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~-~~~l-----~~~a~~~~~~~~~~  152 (250)
                      +|...++...+.+- -+...|+.+-..+.+.|++++|...++.....   .|+... +...     .+++...+......
T Consensus       162 ~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         162 EELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHHHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            99999997766533 26678899999999999998876555433221   111111 1111     22333333333221


Q ss_pred             hhccCCchhhhc-------chhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCcc
Q 037164          153 IATKRNSSNAFE-------LKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPY-DFGL  221 (250)
Q Consensus       153 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~  221 (250)
                      ......   .+.       ..+....+.+.+.....  | +...|..+...+...|+.++|.+.+++....  .| +...
T Consensus       238 ~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y  312 (334)
T d1dcea1         238 RAEPLF---RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY  312 (334)
T ss_dssp             CCCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             Ccchhh---HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHH
Confidence            111111   111       55666666666655544  3 2366677778888899999999999988753  34 2345


Q ss_pred             hHHHHHHHHh
Q 037164          222 PSSLIDAHCK  231 (250)
Q Consensus       222 ~~~li~~~~~  231 (250)
                      |+.|-..+.-
T Consensus       313 ~~~L~~~~~~  322 (334)
T d1dcea1         313 LDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            5555544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00013  Score=49.86  Aligned_cols=82  Identities=9%  Similarity=-0.124  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|+..|++..+.+ +-+...|..+-.+|.+.|++++|...|+...+.+ +-+...|..+..+|...|++++|.+.+++
T Consensus        26 y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~~~~~  103 (159)
T d1a17a_          26 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYET  103 (159)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            667777777776653 5578889999999999999999999999887753 23557899999999999999999999999


Q ss_pred             HhhC
Q 037164          122 TESN  125 (250)
Q Consensus       122 m~~~  125 (250)
                      ....
T Consensus       104 a~~~  107 (159)
T d1a17a_         104 VVKV  107 (159)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.79  E-value=0.0001  Score=47.34  Aligned_cols=79  Identities=4%  Similarity=-0.103  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINM  121 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~  121 (250)
                      .++|...|++..+.+ +-+..+|..+-.+|.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.+++
T Consensus        32 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          32 LAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence            334444444443332 3357888888888999999999999998776642 23567788888899999999999988887


Q ss_pred             H
Q 037164          122 T  122 (250)
Q Consensus       122 m  122 (250)
                      .
T Consensus       110 ~  110 (112)
T d1hxia_         110 W  110 (112)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.00036  Score=49.15  Aligned_cols=66  Identities=5%  Similarity=-0.215  Sum_probs=56.9

Q ss_pred             CccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           58 ARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        58 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .|++..+...-+.|.+.|++++|...|.+..+.. +.+...|+.+-.+|.+.|++++|...|++...
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~   66 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE   66 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence            3777778888899999999999999999877652 34667899999999999999999999999864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.00025  Score=53.50  Aligned_cols=204  Identities=14%  Similarity=-0.068  Sum_probs=111.4

Q ss_pred             cChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHhhcCChhhHHHHHHHHHhc--
Q 037164           18 HGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDM----GFAR-RTIYCYIMMILNYLTGNREKIDALMLEMEEK--   90 (250)
Q Consensus        18 ~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~----~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--   90 (250)
                      +++++|.++|...-.......-  .++|.+.|.+..+.    +-.+ -..+|+.+-.+|.+.|++++|.+.++...+.  
T Consensus        31 ~~~~~Aa~~y~~aa~~y~~~~~--~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~  108 (290)
T d1qqea_          31 YKFEEAADLCVQAATIYRLRKE--LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT  108 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhh
Confidence            3567777777665432111111  56677777666442    2122 2468899999999999999999999975442  


Q ss_pred             --CC-CCCchhHhhhHHHHH-hcCChhHHHHHHHHHhhC---CCCCcc-HHHHHHH---------HHHHHHHHHHHHhhh
Q 037164           91 --SI-NGDQFTLGIRPSAYA-AASDIHGMDKIINMTESN---PQMVLD-FNLLAVL---------LYMAMTMLKKSEGLI  153 (250)
Q Consensus        91 --gi-~p~~~ty~~li~~~~-~~~~~~~a~~~~~~m~~~---~g~~~~-~~~~~~l---------~~~a~~~~~~~~~~~  153 (250)
                        |- .....++..+...|- ..|++++|.+.+++....   .+..+. ..++..+         +++|.+.+++.....
T Consensus       109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence              11 111345556666664 469999999999876421   022221 1122222         566666665554322


Q ss_pred             hccCCchhhhcchhHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCC---cchHHHHHH
Q 037164          154 ATKRNSSNAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNL-PYDF---GLPSSLIDA  228 (250)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~---~~~~~li~~  228 (250)
                      ..... .                    .... ..+...+..+...|+.+.|...+++...... .++.   .....|+.+
T Consensus       189 ~~~~~-~--------------------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a  247 (290)
T d1qqea_         189 MGNRL-S--------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA  247 (290)
T ss_dssp             SSCTT-T--------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred             ccchh-h--------------------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence            11111 0                    0111 2233445566778889999888888764321 1222   234556666


