Citrus Sinensis ID: 037185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
QSRSSSRWLAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATSSTSGGSSNFSLKEGAELSSPSSSDSESEFSNSSVKIHRDAPINMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcc
Coil and Loop (DISEMBL)
QSRSSSRWLAENLEEMDRSVKQMQKLIEDgeslskfhrpelTAHIEDFYHLYQSLAERYDHLTGelqknvpsdiplqgsgntksgfaqgsplltpdrkmglhntscqatsstsggssnfslkegaelsspsssdsesefsnssvkihrdapinmdgkelTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLgykrpavmaa
Flexible Loop (DISEMBL)
qsrsssrwLAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQatsstsggssnfSLKEGAELsspsssdsesefsnssvkihrdapinmDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSElhsqiesakrdvnikeadLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVetnlsdrnneVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLheaqergmqseiNQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELiaasessrklVDELRFRVkelenevdrqrmVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA
Low Complexity Region (SEG)
QSRSSSRWLAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQAtsstsggssNFSLKegaelsspsssdsesefsnssVKIHRDAPINMDGKelteeanetyeellGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA
Disordered region (IsUnstruct)
**************************************PELTAHIEDFYHLYQSLAERYDHLTG*****************************************************************************************************TYEELLGRVIQYEDKLRVLNLSLQL***********************************QVFELQNYVRELETRL****FEIERLM**L**THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL*****EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC***********************QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINA*********************************************ELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYK*******
Disordered Region (DISOPRED)
***SSSR*LAENLEEMDRSVKQ************************DFYHLYQSLAERYD*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
QSRSSSRWLAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHN*****************************************KIHRDAPINMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA
Disordered Region (DISPRO)
*****SRWLAENLEEMDRSVKQMQKLIEDGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDI***********************************************************************IH*****NMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYK**A****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QSRSSSRWxxxxxxxxxxxxxxxxxxxxxGESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATSSTSGGSSNFSLKEGAELSSPSSSDSESEFSNSSVKIHRDAPINMDGKELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERxxxxxxxxxxxxxxxxxxxxxxxxxxxxFTLDKAQLQSEMFCLLEKQALLDARxxxxxxxxxxxxxxxxxxxxxKMEITGLHEAQERGMQSEINQLKVEVCERDNRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARSRDNHIGQIEEHSRKLHMEHAELIAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
224128031	545	predicted protein [Populus trichocarpa]	0.926	0.906	0.492	1e-127
255559731	540	Myosin heavy chain, embryonic smooth mus	0.904	0.892	0.447	1e-112
225434325	617	PREDICTED: uncharacterized protein LOC10	0.996	0.860	0.402	1e-102
225448731	539	PREDICTED: uncharacterized protein LOC10	0.898	0.888	0.446	1e-102
255565935	628	RAB6-interacting protein, putative [Rici	0.968	0.821	0.408	1e-101
356553178	623	PREDICTED: uncharacterized protein LOC10	0.969	0.829	0.389	2e-92
356500946	621	PREDICTED: uncharacterized protein LOC10	0.966	0.829	0.380	4e-91
357491507	604	Viral A-type inclusion protein repeat co	0.969	0.855	0.383	1e-89
224145419	613	predicted protein [Populus trichocarpa]	0.951	0.827	0.395	2e-89
449439197	620	PREDICTED: uncharacterized protein LOC10	0.971	0.835	0.366	1e-84

>gi|224128031|ref|XP_002329237.1| predicted protein [Populus trichocarpa] gi|222871018|gb|EEF08149.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 280/569 (49%), Positives = 374/569 (65%), Gaps = 75/569 (13%)

Query: 16  MDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQSLAERYDHLTGELQK 68
           M+RSVKQM KLIE DG SL+K        RP+L + I++F  + QSLAE Y+++T EL  
Sbjct: 1   MERSVKQMLKLIEEDGVSLAKKAEMCRQTRPDLISKIKEFNSMQQSLAECYEYVTTELTN 60

Query: 69  NVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATS-STSGGSSNFSLKEGAEL 127
           ++PS+  +QG  N++SG     PLLTPD+K+G H  S +A S S+ G SS+ SLKEG+E 
Sbjct: 61  SIPSEFDVQGVDNSESGHGHDPPLLTPDQKLGFHKASNRAPSVSSHGASSDLSLKEGSES 120

Query: 128 SSPSSSDSESEFSNSSVKIHRDAPINMDGKELTE-------------------------- 161
            S SSSDSESE  NSS   +   P+N D  EL +                          
Sbjct: 121 FSFSSSDSESESFNSSGNAYYSLPVNTDRSELHKKIIVMGTDLSSMEEKLRMHEEENRDS 180

Query: 162 ----EANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSEL-------------HS 204
               E N  YEELL R+I YE++LR+  + LQLSE++V RLK EL              +
Sbjct: 181 MLNGEENRNYEELLSRIIGYEEELRLTKVKLQLSEDDVTRLKIELEKSVFFRDLSGTLQA 240

Query: 205 QIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQ 264
           Q+E A +D+ ++E DL++ER++V ELQ  V E                    G+ +LQGQ
Sbjct: 241 QLELALKDIQMREDDLQVERKRVLELQKKVAE--------------------GSEELQGQ 280

Query: 265 LKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD 324
           LK+A++++T LNAKL+ E  +VL  QERI   +++LSD ++E+     AL DA+E  +++
Sbjct: 281 LKVAEEEITMLNAKLNTESRRVLDLQERITCYKSDLSDHDHEIK----ALKDAQENLSVE 336

Query: 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSE 384
           KA LQSE+  L EKQ +L+ +L+EW+LQGK +EDK+RQCE EKM++  LH+AQE  +Q E
Sbjct: 337 KAHLQSEILDLSEKQNMLEVKLREWDLQGKFMEDKLRQCEAEKMQMKNLHDAQEIALQGE 396

Query: 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI 444
           I+QLKVE+ +R   +E LNK  DSLK KYDMLMAEKD ++AKVNTL+A+  SRDN I Q+
Sbjct: 397 ISQLKVELIDRGEHVEVLNKKFDSLKSKYDMLMAEKDGMSAKVNTLIADVNSRDNQIRQM 456

Query: 445 EEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL 504
           E H ++LH EH +LIA S+SSRKLVDELR +V ELE EVD QR+ +   AEEKR AIRQL
Sbjct: 457 EGHLQQLHTEHEKLIAGSQSSRKLVDELRLKVVELEKEVDGQRVELSAVAEEKRAAIRQL 516

Query: 505 CFSLEHYRSGYQELRQAFLGYKRPAVMAA 533
           CFSLEHYRSGY+ELR+AFLG+KR +VMA+
Sbjct: 517 CFSLEHYRSGYKELREAFLGHKRHSVMAS 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559731|ref|XP_002520885.1| Myosin heavy chain, embryonic smooth muscle isoform, putative [Ricinus communis] gi|223540016|gb|EEF41594.1| Myosin heavy chain, embryonic smooth muscle isoform, putative [Ricinus communis]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/576 (44%), Positives = 353/576 (61%), Gaps = 94/576 (16%)

Query: 16  MDRSVKQMQKLIE-DGESLSK------FHRPELTAHIEDFYHLYQSLAERYDHLTGELQK 68
           MD++  ++ K+IE DG SL+K        RP+L A IE+F  LY+SLAERYDHL  EL K
Sbjct: 1   MDQTASRVLKMIEQDGASLAKKAEMCKMTRPDLIAEIEEFCSLYRSLAERYDHLNAELYK 60

Query: 69  NVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQA-------------------- 108
           + PS+  +Q +G+     A  +P+LTPD+K+GLH T  Q                     
Sbjct: 61  STPSEFQMQDAGS-----APDTPMLTPDQKLGLHQTGHQVESASSGGASSDLSPKDGSDS 115

Query: 109 --------TSSTSGGSSNFSLKEGAELSSPSSSDSES------EFSNS----SVKIHRDA 150
                    S  S G + +SL        P +SD +       E  N      +K+  +A
Sbjct: 116 SSSSDSESDSFNSSGDAYYSL--------PVNSDRKGLHQKIIELRNGLPIMDIKLQLNA 167

Query: 151 PINMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSEL-------- 202
             N D   L  +  E YEELLGR I YE++LR   L LQLSEEEVARLK EL        
Sbjct: 168 EDNGDCM-LDAQEKENYEELLGRSIMYEEELRDSKLKLQLSEEEVARLKGELEKRESDMV 226

Query: 203 -----HSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEG 257
                  Q+E A  D+ ++EADLE+ER +V ELQ  + +                     
Sbjct: 227 LAETLQGQLELAHTDLRMREADLEVERIRVMELQQGLAD--------------------R 266

Query: 258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA 317
           T++LQG LKLAQ+++  L  KLD E  Q L  QERI + + ++S  ++EV   K+AL +A
Sbjct: 267 TNELQGHLKLAQEEINMLRTKLDSEFWQALDLQERIVQYKNDVSALDDEVKASKLALLNA 326

Query: 318 EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQ 377
           EE F  +KA LQS +  LLE++ +L+ARL++WEL+G++LE+K++QCETEK ++  +++ Q
Sbjct: 327 EENFLAEKAHLQSNISSLLERETMLEARLRDWELKGESLEEKLKQCETEKKDLQLVYDIQ 386

Query: 378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR 437
             G+Q EI++LKVE+ ++   +E +NK +DSLK KYDM+MAEKD +NAK+NTL+A+  SR
Sbjct: 387 RIGLQGEISELKVELGDKGGHLEIVNKNLDSLKFKYDMVMAEKDGMNAKINTLIADLSSR 446

Query: 438 DNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEK 497
           DN IGQ+EE  R++ +E+AELIA SES ++ V+ELR RV ELE EVD+QR  +   AEEK
Sbjct: 447 DNEIGQMEERLRRIRIENAELIAGSESLQRTVNELRLRVVELEKEVDKQRGELSAGAEEK 506

Query: 498 REAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA 533
           REAIRQLCFSLEHYRSGY+EL QAF  +KR AVMA+
Sbjct: 507 REAIRQLCFSLEHYRSGYKELCQAF--HKRHAVMAS 540

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434325|ref|XP_002276254.1| PREDICTED: uncharacterized protein LOC100248527 [Vitis vinifera]

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/589 (40%), Positives = 359/589 (60%), Gaps = 58/589 (9%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+WLA+NLEEMD+SVK+M KLIE DG+S +K        RPEL +H+EDFY +Y+S
Sbjct: 30  SPKNSKWLADNLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEDFYRIYRS 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATSS--- 111
           LAERYDH+TGEL+KN+ SD+  QGSG +  G    S   +PD++     +  +A      
Sbjct: 90  LAERYDHVTGELRKNILSDLQSQGSGISDLGSEPASTCPSPDQRERRRKSGRRAAGFDFF 149

Query: 112 -TSGGSSN--FSLKEGAELSSPSSSDSESEFSNSSVKIHRDAPI----NMDGKELTEEAN 164
             SGGSS+  ++  + +   S S S S+    N+ + +     +    N D + L    N
Sbjct: 150 LGSGGSSSDLYNKGDESSSLSDSESGSDDSSVNNYLGVPGKQQMQQEENAD-RSLRGTGN 208

Query: 165 ETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQ-------------IESAKR 211
              E+LLG++  YE++LR     +QLSEEE+ RLK+EL                +E   R
Sbjct: 209 GNCEDLLGKIAGYEEELRAAKEKIQLSEEEIVRLKTELQKYGPLNFTNNFQAELVELPPR 268

Query: 212 DVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKEL---------------- 255
           D+ ++E++LE  ++Q  E +     LE   S+   +I+ L++EL                
Sbjct: 269 DIKMQESELEFAKKQASEFEEGAVGLEVDCSDPGLKIQSLVEELRITKERLQGSEKEIAT 328

Query: 256 -----------EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRN 304
                      E    +Q QL+L   D+    AKLD E+ +V K QER+ + +T+LSDR 
Sbjct: 329 LIDELASRGSSESISHMQEQLELTHKDIAMWKAKLDREKREVSKLQERVGRYKTSLSDRE 388

Query: 305 NEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE 364
           +E+ ELK  +SDA+  F L+K+ L +++  LL+ Q+ L+ +LKEWEL+ ++LE++I+Q +
Sbjct: 389 HEIRELKEVISDADHNFELEKSLLMAKISKLLDDQSHLEEKLKEWELRCQSLEEEIKQVD 448

Query: 365 TEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEIN 424
            EK E     E QE+  ++EI QLK +  E  +RI  LNK +D+L LK+D LM+E+DE++
Sbjct: 449 AEKRETKARLEEQEKLWKTEIEQLKADTAESGDRINDLNKSLDALNLKHDTLMSERDELS 508

Query: 425 AKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484
           A+V+ L++E  SRD+   Q++++  +L +E AEL+A +  +R+LV+ELR + K+LE EV+
Sbjct: 509 ARVHALISELSSRDDQKIQMDKYLHQLRIEQAELVAGAGDARRLVEELRSKAKQLEEEVE 568

Query: 485 RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA 533
           RQ+ ++ +AAEEKREAIRQLCFSLEHYR+ Y  LRQAF  +KRPAV+ +
Sbjct: 569 RQKGLVSEAAEEKREAIRQLCFSLEHYRNDYNRLRQAFTVHKRPAVLTS 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448731|ref|XP_002275508.1| PREDICTED: uncharacterized protein LOC100260478 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 258/578 (44%), Positives = 359/578 (62%), Gaps = 99/578 (17%)

Query: 16  MDRSVKQMQKLIEDG-------ESLSKFHRPELTAHIEDFYHLYQSLAERYDHLTGELQK 68
           M++SVKQM KLIE+G         +    RPEL AH+E+FY +YQ+LAER DHLTGEL K
Sbjct: 1   MEQSVKQMLKLIEEGGDSFEEKAEMYNRKRPELVAHVEEFYRMYQALAERCDHLTGELFK 60

Query: 69  NVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATS-----STSGGSSNFSLKE 123
           + PS +  Q               +TPD+K+G+H +S Q+ +     S+   SS  SLKE
Sbjct: 61  SNPSMLQAQ---------------VTPDQKLGVHRSSHQSVNMDSPLSSGSASSELSLKE 105

Query: 124 GAELSSPSSSDSESEFSNSSVKIHRDAPINMDGK-------------ELTEE-------- 162
           GA+  S SSSDSESE   SS+  +   P N DGK             ++TE+        
Sbjct: 106 GADSFSSSSSDSESESITSSINRYLGTPSNGDGKGLQTMLPSMKEKLQVTEDKDADCIPK 165

Query: 163 --ANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSEL----------HSQIESAK 210
              + +YEELLG++ +Y  KL       + SEEE+ARL  EL           +Q+ESA 
Sbjct: 166 VGTHASYEELLGKITEYSQKL-------EFSEEEIARLNCELKKNESATGTLQAQLESAW 218

Query: 211 RDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI-----------ERLMKELEGTH 259
           R++ ++EA+LE+E+RQV ELQ    ELE R+SES+ +I           +RLM   E   
Sbjct: 219 REIEMQEANLELEKRQVLELQKQTAELENRVSESDHKICMLEEELEETKKRLMGSEEENE 278

Query: 260 QLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETNLSDRNNEVAELKIALS 315
           +L+ +L    ++++ +  +L+ +R    M   + Q+ I K    +SD + EV  L  AL 
Sbjct: 279 KLKHELT---NEISVVKHQLEDQRALAVMLETQLQDSIIKHMAFVSDHDREVESLNAALH 335

Query: 316 DAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHE 375
           +A+E F+L++AQLQS++  L ++  LL+ RL+EW                ++ME+ GLHE
Sbjct: 336 NAQENFSLERAQLQSDISSLSKQVVLLETRLEEWR--------------AKEMEMKGLHE 381

Query: 376 AQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR 435
           AQE  +  EI QLK E+ ER + ++ALNK +D+LK+ YDMLMAEKDE++A+V+TL+A+  
Sbjct: 382 AQETVLLGEIEQLKAELSERGDIVQALNKNLDALKVTYDMLMAEKDELSARVDTLIADVN 441

Query: 436 SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAE 495
           S DN I Q+E+H R+L +E  ELIA +ES+RKLVDEL +RVKELE EV+RQR+VI D AE
Sbjct: 442 SWDNQIQQLEDHLRQLRIERVELIAGTESARKLVDELSWRVKELEREVERQRVVISDRAE 501

Query: 496 EKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA 533
           EKREAIRQLCFSLEHYRSGYQELRQAF+G+KR  ++A+
Sbjct: 502 EKREAIRQLCFSLEHYRSGYQELRQAFIGHKRLPILAS 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565935|ref|XP_002523956.1| RAB6-interacting protein, putative [Ricinus communis] gi|223536803|gb|EEF38443.1| RAB6-interacting protein, putative [Ricinus communis]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 251/615 (40%), Positives = 348/615 (56%), Gaps = 99/615 (16%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+WLAENLEEMDRSV++M KLIE DG+S +K        RPEL + +E+FY +Y+S
Sbjct: 30  SPKNSKWLAENLEEMDRSVRRMLKLIEEDGDSFAKKAEMYYQKRPELVSLVEEFYRMYRS 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSG--FAQGSPLLTPDRKMGLHNTSCQATSS- 111
           LAERYDH+TGEL+KN+PSD+  Q SG +  G       P   P++++       +A    
Sbjct: 90  LAERYDHVTGELRKNIPSDLQSQSSGISDIGSELTSTWPSPVPEQRLSHRKPGNRAAGFD 149

Query: 112 ---TSGGSSNFSLKEGAELSSPSSSDSESEFSNSSVKIHRDAPINMDGKELTEEA----- 163
               SGGSS+   KEG E  S + +DSE E  +SSV  +     N     L+ +      
Sbjct: 150 FFLGSGGSSSDLQKEGDE--SSTLTDSEPESDDSSVNNYSVLLGNGGDNALSRKVIELEI 207

Query: 164 -------------------------NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARL 198
                                    NE +E LL R+  YE +L++ N S+Q SEEEVARL
Sbjct: 208 ELREMKDRLQMQQEDNGDGSYRGARNENFEYLLARIAGYEQELKIANQSIQHSEEEVARL 267

Query: 199 KSELHSQ-------------IESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESN 245
             ELH               I S   +V  ++++LE E  Q  +L+     LE    +S+
Sbjct: 268 NIELHRYKSLEAVNSLQKEFISSKDENVKTEDSELESEITQASKLKENTDGLEAGTVDSD 327

Query: 246 FEIERLMKEL---------------------------EGTHQLQGQLKLAQDDVTTLNAK 278
            +I  L  EL                           E    LQ QL LA  D+ T   +
Sbjct: 328 SKIRALTDELRITKEKLQYAEKEIASLKLQLESNRPSEKVDNLQDQLILAHKDINTWKTR 387

Query: 279 LDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEK 338
           L+ E+ +V K QERIA++ T+LSDR++E+ +LK+A+SDAE+K   +KAQ+++E+  LLE+
Sbjct: 388 LNAEKREVSKLQERIARLRTSLSDRDHEIRDLKLAVSDAEQKIFPEKAQIKAEISKLLEE 447

Query: 339 QALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNR 398
           +  LD +L+EWE + + LED IR+ +TEK E    H        SEINQLK E  ERD  
Sbjct: 448 RTSLDEQLREWESRCRCLEDDIRKLQTEKSETEERH-------YSEINQLKAETVERDCH 500

Query: 399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL 458
           IE LNK +++LKL       E+D +NA+V  L A+  SRD+ I Q++ H ++LHMEH EL
Sbjct: 501 IENLNKSLNALKL-------ERDALNAQVVLLKADIISRDDQINQMDNHLQQLHMEHVEL 553

Query: 459 IAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQEL 518
           IA +E +RKLV  LR +  +LE EV+RQ++ I + AEEKREAIRQLCFSLEHYR+GY  L
Sbjct: 554 IAGAEEARKLVYTLRSKANDLEKEVERQKIAITEGAEEKREAIRQLCFSLEHYRNGYHRL 613

Query: 519 RQAFLGYKRPAVMAA 533
           R+AF+ +KR  V+  
Sbjct: 614 RKAFVEHKRLPVLVT 628

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553178|ref|XP_003544935.1| PREDICTED: uncharacterized protein LOC100819525 [Glycine max]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 237/609 (38%), Positives = 345/609 (56%), Gaps = 92/609 (15%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+WL ENLEEMDRSVK+M KLIE D +S +K        RPEL A +E+FY +Y++
Sbjct: 30  SPKNSKWLFENLEEMDRSVKRMLKLIEEDADSFAKKAEMYYQKRPELVALVEEFYRVYRA 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGS--PLLTPDR----KMGLHNTSCQA 108
           LAERYDH+TGEL+KN+PSD+  QGSG + +G    S  P  TP R    K G      + 
Sbjct: 90  LAERYDHVTGELRKNIPSDLQSQGSGISDAGSEPSSTWPSPTPKRGRRFKSGTRAAGFEY 149

Query: 109 TSSTSGGSSNFSLKEGAELSSPSSSDSESEFS--NSSVKIHR---DAPINMDGKELTEEA 163
              TSG  ++   K+G E S+ + S+ ES+ S  N+ +   R   D  IN    EL  E 
Sbjct: 150 FLGTSGNGTDVYQKDGDESSTLTDSEEESDDSSVNNYLGFSRNGSDLGINRRIMELETEL 209

Query: 164 NETYEELL-----------------------GRVIQYEDKLRVLNLSLQLSEEEVARLKS 200
            E  E+L                         ++  YE +L  +N  L+LSEEE+ +LK 
Sbjct: 210 REVKEKLWMQEEEHVDGSSRGSRSENTEDVYTKINAYEQELMTVNEKLRLSEEEITKLKI 269

Query: 201 ELH-----------SQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIE 249
           EL            +  ES+    +I E    +E + + EL+  +  ++  L + N EIE
Sbjct: 270 ELEKYRLFNTENLEAGFESSSMKEHINEGGEALEHKTI-ELEGSIDGVDKELFDQNGEIE 328

Query: 250 RLMKEL-------------------------EGTHQLQGQLKLAQDDVTTLNAKLDYERM 284
            L++EL                         E   QL  QL+LA+ D++T   K + E+ 
Sbjct: 329 TLVRELRITKENLKASEMQITSLKFEANKSSERIQQLHDQLELARKDISTWKTKFNSEKR 388

Query: 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDA 344
           +  K  ER+A++ T+LSDR++E+ +LK A+SD E+K   +KAQL+SEM  +L+K+  L+ 
Sbjct: 389 ESTKLHERLARLRTSLSDRDHEIRDLKTAVSDTEQKIFPEKAQLKSEMSKVLDKRTHLEE 448