Q ss_pred             HHhc--CChhHHHHHHHH
Q 037164          229 HCKN--GLLEKAQSLINH  244 (250)
Q Consensus       229 ~~~~--g~~~~a~~~~~~  244 (250)
                      +-..  +.+++|...|+.
T Consensus       248 ~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         248 VNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HHTTCTTTHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            5542  346666665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8.7e-05  Score=48.55  Aligned_cols=82  Identities=13%  Similarity=-0.082  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCCh---hhHHHHHHHHHhcCCCCC-chhHhhhHHHHHhcCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNR---EKIDALMLEMEEKSINGD-QFTLGIRPSAYAAASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~---~~a~~~~~~m~~~gi~p~-~~ty~~li~~~~~~~~~~~a~~  117 (250)
                      +++|++.|++....+ +.++.++..+-.++.+.++.   ++|.+++++....+-.|+ ..+|..+-.+|.+.|++++|.+
T Consensus        15 l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~   93 (122)
T d1nzna_          15 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   93 (122)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHH
Confidence            345555555554432 45667777777777765544   458888887666543333 2366777788888888888888


Q ss_pred             HHHHHhh
Q 037164          118 IINMTES  124 (250)
Q Consensus       118 ~~~~m~~  124 (250)
                      .|++...
T Consensus        94 ~~~~aL~  100 (122)
T d1nzna_          94 YVRGLLQ  100 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=0.0005  Score=48.03  Aligned_cols=113  Identities=10%  Similarity=-0.076  Sum_probs=84.3

Q ss_pred             HhhhccChhHHHHHHHHhhhhhcccc--ccc-----hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHH
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCL--FFG-----VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALML   85 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~--~y~-----~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~   85 (250)
                      .....|++++|.+.|.......++..  .+.     ...+..+-..        ....+..+..++.+.|++++|...++
T Consensus        20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~--------~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED--------KVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            45678999999999998776533221  111     2222222211        24678889999999999999999999


Q ss_pred             HHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC----CCCCccHHH
Q 037164           86 EMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESN----PQMVLDFNL  134 (250)
Q Consensus        86 ~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~----~g~~~~~~~  134 (250)
                      ...+. -+-+...|..++.+|.+.|+.++|.+.|++....    -|+.|+..+
T Consensus        92 ~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          92 ALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            98775 2337789999999999999999999999987431    389998765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00061  Score=47.06  Aligned_cols=103  Identities=15%  Similarity=0.027  Sum_probs=77.4

Q ss_pred             HhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC
Q 037164           13 LIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI   92 (250)
Q Consensus        13 ~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi   92 (250)
                      .+.+.|++++|...|.+.....+....+.-... .....+       ...+|+.+..+|.+.|++++|...++.....+ 
T Consensus        22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~-~~~~~~-------~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-   92 (170)
T d1p5qa1          22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA-QKAQAL-------RLASHLNLAMCHLKLQAFSAAIESCNKALELD-   92 (170)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH-HHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhccccchHHH-hhhchh-------HHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence            577889999999999988776444443331111 111111       12468889999999999999999999877752 


Q ss_pred             CCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           93 NGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        93 ~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      +.++..|..+-.+|...|++++|...|++...
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            23778888999999999999999999999865

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00057  Score=48.26  Aligned_cols=70  Identities=11%  Similarity=0.017  Sum_probs=33.3

Q ss_pred             hhccChhHHHHHHHHhhhhhccccccc-----------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHH
Q 037164           15 FEVHGVEQAEIYFDNISKLLRQCLFFG-----------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDAL   83 (250)
Q Consensus        15 ~k~~~~~~a~~~f~~~~~~~~~~~~y~-----------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~   83 (250)
                      ...|+++.|.+.|+.+..  +++..|.           .++|++.|++..+.+ +.++..|+.+-.+|.+.|++++|.+.
T Consensus        16 ~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             HHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence            345566666666655432  2222222           455555555554432 23344455555555555555555555


Q ss_pred             HHHH
Q 037164           84 MLEM   87 (250)
Q Consensus        84 ~~~m   87 (250)
                      |+.-
T Consensus        93 ~~kA   96 (192)
T d1hh8a_          93 LKEA   96 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.62  E-value=0.0016  Score=43.93  Aligned_cols=105  Identities=7%  Similarity=-0.092  Sum_probs=77.7

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS   91 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g   91 (250)
                      +.+.+.|++++|...|.+.....+......-.........       ....+|+.+..+|.+.|++++|++.++...+.+
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhh-------HHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            3567889999999999887765333332221111111111       124688899999999999999999999987753