Query: 345 RLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK 404
           R++EWE +G+  ED+IR+ ++EKME        E  ++ EI  LK ++ +R++ I+ LN 
Sbjct: 449 RIREWESRGRCFEDEIRRIQSEKMET-------EEALKGEIQLLKADIEQRESNIKDLNT 501

Query: 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASES 464
           I+D+LKL       EKD ++ +V +L  E  SRD  I  +  H  +LHMEH +LIA  + 
Sbjct: 502 ILDTLKL-------EKDNLHVEVYSLKEEVNSRDGRIEHLNTHLNQLHMEHVQLIAGMDE 554

Query: 465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLG 524
           ++K V+EL+ + K+LE EV+RQ+ VIL+  EEKREAIRQLCFSLEHYR GY  LRQ  +G
Sbjct: 555 AQKQVEELKSKAKQLEEEVERQKTVILEGEEEKREAIRQLCFSLEHYRDGYNMLRQHVMG 614

Query: 525 YKRPAVMAA 533
           +KR  V+A 
Sbjct: 615 HKRVPVLAV 623

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500946|ref|XP_003519291.1| PREDICTED: uncharacterized protein LOC100816215 [Glycine max]

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 346/609 (56%), Gaps = 94/609 (15%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+WL+ENLEEMDRSVK+M KLIE D +S +K        RPEL A +E+FY +Y++
Sbjct: 30  SPKNSKWLSENLEEMDRSVKRMLKLIEEDADSFAKKAEMYYQKRPELVALVEEFYRVYRA 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLH-NTSCQATS--- 110
           LAERYDH+TGEL+KN+PSD+  QGSG + +G    S   +P  K G    +S +A     
Sbjct: 90  LAERYDHVTGELRKNIPSDLQSQGSGISDAGSEPSSTWPSPTPKRGGRLKSSTRAAGFEY 149

Query: 111 --STSGGSSNFSLKEGAELSSPSSS---------DSESEFS--NSSVKIHRDA-PINMDG 156
              +SG  ++   K+G E S+ + S         ++ S FS   S + I+R    +  + 
Sbjct: 150 FLGSSGNGTDVYQKDGDESSTLTDSEEESDDSSVNNYSGFSRNGSDLGINRRIMELETEL 209

Query: 157 KELTEE----------------ANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKS 200
           +E+ E+                 NE  E+L  ++  YE +L  +N  L+LSEEE+ + K 
Sbjct: 210 REVKEKLWMQEEEHADGSTRGSRNENTEDLYTKINAYEQELMTVNEKLRLSEEEITKQKI 269

Query: 201 ELH-----------SQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIE 249
           EL            +  ES+    +I E     E  ++ E++  +  ++  L + N EIE
Sbjct: 270 ELQKYRLFNTENLEAGFESSLTKKHINEGG---EAHKMIEVEGSIDGVDKELFDQNGEIE 326

Query: 250 RLMKEL-------------------------EGTHQLQGQLKLAQDDVTTLNAKLDYERM 284
            L +EL                         E   QL  QL+LA+ D++T   K + E+ 
Sbjct: 327 TLARELRITKENLKASEMQITSLKFEANKSSERIQQLHDQLELARKDISTWKTKFNSEKR 386

Query: 285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDA 344
           +  K  ER+A++ T+LSDR++E+ +LK  +SDAE+K   +KAQL+SEM  +LE++  L+ 
Sbjct: 387 ESTKLHERLARLRTSLSDRDHEIRDLKTEVSDAEQKIFPEKAQLKSEMSKVLEERTHLEE 446

Query: 345 RLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK 404
           +++EWE +G+  ED IR+ ++EKME+       E  ++ EI  LK  + +R+N I+ LN 
Sbjct: 447 QIREWESRGRCFEDDIRRIQSEKMEM-------EEALKGEIQLLKAGIEQRENNIKELNT 499

Query: 405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASES 464
            +D+LKL       EKD ++ +V +L  E  SRD  I  +  H  +LH+EH +LIA  E 
Sbjct: 500 SIDTLKL-------EKDNLHVEVGSLKEEVNSRDGRIEHLNSHLNELHVEHVQLIAGMEE 552

Query: 465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLG 524
           + K V+EL+ + K+LE EV+RQR VIL+ AEEKREAIRQLCFSLEHYR GY  LRQ  +G
Sbjct: 553 AHKHVEELKSKAKQLEEEVERQRTVILEGAEEKREAIRQLCFSLEHYRDGYNMLRQHVMG 612

Query: 525 YKRPAVMAA 533
           ++R  V+AA
Sbjct: 613 HRRVPVLAA 621

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491507|ref|XP_003616041.1| Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|355517376|gb|AES98999.1| Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula]

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 226/590 (38%), Positives = 345/590 (58%), Gaps = 73/590 (12%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+WL ENLEEMDR+VK+M KLIE D +S +K        RPEL A +E+FY  Y+S
Sbjct: 30  SPKNSKWLFENLEEMDRNVKRMLKLIEEDADSFAKKAEMYYKKRPELVALVEEFYRGYRS 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPD---RKMGLHNTSCQATSS 111
           LAERYDH+TGEL+KNV SD+  QGSG + +G    S L +P+   RK             
Sbjct: 90  LAERYDHVTGELRKNVQSDLQSQGSGFSDTGSEPPSTLPSPNVTHRKSSNRAAGFDFFLG 149

Query: 112 TSGGSSNFSLKEGAELSSPSSSDSESEFSNSSVKIHR-------DAPINMDGKELTEEAN 164
           T G +S+ S K+G + SS + + SE E  +SSV  +        D  +N    EL  E  
Sbjct: 150 TGGNASDISQKDGEDESS-TMTGSEDESDDSSVNNYSAFSRNGTDPGMNRRINELENELR 208

Query: 165 ETYEELL-------------------------GRVIQYEDKLRVLNLSLQLSEEEVARLK 199
           E  E+L                           ++  YE +L ++N  L+LSEEE+ +L+
Sbjct: 209 EVKEKLWTQEGEHAEVSVSSSGATHENADDVYAKINAYEQELMIVNEKLRLSEEEITKLR 268

Query: 200 SEL--HSQIESAKRDVNIK---EADLEMERRQVFE-------LQNYVRELETRLSESNFE 247
           +EL  +  ++S   DV ++   E  ++   +++FE       L+  +R  +  L  S  +
Sbjct: 269 TELENYKSLDSRNMDVGVELEVEGSVDGVDKELFESSGGTASLREELRITKENLKASETQ 328

Query: 248 IERLMKELEGT----HQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR 303
           +  L  E+  +     QL+ QL  A+ DV T   K + E+ +  K QER+A+++T+LSDR
Sbjct: 329 VASLNTEVNKSSDRIQQLKDQLDSAKKDVATWKTKFNSEKRESTKLQERLARLKTSLSDR 388

Query: 304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC 363
           ++E+ +LK A+SDAE+K   +KA L++EM  LLE+Q  L   ++EWE +G++ E++IR  
Sbjct: 389 DHEIRDLKTAVSDAEQKIFPEKANLKAEMSKLLEEQTHLKELIREWESRGRSFEEQIRNI 448

Query: 364 ETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEI 423
           ++EK+E+       E  +++ I  LK E+ +R+N I+ LN  +D+LKL       EKD +
Sbjct: 449 QSEKIEM-------EAELKNGIQLLKAEIEQRENNIKDLNVSLDNLKL-------EKDNL 494

Query: 424 NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV 483
           N +V +L  +  SRD  IG ++ H   LH+EH +LI++ E + + V+E++ + K LE +V
Sbjct: 495 NVEVGSLKEDVNSRDGRIGSLDRHLNDLHIEHVQLISSLEEACRQVEEIKTKAKNLEEQV 554

Query: 484 DRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAVMAA 533
           +RQ+  IL+AAEEKREAIRQLCFSLEHYR+ Y  L+Q F+G+KR  ++AA
Sbjct: 555 ERQKTEILEAAEEKREAIRQLCFSLEHYRNNYHMLKQHFIGHKRVPILAA 604

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145419|ref|XP_002325636.1| predicted protein [Populus trichocarpa] gi|222862511|gb|EEF00018.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 241/610 (39%), Positives = 333/610 (54%), Gaps = 103/610 (16%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +S+W  ENLEEMD+SVK+M KLIE DG+S +K        RPEL +H+E+FY +Y+S
Sbjct: 29  SPKNSKWHTENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRS 88

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPL--LTPDRKMGLHNTSCQATSST 112
           LAERYDH+T EL+K++PSD+  QGSG +   F   SP   L P R       +       
Sbjct: 89  LAERYDHVTEELRKSIPSDLQSQGSGISDVIFEPPSPARELKPSRLKPGPRAAGFDFFLG 148

Query: 113 SGGSSNFSLKEGAELSSPSSS-----------------------------DSESEFSNSS 143
           SGGS +   KE  ELS+ + S                             D E E   + 
Sbjct: 149 SGGSGDRHHKEVDELSTLTDSESESDDSSVNNYSGLSGNSGDQGLSRRIIDLEIELRETK 208

Query: 144 VKIHRDAPINMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH 203
            K+      ++DG       NE  E++L  +   E  L + N  L+LSEEEV RL +EL 
Sbjct: 209 EKLRMQQDESVDGS-FRGVRNEDSEDVLAELTGCERDLTIANEELRLSEEEVTRLNTELQ 267

Query: 204 SQIES-------------AKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIER 250
               S             A+  V  +E +LE E  Q   LQ  +   E    +SN +I+ 
Sbjct: 268 KYRSSEVSVGLQSEFASPAESKVTTREVELEFEVNQASHLQQRIGGSEAETLDSNVKIQA 327

Query: 251 LMKEL---------------------------EGTHQLQGQLKLAQDDVTTLNAKLDYER 283
           LM+EL                           E  + LQ QL LA  ++ TL  KL+ E+
Sbjct: 328 LMEELRIAKERLHVSEKEITTLKKQLEGGGPSEKINNLQDQLALAHMEINTLKNKLNAEK 387

Query: 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343
            +V K QER A+++TNLSDR+ EV +LKIA+SDAE K   +KAQ+++E+  L+E+   L+
Sbjct: 388 REVSKLQERTARLKTNLSDRDREVRDLKIAVSDAELKIFPEKAQIKAEISKLIEEGTCLE 447

Query: 344 ARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN 403
            RLKE E + ++LED IR  + EK E   + E  ER    EI +LK +  ERD+RI++  
Sbjct: 448 ERLKEQESRCRSLEDGIRMFQAEKAE---MQETLER----EIQKLKEDTAERDSRIKS-- 498

Query: 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASE 463
                          E+DE+N K  TL AE  SRDN + Q+++H ++L MEH +L+A +E
Sbjct: 499 ---------------ERDELNEKAITLKAEVTSRDNPVNQMDKHLQQLRMEHVKLLAGAE 543

Query: 464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL 523
            +RKL+DELR + K+LE EV+RQR++IL+ AEEKREAIRQLC +LEHYR+ Y  LRQAF 
Sbjct: 544 EARKLMDELRSKAKDLEGEVERQRILILEGAEEKREAIRQLCLTLEHYRNSYHTLRQAFA 603

Query: 524 GYKRPAVMAA 533
           G+K   V+A 
Sbjct: 604 GHKGVPVLAT 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439197|ref|XP_004137373.1| PREDICTED: uncharacterized protein LOC101208541 isoform 1 [Cucumis sativus] gi|449439199|ref|XP_004137374.1| PREDICTED: uncharacterized protein LOC101208541 isoform 2 [Cucumis sativus] gi|449528361|ref|XP_004171173.1| PREDICTED: uncharacterized LOC101208541 isoform 1 [Cucumis sativus] gi|449528363|ref|XP_004171174.1| PREDICTED: uncharacterized LOC101208541 isoform 2 [Cucumis sativus]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 339/605 (56%), Gaps = 87/605 (14%)

Query: 2   SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSKF------HRPELTAHIEDFYHLYQS 54
           S  +SRWL ENLEEMDRS+K+M KLIE D +S +K        RP L +H+E+FY +Y+S
Sbjct: 30  SPKNSRWLTENLEEMDRSIKRMLKLIEEDADSFAKKAEMYYQKRPVLISHVEEFYRMYRS 89

Query: 55  LAERYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATS---- 110
           LAERYDH+TGEL+KN+PSD+  QGSG +  G    S   +PD+++G   +  +A      
Sbjct: 90  LAERYDHVTGELRKNIPSDLQSQGSGISDLGSEPPSTWPSPDQRLGRRKSGPRAAGFDFF 149

Query: 111 -STSGGSSNFSLKEGAELSSPSSSDSESEFSNSSVKIHRDAPINMDGKELTEEANETYEE 169
             + G +S+   KEG E SS + S+ ES+ S+ +     D  +N    EL  E  E  E+
Sbjct: 150 LGSGGSNSDTCQKEGDESSSLTESEPESDDSSVNNYSGGDQGLNRKMIELEIELREAKEK 209

Query: 170 L------------------------LGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQ 205
           L                          R+  YE++LR  N  L++S+ ++ RLKSEL   
Sbjct: 210 LRMKADNAEGSFPFKGAADENSDYVFARIAGYEEELRNANEKLRISDVQIMRLKSELQKY 269

Query: 206 IESA-KRDVNIKEADLEMERRQVFE---------------------------LQNYVRE- 236
            ES   + + ++     ME  Q  E                           ++  V E 
Sbjct: 270 RESVMTKGLQVESLSDTMEETQRHEDGVPLVINQESEVDEHHRGSGADHAITVEGLVEEQ 329

Query: 237 --LETRLSESNFEIERLMKELEGTH------QLQGQLKLAQDDVTTLNAKLDYERMQVLK 288
              + RL  S  E+ +L  ELE          LQ +L+ A+ D TT  AKL  ER +V K
Sbjct: 330 KITKERLEISQKELSKLKLELENNRSPEKICHLQNELEAARKDTTTWKAKLSAERREVSK 389

Query: 289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE 348
            QERI++++ +LSDR++E+ +LK+A+SDAE+K   +KAQ+++EM  LLE+Q +L  +++E
Sbjct: 390 LQERISRLKASLSDRDHEIRDLKLAVSDAEQKIFPEKAQVKAEMSKLLEEQTVLMEQVRE 449

Query: 349 WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDS 408
            E + + LED+IR+ + EK+++       E  +  EI +L+  + E+   +E     M+ 
Sbjct: 450 SEHRARLLEDEIRKIKGEKVDL-------EERLNGEIERLETTIVEK---VEC----MEY 495

Query: 409 LKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKL 468
            K   + L +E+D++  ++  L  + RS+D  +  I +H  KL  E  EL++  + + K+
Sbjct: 496 FKNGLNDLESERDQLQDEIVALKEKLRSKDKQVDDIRKHVEKLERERVELVSGIDKADKV 555

Query: 469 VDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRP 528
            ++LR R KELE EV++QR++I++ AEEKREAIRQLCFS+EHYRSGY  LR+ F+G KR 
Sbjct: 556 AEKLRLREKELEGEVEKQRILIMEGAEEKREAIRQLCFSIEHYRSGYHMLREVFIGQKRV 615

Query: 529 AVMAA 533
            V+A+
Sbjct: 616 PVLAS 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
TAIR|locus:2064387	517	NET4B "AT2G30500" [Arabidopsis	0.469	0.483	0.328	3.2e-38
TAIR|locus:2161268	558	NET4A "Networked 4A" [Arabidop	0.497	0.474	0.280	6.6e-38
TAIR|locus:2156794	432	AT5G05180 [Arabidopsis thalian	0.542	0.668	0.343	2e-31
TAIR|locus:2103187	319	AT3G10880 "AT3G10880" [Arabido	0.523	0.874	0.302	1.8e-21
TAIR|locus:2007569	1733	NET1D "AT1G03080" [Arabidopsis	0.123	0.038	0.479	5.2e-19
TAIR|locus:2014240	555	AT1G64330 "AT1G64330" [Arabido	0.590	0.567	0.227	7.4e-18
TAIR|locus:2130210	1710	NET1B "Networked 1B" [Arabidop	0.120	0.037	0.464	1.3e-15
TAIR|locus:2014245	476	AT1G64320 "AT1G64320" [Arabido	0.613	0.686	0.254	1.7e-14
TAIR|locus:2132348	1111	NET1C "AT4G02710" [Arabidopsis	0.120	0.057	0.450	2e-14
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.579	0.194	0.216	3.6e-14

TAIR|locus:2064387 NET4B "AT2G30500" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
 Identities = 87/265 (32%), Positives = 144/265 (54%)

Query:   177 YEDKLRVLNLSLQL-----SEEEVARLKSELHSQIESAKRD-VNIKEADLEMERRQVFE- 229
             +ED++  L   LQ      +E+ +   +  +    E  K D V  K   LE E     E 
Sbjct:   216 HEDEIANLKNQLQSFMSFDTEDHLGAEQKSVDLDKEDTKEDAVATKVLALEEELSIAKEK 275

Query:   230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKF 289
             LQ++  E ET   ++  EI +  +E      LQ +L+LAQ D  T   KL+ E+ +VLK 
Sbjct:   276 LQHF--EKETYSLKNELEIGKAAEEK--LKSLQHELELAQRDADTYINKLNAEKKEVLKL 331

Query:   290 QERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349
             QER+A V+T+L DR+NE+  LK A+SDAE+K   +KAQ++ EM  +LE+++ L  +L+E 
Sbjct:   332 QERLAMVKTSLQDRDNEIRALKTAVSDAEQKIFPEKAQIKGEMSKMLEERSQLGEQLREL 391

Query:   350 ELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409
             E   + ++++  + ETE+ ++ G  E +  GM+ E N L+ E+ +R+ +I+   K M+ L
Sbjct:   392 ESHIRLIKEE--KAETEE-KLRGGTE-KISGMRDESNVLREEIGKREEKIKETEKHMEEL 447

Query:   410 KLKYDMLMAEKDEINAKVNTLMAEA 434
              ++   L     E+  +V      A
Sbjct:   448 HMEQVRLRRRSSELTEEVERTRVSA 472

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2161268 NET4A "Networked 4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 79/282 (28%), Positives = 149/282 (52%)

Query:   178 EDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRD------VNIKEADLEM--ERRQVFE 229
             E +L+ +N  LQ SE+++  LKS+L   + S   D       + +E D+E   E  ++  
Sbjct:   250 EQELKDVNEKLQNSEDQIYILKSQLARYLPSGLDDEQSEGAASTQELDIETLSEELRITS 309

Query:   230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKF 289
             L+  +RE E +      E+E+   +      LQ  L+ AQ +     +K   ++ +V+K 
Sbjct:   310 LR--LREAEKQNGIMRKEVEKSKSDDAKLKSLQDMLESAQKEAAAWKSKASADKREVVKL 367

Query:   290 QERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW 349
              +RI+ ++++L+ R++E+ +LK ALSDAEEK   +KAQ+++++  LLE++   D + KE 
Sbjct:   368 LDRISMLKSSLAGRDHEIRDLKTALSDAEEKIFPEKAQVKADIAKLLEEKIHRDDQFKEL 427

Query:   350 ELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL 409
             E   + LED+ R+   EK+E       +E  ++SEI  L +E  E+   IE L++ +  L
Sbjct:   428 EANVRYLEDERRKVNNEKIE-------EEEKLKSEIEVLTLEKVEKGRCIETLSRKVSEL 480

Query:   410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL 451
             + +   L +E    + +   +  E   +   + ++ E  R++
Sbjct:   481 ESEISRLGSEIKARDDRTMEMEKEVEKQRRELEEVAEEKREV 522

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2156794 AT5G05180 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 111/323 (34%), Positives = 179/323 (55%)

Query:   219 DLEMERRQVFE--LQNYVR---ELET---RLSESNFEIERLMKELEGTHQ-------LQG 263
             DL  E++  +E  ++ YV+   EL T   +L E   EIE+L KE E           L+G
Sbjct:    89 DLSPEKQMSYEELMKKYVQCEEELRTTSLKLQEFEQEIEKL-KETEKKESVVLFGEYLRG 147

Query:   264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE-EKFT 322
             + ++AQ ++   +  ++ ER +VL+ Q ++  +ET LSD + +   L   +++ E  +  
Sbjct:   148 EREIAQGEIAIRDIAIETERKRVLEVQRQVVDLETELSDLSFKFEHL---VNEHEVSRDC 204

Query:   323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQ 382
             LD +   SE+  L  ++ L D + + + ++   L D+I+  E EKME+    + +E  +Q
Sbjct:   205 LDVSF--SEISKL--REMLCDCQ-QNFSIEKTKLVDQIKHSEAEKMEM----QRKEVELQ 255

Query:   383 SEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG 442
             +EI+ LK ++  R   IEALNK  D  KL+YDMLMAEKD + A+V+ L AE RSRD  I 
Sbjct:   256 AEISALKTDLATRGEHIEALNKDFDKHKLRYDMLMAEKDGVCAEVDNLKAEMRSRDIQIQ 315

Query:   443 QIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIR 502
             Q+EE   +L  +  EL++ S +++  V+EL+  VKELE EV+ Q        EE R  + 
Sbjct:   316 QMEEQLNQLVYKQTELVSESGNAKNTVEELKAVVKELEIEVELQSKA-KKTVEELRATVW 374

Query:   503 QLCFSLEHYRS----GYQELRQA 521
             ++    E  R+    G +E R+A
Sbjct:   375 EMEKHAELQRNAISQGEEEKREA 397

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2103187 AT3G10880 "AT3G10880" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 93/307 (30%), Positives = 163/307 (53%)

Query:   218 ADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQ------LQGQLKLAQDD 271
             AD+  E  Q   +Q  +R +E    ES  +   L + L  T+       L G LKL    
Sbjct:    26 ADILTEINQ--NVQQMLRMIEDSKPESTEKFLYLYQSLGETYNDLNQELLNGLLKLPCSL 83

Query:   272 VTTLNAKLDYERMQVLKFQERIAKVET-N---LSDRNNEVAELKIALSDAEEKFTLDKAQ 327
             VT++ A   ++  +    +       + N   +S  ++E ++  + L+D  EK   D A 
Sbjct:    84 VTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVSTTSSEKSQ-SLKLNDEVEK--KDSAF 140

Query:   328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC-ETEKMEITGLHEAQERGMQSEIN 386
             L ++MFC     A L+   +E E +  A+E + R   + E      +++ ++  ++SE++
Sbjct:   141 LLADMFC-----AELETARRELEARNIAIETEKRYVVDLESKLSDSVYKIEK--LESELD 193

Query:   387 QLKVEVCERDNRIEALNKIMDSL-KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIE 445
             ++K   C   +  E ++K+M+ L + K +    + D  +  +++L AE RSR+  I Q+E
Sbjct:   194 EVKE--CLGVSEAE-VSKLMEMLSECKNEKSKLQTDNADDLLDSLRAELRSREIQIEQME 250

Query:   446 EH-SRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL 504
             E+ ++ L +   E+ + SE+ + +V+ELR +V+ LE +V+ QR VI +  EEKREAIRQL
Sbjct:   251 EYLNQVLCLNETEIKSESETDKNIVEELRAKVEVLEKQVELQRNVITEREEEKREAIRQL 310

Query:   505 CFSLEHY 511
             CFSL+HY
Sbjct:   311 CFSLDHY 317

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query:     2 SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSK----FH--RPELTAHIEDFYHLYQS 54
             S  +S+WL ENL +MD  VKQM K+IE D +S ++    ++  RPEL   +E+FY  Y++
Sbjct:    21 SPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRA 80

Query:    55 LAERYDHLTGELQ 67
             LAERYDH TG ++
Sbjct:    81 LAERYDHATGVIR 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2014240 AT1G64330 "AT1G64330" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
 Identities = 77/338 (22%), Positives = 151/338 (44%)

Query:   192 EEEVARLKSELHSQIESAKR---DVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI 248
             E E+A    +  S +E   R     N  EA+LE E+++   L N + +++  L E     
Sbjct:   215 EAELASKAKDHESTLEEVNRLQGQKNETEAELEREKQEKPALLNQINDVQKALLEQEAAY 274

Query:   249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVA 308
               L +E +   Q+ G  +  +  +  L       R  + ++  ++ + E  + +   +VA
Sbjct:   275 NTLSQEHK---QINGLFEEREATIKKLTDDYKQAREMLEEYMSKMEETERRMQETGKDVA 331

Query:   309 ELKIALSDAEEKFTLDKAQLQ---SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET 365
               + A+ D EE     + +++    E+  L+EK + ++ +L+    + +  E  + + E 
Sbjct:   332 SRESAIVDLEETVESLRNEVERKGDEIESLMEKMSNIEVKLRLSNQKLRVTEQVLTEKEG 391

Query:   366 EKMEITGLHEAQERGMQSEINQLKVEVCERDNR--IEALNKIMDSLKLKYDMLMAEK-DE 422
             E   I   H  +E+ +  E    K+       R  I+ +++ +DS  L     ++EK +E
Sbjct:   392 ELKRIEAKH-LEEQALLEE----KIATTHETYRGLIKEISERVDSTILNRFQSLSEKLEE 446

Query:   423 INAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENE 482
              +      + EA      +   ++   ++  E  E+    E   K   +L  +V+E E E
Sbjct:   447 KHKSYEKTVVEATKM---LLTAKKCVVEMKKEKDEMAKEKEEVEK---KLEGQVREEEKE 500

Query:   483 VDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQ 520
              ++ +  +L   EEKREAIRQLC  +EH+R   + L +
Sbjct:   501 KEKLKETLLGLGEEKREAIRQLCIWIEHHRDRCEYLEE 538

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 33/71 (46%), Positives = 47/71 (66%)

Query:     5 SSRWLAENLEEMDRSVKQMQKLIE-DGESLSK-----FH-RPELTAHIEDFYHLYQSLAE 57
             +S+W+ +NL +MD  VK M KLIE D +S ++     F  RPEL   +E+ Y  Y++LAE
Sbjct:    24 NSKWIQDNLADMDSKVKTMIKLIEADADSFARRADMYFKKRPELMKLVEELYRAYRALAE 83

Query:    58 RYDHLTGELQK 68
             RYDH T EL++
Sbjct:    84 RYDHTTVELRR 94

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2014245 AT1G64320 "AT1G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 92/361 (25%), Positives = 174/361 (48%)

Query:   178 EDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVN--IKEAD---LEMERRQVFELQN 232
             E K+++ +L  + +EEE  RL  E+  Q++   + ++  I E D   +EM+ +   E+++
Sbjct:   128 ETKMQLKSLKEE-TEEERNRLSEEI-DQLKGENQMLHRRISELDSLHMEMKTKSAHEMED 185

Query:   233 YVRELETRLSESNF---EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKF 289
               ++L+T +S+      E + +++ L    + Q +L   Q D     A+ D ++ +   F
Sbjct:   186 ASKKLDTEVSDQKKLVKEQDDIIRRLSAKIKDQQRLLKEQKDTIDKFAE-DQKQSKRWSF 244

Query:   290 -QERIAKVETNLSDRN-NEVAE-LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR- 345
                R  K+  N  +R   E+AE  ++ + D   +    +  + +E   L  K   +  R 
Sbjct:   245 GSSRDLKLNPNALERKMEELAEDFRMKIED-HIRILYRRIHV-AEQIHLESKNEYIKTRD 302

Query:   346 -LKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQ-SEINQLKVEVCER-DNRIEAL 402
              LKE     K   + +   ET+      + +A E+G   SE    K+E  E   NR+  +
Sbjct:   303 MLKE----NKENRESLMFFETQ---FNKMKDALEKGYTGSETAMKKLEEAEEVTNRVARI 355

Query:   403 NKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS 462
              K M+S KL      +E + + AK+    A+       + ++E   +KL  E  E +  +
Sbjct:   356 GKEMESAKLWVSEKKSEVETLTAKLECSEAQETLLKEKLSKLE---KKLAEEGTEKLKLA 412

Query:   463 ESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF 522
                 K++ +   R+KELE +V  + + +L   EEKREAIRQLC  +++++  Y +L+++ 
Sbjct:   413 ----KVLSKFETRIKELEVKVKGREVELLSLGEEKREAIRQLCILVDYHQDRYNQLKKSI 468

Query:   523 L 523
             L
Sbjct:   469 L 469

GO:0003674 "molecular_function" evidence=ND

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query:     5 SSRWLAENLEEMDRSVKQMQKLIE-DGESLSK----FHR--PELTAHIEDFYHLYQSLAE 57
             +S+WL +NL +MD +VKQM K++E D +S ++    ++R  PEL   +E+FY  Y++LAE
Sbjct:    25 NSKWLQDNLADMDSNVKQMIKVLEEDADSFARRAEMYYRKRPELMKLVEEFYRAYRALAE 84

Query:    58 RYDHLTGELQK 68
             RY+H TG + K
Sbjct:    85 RYNHATGVIHK 95

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 73/337 (21%), Positives = 153/337 (45%)

Query:   175 IQYEDKLRVLNLSLQLSEEEVARLK-------SELHSQIESAKRDVNIKEADLEMERRQV 227
             ++  DKL     +++   +E+  LK       SEL S ++SA + V   +  L+    + 
Sbjct:   649 LEIMDKLEQAQNTIKELMDELGELKDRHKEKESELSSLVKSADQQVADMKQSLDNAEEEK 708

Query:   228 FELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVL 287
               L   + ++   + E+   I+  M E E   QL+    + + ++T L    D       
Sbjct:   709 KMLSQRILDISNEIQEAQKTIQEHMSESE---QLKESHGVKERELTGLR---DIHETHQR 762

Query:   288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK 347
             +   R++++ET L      V +L  +L+ AEE    +K  L S +  + ++     ++++
Sbjct:   763 ESSTRLSELETQLKLLEQRVVDLSASLNAAEE----EKKSLSSMILEITDELKQAQSKVQ 818

Query:   348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMD 407
             E   +    +D + Q E E      +HEA +R   S++ +L+  V   + +++ LN+ ++
Sbjct:   819 ELVTELAESKDTLTQKENELSSFVEVHEAHKRDSSSQVKELEARVESAEEQVKELNQNLN 878

Query:   408 SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK 467
             S + +  +L  +  E++ K+    AE+      I ++   S +L   HAE      S R 
Sbjct:   879 SSEEEKKILSQQISEMSIKIKR--AEST-----IQELSSESERLKGSHAEKDNELFSLRD 931

Query:   468 LVD----ELRFRVKELENEVDRQRMVILDAAEEKREA 500
             + +    EL  +++ LE +++     +L+ +E  + A
Sbjct:   932 IHETHQRELSTQLRGLEAQLESSEHRVLELSESLKAA 968

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	533
pfam07765	74	pfam07765, KIP1, KIP1-like protein	4e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	2e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.003

>gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 7/63 (11%)

Query: 5  SSRWLAENLEEMDRSVKQMQKLI-EDGESLSKF------HRPELTAHIEDFYHLYQSLAE 57
          +S+WL ENL+EMD  VK+M KLI ED +S +K        RPEL A +E+FY  Y++LAE
Sbjct: 12 NSKWLEENLQEMDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVEEFYRAYRALAE 71

Query: 58 RYD 60
          RYD
Sbjct: 72 RYD 74

This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 9e-11
 Identities = 80/339 (23%), Positives = 156/339 (46%), Gaps = 17/339 (5%)

Query: 173 RVIQYEDKLRVLNLSLQLSEEEVARLKSELHS---QIESAKRDVNIKEADLEMERRQVFE 229
            + + E++L  L   L+  EEE+  LK+EL S    +E  +R +   E  LE  +R++  
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 230 LQNYVRELETRLSESNFEIERLMKELEGT----HQLQGQLKLAQDDVTTLNAKLDYERMQ 285
           L+  + +L++RL E   E+E L +ELE       +L+ +L+  ++ +  L  +++    +
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 286 VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR 345
               QE + ++E  L +    +  L+  L   E+     + +L+ E+  L E+   L+ +
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQ----RRERLEQEIEELEEEIEELEEK 843

Query: 346 LKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI 405
           L E E + + LE ++ + + E  E     EA++  ++ E+ +L+ E  E +  +  L   
Sbjct: 844 LDELEEELEELEKELEELKEELEE----LEAEKEELEDELKELEEEKEELEEELRELESE 899

Query: 406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESS 465
           +  LK + + L    +E+ AK+  L  E    +      EE+   L  E    I   E  
Sbjct: 900 LAELKEEIEKLRERLEELEAKLERL--EVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 466 RKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL 504
            + +  +  R  E   EV+ +   +    E+  EA  +L
Sbjct: 958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 27/342 (7%)

Query: 161 EEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADL 220
           EE  E  EEL  ++ + E  L  L   L+  EEE+ +L+ EL    E   R ++    DL
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----EELSRQISALRKDL 735

Query: 221 EMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLD 280
                +V +L+  + +L   L+E   EIE L + LE   + + +L  A+ ++  L A   
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE---EAEEELAEAEAEIEELEA--- 789

Query: 281 YERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQA 340
               Q+ + +E +  +   L +   E+  L    ++  E+       L+  +     +  
Sbjct: 790 ----QIEQLKEELKALREALDELRAELTLLNEEAANLRER----LESLERRIAATERRLE 841

Query: 341 LLDARLKEWELQGKALEDKIRQCETEKMEITG---LHEAQERGMQSEINQLKVEVCERDN 397
            L+ +++E     ++L  +I + E    E+         +   ++  +  L+ E+ E   
Sbjct: 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901

Query: 398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAE 457
            +  L      L+ + + L  +  ++  ++  L       DN   ++ E       E   
Sbjct: 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVR---IDNLQERLSEEYSLTLEEAEA 958

Query: 458 LIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKRE 499
           L    E      +E R R+K LEN++     V L A EE  E
Sbjct: 959 LENKIEDDE---EEARRRLKRLENKIKELGPVNLAAIEEYEE 997

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 59/329 (17%), Positives = 142/329 (43%), Gaps = 21/329 (6%)

Query: 191 SEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIER 250
           S     R   EL  ++   +  +   E +L+  + ++  L++ + EL  +L E   ++E 
Sbjct: 661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE 720

Query: 251 LMKELEGTH----QLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNE 306
           L +EL        QLQ +L+  ++++  L  +L+  + ++ + +E +  +E  L+    E
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETE 366
           + EL+      +E+      +L+ E+     +   L+  L+  E + + LE +I + E E
Sbjct: 781 IEELEEKRQALQEEL----EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 367 KMEITGL----------HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML 416
             E+              E +   ++ E+ +L+ E  E ++ ++ L +  + L+ +   L
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 417 MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH--MEHAELIAASESSRKLVDELRF 474
            +E  E+  ++  L       +  + ++E    +L   +E            + ++ L  
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE 956

Query: 475 RVKELENEVDRQRMVILDAAEEKREAIRQ 503
            ++ L   V+ + +   +  EE+ E ++ 
Sbjct: 957 EIEALGP-VNLRAIEEYEEVEERYEELKS 984

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 74/363 (20%), Positives = 154/363 (42%), Gaps = 24/363 (6%)

Query: 168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQV 227
           EEL  ++ + E +        +L  E      + L ++++  ++++   E +L     ++
Sbjct: 196 EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL 255

Query: 228 FELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT----TLNAKLDYER 283
            ELQ  + E E  + E   E+E L +ELE   +   +LK   +++      L  +L+   
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315

Query: 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343
            ++ + +ER+ +++  +     E+ E +  L + E+     +   +       E +  L 
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE-------ELEEKLS 368

Query: 344 ARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN 403
           A L+E E   +AL +++ + E E  EI      +   ++ EI  L+  +     R+E L 
Sbjct: 369 ALLEELEELFEALREELAELEAELAEI----RNELEELKREIESLEERLERLSERLEDLK 424

Query: 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASE 463
           + +  L+ + + L  E +E+N ++  L  +     + + ++E    +L  E   L     
Sbjct: 425 EELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL----- 479

Query: 464 SSRKLVDELRFRVKELENEVDRQRMV--ILDAAEEKREAIRQLCFSLEHYRSGYQELRQA 521
              K +  L  R+  LE E    + V  +L+A E     +      L   +  Y+   +A
Sbjct: 480 --EKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEA 537

Query: 522 FLG 524
            LG
Sbjct: 538 ALG 540

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 59/276 (21%), Positives = 123/276 (44%), Gaps = 22/276 (7%)

Query: 186 LSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESN 245
             L+   E + R  S L S++   +  ++    +L    R++ E++  + +LE    +  
Sbjct: 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK 736

Query: 246 FEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR-- 303
             +E L ++L     L+ +++  + ++  L A+++     + K +E +  +E  LS    
Sbjct: 737 ERLEELEEDLS---SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 304 ----------NNEVAELKIALSDAE---EKFTLDKAQLQSEMFCLLEKQALLDARLKEWE 350
                       EV+ ++  L + E    + TL+K  L+ E+  L E++  L  ++K  E
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853

Query: 351 LQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLK 410
            + + L  K  + E E  E     EA  R ++S +  LK E  E + ++  L + ++ L+
Sbjct: 854 KEIENLNGKKEELEEELEE----LEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 411 LKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEE 446
            + +       E+ AK+  L  E    ++  G+ EE
Sbjct: 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 62/298 (20%), Positives = 141/298 (47%), Gaps = 17/298 (5%)

Query: 161 EEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKS---ELHSQIESAKR---DVN 214
           EE  E  EEL   + + E++L  L   LQ  EE++  L+    EL  +IE  ++    + 
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 215 IKEADLEME-RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT 273
            + + LE + +     L N  R+LE   ++      +L +  E   +L+ +L+  ++++ 
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 274 TLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMF 333
           +L A+L+    ++ + + R+ ++E  L    ++VA+L++ ++    +    +A+L+    
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER--- 411

Query: 334 CLLEKQALLDARLKE--WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE 391
            L +++  L   ++E   +L+   L++   + E  + E+  L E  ER ++  + +L+ E
Sbjct: 412 -LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER-LEEALEELREE 469

Query: 392 VCERDNRIEALNKIMDSLKLKYDML---MAEKDEINAKVNTLMAEARSRDNHIGQIEE 446
           + E +  ++A  + +  L+ + D L       +  +  V  L+         +G + E
Sbjct: 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 24/299 (8%)

Query: 157 KELTEEANETYEELLG-RVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNI 215
           KEL  E  E    LL  R+ +  ++L  L   L+ +EEE+  L +EL             
Sbjct: 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL-----------QE 264

Query: 216 KEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGT----HQLQGQLKLAQDD 271
            E  LE  R +V EL+  + EL+  L     EI RL ++ +        L+ QL+  +  
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 272 VTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ-- 329
           +  L +KLD    ++ + +E++ +++  L     E+ EL+  L + E +    + QL+  
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 330 -SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI-TGLHEAQERGMQSEINQ 387
            S++  L  + A L+  ++  E + + LED+  + + E  E+   L EA+ + +Q+E+ +
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444

Query: 388 LKVE----VCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG 442
           L+ E      E +   EAL ++ + L+     L A + E+      L +  R ++N  G
Sbjct: 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 62/283 (21%), Positives = 134/283 (47%), Gaps = 27/283 (9%)

Query: 205 QIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQ 264
           ++E  + ++   + +L+    ++ EL   ++ELE +L E   E+  L +E+E   +LQ +
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE---ELQKE 289

Query: 265 LKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD 324
           L    ++++ L         Q    +ER+A +E  L +   ++ EL+  L +  E+    
Sbjct: 290 LYALANEISRLE-------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342

Query: 325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSE 384
           + +L+     L E+   L+A L+E E + + LE ++ + E +        E      +S+
Sbjct: 343 EEKLEE----LKEELESLEAELEELEAELEELESRLEELEEQ-------LETL----RSK 387

Query: 385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI 444
           + QL++++   +N IE L   ++ L+ + + L  E +E+  K+     +    +  + ++
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEEL 445

Query: 445 EEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQR 487
           EE   +L  E   L  A E  R+ ++E    +   E E+ + +
Sbjct: 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 66/307 (21%), Positives = 135/307 (43%), Gaps = 25/307 (8%)

Query: 217 EADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLN 276
           + +L+    ++ EL+  + +LE  L     E+  L   LE   +L+ QL+  +  +  L 
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE---ELRRQLEELERQLEELK 722

Query: 277 AKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336
            +L     ++ + Q R+ ++E  L +   E+ EL+  L + EE           E+  L 
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE-----------ELESLE 771

Query: 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERD 396
           E  A L   ++E E + +AL++++ + E E  E     E +   ++ E+  L+      +
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEA----ERRLDALERELESLEQRRERLE 827

Query: 397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHA 456
             IE L + ++ L+ K D L  E +E+  ++  L  E    +    ++E+  ++L  E  
Sbjct: 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887

Query: 457 ELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQ 516
           EL        + + EL   + EL+ E+++ R  + +   +      +L    E     Y+
Sbjct: 888 EL-------EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Query: 517 ELRQAFL 523
           +  +  L
Sbjct: 941 DTLETEL 947

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 69/348 (19%), Positives = 150/348 (43%), Gaps = 44/348 (12%)

Query: 155  DGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSEL---HSQIESAKR 211
            + +   E+  E  + L   +   ED L  L   L+  E ++  LK EL     ++E  + 
Sbjct: 678  ELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737

Query: 212  DVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKEL-----------EGTHQ 260
             +   E +LE    ++ ELQ  + ELE  L      + +L +E+           E   +
Sbjct: 738  RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797

Query: 261  LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320
            L+ +L+ A+  +  L  +L+    +  + ++ I ++E  + +   ++ EL+  L + E++
Sbjct: 798  LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857

Query: 321  FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI-TGLHEAQER 379
                  +L+ E+  L  ++  L+  LKE E + + LE+++R+ E+E  E+   + + +ER
Sbjct: 858  ----LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913

Query: 380  GMQSEINQLKVEV------------------CERDNRIEALNKIMDSLKL-------KYD 414
              + E    ++EV                   E +  IE L + +++L         +Y+
Sbjct: 914  LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973

Query: 415  MLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS 462
             +    +E+ ++   L          I ++++  R+   E  + I  +
Sbjct: 974  EVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINEN 1021

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 28/268 (10%)

Query: 161 EEANETYEELLGRVIQYEDKLRVLNLSLQ-LSEEEVARLKS---ELHSQIESAKRDVNIK 216
           E+  E   EL  R+ + E  L  LN  ++ L EEE  R+K    EL ++I S +R  +I 
Sbjct: 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER--SIA 311

Query: 217 EADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLN 276
           E + E+E     + +  + +LE  + +   EIE L +E+E       + +  +D +T   
Sbjct: 312 EKERELE-----DAEERLAKLEAEIDKLLAEIEELEREIE-------EERKRRDKLTEEY 359

Query: 277 AKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL 336
           A+L  E       +  + +V+   ++  +E+ + +  L   + +      +L+ E+  L 
Sbjct: 360 AELKEELE---DLRAELEEVDKEFAETRDELKDYREKLEKLKRE----INELKRELDRLQ 412

Query: 337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERD 396
           E+   L   L +       +E KI + E EK +     + QE  ++     L     E  
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472

Query: 397 NRIEALNKIMD---SLKLKYDMLMAEKD 421
           +  E  +++      L+ +     A+  
Sbjct: 473 DLKEEYDRVEKELSKLQRELAEAEAQAR 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 64/336 (19%), Positives = 132/336 (39%), Gaps = 37/336 (11%)

Query: 169 ELLGRVIQYEDKLRVL--NLSLQLSEEEVARLKSELHSQIESAKRDVNIKE--ADLEMER 224
           E L  V +  ++L ++      QL      R K+E +  +   KR+    E   + E   
Sbjct: 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALE 236

Query: 225 RQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYE-R 283
           RQ   ++  +  LE  L +   EI  L K LE            +  +  LN K+     
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEE----------IEQLLEELNKKIKDLGE 286

Query: 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343
            + L+ +E+I ++E  ++     +AE +  L DAEE+     A+L++E+  LL +   L+
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER----LAKLEAEIDKLLAEIEELE 342

Query: 344 ARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN 403
             ++E   +   L ++  + + E  +                  L+ E+ E D       
Sbjct: 343 REIEEERKRRDKLTEEYAELKEELED------------------LRAELEEVDKEFAETR 384

Query: 404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASE 463
             +   + K + L  E +E+  +++ L  E +     +  +      +  +  EL    E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKRE 499
                + +  +++++L  ++ +    + D  EE   
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 60/288 (20%), Positives = 137/288 (47%), Gaps = 35/288 (12%)

Query: 201 ELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQ 260
            L  ++E  KR+++  +++L     ++ EL   + +   ++ E   EIE+L +E E   +
Sbjct: 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE---K 734

Query: 261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK 320
           L+ +L+  ++D+++L  +++  + ++ + + RI ++E +L      + +L+     +  +
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE--ARLSHSR 792

Query: 321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERG 380
               +A+L             L+  +   E + + +E K+ +   EK             
Sbjct: 793 IPEIQAELSK-----------LEEEVSRIEARLREIEQKLNRLTLEKEY----------- 830

Query: 381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAE----ARS 436
           ++ EI +L+ +  +   +I+++ K +++L  K + L  E +E+ A +  L +      + 
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 437 RDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD 484
           RD    Q+ E  RK+     EL A  E  RK + EL+ +++ LE E+ 
Sbjct: 891 RDELEAQLRELERKIE----ELEAQIEKKRKRLSELKAKLEALEEELS 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 41/242 (16%), Positives = 109/242 (45%), Gaps = 29/242 (11%)