Q ss_pred             CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                       +.++.+|..+..++...|+++.|...|+....
T Consensus        98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence             34778999999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.51  E-value=0.0055  Score=41.83  Aligned_cols=105  Identities=10%  Similarity=-0.051  Sum_probs=77.6

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccchhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcC
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFGVGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKS   91 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g   91 (250)
                      +.+.+.|++++|.+.|.......+.......+.. .....+       ...+|+.+-.+|.+.|++++|+..++...+.+
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~-~~~~~~-------~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES-KASESF-------LLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh-hhcchh-------HHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3577889999999999887665433332221111 111111       13567888899999999999999999987752


Q ss_pred             CCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhC
Q 037164           92 INGDQFTLGIRPSAYAAASDIHGMDKIINMTESN  125 (250)
Q Consensus        92 i~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~  125 (250)
                       +.+...|..+..+|...|++++|.+.|++....
T Consensus        95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             447788999999999999999999999998753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00098  Score=43.58  Aligned_cols=82  Identities=12%  Similarity=0.056  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCC-CCC-----chhHhhhHHHHHhcCChhHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSI-NGD-----QFTLGIRPSAYAAASDIHGM  115 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi-~p~-----~~ty~~li~~~~~~~~~~~a  115 (250)
                      .++|+..|.+..+. -+.+..+|..+-.+|.+.|++++|.+.+++..+..- .++     ..+|..+-..+...+++++|
T Consensus        20 y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A   98 (128)
T d1elra_          20 FDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA   98 (128)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHh-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            34555555555444 245678888888999999999999999988665210 011     13566666777888889999


Q ss_pred             HHHHHHHhh
Q 037164          116 DKIINMTES  124 (250)
Q Consensus       116 ~~~~~~m~~  124 (250)
                      .+.|++...
T Consensus        99 ~~~~~kal~  107 (128)
T d1elra_          99 IHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00034  Score=45.12  Aligned_cols=83  Identities=12%  Similarity=-0.109  Sum_probs=67.7

Q ss_pred             chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      ..++.+++...+...   .+.+...|..+-.+|.+.|++++|+..+.+.... .+.++..|..+..++...|++++|...
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~~~~~A~~~   93 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEFLNRFEEAKRT   93 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-ccchhhHHHHHHHHHHHccCHHHHHHH
Confidence            555666666666554   3344577889999999999999999999998855 455788899999999999999999999


Q ss_pred             HHHHHhc
Q 037164          242 INHAETK  248 (250)
Q Consensus       242 ~~~m~~~  248 (250)
                      |++.++.
T Consensus        94 ~~~a~~~  100 (117)
T d1elwa_          94 YEEGLKH  100 (117)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.26  E-value=0.00018  Score=46.10  Aligned_cols=81  Identities=10%  Similarity=-0.055  Sum_probs=66.0

Q ss_pred             chhHHHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQTRK--V-FNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      +.++..++...++....  | +...|..+-.++.+.|++++|+..|++..+. .+.+...|..|...|...|++++|.+.
T Consensus        28 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~~~~A~~~  106 (112)
T d1hxia_          28 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAALAS  106 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHCCCHHHHHHH
Confidence            55666666666666432  4 4588888999999999999999999998854 344688899999999999999999999


Q ss_pred             HHHHH
Q 037164          242 INHAE  246 (250)
Q Consensus       242 ~~~m~  246 (250)
                      +++.+
T Consensus       107 l~~~l  111 (112)
T d1hxia_         107 LRAWL  111 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00062  Score=46.33  Aligned_cols=82  Identities=10%  Similarity=-0.157  Sum_probs=52.4

Q ss_pred             chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHH
Q 037164          165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSL  241 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  241 (250)
                      +.++..++...++..   .+.+...|..+-.+|...|++++|...|++.... .+-+...|..+..+|...|++++|...
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-cccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444444333   2234466777777777777777777777777643 233556777777777777777777777


Q ss_pred             HHHHHh
Q 037164          242 INHAET  247 (250)
Q Consensus       242 ~~~m~~  247 (250)
                      +++..+
T Consensus       101 ~~~a~~  106 (159)
T d1a17a_         101 YETVVK  106 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00085  Score=43.60  Aligned_cols=83  Identities=12%  Similarity=0.025  Sum_probs=47.0

Q ss_pred             chhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhH
Q 037164          165 LKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDD---VKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEK  237 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~  237 (250)
                      ..+++.++.+.++..   .+.+..++..+-.++.+.++   +++|+.+|++.......|+ ..+|..|-.+|.+.|++++
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            344455555555443   22344556666666665443   3457777777664333332 2356666677777777777