Query: 264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTL 323
           +L L    +  L  +L+  + ++ + +E + ++   L +   ++ EL++ +S+ EE+   
Sbjct: 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI-- 283

Query: 324 DKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQS 383
              +LQ E++ L  + + L+ + +                             +   ++ 
Sbjct: 284 --EELQKELYALANEISRLEQQKQI-------------------------LRERLANLER 316

Query: 384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQ 443
           ++ +L+ ++ E +++++ L + +  L+ K + L  E + + A++  L AE    ++ + +
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

Query: 444 IEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQ 503
           +EE    L  + A+L     S    ++ L  R++ LE+  +R +  I +  ++  EA  +
Sbjct: 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436

Query: 504 LC 505
             
Sbjct: 437 EL 438

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 69/309 (22%), Positives = 136/309 (44%), Gaps = 23/309 (7%)

Query: 157  KELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIK 216
            KE  EE  E    L   +   + +L+ L   ++  EE++ +L+  L+  +E+      I 
Sbjct: 736  KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-LEARLSHSRIP 794

Query: 217  EADLEME--RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQ----LQGQLKLAQD 270
            E   E+     +V  ++  +RE+E +L+    E E L KE++   +    L+ Q+K  + 
Sbjct: 795  EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854

Query: 271  DVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS 330
            ++  LN K +    ++ + +  +  +E+ L D   E  EL+  L + E K      +L++
Sbjct: 855  EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK----IEELEA 910

Query: 331  EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV 390
            ++    ++ + L A+L+  E +   +ED   + E    E   L + Q            +
Sbjct: 911  QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE----------L 960

Query: 391  EVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRK 450
            +  E    I AL  +      +Y+ ++   DE+  K   L  E ++    I + E+  R+
Sbjct: 961  QRVEE--EIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

Query: 451  LHMEHAELI 459
            + ME  E I
Sbjct: 1019 VFMEAFEAI 1027

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 61/298 (20%), Positives = 136/298 (45%), Gaps = 29/298 (9%)

Query: 158  ELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSE---LHSQIESAKRDVN 214
            E   + ++   EL   + + E++L      L  +E E+  L+++   L  ++++ +  ++
Sbjct: 747  ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 215  IKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTT 274
               A+L +   +   L+  +  LE R++ +   +E L +++E   +L   ++    ++  
Sbjct: 807  ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE---ELSEDIESLAAEIEE 863

Query: 275  LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC 334
            L   ++    ++       A +E  L+   +E+ EL   L + E K +  + +L+     
Sbjct: 864  LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE---- 919

Query: 335  LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEIT-GLHEAQERGMQSEINQLKVEVC 393
            L EK A L+ RL+  E++   L++++     E+  +T    EA E  ++ +  + +  + 
Sbjct: 920  LREKLAQLELRLEGLEVRIDNLQERLS----EEYSLTLEEAEALENKIEDDEEEARRRLK 975

Query: 394  ERDNRIEALNKI-------MDSLKLKYDMLMAEKDEINAKVNTLM-------AEARSR 437
              +N+I+ L  +        + LK +YD L A+K+++     TL         EAR R
Sbjct: 976  RLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 72/350 (20%), Positives = 147/350 (42%), Gaps = 38/350 (10%)

Query: 165 ETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMER 224
           E   + LG VI+   +            E +  L  E   ++E   R++N   ++L   R
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220

Query: 225 RQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERM 284
            ++ +L+  V+ELE    E   E+E+ ++ LEG                 L  K+     
Sbjct: 221 EELEKLEKEVKELEELKEEIE-ELEKELESLEG-------------SKRKLEEKIRELEE 266

Query: 285 QVLKFQERIAKVETNLSDRNN--EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL 342
           ++ + ++ I ++E  + +     E AE  I LS+  E++  +  +++  +  L E+   +
Sbjct: 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326

Query: 343 DARLKEWELQG---KALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRI 399
           + R+KE E +    + L+ K+++ E    E+   HE  E     +    +++        
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386

Query: 400 EALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI--------------- 444
           E L K ++ L+   + +  E  +I A++  L  E +     I ++               
Sbjct: 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT 446

Query: 445 EEHSRKLHMEHAELIAASESSRKLVDE----LRFRVKELENEVDRQRMVI 490
           EEH ++L  E+   +   E   K ++E    LR  ++ELE  + ++  +I
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 57/293 (19%), Positives = 115/293 (39%), Gaps = 22/293 (7%)

Query: 218 ADLEMERRQVFELQNYVRELET---RLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTT 274
            +LE     +  L   + E      RL     + ER    L+   + +G   L +     
Sbjct: 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKE--KEA 234

Query: 275 LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC 334
           L  + +    Q+   +E + K+   +S+    + E++  L +  +K   D  +       
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK-DLGE------- 286

Query: 335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE 394
             E+Q  +  ++ E E +  +LE  I + E E  +     E +   +++EI++L  E+ E
Sbjct: 287 --EEQLRVKEKIGELEAEIASLERSIAEKERELEDA----EERLAKLEAEIDKLLAEIEE 340

Query: 395 RDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME 454
            +  IE   K  D L  +Y  L  E +++ A++  +  E     + +    E   KL  E
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400

Query: 455 HAELIAASESSRKLVDELRFRVKELENEVDRQRMVIL---DAAEEKREAIRQL 504
             EL    +  ++ +  L   + +L   +      I    +  E+K   I++ 
Sbjct: 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 24/242 (9%)

Query: 283 RMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTL---DKAQLQSEMFCLLEKQ 339
              +L+ +  I ++E  + +   ++AEL+ AL++  ++      +  QL+ E+  L  + 
Sbjct: 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728

Query: 340 ALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRI 399
           + L   L   E + + LE++I Q   E  E+    EA+   ++  + + + E+ E +  I
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTEL----EAEIEELEERLEEAEEELAEAEAEI 784

Query: 400 EALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDN--------------HIGQIE 445
           E L   ++ LK +   L    DE+ A++  L  EA +                  +  +E
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844

Query: 446 EHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD---RQRMVILDAAEEKREAIR 502
           E   +L  +   L A  E   +L++EL   ++ L NE         ++    EE  E +R
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904

Query: 503 QL 504
           +L
Sbjct: 905 EL 906

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 19/225 (8%)

Query: 156 GKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNI 215
             E  E+  E YE+L  ++I+ + +++ L   L    E++  LK +L +++E    ++  
Sbjct: 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKL-AELEKKLDELEE 570

Query: 216 KEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTL 275
           + A+L              +ELE    ES  E+E  +KELE  +    +LK A+ ++   
Sbjct: 571 ELAELL-------------KELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617

Query: 276 NAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE-EKFTLDKAQLQSEMFC 334
             +L     ++ K  E +A+ E  L +   E+ EL+   S+ E E+   +  +L  E+  
Sbjct: 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677

Query: 335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQER 379
           L  +   L+ R +E +   + L++++ + E  K E+  L +A ER
Sbjct: 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420
           RQ E+E      L  + ER ++S++ QLK E      ++ +    M S K K      +K
Sbjct: 426 RQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNS----MVSAKQK------DK 475

Query: 421 DEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAE----LIAASESSRKLVDELRFRV 476
             + +    L +EA SR N   Q+ E  ++   E          A+ S  +  + L+   
Sbjct: 476 QSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAK 535

Query: 477 KELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYR 512
           ++LE E+ +    +    EE R   ++    L  Y+
Sbjct: 536 QDLEMEIKKLEHDLKLKEEECRMLEKE-AQELRKYQ 570

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 156 GKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSE----------LHSQ 205
            +E   E   T EE    +  YE +++ L  +++  EEE + LK E          L S+
Sbjct: 399 EEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458

Query: 206 IESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQG 263
           +E  +R+V  K      + R++      +  LE  L E    +E L ++L    +++ 
Sbjct: 459 LERFRREVRDK----VRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512

Length = 652

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 55/255 (21%), Positives = 114/255 (44%), Gaps = 7/255 (2%)

Query: 152 INMDGKELTEEANETYEELLGRVIQYEDKLRVLNLS--LQLSEEEVARLKSELHSQIESA 209
             ++  E   EA E   + L ++ + +++     L   ++  EE +A L+ E     E  
Sbjct: 196 ELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELK 255

Query: 210 KRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQ 269
            R + I+  +LE  + +  EL+   R LE    +    +E L +E+E   +    L+   
Sbjct: 256 ARLLEIESLELEALKIREEELRELERLLEELEEKIE-RLEELEREIEELEEELEGLRALL 314

Query: 270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ 329
           +++  L  KL     ++ K +E++ K+E+ L +   E  EL   L +  ++      +L+
Sbjct: 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELE 374

Query: 330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLK 389
            E+   LE+   L+  ++E + +   L   + + + E  E+    E  ER    E+ +L+
Sbjct: 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELER----ELEELE 430

Query: 390 VEVCERDNRIEALNK 404
            E+ + + +I  L  
Sbjct: 431 EEIKKLEEQINQLES 445

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 70/374 (18%), Positives = 141/374 (37%), Gaps = 37/374 (9%)

Query: 158 ELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKE 217
           EL EE  +  E L     + +D L    L      E V   + EL  + E  +  +    
Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLD-DADAEAVEARREELEDRDEELRDRLEECR 334

Query: 218 ADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTH----QLQGQLKLAQDDVT 273
              +    +   L+    +LE R  E   E   L  ELE         + +++  ++++ 
Sbjct: 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394

Query: 274 TLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ---- 329
            L  +     + +   ++ + ++     +     AEL+  L  A E+    +A L+    
Sbjct: 395 ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC 454

Query: 330 ---------SEMFCLL----EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEA 376
                    S     +    E+   L+A L++ E + + +E+++ + E        +   
Sbjct: 455 PECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL 514

Query: 377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS 436
           +ER  + ++ +L   + ER   IE   +  + L+ +   L AE +E          EA  
Sbjct: 515 EER--REDLEEL---IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569

Query: 437 RDNHIGQIEEHSRKLHMEH------AELIAASESSRKLVDELRFRVKELENEVDRQRMVI 490
               + ++     +L            L+AA   +   ++ LR + + L  E++ +R   
Sbjct: 570 AREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL-AELNDERR-- 626

Query: 491 LDAAEEKREAIRQL 504
            +   EKRE  R+L
Sbjct: 627 -ERLAEKRERKREL 639

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 42/229 (18%), Positives = 101/229 (44%), Gaps = 18/229 (7%)

Query: 152 INMDGKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH---SQIES 208
           I   G+E      E   EL   +   E  +      L+ +EE +A+L++E+    ++IE 
Sbjct: 281 IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE 340

Query: 209 AKRDVNIKEADLE------MERRQVFE-LQNYVRELETRLSESNFEIERLMKELEGT--- 258
            +R++  +    +       E ++  E L+  + E++   +E+  E++   ++LE     
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400

Query: 259 -HQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA 317
            ++L+ +L   Q+++  L+ +L      +   + +I ++E    D+  E+ + +  L   
Sbjct: 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460

Query: 318 EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETE 366
                 D ++ + E++ L E+   ++  L + + +    E + R  E  
Sbjct: 461 AA----DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 157 KELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHS---QIESAKRDV 213
           +E  EE  E  E L   + + E +L  L   L+  EE++  L+S++     QI S   ++
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402

Query: 214 NIKEADLEMERRQVFELQNYVRELETRLSESNF-----EIERLMKELEGTHQ----LQGQ 264
              EA LE    +   LQ  + EL  +L E+       E+E L +ELE   +    L+  
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

Query: 265 LKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET---NLSDRNNEVAELK 311
           L+  ++++      LD    ++ + Q R+  +E    NL   +  V  L 
Sbjct: 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 37/235 (15%), Positives = 94/235 (40%), Gaps = 22/235 (9%)

Query: 241 LSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL 300
           L    F+++ +  +L     L+ +L  AQ +      + +  R ++ K ++    V   L
Sbjct: 69  LRSGVFQLDDIRPQLR---ALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125

Query: 301 SDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKI 360
           +     +A+ +  L+   ++       LQ+ +  L E++  L+A+ +  +   K L+   
Sbjct: 126 AAARQNLAKAQQELARLTKQAQ----DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASA 181

Query: 361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK 420
            Q +++ +++        +   ++I Q    +  R N  +A  + +              
Sbjct: 182 TQLKSQVLDL--------KLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233

Query: 421 DEINAKVNTLMAEARSRDNHIGQIEEHSRK-------LHMEHAELIAASESSRKL 468
            + +A+++    +  +R   I + E   ++       L  E A+L A  ++  +L
Sbjct: 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRL 288

Length = 499

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PF07765	74	KIP1: KIP1-like protein; InterPro: IPR011684 This	99.94
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.22
PRK02224	880	chromosome segregation protein; Provisional	99.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.15
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.14
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.11
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.09
PRK02224	880	chromosome segregation protein; Provisional	99.01
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.0
PRK03918	880	chromosome segregation protein; Provisional	99.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.99
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.93
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.91
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.8
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.8
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.74
PRK03918	880	chromosome segregation protein; Provisional	98.74
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.62
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.57
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.54
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.52
PRK01156	895	chromosome segregation protein; Provisional	98.51
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.49
PRK01156	895	chromosome segregation protein; Provisional	98.48
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.44
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.42
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.4
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.32
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.32
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.32
PHA02562	562	46 endonuclease subunit; Provisional	98.32
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.29
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.29
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.28
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.23
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.19
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.17
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.12
PRK04778	569	septation ring formation regulator EzrA; Provision	98.12
PHA02562	562	46 endonuclease subunit; Provisional	98.07
PRK11637	428	AmiB activator; Provisional	98.06
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.02
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.97
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.92
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.9
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.86
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.85
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.8
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.78
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.77
PRK04863	1486	mukB cell division protein MukB; Provisional	97.76
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.75
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.74
PRK11637	428	AmiB activator; Provisional	97.74
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.7
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.67
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.63
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.62
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.61
PRK04863	1486	mukB cell division protein MukB; Provisional	97.57
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.53
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.52
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.5
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.46
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.45
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.36
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.35
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.34
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.29
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.28
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.28
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.26
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.24
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.24
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.15
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.15
PRK04778	569	septation ring formation regulator EzrA; Provision	97.1
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.05
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.0
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.0
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.95
PF13514	1111	AAA_27: AAA domain	96.93
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.93
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.92
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.9
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	96.89
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.87
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.86
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.86
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.85
PRK09039	343	hypothetical protein; Validated	96.82
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.77
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.74
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.7
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.7
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.69
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.66
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.65
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.65
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.62
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.56
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.55
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.47
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.41
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.27
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.21
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.14
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.11
PRK09039	343	hypothetical protein; Validated	96.1
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.05
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	96.03
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.0
KOG4677	554	consensus Golgi integral membrane protein [Intrace	95.98
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.97
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.87
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.86
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.77
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.73
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.59
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.58
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.49
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.49
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.45
PF13514	1111	AAA_27: AAA domain	95.27
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	95.24
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.14
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.13
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.06
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.04
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.01
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.0
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.96
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.9
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.86
PLN02939	977	transferase, transferring glycosyl groups	94.85
PRK11281	1113	hypothetical protein; Provisional	94.75
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.71
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.68
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.62
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.62
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.41
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.34
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.32
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.29
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.03
PLN03188	1320	kinesin-12 family protein; Provisional	93.86
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.74
PF13166	712	AAA_13: AAA domain	93.65
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	93.64
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.58
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.4
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	93.35
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.34
KOG2991	330	consensus Splicing regulator [RNA processing and m	93.27
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.25
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.03
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.99
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.82
KOG3850	455	consensus Predicted membrane protein [Function unk	92.81
KOG0249	916	consensus LAR-interacting protein and related prot	92.76
KOG4677	554	consensus Golgi integral membrane protein [Intrace	92.72
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.65
COG4372	499	Uncharacterized protein conserved in bacteria with	92.62
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	92.57
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.56
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.53
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.53
PLN02939	977	transferase, transferring glycosyl groups	92.51
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.46
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.41
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	92.21
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	92.1
PLN03188	1320	kinesin-12 family protein; Provisional	91.95
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.94
KOG1937	521	consensus Uncharacterized conserved protein [Funct	91.89
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	91.88
COG4372	499	Uncharacterized protein conserved in bacteria with	91.87
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.77
KOG0979	1072	consensus Structural maintenance of chromosome pro	91.68
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.64
PRK11281	1113	hypothetical protein; Provisional	91.57
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.55
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	91.55
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	91.43
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.37
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	91.34
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.28
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	91.08
PRK10929	1109	putative mechanosensitive channel protein; Provisi	91.01
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.93
PRK10869	553	recombination and repair protein; Provisional	90.6
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	90.57
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.51
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.51
PRK10884	206	SH3 domain-containing protein; Provisional	90.37
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.28
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.24
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.15
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	90.09
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.0
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.95
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.93
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	89.89
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	89.71
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.46
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.43
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.24
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.94
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	88.93
COG2433	652	Uncharacterized conserved protein [Function unknow	88.72
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	88.58
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	88.54
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.32
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.87
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	87.84
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	87.67
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	87.62
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	87.47
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	87.33
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.08
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	86.87
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.76
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.62
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.07
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.85
COG2433	652	Uncharacterized conserved protein [Function unknow	85.81
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	85.43
PF15294	278	Leu_zip: Leucine zipper	85.0
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	84.71
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	84.58
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.39
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	83.88
PRK10884	206	SH3 domain-containing protein; Provisional	83.54
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	83.54
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.34
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	83.23
PF13166	712	AAA_13: AAA domain	83.2
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.08
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	82.6
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.42
KOG1003	205	consensus Actin filament-coating protein tropomyos	82.35
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	82.35
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	82.1
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	81.97
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	81.79
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.34
PF01496	759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	80.95
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	80.77
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.54
KOG0244	913	consensus Kinesin-like protein [Cytoskeleton]	80.52
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.47
PRK10246	1047	exonuclease subunit SbcC; Provisional	80.09

>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants

Probab=99.94  E-value=1.1e-27  Score=198.73  Aligned_cols=59  Identities=59%  Similarity=0.970  Sum_probs=58.3

Q ss_pred             CCccchhHHHhHHHHHHHHHHHHHHhh-ccccccc------ccchhHHHHHHHHHHHHHHHHHHhh
Q 037185            2 SRSSSRWLAENLEEMDRSVKQMQKLIE-DGESLSK------FHRPELTAHIEDFYHLYQSLAERYD   60 (533)
Q Consensus         2 s~~~skWl~~nL~~me~~vk~mlklie-d~dSfak------~~RpeLi~~vee~yr~yraLAeryd   60 (533)
                      +|+|||||++||+|||.+||.|||||+ ||||||+      ++||+||++||+|||+||+||||||
T Consensus         9 ~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen    9 SPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999 9999999      9999999999999999999999998

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.22  E-value=4.6e-07  Score=102.15  Aligned_cols=123  Identities=19%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh------hhhhhhhhhHHHHHHHHHHH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA------RSRDNHIGQIEEHSRKLHME  454 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~------~sRd~~I~qme~hl~qL~~e  454 (533)
                      +..++..+..++......+..++..+..+..+++.+......+..++..+...+      ...+..+.++..++..|.-+
T Consensus       887 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~  966 (1164)
T TIGR02169       887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE  966 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444433333332221      11122345666677766654


Q ss_pred             HHHH-------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 037185          455 HAEL-------IAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQ  503 (533)
Q Consensus       455 ~~~l-------~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQ  503 (533)
                      ...+       +..-+.+......|..+...|++....-...|-+.-..+++++..
T Consensus       967 i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~ 1022 (1164)
T TIGR02169       967 IRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022 (1164)
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333       355566667777777888888888888888888888777777665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.16  E-value=1.8e-06  Score=96.73  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=10.6

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhh
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKL  279 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kl  279 (533)
                      ..++.+.+++..+..++..|+.++
T Consensus       475 ~~~~~~~~~~~~le~~l~~~~~~~  498 (880)
T PRK02224        475 ERVEELEAELEDLEEEVEEVEERL  498 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.15  E-value=1.9e-06  Score=97.23  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=14.7

Q ss_pred             HHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          174 VIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       174 iielEdELreaneKL~~sEEe~~rlk  199 (533)
                      +..|...+..+...|....+.+.++.
T Consensus       165 ~~~~~~~~~~~~~~l~~~~~~l~el~  190 (1164)
T TIGR02169       165 VAEFDRKKEKALEELEEVEENIERLD  190 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666555555553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.14  E-value=8.2e-07  Score=99.49  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=15.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk  199 (533)
                      .+...+..++.++..++.++...+.+...+.
T Consensus       674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~  704 (1179)
T TIGR02168       674 ERRREIEELEEKIEELEEKIAELEKALAELR  704 (1179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555544444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.11  E-value=4.4e-06  Score=93.76  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=13.5

Q ss_pred             HHhhHHHHHHHHHHHhhhHHHHHhhHH
Q 037185          174 VIQYEDKLRVLNLSLQLSEEEVARLKS  200 (533)
Q Consensus       174 iielEdELreaneKL~~sEEe~~rlk~  200 (533)
                      +..|...+..+...|....+.+..++.
T Consensus       167 ~~~~~~~~~~t~~nL~r~~d~l~el~~  193 (1179)
T TIGR02168       167 ISKYKERRKETERKLERTRENLDRLED  193 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.09  E-value=3.9e-06  Score=97.98  Aligned_cols=287  Identities=22%  Similarity=0.307  Sum_probs=142.5

Q ss_pred             hhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHH
Q 037185          209 AKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLK  288 (533)
Q Consensus       209 a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~k  288 (533)
                      +.+++...+..+.....+...++.++..++.          ++..+.+.+..++.++..++.++..+....       .+
T Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~  776 (1163)
T COG1196         714 LERQLEELKRELAALEEELEQLQSRLEELEE----------ELEELEEELEELQERLEELEEELESLEEAL-------AK  776 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            3334444444444444555555555554442          233334444444444444444444444333       33


Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHH---hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAE---EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAe---eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      |..++..+..........+.++..++.++.   ..+..+..+....+..|..+...++.++.+|+..+..+...+..++.
T Consensus       777 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~  856 (1163)
T COG1196         777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK  856 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            444444444333333333334444433333   11122222333333444444455555555555555555555555555


Q ss_pred             HHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHH-------HHHHHHHHHhhhhh
Q 037185          366 EKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEIN-------AKVNTLMAEARSRD  438 (533)
Q Consensus       366 EK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~-------~kv~~L~ad~~sRd  438 (533)
                      ...++..    +..+++.++..+..++......+..++..+..+..++..+..+...+.       .++..+...+..+.
T Consensus       857 ~~~~~~~----~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  932 (1163)
T COG1196         857 ELEELKE----ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE  932 (1163)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433    333344444444444444444444444444444444333333333333       33333333333322