Q ss_pred             HHHHHHHHHh
Q 037164          238 AQSLINHAET  247 (250)
Q Consensus       238 a~~~~~~m~~  247 (250)
                      |.+.|+++++
T Consensus        91 A~~~~~~aL~  100 (122)
T d1nzna_          91 ALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.0019  Score=43.23  Aligned_cols=61  Identities=10%  Similarity=-0.125  Sum_probs=35.6

Q ss_pred             hhhccChhHHHHHHHHhhhhhccc-cccc---------------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQC-LFFG---------------------VGKAEMVVQEMKDMGFARRTIYCYIMMILN   71 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~-~~y~---------------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~   71 (250)
                      |-+.+.+++|.+.|+......|+. ..+.                     +++|+..|++..+.+ +.+..+|+.+-.+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            445677778888887776663333 2332                     356666666666543 34455666666666


Q ss_pred             hhcC
Q 037164           72 YLTG   75 (250)
Q Consensus        72 ~~~g   75 (250)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.87  E-value=0.021  Score=38.70  Aligned_cols=104  Identities=9%  Similarity=0.005  Sum_probs=70.9

Q ss_pred             hHhhhccChhHHHHHHHHhhhhhccccccc-hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhc
Q 037164           12 NLIFEVHGVEQAEIYFDNISKLLRQCLFFG-VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEK   90 (250)
Q Consensus        12 ~~~~k~~~~~~a~~~f~~~~~~~~~~~~y~-~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   90 (250)
                      ..+.+.|++++|.+.|.+.....+...... ..+.       ... -+.+...|+.+-.+|.+.|++++|+..+....+.
T Consensus        35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG-------AKL-QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH-------GGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHH-------HHh-ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            345666777777777766543311111000 0000       000 0224567888889999999999999999988775


Q ss_pred             CCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           91 SINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        91 gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      . +.+...|..+-.+|.+.|+++.|.+.|+....
T Consensus       107 ~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         107 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3 33667889999999999999999999998865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.015  Score=37.58  Aligned_cols=61  Identities=7%  Similarity=-0.068  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           63 YCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        63 ~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      .+-.+-+.|.+.|++++|.+.|.+..+.+ +.+...|..+-.+|.+.|++++|.+.+++...
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            45566678999999999999999988762 34678899999999999999999999998753

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.41  E-value=0.051  Score=34.80  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             HhcCChhHHHHHHHHHhhC-CCCCccHHHHHHH----HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCC
Q 037164          107 AAASDIHGMDKIINMTESN-PQMVLDFNLLAVL----LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRK  181 (250)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~~-~g~~~~~~~~~~l----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (250)
                      .-.|.+++..+++.+...+ +--+-+|+.++.+    -+-..+.++...+.   .+.     ..++.+.++...+-... 
T Consensus        13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl-----s~C~Nlk~vv~C~~~~n-   83 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL-----DKCQNLKSVVECGVINN-   83 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG-----GGCSCTHHHHHHHHHTT-
T ss_pred             HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cCc-----hhhhcHHHHHHHHHHhc-
Confidence            3456666666766665332 1223456666666    22222333322211   111     14555566666654443 


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037164          182 VFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKKG  250 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  250 (250)
                      .+......-++.+.++|+-++-.++++.+.. ...+++...-.+-.+|-+-|...++.+++.+.=++|+
T Consensus        84 ~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          84 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            3345567788999999999999999998764 5666778888889999999999999999999988884

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.39  E-value=0.097  Score=37.81  Aligned_cols=198  Identities=10%  Similarity=0.042  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChh
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIH  113 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~  113 (250)
                      .++|++.|++..+.|   +...+..|-..|..    ..+...+..++..-...+.   ......+...+..    ..+.+
T Consensus        18 ~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~~~~~~~~~~~~~~~   91 (265)
T d1ouva_          18 FTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQNTN   91 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccccccccccccchhhH
Confidence            688999999998876   55566666666665    5678888888887666642   2333334333332    45778


Q ss_pred             HHHHHHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHHhhhhccCCc--hhhhc----chhHHHHHHHHHh
Q 037164          114 GMDKIINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSEGLIATKRNS--SNAFE----LKDQLYRIWKHYG  177 (250)
Q Consensus       114 ~a~~~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~  177 (250)
                      .|...++..... |...........          ...+...+........+....  ...|.    ...+.......++
T Consensus        92 ~a~~~~~~a~~~-g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  170 (265)
T d1ouva_          92 KALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYD  170 (265)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHhhhhhh-hhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhh
Confidence            888888887665 554433332222          444444444433211111100  00000    1122222222222


Q ss_pred             ccCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 037164          178 QTRK-VFNKGYMTMMGLLLK----LDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCK----NGLLEKAQSLINHAETK  248 (250)
Q Consensus       178 ~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~  248 (250)
                      .... .+......+-..|..    ..+.+.|..+|++....|.   +..+..|-..|.+    ..+.++|.+.|++..+.
T Consensus       171 ~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         171 KACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            2222 233333334334443    5689999999999887653   4566667777765    34799999999999887


Q ss_pred             C
Q 037164          249 K  249 (250)
Q Consensus       249 g  249 (250)
                      |
T Consensus       248 g  248 (265)
T d1ouva_         248 G  248 (265)
T ss_dssp             T
T ss_pred             c
Confidence            7

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.0047  Score=42.86  Aligned_cols=60  Identities=15%  Similarity=0.043  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHH
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAE  246 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  246 (250)
                      .+..+...+.+.|+.++|...++.+... .+.+...|..++.+|.+.|+..+|.+.|++..
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3555666777777777777777776632 34466667777777777777777777776653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.15  Score=36.76  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             hhhccChhHHHHHHHHhhhhhccccccc--------------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cC
Q 037164           14 IFEVHGVEQAEIYFDNISKLLRQCLFFG--------------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TG   75 (250)
Q Consensus        14 ~~k~~~~~~a~~~f~~~~~~~~~~~~y~--------------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g   75 (250)
                      +-+.+++++|.++|+...+.......|+              ...|...+..-.+.+   +...+..|...+..    ..
T Consensus        12 ~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~   88 (265)
T d1ouva_          12 SYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ   88 (265)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccccccch
Confidence            3456889999999988765422222222              566777777776665   23344444444432    45


Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHH----hcCChhHHHHHHHHHhhC
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYA----AASDIHGMDKIINMTESN  125 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~----~~~~~~~a~~~~~~m~~~  125 (250)
                      +.+.|...++.-.+.|..+.   ...+...+.    .......+...+......
T Consensus        89 ~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~  139 (265)
T d1ouva_          89 NTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDL  139 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcc
Confidence            66778888877666654322   122222222    234455666666665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.011  Score=40.45  Aligned_cols=22  Identities=9%  Similarity=-0.041  Sum_probs=13.3

Q ss_pred             hHHHHHhcCChhHHHHHHHHHh
Q 037164          102 RPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus       102 li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .-+.+.+.|+++.|.+.|++..
T Consensus        19 ~G~~~~~~~~~~~Ai~~y~~al   40 (170)
T d1p5qa1          19 RGTVYFKEGKYKQALLQYKKIV   40 (170)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            3345666666666666666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.82  E-value=0.1  Score=34.54  Aligned_cols=63  Identities=6%  Similarity=-0.225  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhc-----CCCCC-----chhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           61 TIYCYIMMILNYLTGNREKIDALMLEMEEK-----SINGD-----QFTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        61 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----gi~p~-----~~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      ..+|+.+-.+|.+.|++++|.+.+++..+.     ...++     ...|+.+-.+|...|++++|...|++..
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999986542     22222     2246777899999999999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.80  E-value=0.011  Score=39.66  Aligned_cols=62  Identities=16%  Similarity=0.007  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+|+.+-.+|.+.|++++|.+.+++.... .+.++.+|..+..+|...|++++|...|++.++
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677788888888898888888887754 345678888888888888999998888888765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.038  Score=33.46  Aligned_cols=62  Identities=15%  Similarity=0.003  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC---CCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          186 GYMTMMGLLLKLDDVKGAEKTLRNWTSK---NLPY---DFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       186 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      .+-.+-..+.+.|+++.|...|++....   ...+   ...+++.|-.+|.+.|++++|...++++++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            3445667788889999999888886532   1111   134577788888999999999999888765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.1  Score=31.44  Aligned_cols=65  Identities=9%  Similarity=-0.030  Sum_probs=50.9

Q ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhc---CC--CCC-chhHhhhHHHHHhcCChhHHHHHHHHHhh
Q 037164           60 RTIYCYIMMILNYLTGNREKIDALMLEMEEK---SI--NGD-QFTLGIRPSAYAAASDIHGMDKIINMTES  124 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---gi--~p~-~~ty~~li~~~~~~~~~~~a~~~~~~m~~  124 (250)
                      ++..|--+-..+.+.|++++|...|++-.+.   ..  .++ ..+++.|-.+|.+.|++++|.+.+++...
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            3445667788899999999999999986543   11  122 45788899999999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.33  E-value=0.036  Score=37.45  Aligned_cols=62  Identities=13%  Similarity=0.015  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..|..+-.++.+.|++++|+..+++.... .+.++..|..+-.+|.+.|++++|...|++.++
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhh-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            44555666777777777777777777643 234566677777777777777777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.93  E-value=0.069  Score=35.11  Aligned_cols=103  Identities=5%  Similarity=-0.204  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhc----------CChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcC
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLT----------GNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAAS  110 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~----------g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~  110 (250)
                      +++|...|++..+.. |.++.++..+-.+|...          +.+++|...|+...+.  .| +..+|..+-.+|...|
T Consensus        13 fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          13 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHHHHHcc
Confidence            689999999998874 66778888888888754          4456788888877653  45 5578888878887654