Q ss_pred             hhhhh---------HHHHHHHHHHH-------HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185          439 NHIGQ---------IEEHSRKLHME-------HAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIR  502 (533)
Q Consensus       439 ~~I~q---------me~hl~qL~~e-------~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIR  502 (533)
                      ..+..         .+..+..|.-+       --.-|.+.+.+.+-...|..+...|++..+.=...|.+.-..++++..
T Consensus       933 ~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~ 1012 (1163)
T COG1196         933 EELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFK 1012 (1163)
T ss_pred             hhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221         22333333322       123467778888999999999999999999999999999999999999


Q ss_pred             HHhhhhH-hhhhhHH
Q 037185          503 QLCFSLE-HYRSGYQ  516 (533)
Q Consensus       503 QLCfsle-hyr~~y~  516 (533)
                      ..|..+. +|+.-|.
T Consensus      1013 ~~f~~In~~F~~if~ 1027 (1163)
T COG1196        1013 ETFDKINENFSEIFK 1027 (1163)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            8776553 3333333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.01  E-value=3.1e-05  Score=86.96  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 037185          384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASE  463 (533)
Q Consensus       384 Eie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~  463 (533)
                      .++...+.+.+....++.+.+.+..|+..++....+.+.+.+....+..++.+-..++.+++..+..|. ....+.....
T Consensus       524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~  602 (880)
T PRK02224        524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIA  602 (880)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            344444455555555566666666666666555554555555555554444555555555555555444 3334444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 037185          464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL  504 (533)
Q Consensus       464 ~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQL  504 (533)
                      .+...+.+|+..+.+|+..    +..+.+.-+++|.-|.+|
T Consensus       603 ~~~~~~~~~~~~~~~l~~~----~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        603 DAEDEIERLREKREALAEL----NDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            4444444444444444333    223444444455555544

>TIGR00606 rad50 rad50

Probab=99.00  E-value=9e-06  Score=96.04  Aligned_cols=182  Identities=13%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh----hHh
Q 037185          302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH----EAQ  377 (533)
Q Consensus       302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~----~~q  377 (533)
                      .+-.++..+...+.++..++.|=+..+..-.+.+.+.....+.++.+....++.+...+.++..-..++....    ..+
T Consensus       892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~q  971 (1311)
T TIGR00606       892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY  971 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3334444444444444444444444444444444444444444444444444445555555544444433211    112


Q ss_pred             hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH--HHHhhhhhhhhhhHHHHHHH-----
Q 037185          378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTL--MAEARSRDNHIGQIEEHSRK-----  450 (533)
Q Consensus       378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L--~ad~~sRd~~I~qme~hl~q-----  450 (533)
                      ...+..++..+...+.+...++..++..|..++.+++.+..++..+..-+..+  ...+..-..+|..|+.++.+     
T Consensus       972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606       972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            23333444444444445555555555555555555555555555555555554  44444444444444444433     


Q ss_pred             -------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185          451 -------LHMEHAELIAASESSRKLVDELRFRVKELENEV  483 (533)
Q Consensus       451 -------L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev  483 (533)
                             |.-++..|.+....+...+..|..++..|+.++
T Consensus      1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1052 MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   333444444444444455555555555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=99.00  E-value=2.7e-05  Score=87.04  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-----HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185          419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH-----MEHAELIAASESSRKLVDELRFRVKELENEVD  484 (533)
Q Consensus       419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~-----~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve  484 (533)
                      +...+...+..+...+..-..+|.+++..+..|.     -.|..+-.....+...+.++......++..++
T Consensus       620 ~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~  690 (880)
T PRK03918        620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE  690 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444445555555555554     34444444444444444444444444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.99  E-value=1.8e-05  Score=96.46  Aligned_cols=281  Identities=21%  Similarity=0.240  Sum_probs=202.9

Q ss_pred             hhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh--------------hhhH
Q 037185          240 RLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS--------------DRNN  305 (533)
Q Consensus       240 ~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls--------------~~d~  305 (533)
                      ....++.-..++..++..+++|++++..++++...-++...+-.+...+|..-+..++..|.              -++.
T Consensus      1081 l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~ 1160 (1930)
T KOG0161|consen 1081 LQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA 1160 (1930)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33344444566777888899999999988888887777766666666666666655555554              2233


Q ss_pred             HHHH------------------HHHHHhhH--------------HhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185          306 EVAE------------------LKIALSDA--------------EEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQG  353 (533)
Q Consensus       306 EIr~------------------LK~~lsDA--------------eeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~  353 (533)
                      +|.+                  ++...+|+              -+++-.+|+.++.++..|..+..++...-...+..+
T Consensus      1161 e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~ 1240 (1930)
T KOG0161|consen 1161 EVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD 1240 (1930)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence            3333                  33222221              235667888888888888888888888878888888


Q ss_pred             hhHHHHHHHhHHHHhhhhch---hhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH-------HhHHHH
Q 037185          354 KALEDKIRQCETEKMEITGL---HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLM-------AEKDEI  423 (533)
Q Consensus       354 ~~lEdeirqleaEK~E~~~~---~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~-------~EK~~l  423 (533)
                      +.+|+++..+...-.++..+   +.+|...++.|+..+.-.+.+.+..++.+++....+...++.+.       .++..+
T Consensus      1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l 1320 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSAL 1320 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888876666653   24578899999999999999999999999988777777666554       478888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185          424 NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVDRQRMVILDAAEEKREAIR  502 (533)
Q Consensus       424 ~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve~Q~~~i~e~aEeKREAIR  502 (533)
                      .+.+.+|--|++.--+++..=.+-.+.|+..+.+..+++...++...++... ..++|+.-.+...-+.+ +++--++-=
T Consensus      1321 ~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~-~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1321 ENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQE-LEEQIEAAN 1399 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence            8888888888888888887777777888899999999999998888887765 78888776665555444 334444555


Q ss_pred             HHhhhhHhhhhh-HHHHHHH
Q 037185          503 QLCFSLEHYRSG-YQELRQA  521 (533)
Q Consensus       503 QLCfslehyr~~-y~~L~~~  521 (533)
                      +.|-+|+--|++ -+.|..+
T Consensus      1400 ~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred             HHHHHHHHHHHHHHhHHHHH
Confidence            777787777766 3444433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.93  E-value=1.9e-05  Score=96.22  Aligned_cols=159  Identities=23%  Similarity=0.311  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhh
Q 037185          232 NYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRN  304 (533)
Q Consensus       232 ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d  304 (533)
                      .+|+.|+.....++   +.+.+|...-+.++..+..++.++++.+.|.+.-.+...+|...+..++..|.       +++
T Consensus       964 ~~~~~l~~e~~~~~---e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen  964 NKLKNLEEEINSLD---ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433   33333333334444444444455555444444444444444444444443333       555


Q ss_pred             HHHHHHHHHHhhHHhhhc-----------------hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Q 037185          305 NEVAELKIALSDAEEKFT-----------------LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEK  367 (533)
Q Consensus       305 ~EIr~LK~~lsDAeeK~s-----------------~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK  367 (533)
                      ..+++|...+.++.+.+.                 .|-.++++.+-.++...+.+..+.++++.++.-+++++..-.+..
T Consensus      1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666665554                 233333444444444444444444444444444555544444444


Q ss_pred             hhhhchhhHhhhhhhhHHHHHHHHHhhhhh
Q 037185          368 MEITGLHEAQERGMQSEINQLKVEVCERDN  397 (533)
Q Consensus       368 ~E~~~~~~~q~~~L~gEie~Lk~El~~~~~  397 (533)
                      ++++.    +..+|.++++.|+.++.+.+.
T Consensus      1121 ~K~ek----~r~dL~~ele~l~~~Lee~~~ 1146 (1930)
T KOG0161|consen 1121 AKAER----QRRDLSEELEELKEELEEQGG 1146 (1930)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence            45544    778888888888888877633

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.91  E-value=4.6e-05  Score=89.30  Aligned_cols=207  Identities=21%  Similarity=0.285  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh-------
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF-------  321 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~-------  321 (533)
                      +++..+.+.+.+++..+....+.|..++.++..-..++.+++...-.++..+..++.+|..++........+.       
T Consensus       246 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~  325 (1163)
T COG1196         246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL  325 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666667777777777777777766666655555555555555444544444444444444333321       


Q ss_pred             ---chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhH
Q 037185          322 ---TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNR  398 (533)
Q Consensus       322 ---s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~  398 (533)
                         .-......+++.........+......+...+...+.....+..+..+.-.-+......+..++..+..++...+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  405 (1163)
T COG1196         326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE  405 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11112222222222112222222233322222223333331111111111111222333444444444445455555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185          399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH  455 (533)
Q Consensus       399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~  455 (533)
                      |..+...++.+..+++.+..+...+.+++..+..++..-+..|..++.++..++-..
T Consensus       406 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (1163)
T COG1196         406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL  462 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555556666666666666666666666666666666555444

>TIGR00606 rad50 rad50

Probab=98.80  E-value=0.0001  Score=87.26  Aligned_cols=152  Identities=13%  Similarity=0.219  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185          224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR  303 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~  303 (533)
                      ..++..|+++|++|+.......- ...+..+++.+..++.+++.+..++..+...++.-..++..||.+|..        
T Consensus       798 ~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e--------  868 (1311)
T TIGR00606       798 QMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE--------  868 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            66677777777777765543321 111222233333333333333333333333333333333444333333        


Q ss_pred             hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhh
Q 037185          304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQS  383 (533)
Q Consensus       304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~g  383 (533)
                         ++..+..++.   ++- .+.++..+|..|.+++..+...+.+.+..+.-+..++..+.+++.++..-.......+++
T Consensus       869 ---l~~~klkl~~---~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  941 (1311)
T TIGR00606       869 ---LKSEKLQIGT---NLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQD  941 (1311)
T ss_pred             ---HHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2333333332   333 566777777777777777777777666666667777777766665555444444555555


Q ss_pred             HHHHHHHH
Q 037185          384 EINQLKVE  391 (533)
Q Consensus       384 Eie~Lk~E  391 (533)
                      ++..++..
T Consensus       942 ~~~~~~~~  949 (1311)
T TIGR00606       942 KVNDIKEK  949 (1311)
T ss_pred             HHHHHHHH
Confidence            55554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.80  E-value=2.4e-05  Score=88.77  Aligned_cols=307  Identities=17%  Similarity=0.197  Sum_probs=203.6

Q ss_pred             hHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh------------------hhhhhhhhhHHhHHHHHHHHHHHHHHHHHH-
Q 037185          177 YEDKLRVLNLSLQLSEEEVARLKSELHSQIE------------------SAKRDVNIKEADLEMERRQVFELQNYVREL-  237 (533)
Q Consensus       177 lEdELreaneKL~~sEEe~~rlk~el~k~~~------------------~a~~dl~i~k~kLe~ee~ei~~LQ~~v~EL-  237 (533)
                      +-.|.--.+..|+....+...+.+++.+|.+                  .....+.+.....+.....|..||   .+| 
T Consensus         8 ~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq---eELr   84 (775)
T PF10174_consen    8 LQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ---EELR   84 (775)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH---HHHH
Confidence            3334444456666666666666666666431                  333345566666666666666666   333 


Q ss_pred             ------------HHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhH
Q 037185          238 ------------ETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNN  305 (533)
Q Consensus       238 ------------E~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~  305 (533)
                                  +.+......-.. +-+.++.+..|+++.+.++.++.-++.       .+-++|.+|..++..|..++.
T Consensus        85 ~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~-------~lE~~q~~~e~~q~~l~~~~e  156 (775)
T PF10174_consen   85 AQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRK-------TLEELQLRIETQQQTLDKADE  156 (775)
T ss_pred             HhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence                        111111111111 333445555666666666665555553       456789999999999999999


Q ss_pred             HHHHHHHHHhhHHh--hhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------------HHHHHHh
Q 037185          306 EVAELKIALSDAEE--KFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKAL--------------------EDKIRQC  363 (533)
Q Consensus       306 EIr~LK~~lsDAee--K~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~l--------------------Edeirql  363 (533)
                      +|+.|..+|-.+--  +-..+-..+..-|..+--...+|+..|..|+-....+                    ..-|..-
T Consensus       157 ei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K  236 (775)
T PF10174_consen  157 EIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK  236 (775)
T ss_pred             HHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence            99999998821100  1112223345567788888899999999998877444                    2222222


Q ss_pred             HHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185          364 ETEKMEITGLHEAQERGMQSEINQLKVEVCERDN-------RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS  436 (533)
Q Consensus       364 eaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~-------~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s  436 (533)
                      .+..+.++.    ..+.|..||..|+....-...       .++.-......+|.++|.+.-|.+.-+..+-+|-+.+.+
T Consensus       237 d~ki~~lEr----~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~  312 (775)
T PF10174_consen  237 DTKIASLER----MLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLET  312 (775)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333    445578888888665543333       445545555667788999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 037185          437 RDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKR  498 (533)
Q Consensus       437 Rd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKR  498 (533)
                      ..+.-..|=.||.-|+..-+..=..+..+...|+.||.++.+=+...+++...|....++|-
T Consensus       313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~  374 (775)
T PF10174_consen  313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS  374 (775)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888888888888999998888888888777777777777653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.74  E-value=0.00013  Score=83.09  Aligned_cols=272  Identities=21%  Similarity=0.256  Sum_probs=147.8

Q ss_pred             hhHHhHHHH--HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 037185          215 IKEADLEME--RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQER  292 (533)
Q Consensus       215 i~k~kLe~e--e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqer  292 (533)
                      |...+++++  ..++..+|..+..   ..+.....-.+|..+++.+...+.+-..+|-||..++.+|+.--..+-|.+..
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~---~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~  365 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLET---LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ  365 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666  4467888844444   44444444688999999999999999999999999999998887777777777


Q ss_pred             HHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----------
Q 037185          293 IAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIR-----------  361 (533)
Q Consensus       293 i~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeir-----------  361 (533)
                      |..+...++....+|.+|+..+--.+.|           |..|+..+..|+..|++-+.+.....+.+.           
T Consensus       366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~k-----------i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~  434 (775)
T PF10174_consen  366 IEKLQEEKSRLQGEIEDLRDMLDKKERK-----------INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEA  434 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence            7777777777777777766665533333           333333333333333322222221222221           


Q ss_pred             -----HhHHHHhhhhchh----hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHH-------HH
Q 037185          362 -----QCETEKMEITGLH----EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEI-------NA  425 (533)
Q Consensus       362 -----qleaEK~E~~~~~----~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l-------~~  425 (533)
                           ....++.-...-+    +-.....+.+++.++.++.+....|..|...+++-..-++.+..+.+.|       ++
T Consensus       435 ~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s  514 (775)
T PF10174_consen  435 LETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDS  514 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhh
Confidence                 1111111111100    0011222333333333333333344444444333333333333322222       34


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHH-------------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037185          426 KVNTLMAEARSRDNHIGQIEEHSRK-------------LHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILD  492 (533)
Q Consensus       426 kv~~L~ad~~sRd~~I~qme~hl~q-------------L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e  492 (533)
                      .|.+|-..+....+++..|+..+..             |.-+-+..-..++.++.-|+.|...+.++|++-.-.-..|.+
T Consensus       515 ~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~  594 (775)
T PF10174_consen  515 EIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGE  594 (775)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5555555665655666666655543             233334445556667777788887777777775555555555


Q ss_pred             hhhHHHHH
Q 037185          493 AAEEKREA  500 (533)
Q Consensus       493 ~aEeKREA  500 (533)
                      .+.+=++|
T Consensus       595 LekeLek~  602 (775)
T PF10174_consen  595 LEKELEKA  602 (775)
T ss_pred             HHHHHHHh
Confidence            55543333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=98.74  E-value=0.00042  Score=77.75  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185          408 SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH  452 (533)
Q Consensus       408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~  452 (533)
                      .++.++..+..+++.+..++..|.+....-...|.+++..+..|.
T Consensus       388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555555555555555555555555443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=0.00034  Score=81.81  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=164.2

Q ss_pred             hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH---hhhchhHhhhhHHHHHHHH
Q 037185          261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE---EKFTLDKAQLQSEMFCLLE  337 (533)
Q Consensus       261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe---eK~s~EKa~l~aEiskL~E  337 (533)
                      +...-..+.+...+|+.+|..=-++-.+.+++++++..++..+..+|.+.+...++++   ++...+...++.||.+|.+
T Consensus       375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~  454 (1293)
T KOG0996|consen  375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE  454 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence            4444445555666777777776678889999999999999999999998888777654   6777788888899998887


Q ss_pred             HHHHHHHHHH----HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185          338 KQALLDARLK----EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY  413 (533)
Q Consensus       338 ~~~~Le~kL~----e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~  413 (533)
                      ....++..|.    ++.-.-..+-+++..++.+-+-...    +-.+..|++--...++......-+++-+.+..++.++
T Consensus       455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~----~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L  530 (1293)
T KOG0996|consen  455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK----QVNEARSELDVAESELDILLSRHETGLKKVEELKGKL  530 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555554    4555555566777777776666554    7778888888888888888888888999999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 037185          414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELEN  481 (533)
Q Consensus       414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~  481 (533)
                      ...++.+..-++.|..+++++.++..++++.+..|-+++.+.       .++...+..+|.+|.|+-.
T Consensus       531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~-------~~~~~~~~~~rqrveE~ks  591 (1293)
T KOG0996|consen  531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEE-------RNLKSQLNKLRQRVEEAKS  591 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887       4444455555555555443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=0.00045  Score=76.11  Aligned_cols=278  Identities=15%  Similarity=0.223  Sum_probs=159.4

Q ss_pred             HHHhhhHHHHHhhHHHHHHhhh--------hhhhh--hhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 037185          186 LSLQLSEEEVARLKSELHSQIE--------SAKRD--VNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKEL  255 (533)
Q Consensus       186 eKL~~sEEe~~rlk~el~k~~~--------~a~~d--l~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~  255 (533)
                      .|++.++++.++++.+..|+.+        ..+.+  ++..+..++.-+.|+..||..+.+|....+.=+||.+++.+.-
T Consensus       259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn  338 (581)
T KOG0995|consen  259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMN  338 (581)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            3456677777778777777664        33333  4556666666688888888888888888777789988887765


Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh--hchhHhhhhHHHH
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK--FTLDKAQLQSEMF  333 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK--~s~EKa~l~aEis  333 (533)
                      -....|+..|..++.+.+.|..+.=..   -.+.++.+..+++.+-+.+.-|+.|+-..+.-.-+  +.||-+..     
T Consensus       339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~---~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~-----  410 (581)
T KOG0995|consen  339 LERNKLKRELNKIQSELDRLSKEVWEL---KLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAAT-----  410 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcc-----
Confidence            566666666666666555554443111   23347788888998999999999988874444443  66665542     


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185          334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY  413 (533)
Q Consensus       334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~  413 (533)
                      ....=+....-.|.+|   |..+..++.+.+.+++           +|+..++.+...+.++......+.=.+..+..++
T Consensus       411 ~~~d~k~~V~~~l~el---~~ei~~~~~~~~~~~~-----------tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~  476 (581)
T KOG0995|consen  411 NGVDLKSYVKPLLKEL---LDEISEELHEAENELE-----------TLQEHFSNKASTIEEKIQILGEIELELKKAESKY  476 (581)
T ss_pred             ccccchhHhHHHHHHH---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222333334443   2334444444444333           4455555444444333333333333333334444


Q ss_pred             HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185          414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA  493 (533)
Q Consensus       414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~  493 (533)
                      ++...|-....          +.=+-+|.+|++||++|-+.--.-+..+          -..|.    .++.--..++-.
T Consensus       477 ~~~k~e~eee~----------~k~~~E~e~le~~l~~l~l~~~~~m~~a----------~~~v~----s~e~el~~~~~~  532 (581)
T KOG0995|consen  477 ELKKEEAEEEW----------KKCRKEIEKLEEELLNLKLVLNTSMKEA----------EELVK----SIELELDRMVAT  532 (581)
T ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----HHHHHHHHHHHH
Confidence            44444333222          2346689999999999876542222222          22222    233333344555


Q ss_pred             hhHHHHHH-HHHhhhhH
Q 037185          494 AEEKREAI-RQLCFSLE  509 (533)
Q Consensus       494 aEeKREAI-RQLCfsle  509 (533)
                      .+++|.+| -||-|-|+
T Consensus       533 ~~eer~ki~~ql~~~i~  549 (581)
T KOG0995|consen  533 GEEERQKIAKQLFAVID  549 (581)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67777777 77776554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.54  E-value=0.00014  Score=71.44  Aligned_cols=225  Identities=19%  Similarity=0.267  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHH---HhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 037185          166 TYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH---SQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLS  242 (533)
Q Consensus       166 ~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~---k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~  242 (533)
                      ..++...++..++.+|..++.++...|.++.-+..-+.   ..+.-+-.-+.....+|...++......+.++.|+..  
T Consensus         9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r--   86 (237)
T PF00261_consen    9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR--   86 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Confidence            44567778888888888888888888888877752222   1111222224566667777777777766666667644  


Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185          243 ESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT  322 (533)
Q Consensus       243 ~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s  322 (533)
                              .....+.+..|..+|..+...+....+|++.=-+.+.-+...+.+....+...+..|..|+..+..+..+  
T Consensus        87 --------~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~--  156 (237)
T PF00261_consen   87 --------EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN--  156 (237)
T ss_dssp             --------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--
Confidence                    3445577888888888888877777778765556566666777777776667777777766666644433  


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185          323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL  402 (533)
Q Consensus       323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L  402 (533)
                               +-.|.-.......+...++.+++.|..+++..+.--                         ..-+..|..|
T Consensus       157 ---------lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra-------------------------e~aE~~v~~L  202 (237)
T PF00261_consen  157 ---------LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA-------------------------EFAERRVKKL  202 (237)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
T ss_pred             ---------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
Confidence                     222222222222333332222233444444333311                         1233466677


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh
Q 037185          403 NKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS  436 (533)
Q Consensus       403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s  436 (533)
                      .+.|+.|..++.........+...++..++++++
T Consensus       203 e~~id~le~eL~~~k~~~~~~~~eld~~l~el~~  236 (237)
T PF00261_consen  203 EKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7777777777777777777777777777777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.52  E-value=0.00073  Score=82.20  Aligned_cols=331  Identities=19%  Similarity=0.219  Sum_probs=205.8

Q ss_pred             HhhHHHHHHHHHHHhhhHHHHHhhHHH--------------HHHhhh------hhhhhhhhhHHhHHHHH-HHHHHHHHH
Q 037185          175 IQYEDKLRVLNLSLQLSEEEVARLKSE--------------LHSQIE------SAKRDVNIKEADLEMER-RQVFELQNY  233 (533)
Q Consensus       175 ielEdELreaneKL~~sEEe~~rlk~e--------------l~k~~~------~a~~dl~i~k~kLe~ee-~ei~~LQ~~  233 (533)
                      ..+=+||.-+|+|+..++-++..||.+              +.++.+      .-+.++.+...-++.++ .....+.++
T Consensus       727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~  806 (1822)
T KOG4674|consen  727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR  806 (1822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567888999999999888888622              111111      22222333333333331 112222233


Q ss_pred             HHHHHHhhhcchHHH-HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 037185          234 VRELETRLSESNFEI-ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI  312 (533)
Q Consensus       234 v~ELE~~~~~l~~s~-~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~  312 (533)
                      +.+|+-.+..|+=.. +++-.+.+.+.++--+|+.++.-|.++......-...+..++.+|+.++..+++++.+|+..++
T Consensus       807 i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~  886 (1822)
T KOG4674|consen  807 IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT  886 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            444433332222111 2233344567777778888888888888888888888999999999999999999999999888


Q ss_pred             HHhhHHhhhchh-HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185          313 ALSDAEEKFTLD-KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE  391 (533)
Q Consensus       313 ~lsDAeeK~s~E-Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E  391 (533)
                      ...+-..+-..+ =+.+-..+.+.+++.+.|..+|+.-..+++-..+...-.+..-..+.--|+-.+-.+-..|+.+..+
T Consensus       887 ~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k  966 (1822)
T KOG4674|consen  887 QLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKK  966 (1822)
T ss_pred             HHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            877666541111 2233334667777777778887765555554444444433333333333444555666666667777


Q ss_pred             HhhhhhHHHHHHHHHHHHHH-----------HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH--------
Q 037185          392 VCERDNRIEALNKIMDSLKL-----------KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH--------  452 (533)
Q Consensus       392 l~~~~~~Ie~LNk~id~Lk~-----------k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~--------  452 (533)
                      +-..+..|..|+..+..|..           +...+..+++.|.+.+..+..-...-+..|..+-..+...+        
T Consensus       967 ~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen  967 ITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777766664           24455566666666666655555555555544444444432        


Q ss_pred             ------HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHh
Q 037185          453 ------MEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA---AEEKREAIRQLC  505 (533)
Q Consensus       453 ------~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~---aEeKREAIRQLC  505 (533)
                            +.|+.++..-..++..+......+..|.+..+.+-...++.   -.+|+.|.+|.-
T Consensus      1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~ 1108 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEV 1108 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHH
Confidence                  78888888888888888889999999988887776666543   356777877753

>PRK01156 chromosome segregation protein; Provisional

Probab=98.51  E-value=0.0048  Score=70.18  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHhhhhhhHh
Q 037185           48 FYHLYQSLAERYDHLTGEL   66 (533)
Q Consensus        48 ~yr~yraLAeryd~~~~el   66 (533)
                      |-.+|..+-+.++.+.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~ei  182 (895)
T PRK01156        164 LERNYDKLKDVIDMLRAEI  182 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=8.1e-05  Score=85.77  Aligned_cols=236  Identities=23%  Similarity=0.346  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037185          219 DLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVET  298 (533)
Q Consensus       219 kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt  298 (533)
                      ++-.-+.++...|+.+..|+..+..       +.......+.|+.+|++.+-+.+..+++++  -.+-.++++++..++.
T Consensus       678 ~l~~~~~~~~~~q~el~~le~eL~~-------le~~~~kf~~l~~ql~l~~~~l~l~~~r~~--~~e~~~~~~~~~~~~e  748 (1174)
T KOG0933|consen  678 KLKQAQKELRAIQKELEALERELKS-------LEAQSQKFRDLKQQLELKLHELALLEKRLE--QNEFHKLLDDLKELLE  748 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cChHhhHHHHHHHHHH
Confidence            3334456666666555555543322       233456788999999999999999999884  3457889999999999


Q ss_pred             chhhhhHHHHHHHHHHhhHHhhh-chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----HHHHhhhhch
Q 037185          299 NLSDRNNEVAELKIALSDAEEKF-TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC----ETEKMEITGL  373 (533)
Q Consensus       299 ~Ls~~d~EIr~LK~~lsDAeeK~-s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql----eaEK~E~~~~  373 (533)
                      .+.+...+|.+....+-+++.++ .+||.        +.+..+.-+.+|++       ++.+|+.+    ++...+.+. 
T Consensus       749 ~v~e~~~~Ike~~~~~k~~~~~i~~lE~~--------~~d~~~~re~rlkd-------l~keik~~k~~~e~~~~~~ek-  812 (1174)
T KOG0933|consen  749 EVEESEQQIKEKERALKKCEDKISTLEKK--------MKDAKANRERRLKD-------LEKEIKTAKQRAEESSKELEK-  812 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHhhhhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999998 67764        45566777777777       44444333    233333332 


Q ss_pred             hhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 037185          374 HEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHM  453 (533)
Q Consensus       374 ~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~  453 (533)
                      +.---+.|+.|++.|+-++...+.+...++..++.|++++..|....+.+...+..+.++++.=+.++...+..+.-+--
T Consensus       813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~  892 (1174)
T KOG0933|consen  813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT  892 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence            22234578999999999999999999999999999999999999999999999999999999999988888887765543


Q ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          454 EHAELIAASESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       454 e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      ..       +......+.....+.+|+.+|.+-
T Consensus       893 ~~-------e~~~~e~~~~~l~~kkle~e~~~~  918 (1174)
T KOG0933|consen  893 SQ-------EKCLSEKSDGELERKKLEHEVTKL  918 (1174)
T ss_pred             HH-------HHHHHHhhcccchHHHHHhHHHHh
Confidence            33       333333455556667777776553

>PRK01156 chromosome segregation protein; Provisional

Probab=98.48  E-value=0.0057  Score=69.56  Aligned_cols=21  Identities=0%  Similarity=0.154  Sum_probs=8.5

Q ss_pred             hhhhHHHHHhhhhhHHHHhhh
Q 037185          258 THQLQGQLKLAQDDVTTLNAK  278 (533)
Q Consensus       258 ik~LQ~~Le~~q~e~a~~k~K  278 (533)
                      ++....++....+++..++.+
T Consensus       471 i~~~~~~i~~l~~~i~~l~~~  491 (895)
T PRK01156        471 INHYNEKKSRLEEKIREIEIE  491 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=0.0023  Score=74.19  Aligned_cols=324  Identities=18%  Similarity=0.263  Sum_probs=164.3

Q ss_pred             HhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHH--HHHHHHHHHHHHHHHH
Q 037185          162 EANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEME--RRQVFELQNYVRELET  239 (533)
Q Consensus       162 ~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~e--e~ei~~LQ~~v~ELE~  239 (533)
                      ++..-.++--++-......|+-..++|+.+|++    |.+|.+|--+.     =.+.-||+.  ..++.+.-+.+..|+.
T Consensus       174 eSlkim~ET~qK~ekI~ell~yieerLreLEeE----KeeL~~Yqkld-----k~rr~lEYtiYdrEl~E~~~~l~~le~  244 (1200)
T KOG0964|consen  174 ESLKIMEETKQKREKINELLKYIEERLRELEEE----KEELEKYQKLD-----KERRSLEYTIYDRELNEINGELERLEE  244 (1200)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHH-----HhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            333334444455556666788999999999998    55555553211     000001111  1111111111222222


Q ss_pred             hhh-----------cchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh---HHHH----HHHHHHHHHHHHHhhchh
Q 037185          240 RLS-----------ESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL---DYER----MQVLKFQERIAKVETNLS  301 (533)
Q Consensus       240 ~~~-----------~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl---e~e~----~ev~kLqeri~~lkt~Ls  301 (533)
                      ...           .++.-.+++..+...+++|...|..+-+|..++.++-   -+.+    -++.+||++|+.-+.+-.
T Consensus       245 ~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~  324 (1200)
T KOG0964|consen  245 DRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRN  324 (1200)
T ss_pred             HHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhh
Confidence            221           2222335555566666666666666665544444331   1111    245667777776555444


Q ss_pred             hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh--hHhhh
Q 037185          302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH--EAQER  379 (533)
Q Consensus       302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~--~~q~~  379 (533)
                      ..-|...+++..+.+-...+    +.+.-.-..|.++...+..+|..       ++.+.+-|.+-....+..-  +.---
T Consensus       325 ~~l~~l~~~~~ki~e~~~EL----~~I~Pky~~l~~ee~~~~~rl~~-------l~~~~~~l~~Kqgr~sqFssk~eRDk  393 (1200)
T KOG0964|consen  325 LALHVLQKVKDKIEEKKDEL----SKIEPKYNSLVDEEKRLKKRLAK-------LEQKQRDLLAKQGRYSQFSSKEERDK  393 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHhhccccccCcHHHHHH
Confidence            44444444444444333221    12223334555556666666665       5555555555332222110  11122


Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI  459 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~  459 (533)
                      .+..+|+.|+.-+.+.......+.+++++++..+.-.-+++-.++.-|       ++=..+|.+.+.....+.-+--++.
T Consensus       394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si-------~e~~~r~~~~~~~~~~~k~~~del~  466 (1200)
T KOG0964|consen  394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSI-------NETKGRMEEFDAENTELKRELDELQ  466 (1200)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            466677777776666666666666666666655544444443333333       2222233333333333434444455


Q ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHhhhhHhhh-hhH
Q 037185          460 AASESSRKLVDELRFRVKELENEVDRQRMVILDAAE----EKREAIRQLCFSLEHYR-SGY  515 (533)
Q Consensus       460 ~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aE----eKREAIRQLCfslehyr-~~y  515 (533)
                      ...-.++.-=..|+.....++..|.++...+-...-    -=--+||++|   ++|| +||
T Consensus       467 ~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~---e~~k~ngv  524 (1200)
T KOG0964|consen  467 DKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIK---EELKPNGV  524 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHH---HHhccccc
Confidence            555667777778888888899998887765543322    1234677776   7777 554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.42  E-value=0.0028  Score=63.32  Aligned_cols=77  Identities=16%  Similarity=0.283  Sum_probs=54.1

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      .....++.++.++..++..++.|++.+......++.-|..++..+.       +++.+|.-|+..+.-....|--|...|
T Consensus        68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L  147 (312)
T PF00038_consen   68 KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL  147 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            4445667777777888888888888888888888888888887777       566666666666665555555555555


Q ss_pred             hHHH
Q 037185          329 QSEM  332 (533)
Q Consensus       329 ~aEi  332 (533)
                      .+.|
T Consensus       148 ~~~~  151 (312)
T PF00038_consen  148 REQI  151 (312)
T ss_dssp             STT-
T ss_pred             hhcc
Confidence            5555

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.40  E-value=0.00038  Score=68.36  Aligned_cols=115  Identities=21%  Similarity=0.237  Sum_probs=74.4

Q ss_pred             HHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 037185          172 GRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERL  251 (533)
Q Consensus       172 ~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei  251 (533)
                      +||..++++|-.+..++...+.++.                  -...++.-.+.++..|++++.-|+..          +
T Consensus         1 kK~~~l~~eld~~~~~~~~~~~~l~------------------~~~~~~~~aE~e~~~l~rri~~lE~~----------l   52 (237)
T PF00261_consen    1 KKIQQLKDELDEAEERLEEAEEKLK------------------EAEKRAEKAEAEVASLQRRIQLLEEE----------L   52 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHCC----------C
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence            4677788888777777777666532                  23345556688999999888888844          3


Q ss_pred             HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhh
Q 037185          252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKF  321 (533)
Q Consensus       252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~  321 (533)
                      -+..+.+...+..|..+.+......+.+       -.|..|.......+..++..++..+....++..|+
T Consensus        53 e~~eerL~~~~~kL~~~e~~~de~er~~-------k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~  115 (237)
T PF00261_consen   53 ERAEERLEEATEKLEEAEKRADESERAR-------KVLENREQSDEERIEELEQQLKEAKRRAEEAERKY  115 (237)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666667776666554444443       34555666666666666666677666666666664

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.40  E-value=0.0017  Score=64.89  Aligned_cols=209  Identities=22%  Similarity=0.289  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhh
Q 037185          304 NNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQS  383 (533)
Q Consensus       304 d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~g  383 (533)
                      ..+|++|+..+.+    ++.||+.+..++..|..+...+..++...-..+..++.++..+..+.-+...    .+..|+.
T Consensus        53 e~el~~lr~~id~----~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~----~r~~le~  124 (312)
T PF00038_consen   53 EEELRELRRQIDD----LSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL----ARVDLEN  124 (312)
T ss_dssp             HHHHHCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             hhHHHHhHHhhhh----HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hHhHHHH
Confidence            3445555544443    3456777777777777777777777777666777777776666655555443    4455555


Q ss_pred             HHHHHHHHHhhhh----hHH--------------------HHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHhh---
Q 037185          384 EINQLKVEVCERD----NRI--------------------EALNKIMDSLKLKYDMLMA-EKDEINAKVNTLMAEAR---  435 (533)
Q Consensus       384 Eie~Lk~El~~~~----~~I--------------------e~LNk~id~Lk~k~e~L~~-EK~~l~~kv~~L~ad~~---  435 (533)
                      .|..|++++.-..    .+|                    ..|...|.+++..|+.+.. =+..+.+|...=+.+++   
T Consensus       125 ~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~  204 (312)
T PF00038_consen  125 QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQS  204 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccc
Confidence            5555555442211    122                    2234445555555553332 12233333333333332   


Q ss_pred             -hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhh
Q 037185          436 -SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSG  514 (533)
Q Consensus       436 -sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~  514 (533)
                       .-...+...-.-+..++.....|-+..+.+......|..++.+|+.....++...-..-..+..-|++|..-+.++-.-
T Consensus       205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence             3333344445555556666666666666677777777777777777777777776666777778899999999999999


Q ss_pred             HHHHHH
Q 037185          515 YQELRQ  520 (533)
Q Consensus       515 y~~L~~  520 (533)
                      |+.|..
T Consensus       285 y~~Ll~  290 (312)
T PF00038_consen  285 YQELLD  290 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.0019  Score=75.06  Aligned_cols=298  Identities=18%  Similarity=0.247  Sum_probs=151.9

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHh------hhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037185          171 LGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQ------IESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSES  244 (533)
Q Consensus       171 ~~RiielEdELreaneKL~~sEEe~~rlk~el~k~------~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l  244 (533)
                      .+.+.+.+.+|+...--|...|.++.-++.+-++|      +.+..+++...+.+++..  +...++   .++..-++.+
T Consensus       676 l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~---~~~~~~~e~v  750 (1174)
T KOG0933|consen  676 LQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN--EFHKLL---DDLKELLEEV  750 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHH---HHHHHHHHHH
Confidence            45566677777777777777777777665444443      346666666555555443  122222   2222222223


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhH---Hhhh
Q 037185          245 NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDA---EEKF  321 (533)
Q Consensus       245 ~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDA---eeK~  321 (533)
                      .-+..+|......++++++......+.+.-|++-=+   +++.              ++..+|+.+++.+...   -+|.
T Consensus       751 ~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re---~rlk--------------dl~keik~~k~~~e~~~~~~ek~  813 (1174)
T KOG0933|consen  751 EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE---RRLK--------------DLEKEIKTAKQRAEESSKELEKR  813 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH---hHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            333355555566666666666666555554443221   2222              3333344444333222   2344


Q ss_pred             chhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHH
Q 037185          322 TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEA  401 (533)
Q Consensus       322 s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~  401 (533)
                      -.|.-.|..|+-.|..++.+.+..|...+.+|..++.++-.+++.-...           .+.-..+.+++.+-.+.+-.
T Consensus       814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~-----------~~~~~~~~~el~~~k~k~~~  882 (1174)
T KOG0933|consen  814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV-----------EKDVKKAQAELKDQKAKQRD  882 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HhHHHHHHHHHHHHHHHHHh
Confidence            4555677777888888888888888886666666666666665533322           22233333333333334444


Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhh-----------------Hh
Q 037185          402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS-----------------ES  464 (533)
Q Consensus       402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~-----------------~~  464 (533)
                      .+..|..+-.+.+-..+|+.....++..|--+++.-...-+.+...+.-|.-+|.-|-++-                 -.
T Consensus       883 ~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~  962 (1174)
T KOG0933|consen  883 IDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHE  962 (1174)
T ss_pred             hhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhH
Confidence            4444444444444444444333333333333333222222223333333333333222111                 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037185          465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAI  501 (533)
Q Consensus       465 ~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAI  501 (533)
                      ++..+..|..+.+.|++-|..+....+|.+|+|--|+
T Consensus       963 are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~l  999 (1174)
T KOG0933|consen  963 AREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAAL  999 (1174)
T ss_pred             HHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            4555666677777777777777777777777765444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.002  Score=75.80  Aligned_cols=223  Identities=15%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185          257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL  336 (533)
Q Consensus       257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~  336 (533)
                      +++.|..+++.+...+..+++-.++-..++.++|..|..|.-       ....+...+.+...++-.+-..+.+++-++.
T Consensus       413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~-------~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~e  485 (1293)
T KOG0996|consen  413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE-------LLEKEERELDEILDSLKQETEGIREEIEKLE  485 (1293)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            344444444444443333333343333444444444433333       2233333344444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185          337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML  416 (533)
Q Consensus       337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L  416 (533)
                      ++...+..++-+...+.+..+.++.-+..-......    +-.+|++.+...++.+.+....|..+-..|.++|.++...
T Consensus       486 kel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~----~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~  561 (1293)
T KOG0996|consen  486 KELMPLLKQVNEARSELDVAESELDILLSRHETGLK----KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK  561 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            444444444444444444444444444332222221    3446677777777777777777777666666666666666


Q ss_pred             HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 037185          417 MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV-------  489 (533)
Q Consensus       417 ~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~-------  489 (533)
                      ..+...+.....+|......+..++                     ++++...+.-+.+-+-|..-...+...       
T Consensus       562 ~k~l~~~~~e~~~~~~~~~~~rqrv---------------------eE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~G  620 (1293)
T KOG0996|consen  562 EKELPKLRKEERNLKSQLNKLRQRV---------------------EEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYG  620 (1293)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccc
Confidence            6666555555555554444444444                     555555555556655555555444333       


Q ss_pred             ---HhhhhhHHH-HHHHHHhhhhHhh
Q 037185          490 ---ILDAAEEKR-EAIRQLCFSLEHY  511 (533)
Q Consensus       490 ---i~e~aEeKR-EAIRQLCfslehy  511 (533)
                         =+.+-..|- =||+-.|=.|||.
T Consensus       621 RLGDLg~Id~kYDvAIsTac~~Ldyi  646 (1293)
T KOG0996|consen  621 RLGDLGAIDEKYDVAISTACARLDYI  646 (1293)
T ss_pred             ccccccccchHHHHHHHHhccccceE
Confidence               112223444 3888888888774

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.32  E-value=0.0018  Score=78.89  Aligned_cols=298  Identities=19%  Similarity=0.227  Sum_probs=160.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 037185          168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFE  247 (533)
Q Consensus       168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s  247 (533)
                      ..+-++|.+|+++|+.++.||+--..++-.+-.++...+..+..=+....-++...-..+-.++.-...|++.+      
T Consensus       801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~------  874 (1822)
T KOG4674|consen  801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKL------  874 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            35668899999999999999766555555554444433322211111111111111222222221112222111      


Q ss_pred             HHHHHHHHHhhhhhHHHHHhhh-----hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185          248 IERLMKELEGTHQLQGQLKLAQ-----DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT  322 (533)
Q Consensus       248 ~~ei~kl~E~ik~LQ~~Le~~q-----~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s  322 (533)
                          ..|..+|+....+...+.     .|++.+-..       +.+..+-|..++.+|.+...+|+.++..+.-+++-+-
T Consensus       875 ----~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~-------Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~  943 (1822)
T KOG4674|consen  875 ----SELEKRLKSAKTQLLNLDSKSSNEDATILEDT-------LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLE  943 (1822)
T ss_pred             ----HHHHHHHHHhHHHHhhccccchhhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111133333333333222     233333333       4455566677777777888888888888887777666


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185          323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL  402 (533)
Q Consensus       323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L  402 (533)
                      ..|+.+.-=-..+-..+.++..++.+++.+...|++++-.+..+++=...-.+.+.-.+.++|..+..++-...+.++..
T Consensus       944 ~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~ 1023 (1822)
T KOG4674|consen  944 SVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQA 1023 (1822)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            66665443333333334444444444444444477777777666655555556677889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh--------------HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH----HHHHHhhHh
Q 037185          403 NKIMDSLKLKYDML--------------MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH----AELIAASES  464 (533)
Q Consensus       403 Nk~id~Lk~k~e~L--------------~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~----~~l~~~~~~  464 (533)
                      |..+..++..+...              +-+-+.+-.++..|.+++..=......+..-.-++|..-    .........
T Consensus      1024 ~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~ 1103 (1822)
T KOG4674|consen 1024 NEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDA 1103 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHH
Confidence            99998887754422              223333344444444444444444444433333333211    122333444


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037185          465 SRKLVDELRFRVKELENE  482 (533)
Q Consensus       465 ~~~~v~eL~~rv~eLE~E  482 (533)
                      +...|+.+..++..|+.+
T Consensus      1104 Leqe~~~~~~~~~~L~~q 1121 (1822)
T KOG4674|consen 1104 LEQEVNELKKRIESLEKQ 1121 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555666666555

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.32  E-value=0.0021  Score=68.60  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037185          398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAAS  462 (533)
Q Consensus       398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~  462 (533)
                      .|..+++.+...+..++.+..+...+.++|..|-.........++++..+|..+..+.+++-.+.
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444555555555555556666777777777777776666654444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.29  E-value=0.013  Score=65.05  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185          221 EMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL  279 (533)
Q Consensus       221 e~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl  279 (533)
                      ...+.+...|+.+++++......+.   .|...|.....++...+..+..++.++..+.
T Consensus       181 ~~~~ee~e~L~~~~kel~~~~e~l~---~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  181 EQEEEEMEQLKQQQKELTESSEELK---EERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455544444444333222   3333344445555555555555555555555

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.29  E-value=0.0025  Score=75.49  Aligned_cols=271  Identities=18%  Similarity=0.278  Sum_probs=147.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI  248 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~  248 (533)
                      +|-+++..+++.|..++.+....|+.....+..+..    +.+.+.-..-.++..+..+..|+.....++.......  .
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~  677 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEE----LKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK--E  677 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            677777777777777777776666665554433322    1111122222222223334444433333332211111  1


Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      ++.......+..+..++..+.++...|...+.....+..  .+.-+....-.+.++..|..+++.+..+..++.-++..+
T Consensus       678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~--~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l  755 (1201)
T PF12128_consen  678 ERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELR--NELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL  755 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456677888888888888888888888766665433  244555555566888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH---HHHHHHHhhhhhHHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI---NQLKVEVCERDNRIEALNKI  405 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi---e~Lk~El~~~~~~Ie~LNk~  405 (533)
                      ......=+....-=...+..+..+...++.+|+.++....+...    |+..++..-   ..+..+.-.....+..+.+.
T Consensus       756 e~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e----Y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  831 (1201)
T PF12128_consen  756 EQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE----YEDWLQEEWDKVDELREEKPELEEQLRDLEQE  831 (1201)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            77665433222111224445444555577777777776666655    666666652   23444444444445555545


Q ss_pred             HHHHHHHHHHhHH----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185          406 MDSLKLKYDMLMA----EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL  451 (533)
Q Consensus       406 id~Lk~k~e~L~~----EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL  451 (533)
                      +..++.++..+..    .+..++..+..+...+..-+..+..+...+..+
T Consensus       832 ~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l  881 (1201)
T PF12128_consen  832 LQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL  881 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444444433222    233333333333333333344443333333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.28  E-value=0.012  Score=64.31  Aligned_cols=177  Identities=18%  Similarity=0.233  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q 037185          340 ALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAE  419 (533)
Q Consensus       340 ~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~E  419 (533)
                      ..|+.+|..+...+..|..++.....-++....-.......++..+..++.|+.+-...|....-++..|+...+.|..|
T Consensus       238 k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~E  317 (522)
T PF05701_consen  238 KDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSE  317 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666666666665333321000112233444555666666666666666666666666667777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-
Q 037185          420 KDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKR-  498 (533)
Q Consensus       420 K~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKR-  498 (533)
                      ...++..+..|......=...|..++..|+.++.+..-..+.-..+...++.|...+..+-.|.+.=+......-++-+ 
T Consensus       318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~  397 (522)
T PF05701_consen  318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK  397 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777766666666777777777777776665555555555556666666666666665555544444433332 


Q ss_pred             --HHHHHHhhhhHhhhhhHH
Q 037185          499 --EAIRQLCFSLEHYRSGYQ  516 (533)
Q Consensus       499 --EAIRQLCfslehyr~~y~  516 (533)
                        .-|.|.++.|.--=.+|+
T Consensus       398 ~k~E~e~~ka~i~t~E~rL~  417 (522)
T PF05701_consen  398 AKEEAEQTKAAIKTAEERLE  417 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence              334555555544444333

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.25  E-value=0.0065  Score=67.24  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch
Q 037185          224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL  300 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L  300 (533)
                      +.++..|+.+|..|+..   |.-..++...|....+++....+.+..+...+..+...-...+.+|.+.|..|..+.
T Consensus       163 e~e~~~l~~~v~~l~~e---L~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  163 EEEVEQLREEVERLEAE---LEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555433   233335566666677777777777777666666666555555555555555555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.23  E-value=0.021  Score=65.19  Aligned_cols=103  Identities=24%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHH---HHHHhhh----------hhhhhhhhhHHhHHHH----HHHHHHH
Q 037185          168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKS---ELHSQIE----------SAKRDVNIKEADLEME----RRQVFEL  230 (533)
Q Consensus       168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~---el~k~~~----------~a~~dl~i~k~kLe~e----e~ei~~L  230 (533)
                      ..|..||.+++.||+.++-.+.....++.||..   ++.+...          -..++++.++..|-..    +.+.-.|
T Consensus        30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENisl  109 (717)
T PF09730_consen   30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISL  109 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            368899999999999999999999999999952   2222211          1222233333333222    6677777


Q ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhh
Q 037185          231 QNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQD  270 (533)
Q Consensus       231 Q~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~  270 (533)
                      |++|--|.+.--.+.-=-=||.++.|.+.-|..+|+.+-.
T Consensus       110 QKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen  110 QKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665543211111113455666666666666655443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.19  E-value=0.0024  Score=74.61  Aligned_cols=236  Identities=21%  Similarity=0.299  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHhhHHHHHHhhh--hhhhhhhhhHHhHHHH-----HHHHHHHHHHHHHHHHhhhcchHHHHH
Q 037185          178 EDKLRVLNLSLQLSEEEVARLKSELHSQIE--SAKRDVNIKEADLEME-----RRQVFELQNYVRELETRLSESNFEIER  250 (533)
Q Consensus       178 EdELreaneKL~~sEEe~~rlk~el~k~~~--~a~~dl~i~k~kLe~e-----e~ei~~LQ~~v~ELE~~~~~l~~s~~e  250 (533)
                      .+-|..+++-|...++++..++..+.....  -...+++..+..++.-     =..|+...+++..++          ++
T Consensus       220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~----------~~  289 (1074)
T KOG0250|consen  220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQE----------EE  289 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Confidence            344566677777777777766544443221  1122233333333332     233444444444444          67


Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS  330 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a  330 (533)
                      |.+.++....||..++..+-.+.+++.++       ...++-|..++......+.||..+++.+-++-.           
T Consensus       290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~-------teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r-----------  351 (1074)
T KOG0250|consen  290 IKKKQEKVDTLQEKIEEKQGKIEEARQKL-------TEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR-----------  351 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-----------
Confidence            88888888888888888888777777766       233445556666666777777777777765433           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH-hhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEK-MEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK-~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                      ++..+.+++.+-+...++.-.....++-+|-.++++- -++    ..+.-++...++.|+.++...+..|..|+..+..+
T Consensus       352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~----~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNEL----GSELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443333344444444444432 111    12444556667777777777776777776666666


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185          410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH  452 (533)
Q Consensus       410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~  452 (533)
                      +.++..--.|++.+..++.       +=-.+|.++-.||+-|.
T Consensus       428 ~~~~~~~~ee~~~i~~~i~-------~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  428 KEKAKEEEEEKEHIEGEIL-------QLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            6666666666666655553       33455666666666553

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.17  E-value=0.0037  Score=69.63  Aligned_cols=63  Identities=27%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             HHhhhhhhhhhhHHHHHH----HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185          432 AEARSRDNHIGQIEEHSR----KLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA  494 (533)
Q Consensus       432 ad~~sRd~~I~qme~hl~----qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a  494 (533)
                      ++.++-|+.++.||.-|-    +|.-+-|.|=.....+.-.+.++..++.+|+-.+.-|+.+|...+
T Consensus       365 e~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE  431 (629)
T KOG0963|consen  365 EEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLE  431 (629)
T ss_pred             ccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            345566666777777664    466677777666666666778888888888888888887776543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.12  E-value=0.0019  Score=63.16  Aligned_cols=75  Identities=23%  Similarity=0.297  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 037185          402 LNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELEN  481 (533)
Q Consensus       402 LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~  481 (533)
                      +.-.++-++.++..|..++..|...|...-.-+.-||--+.+-..|+..|-.-.       +.-+....+||+.++.||+
T Consensus       114 l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~i-------eEy~~~teeLR~e~s~LEe  186 (193)
T PF14662_consen  114 LLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTI-------EEYRSITEELRLEKSRLEE  186 (193)
T ss_pred             HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            344556667777888889999999998888888899999988899998887666       4445567899999999998


Q ss_pred             HH
Q 037185          482 EV  483 (533)
Q Consensus       482 Ev  483 (533)
                      .+
T Consensus       187 ql  188 (193)
T PF14662_consen  187 QL  188 (193)
T ss_pred             HH
Confidence            76

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.12  E-value=0.012  Score=64.66  Aligned_cols=172  Identities=16%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh
Q 037185          224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR  303 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~  303 (533)
                      ..+|..|+.++.+......+|+            ++..++.++..++.|+.+-..|++|+.--......+..+...|...
T Consensus       255 ~~~i~~l~~~i~~~~~~l~~l~------------l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~  322 (569)
T PRK04778        255 EKEIQDLKEQIDENLALLEELD------------LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA  322 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5566666655555444433333            2233333444444455555566666633333334444444555555


Q ss_pred             hHHHHHHHHHHhhHHhhhchh------HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHh
Q 037185          304 NNEVAELKIALSDAEEKFTLD------KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQ  377 (533)
Q Consensus       304 d~EIr~LK~~lsDAeeK~s~E------Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q  377 (533)
                      ......|...+....+.+.+-      -.++..++..|......+...+..-......+++++..+.....++..    .
T Consensus       323 ~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~----e  398 (569)
T PRK04778        323 KEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK----E  398 (569)
T ss_pred             HHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH----H
Confidence            555666666666666665531      223344444444444444444443222333333444443333333332    3


Q ss_pred             hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185          378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL  411 (533)
Q Consensus       378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~  411 (533)
                      +.+++..+..|..+-.+-...|..+...+..++.
T Consensus       399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr  432 (569)
T PRK04778        399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR  432 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555444444455555555544443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.07  E-value=0.0033  Score=67.12  Aligned_cols=43  Identities=14%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185          442 GQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD  484 (533)
Q Consensus       442 ~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve  484 (533)
                      ..++..+..|.-...++......+...+.++.....+++++..
T Consensus       361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~  403 (562)
T PHA02562        361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY  403 (562)
T ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433444444444444444444455544443

>PRK11637 AmiB activator; Provisional

Probab=98.06  E-value=0.0039  Score=65.74  Aligned_cols=48  Identities=10%  Similarity=0.180  Sum_probs=23.3

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185          412 KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI  459 (533)
Q Consensus       412 k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~  459 (533)
                      +...|...+......+..|.++...+...+.+++....+|.-...++.
T Consensus       206 ~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~  253 (428)
T PRK11637        206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444555555555555555555555555544444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.02  E-value=0.01  Score=68.78  Aligned_cols=45  Identities=31%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             HHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcch
Q 037185          201 ELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESN  245 (533)
Q Consensus       201 el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~  245 (533)
                      ++...+..+.=|-++.+++-+..+.++..|+-+|.+|+..++=|+
T Consensus       308 d~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK  352 (1243)
T KOG0971|consen  308 DTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK  352 (1243)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344466666778888888889999999999999888776655

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.97  E-value=0.014  Score=68.62  Aligned_cols=155  Identities=19%  Similarity=0.238  Sum_probs=71.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185          326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI  405 (533)
Q Consensus       326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~  405 (533)
                      +.++..|.+.+..+..+..+|++       +|+++.++-.+--           ....||+.++..+........++.-.
T Consensus       298 ~~l~~ki~~~~~k~~~~r~k~te-------iea~i~~~~~e~~-----------~~d~Ei~~~r~~~~~~~re~~~~~~~  359 (1074)
T KOG0250|consen  298 DTLQEKIEEKQGKIEEARQKLTE-------IEAKIGELKDEVD-----------AQDEEIEEARKDLDDLRREVNDLKEE  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555677777777777777777       5555544433221           12223333333333333333333322


Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185          406 MDSLKLKYDMLMAEKDEINAKVNTLMAEA-RSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD  484 (533)
Q Consensus       406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~-~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve  484 (533)
                      +.+-...+.-+..+.+.++-.|.++.+++ .+=..++.++++.+.              .+.+.|..+...+..|..+.+
T Consensus       360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~--------------~L~~evek~e~~~~~L~~e~~  425 (1074)
T KOG0250|consen  360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLE--------------QLKKEVEKLEEQINSLREELN  425 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            22222223333333333333333333333 222223333333333              334444455555555555555


Q ss_pred             HHHHHHhhhhhHH---HHHHHHHhhhhHhhh
Q 037185          485 RQRMVILDAAEEK---REAIRQLCFSLEHYR  512 (533)
Q Consensus       485 ~Q~~~i~e~aEeK---REAIRQLCfslehyr  512 (533)
                      .=+..+.+..|+|   ..-|+||-=+|..+-
T Consensus       426 ~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  426 EVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666   244666666665554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.92  E-value=0.092  Score=61.25  Aligned_cols=126  Identities=25%  Similarity=0.341  Sum_probs=78.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHH----HHHHHHHHHHHhhhcc
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVF----ELQNYVRELETRLSES  244 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~----~LQ~~v~ELE~~~~~l  244 (533)
                      +|..-+.+|.++|..++.|-  .|++ ++++ +|.+        ++|.-+-++..+.+|.    .||+++.+-++.....
T Consensus       228 eLr~QvrdLtEkLetlR~kR--~EDk-~Kl~-Elek--------mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~kea  295 (1243)
T KOG0971|consen  228 ELRAQVRDLTEKLETLRLKR--AEDK-AKLK-ELEK--------MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEA  295 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hhhH-HHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666665544332  2222 2221 1111        2344444455544443    4555554444443333


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185          245 NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE  309 (533)
Q Consensus       245 ~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~  309 (533)
                      ..-.++.   ...+-++++-+|++.-|.-+...|.++--.+|.-|+||+-.|.++|+.+-.|+..
T Consensus       296 qe~ke~~---k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  296 QEAKERY---KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3222222   2456788888999999999999999999999999999999999999888777765

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.90  E-value=0.031  Score=57.91  Aligned_cols=182  Identities=27%  Similarity=0.338  Sum_probs=114.1

Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHH---HHHHH
Q 037185          269 QDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQA---LLDAR  345 (533)
Q Consensus       269 q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~---~Le~k  345 (533)
                      .+++..|.++-+.--.+|.++-+.+.-+.........+|..||..-.+...+...    |-.++.+|.+...   ....-
T Consensus        33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e----L~~~~~~l~e~~~~~~~~~~~  108 (294)
T COG1340          33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE----LRKEYRELKEKRNEFNLGGRS  108 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhccCCC
Confidence            3445555555444445556666778888888888999999999888877666544    6666666666665   22333


Q ss_pred             HHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 037185          346 LKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINA  425 (533)
Q Consensus       346 L~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~  425 (533)
                      +..       ++..|+.++. +.++.-|--.-+..+...|..|..++.... .+...|-.+..|..+++.+..+-+.+.+
T Consensus       109 ~~~-------ler~i~~Le~-~~~T~~L~~e~E~~lvq~I~~L~k~le~~~-k~~e~~~~~~el~aei~~lk~~~~e~~e  179 (294)
T COG1340         109 IKS-------LEREIERLEK-KQQTSVLTPEEERELVQKIKELRKELEDAK-KALEENEKLKELKAEIDELKKKAREIHE  179 (294)
T ss_pred             HHH-------HHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334       7777777766 333333455567788888998888884444 4445566677777777777777766666


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185          426 KVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK  477 (533)
Q Consensus       426 kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~  477 (533)
                      +|..|--++              ...|-+..++...++.+++-.++++..+.
T Consensus       180 ki~~la~ea--------------qe~he~m~k~~~~~De~Rkeade~he~~v  217 (294)
T COG1340         180 KIQELANEA--------------QEYHEEMIKLFEEADELRKEADELHEEFV  217 (294)
T ss_pred             HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555444              44444445555555444444444444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.86  E-value=0.073  Score=58.35  Aligned_cols=104  Identities=16%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELI  459 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~  459 (533)
                      .|+..++.|+.|+..-...|..+.+........+..|..|...+..++..+.+........+..|-.-|+|+.-+.    
T Consensus       306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea----  381 (522)
T PF05701_consen  306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA----  381 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH----
Confidence            3444455555555444444455444444444445555555555555555555555555566666777777765444    


Q ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185          460 AASESSRKLVDELRFRVKELENEVDRQRMVI  490 (533)
Q Consensus       460 ~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i  490 (533)
                         +.+++.....+..+..+-.+++..+..|
T Consensus       382 ---e~Ak~ea~~~~~E~~~~k~E~e~~ka~i  409 (522)
T PF05701_consen  382 ---EEAKKEAEEAKEEVEKAKEEAEQTKAAI  409 (522)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4444455555555555555555444443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.85  E-value=0.1  Score=59.56  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHcCCCCCCc
Q 037185          465 SRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFLGYKRPAV  530 (533)
Q Consensus       465 ~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~GhKR~~V  530 (533)
                      |+..-+.|--+|.+|-.-..+.--...-+.--=|+-||+|---|..--.+++.|-+-+..-+||++
T Consensus       578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLl  643 (961)
T KOG4673|consen  578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLL  643 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence            333333444444444433333334444455556889999999999999999999999888888863

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.80  E-value=0.064  Score=55.81  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=108.8

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----h---hhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----D---RNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----~---~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      .++-+..++|..+.-+-+++++||+.|+.--..|..-|.-|..-|+    +   +..-=++|+-++--+...++.=+..|
T Consensus        56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm  135 (305)
T PF14915_consen   56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM  135 (305)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh
Confidence            5678889999999999999999999999655556666665555554    2   22333778888888888888889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV  390 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~  390 (533)
                      ..+||.|.+.+..|-.+|...+...+.|+.++......-.|-..+++.-+++|...--++|+
T Consensus       136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE  197 (305)
T PF14915_consen  136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKE  197 (305)
T ss_pred             cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888777677666666655555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.78  E-value=0.097  Score=58.95  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHH
Q 037185          258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLE  337 (533)
Q Consensus       258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E  337 (533)
                      -..||++++.+++++..|..++...++...-|-.-+...+..|..++-.++.++....|. .+++-.=.+=++-|++...
T Consensus        82 E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~-~kLLe~lqsdk~t~SRAls  160 (617)
T PF15070_consen   82 EQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDR-QKLLEQLQSDKATASRALS  160 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccchHHHHHHH
Confidence            345666666666666677777766665444443333344444555555555555544442 2222222233445888889


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          338 KQALLDARLKEWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       338 ~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      -|..|..+|.+       +++.+-++..+||+...
T Consensus       161 QN~eLK~QL~E-------lq~~Fv~ltne~~elt~  188 (617)
T PF15070_consen  161 QNRELKEQLAE-------LQDAFVKLTNENMELTS  188 (617)
T ss_pred             hHHHHHHHHHH-------HHHHHHHHHHhhhHhhH
Confidence            99999999999       99999999999998865

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.77  E-value=0.19  Score=60.14  Aligned_cols=128  Identities=22%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHHHH
Q 037185          218 ADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIAKV  296 (533)
Q Consensus       218 ~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~~l  296 (533)
                      ++++..+.++..++..+.+++..+...   ...+..+...+...+.+++.+..++..|++.....+.+ -..+.+|...+
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  683 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQI---NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI  683 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444666666666666666554332   23444444555555555555555555555554444433 33345555666


Q ss_pred             hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHH-HHHHHHHHHHHHHHHH
Q 037185          297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEM-FCLLEKQALLDARLKE  348 (533)
Q Consensus       297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEi-skL~E~~~~Le~kL~e  348 (533)
                      .+.+..++.++..+++.+....+.+--.+..+..+. ....+..+.++.++..
T Consensus       684 ~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~  736 (1201)
T PF12128_consen  684 EEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQ  736 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666655555444443333222 2333333444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.76  E-value=0.11  Score=63.69  Aligned_cols=25  Identities=24%  Similarity=0.185  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185          476 VKELENEVDRQRMVILDAAEEKREA  500 (533)
Q Consensus       476 v~eLE~Eve~Q~~~i~e~aEeKREA  500 (533)
                      +.+|+...+.|...+.+..++++++
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~  577 (1486)
T PRK04863        553 EDELEQLQEELEARLESLSESVSEA  577 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555544443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.75  E-value=5.9e-06  Score=94.34  Aligned_cols=239  Identities=22%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHH
Q 037185          216 KEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIA  294 (533)
Q Consensus       216 ~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~  294 (533)
                      .+..|+.+-.....|+.++..|+.....|+...+   ...+....++.+|..++.+++.|++||+.+... +..|.+-=+
T Consensus       248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle---eE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKK  324 (859)
T PF01576_consen  248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLE---EEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKK  324 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3344444444555555666666655555543322   233577889999999999999999999998766 555655555


Q ss_pred             HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh
Q 037185          295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH  374 (533)
Q Consensus       295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~  374 (533)
                      .|...|.+.+..+..++..++.....    |..|.+|+..|       ...|...-..+..++-+.+.+.....+...  
T Consensus       325 kL~~~L~el~e~le~~~~~~~~LeK~----k~rL~~EleDl-------~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~--  391 (859)
T PF01576_consen  325 KLERKLQELQEQLEEANAKVSSLEKT----KKRLQGELEDL-------TSELEKAQAAAAELEKKQRKFDKQLAEWKA--  391 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Confidence            66666666666666666655533222    22344444333       333333333444466666665554444432  


Q ss_pred             hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185          375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME  454 (533)
Q Consensus       375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e  454 (533)
                        .-..++.+...+..+.......|-.|...++.+...++.+..++..|.+.|..|..-...=...|..|+.-..+|..+
T Consensus       392 --~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e  469 (859)
T PF01576_consen  392 --KVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQE  469 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHH
Confidence              222444555555555555555666666666666666666666666666666655544444455566666666666666


Q ss_pred             HHHHHHhhHhHHHHHHHH
Q 037185          455 HAELIAASESSRKLVDEL  472 (533)
Q Consensus       455 ~~~l~~~~~~~~~~v~eL  472 (533)
                      ..++-...+.+-..+...
T Consensus       470 ~~El~~~leE~E~~l~~~  487 (859)
T PF01576_consen  470 KEELQEQLEEAEDALEAE  487 (859)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555544444444333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.74  E-value=0.2  Score=59.90  Aligned_cols=185  Identities=21%  Similarity=0.215  Sum_probs=86.2

Q ss_pred             hhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHH-----------
Q 037185          205 QIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVT-----------  273 (533)
Q Consensus       205 ~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a-----------  273 (533)
                      ..+++...++...+++..++.+...|.++|.+++..+..+.--...+.--.++...++.+|+.+-.+..           
T Consensus       488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~  567 (1317)
T KOG0612|consen  488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRK  567 (1317)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhh
Confidence            445666667777777777777777777777666644333321111111112233333333332222211           


Q ss_pred             ---HHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH---HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185          274 ---TLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK---IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK  347 (533)
Q Consensus       274 ---~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK---~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~  347 (533)
                         -+...+..+..++.++++++..+++....+..+-+.+.   .+...-.--+.-+...++++|+.|.+.+..+...+.
T Consensus       568 ~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~  647 (1317)
T KOG0612|consen  568 HSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELL  647 (1317)
T ss_pred             hhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHH
Confidence               11122333334556677777766665443333332222   222222223444555555555555555555555555


Q ss_pred             HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185          348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE  391 (533)
Q Consensus       348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E  391 (533)
                      ..+.-.+...+.+-+.+.+  .+..-|+.....++++.+++..|
T Consensus       648 k~~el~r~~~e~~~~~ek~--~~e~~~e~~lk~~q~~~eq~~~E  689 (1317)
T KOG0612|consen  648 KVEELKRENQERISDSEKE--ALEIKLERKLKMLQNELEQENAE  689 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443333333333333332  23333445555556666655544