Q ss_pred             C-----------hhHHHHHHHHHhhCCCCCccHHHHHHH---HHHHHHHHHHHH
Q 037164          111 D-----------IHGMDKIINMTESNPQMVLDFNLLAVL---LYMAMTMLKKSE  150 (250)
Q Consensus       111 ~-----------~~~a~~~~~~m~~~~g~~~~~~~~~~l---~~~a~~~~~~~~  150 (250)
                      +           ++.|.+.|++...   +.|+...+...   ..++.+++.+..
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3           5677777777653   34544443332   445555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.0097  Score=48.18  Aligned_cols=62  Identities=10%  Similarity=-0.049  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ..+..+-..+...|++++|...|++.... .|-+...|+.|-..|...|+..+|...|.+.+.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45666777888888888888888887743 344567888888888888888888888877654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.74  E-value=0.18  Score=30.48  Aligned_cols=72  Identities=7%  Similarity=0.022  Sum_probs=52.1

Q ss_pred             ChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHH
Q 037164           76 NREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVLLYMAMTMLKKS  149 (250)
Q Consensus        76 ~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l~~~a~~~~~~~  149 (250)
                      |.=++.+-++.+-..++.|++....+-+.+|-+.+|+..|.++|+..+..  +.++..+|..++++..-.++++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilqelkptl~EL   92 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQELRPTLNEL   92 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHhhHHHHh
Confidence            33456677777777888999999999999999999999999999888754  3334456666555555555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.69  E-value=0.27  Score=32.32  Aligned_cols=107  Identities=9%  Similarity=-0.012  Sum_probs=71.3

Q ss_pred             HHHHHHH--HHHHhhcCChhhHHHHHHHHHhc--CCCCC----------chhHhhhHHHHHhcCChhHHHHHHHHHhhCC
Q 037164           61 TIYCYIM--MILNYLTGNREKIDALMLEMEEK--SINGD----------QFTLGIRPSAYAAASDIHGMDKIINMTESNP  126 (250)
Q Consensus        61 ~~~y~~l--i~~~~~~g~~~~a~~~~~~m~~~--gi~p~----------~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~  126 (250)
                      ..+|..+  ...+.+.|++++|.+.|.+-.+.  .. |+          ..+|+.+-.+|.+.|++++|.+.+++.... 
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~-   84 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc-
Confidence            3566666  44567789999999999987652  22 22          357888999999999999999888776532 


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037164          127 QMVLDFNLLAVLLYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKT  206 (250)
Q Consensus       127 g~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  206 (250)
                                         +.+...   .... .         .          +.....++.+-.+|.+.|++++|...
T Consensus        85 -------------------~~~~~~---~~~~-~---------~----------~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          85 -------------------FNRRGE---LNQD-E---------G----------KLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             -------------------HHHHCC---TTST-H---------H----------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -------------------cccccc---cccc-c---------c----------chhHHHHhhhHHHHHHHHHHHHHHHH
Confidence                               110000   0000 0         0          00123466778899999999999999


Q ss_pred             HHHHH
Q 037164          207 LRNWT  211 (250)
Q Consensus       207 ~~~m~  211 (250)
                      |++..
T Consensus       123 ~~~Al  127 (156)
T d2hr2a1         123 FKKVV  127 (156)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.55  E-value=0.097  Score=38.34  Aligned_cols=119  Identities=11%  Similarity=-0.009  Sum_probs=72.2

Q ss_pred             HhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHH-HHHHH--HHHHHHHHH
Q 037164           71 NYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFN-LLAVL--LYMAMTMLK  147 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-~~~~l--~~~a~~~~~  147 (250)
                      ..+.|++++|...+++-.+. -+-|...+..+...++..|++++|.+.++....   ..|+.. .+..+  +-.+.....
T Consensus         6 aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence            34679999999999987765 234668889999999999999999999998864   234422 22111  111111111


Q ss_pred             HHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037164          148 KSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFN-KGYMTMMGLLLKLDDVKGAEKTLRNWTSK  213 (250)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~  213 (250)
                      +......  ..                  .....|+. ..+......+...|+.++|..++++....
T Consensus        82 ~a~~~~~--~~------------------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          82 DFAQGAA--TA------------------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHTTSCC--CE------------------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhh--hh------------------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            1111000  00                  00011222 33444556788899999999999997753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.44  E-value=0.054  Score=36.59  Aligned_cols=50  Identities=8%  Similarity=0.070  Sum_probs=31.6

Q ss_pred             hcchhHHHHHHHHHhcc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          163 FELKDQLYRIWKHYGQT---RKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      |.+.++..+++..+...   .+.+...|..+..++...|++++|...|++...
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33555555555555443   234446667777777777777777777777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.09  E-value=0.39  Score=30.61  Aligned_cols=104  Identities=10%  Similarity=-0.087  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHhhhhhccccccc--------hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhh----cCChhhHHHHHH
Q 037164           18 HGVEQAEIYFDNISKLLRQCLFFG--------VGKAEMVVQEMKDMGFARRTIYCYIMMILNYL----TGNREKIDALML   85 (250)
Q Consensus        18 ~~~~~a~~~f~~~~~~~~~~~~y~--------~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~   85 (250)
                      .++++|.++|....+.......|+        .++|...|++..+.|   ++..+..|-..|..    ..+.++|.++|+
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            356777777776654421111122        778888888887776   34455555555543    456778888888


Q ss_pred             HHHhcCCCCCchhHhhhHHHHHh----cCChhHHHHHHHHHhhCCCC
Q 037164           86 EMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDKIINMTESNPQM  128 (250)
Q Consensus        86 ~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~~~~~m~~~~g~  128 (250)
                      .-.+.|.   +.....|-..|..    ..|.++|.++|++.... |.
T Consensus        84 ~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~-G~  126 (133)
T d1klxa_          84 KACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL-GS  126 (133)
T ss_dssp             HHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC
T ss_pred             hhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC-CC
Confidence            7766653   3333344444443    45677777777776555 44

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.86  E-value=0.18  Score=30.44  Aligned_cols=60  Identities=2%  Similarity=-0.119  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHH
Q 037164           44 KAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPS  104 (250)
Q Consensus        44 ~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~  104 (250)
                      ++.+-++.+...++.|++.+..+-+.+|-|.+|+..|.++|+-.+.. +.++...|.-++.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            34455667777889999999999999999999999999999998865 4445667765553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.84  E-value=0.079  Score=38.81  Aligned_cols=46  Identities=15%  Similarity=0.010  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037164          167 DQLYRIWKHYGQTR---KVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTS  212 (250)
Q Consensus       167 ~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  212 (250)
                      ++++++...+++..   +.+...+..+...|+..|++++|...|+....
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44445555444431   23335556666666666666666666666553

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.46  E-value=2.6  Score=31.55  Aligned_cols=178  Identities=11%  Similarity=0.025  Sum_probs=91.3

Q ss_pred             CCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHH
Q 037164           57 FARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLA  136 (250)
Q Consensus        57 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~  136 (250)
                      ...++..-..++..|-..|.+++...++...... -.++...++.++..|++.+. ++..+.++....  ...+.... .
T Consensus        95 ~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~--~y~~~k~~-~  169 (336)
T d1b89a_          95 IVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWS--RVNIPKVL-R  169 (336)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST--TSCHHHHH-H
T ss_pred             hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccc--cCCHHHHH-H
Confidence            3445555678888999999999999888865432 24566778889999988653 333333333211  22222211 1


Q ss_pred             HH-----HHHHHHHHHHHHhhh--------hc-cCCchhhh----c---chhHHHHHHHHHhccCCCC-----------h
Q 037164          137 VL-----LYMAMTMLKKSEGLI--------AT-KRNSSNAF----E---LKDQLYRIWKHYGQTRKVF-----------N  184 (250)
Q Consensus       137 ~l-----~~~a~~~~~~~~~~~--------~~-~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~-----------~  184 (250)
                      ..     +.++.-++.++....        .+ +..+...|    .   +++...++...+-+. .|+           .
T Consensus       170 ~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~  248 (336)
T d1b89a_         170 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR  248 (336)
T ss_dssp             HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG
T ss_pred             HHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-CHHHHHHHHHHhccC
Confidence            12     444544444443110        00 00000011    1   223333332222111 010           1


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHH
Q 037164          185 KGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLIN  243 (250)
Q Consensus       185 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  243 (250)
                      ..-.-++.-+-+.+++......++...+.+   +..+.++|...|...++++.-++..+
T Consensus       249 ~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         249 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             CCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            111334455555566666666665544333   34689999999999998766555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=90.04  E-value=1.4  Score=27.77  Aligned_cols=100  Identities=11%  Similarity=0.004  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHHHHCCCCccHHHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHh----cCChhHHHH
Q 037164           42 VGKAEMVVQEMKDMGFARRTIYCYIMMILNYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAA----ASDIHGMDK  117 (250)
Q Consensus        42 ~~~A~~~~~~m~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~----~~~~~~a~~  117 (250)
                      .++|...|++..+.|.   ...+..|.  .....+.++|.++++.--+.|.   +..+..|-..|..    ..|.++|.+
T Consensus         9 ~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           9 LKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHHHH
Confidence            5789999999988873   33444443  3456688999999998777763   4444445455543    467899999


Q ss_pred             HHHHHhhCCCCCccHHHHHHH----------HHHHHHHHHHHH
Q 037164          118 IINMTESNPQMVLDFNLLAVL----------LYMAMTMLKKSE  150 (250)
Q Consensus       118 ~~~~m~~~~g~~~~~~~~~~l----------~~~a~~~~~~~~  150 (250)
                      +|++.... |..+.......+          ..+|...|++..
T Consensus        81 ~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_          81 YYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHhhhhcc-CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence            99998776 664443333333          555666666544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.18  E-value=1.7  Score=27.29  Aligned_cols=65  Identities=14%  Similarity=-0.028  Sum_probs=36.6

Q ss_pred             CChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhcCChhHHHHHHHHHHh
Q 037164          182 VFNKGYMTMMGLLLKL---DDVKGAEKTLRNWTSKNLPYD-FGLPSSLIDAHCKNGLLEKAQSLINHAET  247 (250)
Q Consensus       182 ~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  247 (250)
                      ++..|--..--++.+.   .+++.|..++++....+ +.+ ...+--|--+|.+.|++++|.+.++.+++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3333333333444433   34567777777766432 222 23445566677777788888777777665

>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Pectobacterium carotovorum [TaxId: 554]

Probab=86.93  E-value=1.1  Score=24.85  Aligned_cols=63  Identities=11%  Similarity=0.074  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037164          186 GYMTMMGLLLKLDD--VKGAEKTLRNWTSKNLPYDFGLPSSLIDAHCKNGLLEKAQSLINHAETKK  249 (250)
Q Consensus       186 ~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  249 (250)
                      ||..+|.-+...++  .+++..+++.+. .|..+|..+-..|+....+.-..++...+.+-|.+++
T Consensus         1 t~~~il~kl~~g~~Ls~ee~~~~~~~i~-~g~~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~~   65 (69)
T d1khda1           1 THQPILEKLFKSQSMTQEESHQLFAAIV-RGELEDSQLAAALISMKMRGERPEEIAGAASALLADA   65 (69)
T ss_dssp             CCHHHHHHHHTTCCCCHHHHHHHHHHHT-TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            56777877776665  478888888887 5666677777777777777777888888888888775

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.25  E-value=1.2  Score=28.13  Aligned_cols=63  Identities=2%  Similarity=-0.124  Sum_probs=31.6

Q ss_pred             cHHHHHHHHHHHhhcC---ChhhHHHHHHHHHhcCCCCCc-hhHhhhHHHHHhcCChhHHHHHHHHHh
Q 037164           60 RTIYCYIMMILNYLTG---NREKIDALMLEMEEKSINGDQ-FTLGIRPSAYAAASDIHGMDKIINMTE  123 (250)
Q Consensus        60 ~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~gi~p~~-~ty~~li~~~~~~~~~~~a~~~~~~m~  123 (250)
                      .+.|--...-++.++.   +.+++..++++..+.+ +.+. ..+-.|--+|.+.|++++|.+.++.+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3334333334444333   3345666666655432 1121 233445556666677777766666665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.08  E-value=4.4  Score=25.67  Aligned_cols=129  Identities=14%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             HhhcCChhhHHHHHHHHHhcCCCCCchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCcc------HHHHHHH------
Q 037164           71 NYLTGNREKIDALMLEMEEKSINGDQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLD------FNLLAVL------  138 (250)
Q Consensus        71 ~~~~g~~~~a~~~~~~m~~~gi~p~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~------~~~~~~l------  138 (250)
                      +...|..++..+++.+....   .+..-||=+|--...+-+.+.+.++++.+-....+.|-      .++|..+      
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~   88 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   88 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence            45678889999988886554   24556666777777788889999999888554233332      1222111      


Q ss_pred             HHHHHHHHHHHHhhhhccCCchhhhcchhHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037164          139 LYMAMTMLKKSEGLIATKRNSSNAFELKDQLYRIWKHYGQTRKVFNKGYMTMMGLLLKLDDVKGAEKTLRNWTSKNLP  216 (250)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  216 (250)
                      ++.|++++-.-.              +.+.++++.+-+-....+++...-.+-.+|.+.|...+|.+++.+.-.+|..
T Consensus        89 vdlALd~lv~~~--------------kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          89 VNKALDILVIQG--------------KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHTT--------------CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhc--------------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            444444432211              5566777766644455577888888889999999999999999998877764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.93  E-value=4.6  Score=31.76  Aligned_cols=73  Identities=3%  Similarity=-0.220  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHHHHhcCCCC-CchhHhhhHHHHHhcCChhHHHHHHHHHhhCCCCCccHHHHHHH
Q 037164           62 IYCYIMMILNYLTGNREKIDALMLEMEEKSING-DQFTLGIRPSAYAAASDIHGMDKIINMTESNPQMVLDFNLLAVL  138 (250)
Q Consensus        62 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~gi~p-~~~ty~~li~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~~~~l  138 (250)
                      .++..|-..+...|++++|...+.+..+.  .| +...|+.|-..+...|+..+|...|.+....  -+|-...+..+
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL  226 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHH
Confidence            45666677778888888888888866553  44 4478888888888888888888888887654  23444444444