>PRK11637 AmiB activator; Provisional

Probab=97.74  E-value=0.044  Score=58.00  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185          423 INAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH  455 (533)
Q Consensus       423 l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~  455 (533)
                      +......|.+....|...+.+++..+....-+.
T Consensus       203 ~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l  235 (428)
T PRK11637        203 QQAQQQKLEQARNERKKTLTGLESSLQKDQQQL  235 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444445555544444444433333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.70  E-value=8.2e-06  Score=93.20  Aligned_cols=196  Identities=19%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             HHHHHhhHHhhhchhHhhhhHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH
Q 037185          310 LKIALSDAEEKFTLDKAQLQSEMFC----LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI  385 (533)
Q Consensus       310 LK~~lsDAeeK~s~EKa~l~aEisk----L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi  385 (533)
                      |...++.+..-+..-|..+..++..    |-+....|..+|.+       ++..+....+....++.    ....|++++
T Consensus       290 l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~e-------l~e~le~~~~~~~~LeK----~k~rL~~El  358 (859)
T PF01576_consen  290 LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQE-------LQEQLEEANAKVSSLEK----TKKRLQGEL  358 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            3333333333333334444444333    44445556666666       33333333333333332    445677888


Q ss_pred             HHHHHHHhhhhhHHHHHH-------HHHHHHHHHHH-------HhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185          386 NQLKVEVCERDNRIEALN-------KIMDSLKLKYD-------MLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL  451 (533)
Q Consensus       386 e~Lk~El~~~~~~Ie~LN-------k~id~Lk~k~e-------~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL  451 (533)
                      +-+..++..-...+..|.       +.++.++.+++       .+..|...+..+|..|......=...+..+++.-..|
T Consensus       359 eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L  438 (859)
T PF01576_consen  359 EDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQL  438 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            877777766655544444       44455555554       4455666677777777777777778888888888999


Q ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHhhhhHhhhhhHH
Q 037185          452 HMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKRE---AIRQLCFSLEHYRSGYQ  516 (533)
Q Consensus       452 ~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKRE---AIRQLCfslehyr~~y~  516 (533)
                      +.+...|+...+.+.+.|.+|......||.+++.++..+-+....-..   ++.-|=..|..+|.-|+
T Consensus       439 ~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e  506 (859)
T PF01576_consen  439 QDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE  506 (859)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887665432221   23334445555555553

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=0.16  Score=59.83  Aligned_cols=222  Identities=18%  Similarity=0.227  Sum_probs=124.0

Q ss_pred             hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHH---HHhhHHhhhchhHhhhhHHHHH
Q 037185          258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKI---ALSDAEEKFTLDKAQLQSEMFC  334 (533)
Q Consensus       258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~---~lsDAeeK~s~EKa~l~aEisk  334 (533)
                      +++.-++|+.+..+..+.-.+=+.-..++-+-++.+..+++++..+.+.++-|+.   .+..-+.++.-.|..|.-+|..
T Consensus       232 l~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kd  311 (1200)
T KOG0964|consen  232 LNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKD  311 (1200)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            3344444444444444433333333445555666666677766666666665544   3333345677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhh-------------------
Q 037185          335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCER-------------------  395 (533)
Q Consensus       335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~-------------------  395 (533)
                      |++.++.=...=..-....+-++++|-+-..|-.+..-    ....|..+...++..|...                   
T Consensus       312 lq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~P----ky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFss  387 (1200)
T KOG0964|consen  312 LQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEP----KYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSS  387 (1200)
T ss_pred             HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCc
Confidence            77777654332221112222245555444444443332    2334444444444444332                   


Q ss_pred             --------hhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185          396 --------DNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK  467 (533)
Q Consensus       396 --------~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~  467 (533)
                              ..+|..++..|.+.+...+-|..|...++..       ...++++|+.++.-++......-++-+..-+...
T Consensus       388 k~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~-------l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~  460 (1200)
T KOG0964|consen  388 KEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE-------LKEKLEEIKELESSINETKGRMEEFDAENTELKR  460 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH
Confidence                    2367777777777777666666666555444       4788888888888888776666566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 037185          468 LVDELRFRVKELENEVDRQRMVI  490 (533)
Q Consensus       468 ~v~eL~~rv~eLE~Eve~Q~~~i  490 (533)
                      -.++|-.+-++|=.|=.+-+..|
T Consensus       461 ~~del~~~Rk~lWREE~~l~~~i  483 (1200)
T KOG0964|consen  461 ELDELQDKRKELWREEKKLRSLI  483 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666644433333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.63  E-value=0.023  Score=55.79  Aligned_cols=97  Identities=24%  Similarity=0.288  Sum_probs=66.9

Q ss_pred             hhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHH
Q 037185          320 KFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRI  399 (533)
Q Consensus       320 K~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~I  399 (533)
                      ..--|.-+|-++|..|++++..|-+....       +-.++.+|.++++.+..    |-..-..-|.+-...+.++..+|
T Consensus        92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~-------lk~~~~eL~~~~~~Lq~----Ql~~~e~l~~~~da~l~e~t~~i  160 (193)
T PF14662_consen   92 QLEKEQQSLVAEIETLQEENGKLLAERDG-------LKKRSKELATEKATLQR----QLCEFESLICQRDAILSERTQQI  160 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhhhh-------HHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHhhH
Confidence            33446677888888888888888887777       88888888887775554    33333444455555566667777


Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          400 EALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       400 e~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      +.|.+-|+..++=...|+.||+.+...+
T Consensus       161 ~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  161 EELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666777777776666654

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.19  Score=58.09  Aligned_cols=104  Identities=17%  Similarity=0.236  Sum_probs=70.6

Q ss_pred             HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhh----------hhHH
Q 037185          262 QGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQ----------LQSE  331 (533)
Q Consensus       262 Q~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~----------l~aE  331 (533)
                      |.+|+--+.-+..+.++-+.|...+..|-++.+.+.-.|+.++..+..|...|+|..-++.--|.-          +.+|
T Consensus       408 qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ise  487 (1118)
T KOG1029|consen  408 QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISE  487 (1118)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHH
Confidence            444555555566677777888888888999999999999999999999999999988776654433          2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      |..|+-.+..+..+|-.+--+.+.+.+++++...
T Consensus       488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~  521 (1118)
T KOG1029|consen  488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS  521 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            5555544444555554444455556666665555

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.61  E-value=0.14  Score=58.49  Aligned_cols=31  Identities=19%  Similarity=0.140  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          338 KQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       338 ~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      --.++..+.+++|.+++-|..+++..++.++
T Consensus       539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~  569 (697)
T PF09726_consen  539 CAESCRQRRRQLESELKKLRRELKQKEEQIR  569 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555555544444444444444444333

; GO: 0016021 integral to membrane

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.57  E-value=0.076  Score=64.95  Aligned_cols=118  Identities=15%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhH
Q 037185          246 FEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDK  325 (533)
Q Consensus       246 ~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EK  325 (533)
                      -....+.++...+.++..++..+++++..++..++... +...++..+..+...+..+...+......+..+.+++    
T Consensus       304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeel----  378 (1486)
T PRK04863        304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQ----  378 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            33344444445555555555555555555554443322 3334455555555555555555555555554443332    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      ..+..++..+.++...|..++.++......++.++.+++..+.
T Consensus       379 eeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~  421 (1486)
T PRK04863        379 EENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ  421 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333444444444444444444444444445555555444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.53  E-value=0.22  Score=55.58  Aligned_cols=167  Identities=17%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEI  248 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~  248 (533)
                      .|+-|++-|       =+|.+-+|.+|.+|-.++.-....+++|..=-+..   .+.++..+.+-|.+--.....+.   
T Consensus        46 ~LNDRLA~Y-------IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~---ye~El~~ar~~l~e~~~~ra~~e---  112 (546)
T KOG0977|consen   46 ELNDRLAVY-------IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK---YEAELATARKLLDETARERAKLE---  112 (546)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH---hhhhHHHHHHHHHHHHHHHHHHH---
Confidence            555555554       46677889999998766665544444442211111   12233333222222211111111   


Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      -+|.++.+.++++...++.+++.++..+.++.-...-...|+.-+..++.....++.+++.||...+--..-+-.=|.++
T Consensus       113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33555556666666666666555555555543333333333333333333333444444444444443333333444445


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e  348 (533)
                      ..|+.-=.+-+.....-|++
T Consensus       193 d~Etllr~d~~n~~q~Llee  212 (546)
T KOG0977|consen  193 DDETLLRVDLQNRVQTLLEE  212 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHH
Confidence            55553333333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.52  E-value=0.041  Score=63.68  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHH
Q 037185          252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSE  331 (533)
Q Consensus       252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aE  331 (533)
                      .-.++.+++..++|...+.+........+.-.+...-.+.|+..+|...+.+.++=.+|.+...|...+.+..--.    
T Consensus       385 ~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s----  460 (980)
T KOG0980|consen  385 REEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS----  460 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            3334455555555555555444444444444555666777777888888888888888888888877765443322    


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037185          332 MFCLLEKQALLDARLKEW  349 (533)
Q Consensus       332 iskL~E~~~~Le~kL~e~  349 (533)
                      |-++.++++.|..+|+++
T Consensus       461 ~~~~~~~~~~L~d~le~~  478 (980)
T KOG0980|consen  461 IDDVEEENTNLNDQLEEL  478 (980)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            237788888888888873

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.50  E-value=0.28  Score=55.12  Aligned_cols=146  Identities=21%  Similarity=0.230  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchh-----hHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185          328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH-----EAQERGMQSEINQLKVEVCERDNRIEAL  402 (533)
Q Consensus       328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~-----~~q~~~L~gEie~Lk~El~~~~~~Ie~L  402 (533)
                      ...+..+...++..+..++++....++.-++.+++|.++-..+..-.     ----.+..+-|-+-++||..--.++-.|
T Consensus       438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~l  517 (594)
T PF05667_consen  438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTREL  517 (594)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34455566677777777777777777778888888887666655421     1112366777777888887777788888


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 037185          403 NKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENE  482 (533)
Q Consensus       403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~E  482 (533)
                      ++.|-.+.-+++--=+..|++      +-.|+. +|+..++.=.+|..||-.-..||...+......    +.+.+||..
T Consensus       518 QkeiN~l~gkL~RtF~v~dEl------ifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~----rEirdLe~q  586 (594)
T PF05667_consen  518 QKEINSLTGKLDRTFTVTDEL------IFRDAK-KDEAARKAYKLLASLHENCSQLIETVEETGTIS----REIRDLEEQ  586 (594)
T ss_pred             HHHHHHHHHHHHhHHHHHHHH------HHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHH
Confidence            888888777765332222221      233333 899999999999999977777777766654433    444566665


Q ss_pred             HH
Q 037185          483 VD  484 (533)
Q Consensus       483 ve  484 (533)
                      ++
T Consensus       587 I~  588 (594)
T PF05667_consen  587 ID  588 (594)
T ss_pred             HH
Confidence            54

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.46  E-value=0.39  Score=57.64  Aligned_cols=101  Identities=24%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHH
Q 037185          282 ERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLE--KQALLDARLKEWELQGKALEDK  359 (533)
Q Consensus       282 e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E--~~~~Le~kL~e~e~~~~~lEde  359 (533)
                      .++.-..+-+.++.++...+.++..+..++..+--+++    +|..+..-++.+-.  ..++++-+++.       ++++
T Consensus       614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e----l~r~~~e~~~~~ek~~~e~~~e~~lk~-------~q~~  682 (1317)
T KOG0612|consen  614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE----LKRENQERISDSEKEALEIKLERKLKM-------LQNE  682 (1317)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            33333333344444444444444444443333333332    33333333444333  33444444444       4555


Q ss_pred             HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhh
Q 037185          360 IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCER  395 (533)
Q Consensus       360 irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~  395 (533)
                      ..|..+|.-.. + +.+++..++.-+..|+++..-+
T Consensus       683 ~eq~~~E~~~~-~-L~~~e~~~~e~~~~lseek~ar  716 (1317)
T KOG0612|consen  683 LEQENAEHHRL-R-LQDKEAQMKEIESKLSEEKSAR  716 (1317)
T ss_pred             HHHHHHHHHHH-H-HhhHHHHHHHHHHHhcccccHH
Confidence            55555444443 1 1223444444444555554443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.45  E-value=0.31  Score=54.42  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=33.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      +.|+.+...+..+.-+..++.+..+.....+..++.++..+++++.+.
T Consensus       421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  468 (650)
T TIGR03185       421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK  468 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777777777777777777777777777766544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.36  E-value=0.091  Score=59.91  Aligned_cols=107  Identities=17%  Similarity=0.250  Sum_probs=75.3

Q ss_pred             HHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037185          414 DMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDA  493 (533)
Q Consensus       414 e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~  493 (533)
                      +.+..-+..++.++..|-.|+..+++.+..|+.++.+|+...-+--..++.+...+.-|+.+..-||+-.--...+=+|.
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL  620 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDL  620 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34555666777888888888999999999999999999876433334678888888899999999998653333322232


Q ss_pred             hhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185          494 AEEKREAIRQLCFSLEHYRSGYQELRQ  520 (533)
Q Consensus       494 aEeKREAIRQLCfslehyr~~y~~L~~  520 (533)
                      =--=-+|=|||=..-.+.|..=+++..
T Consensus       621 fsaLg~akrq~ei~~~~~~~~d~ei~~  647 (697)
T PF09726_consen  621 FSALGDAKRQLEIAQGQLRKKDKEIEE  647 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222335566777777777777666543

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.35  E-value=0.023  Score=57.39  Aligned_cols=102  Identities=22%  Similarity=0.292  Sum_probs=68.2

Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS  330 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a  330 (533)
                      +.++.-.++.-+..|+.++.+...++..+       ..++.++..++++.+..+.+|+++...+.+++.++.--|.  .-
T Consensus        19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~-------~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~~   89 (239)
T COG1579          19 KDRLEPRIKEIRKALKKAKAELEALNKAL-------EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ER   89 (239)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HH
Confidence            44444555566666666666555555444       6777788888888899999999999999999999844333  34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      +...|.-+...+..+...       +++++..+..+..
T Consensus        90 e~~aL~~E~~~ak~r~~~-------le~el~~l~~~~~  120 (239)
T COG1579          90 ELRALNIEIQIAKERINS-------LEDELAELMEEIE  120 (239)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            555565555555555555       6666666666444

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.34  E-value=0.36  Score=52.81  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=15.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhh
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLS  191 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~s  191 (533)
                      .|..++.+++.|++..+..|+.+
T Consensus       113 ~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  113 VLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677777777666666665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.29  E-value=5.7e-05  Score=84.38  Aligned_cols=218  Identities=19%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHh---hchhhhhHHHHHHHHHHhhHHhhhchhHh--hhhHHHHHHHHHHHHHHH
Q 037185          270 DDVTTLNAKLDYERMQVLKFQERIAKVE---TNLSDRNNEVAELKIALSDAEEKFTLDKA--QLQSEMFCLLEKQALLDA  344 (533)
Q Consensus       270 ~e~a~~k~Kle~e~~ev~kLqeri~~lk---t~Ls~~d~EIr~LK~~lsDAeeK~s~EKa--~l~aEiskL~E~~~~Le~  344 (533)
                      .++..++..++.-..++.....+|..|.   ..+.+.+..|..|+..+.+.+.-..+-|.  .--+.|..|..++..+..
T Consensus       192 ~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~  271 (722)
T PF05557_consen  192 SELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLRE  271 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444442   23445677777777666655443211111  112345556666666655


Q ss_pred             HHH---HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHhHH
Q 037185          345 RLK---EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL---NKIMDSLKLKYDMLMA  418 (533)
Q Consensus       345 kL~---e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L---Nk~id~Lk~k~e~L~~  418 (533)
                      .++   ..-..+.+|+++.+-++..-.-++. ...+-..|+-+...|..++..-..-+...   +..-+++...+..|..
T Consensus       272 Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~-~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~  350 (722)
T PF05557_consen  272 ELKHLRQSQENVELLEEEKRSLQRKLERLEE-LEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQ  350 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            544   2222333444444444432222221 22244456666666666665444433332   2334456667778888


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185          419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRM  488 (533)
Q Consensus       419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~  488 (533)
                      +...+-+++.++.++++.++..|..|+..+.++.-+..++-+......+.+.+|..++.=+-+||+-=|.
T Consensus       351 ~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~  420 (722)
T PF05557_consen  351 ENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA  420 (722)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999998888888777777777777777776666666655543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.28  E-value=0.52  Score=53.29  Aligned_cols=219  Identities=15%  Similarity=0.241  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhh-hHHHHhhhhHHHHHH-HHHHHHHHHHH
Q 037185          219 DLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQD-DVTTLNAKLDYERMQ-VLKFQERIAKV  296 (533)
Q Consensus       219 kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~-e~a~~k~Kle~e~~e-v~kLqeri~~l  296 (533)
                      +++.-..++..|+.++.+++.....++--...+.++.+.+..+...++..-+ .|.....++..+-.+ -..|+++-.++
T Consensus       115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~  194 (629)
T KOG0963|consen  115 KQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNL  194 (629)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333567788888888888777666665556666676776666665554433 344444555544444 45678888888


Q ss_pred             hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhh
Q 037185          297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ-------SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME  369 (533)
Q Consensus       297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~-------aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E  369 (533)
                      ..+++.+++-|+.|..++-|..-+.|.=++...       +||+=+.-+..--..++..++.+|..+..++......+.-
T Consensus       195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~  274 (629)
T KOG0963|consen  195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL  274 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            888888888888888888877777776666644       4444444444444445555555555555555444432211


Q ss_pred             hhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 037185          370 ITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSR  449 (533)
Q Consensus       370 ~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~  449 (533)
                                +-...|.++..-++.++..|..|+.+|.+++.   .+..|.....+.|+.|-..+++.+..|.+|.+.|+
T Consensus       275 ----------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~---S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  275 ----------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEA---SLVEEREKHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             ----------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      11244666677777788888888888888764   44556666677777777777888888888887776


Q ss_pred             H
Q 037185          450 K  450 (533)
Q Consensus       450 q  450 (533)
                      -
T Consensus       342 ~  342 (629)
T KOG0963|consen  342 S  342 (629)
T ss_pred             h
Confidence            4

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.28  E-value=0.053  Score=55.86  Aligned_cols=133  Identities=20%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC  363 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql  363 (533)
                      +..+.|+.+-.||.=-..-    +..|+..|.+...-+--+...|.+.+..+.+....+..+...       |+.++..+
T Consensus       128 K~~aRl~aK~~WYeWR~~l----l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~-------L~~e~~~L  196 (325)
T PF08317_consen  128 KTYARLEAKKMWYEWRMQL----LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAE-------LEEELENL  196 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            3345555566666543222    344455555555554555556666666666666666666666       77778777


Q ss_pred             HHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          364 ETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       364 eaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      .+-..+++..-......++.++..++.++..+++.+..++..+..++.+++.+..+|..+.+.|
T Consensus       197 k~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  197 KQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766653333333444444444444444444444444444444444444444444444444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.26  E-value=0.34  Score=50.78  Aligned_cols=90  Identities=26%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             hhhhhHHHHHhhhhhHHHHhhhhHHHH-HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185          257 GTHQLQGQLKLAQDDVTTLNAKLDYER-MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL  335 (533)
Q Consensus       257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~-~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL  335 (533)
                      .++.|+..|..++.+-+.+.++|+.+. ..|.+|+-.|..|.+.                         +..++.++..|
T Consensus       107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e-------------------------~~~~q~~le~L  161 (310)
T PF09755_consen  107 LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE-------------------------KSAKQEELERL  161 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------------HHHhHHHHHHH
Confidence            478888888888888888888888766 5577777777666442                         22334444455


Q ss_pred             HHHHHHHHHHHH-HHHhhhhhHHHHHHHhHHHHhhhh
Q 037185          336 LEKQALLDARLK-EWELQGKALEDKIRQCETEKMEIT  371 (533)
Q Consensus       336 ~E~~~~Le~kL~-e~e~~~~~lEdeirqleaEK~E~~  371 (533)
                      ..+...|+..|+ +-|.=++-|--++-+++++|.-++
T Consensus       162 r~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq  198 (310)
T PF09755_consen  162 RREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQ  198 (310)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555 223333444444555555555443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.24  E-value=0.34  Score=52.63  Aligned_cols=53  Identities=23%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185          263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS  315 (533)
Q Consensus       263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls  315 (533)
                      .+|+..+.+++..++++.....+-.+|+..|+.+++.+...+++|.+....+.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~   90 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK   90 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45566666677777777777777788888888888877777777776555444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.24  E-value=0.0031  Score=70.84  Aligned_cols=45  Identities=27%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhh
Q 037185          464 SSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYR  512 (533)
Q Consensus       464 ~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr  512 (533)
                      ...+.+.+|+.+|..+++...|-+.+-..    |-.-+|..||+|=-|+
T Consensus       603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~----ks~eFr~av~~llGyk  647 (722)
T PF05557_consen  603 SQEKEIAELKAELASAEKRNQRLKEVFKA----KSQEFREAVYSLLGYK  647 (722)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcce
Confidence            34556788999999999988888887755    4455777788876554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.15  E-value=0.7  Score=52.32  Aligned_cols=65  Identities=17%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------------hhhHHHHHHHHHHhhHHhh
Q 037185          257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------------DRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------------~~d~EIr~LK~~lsDAeeK  320 (533)
                      ....+|.........+.+++..-+..+..|.+|...|..|+.++.                .+..+++.|+..+.+...+
T Consensus        23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q  102 (617)
T PF15070_consen   23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ  102 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444555555555555555666777777777666555                4556666676666655554


Q ss_pred             h
Q 037185          321 F  321 (533)
Q Consensus       321 ~  321 (533)
                      +
T Consensus       103 l  103 (617)
T PF15070_consen  103 L  103 (617)
T ss_pred             H
Confidence            3

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.15  E-value=0.85  Score=53.22  Aligned_cols=82  Identities=27%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHH
Q 037185          211 RDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQ  290 (533)
Q Consensus       211 ~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLq  290 (533)
                      ||...-++++-.-+.||..||+..-+||          .+..++|+.|.-+|.+|..+.-++...++++..+..+.+---
T Consensus        92 rdv~llEddlk~~~sQiriLQn~c~~lE----------~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~  161 (1265)
T KOG0976|consen   92 RDVNLLEDDLKHHESQIRILQNKCLRLE----------MEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA  161 (1265)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence            3444555666666888888887777777          557888999999999999888888888888776665544333


Q ss_pred             HHHHHHhhchhh
Q 037185          291 ERIAKVETNLSD  302 (533)
Q Consensus       291 eri~~lkt~Ls~  302 (533)
                      .-|-+.-..|-+
T Consensus       162 ~eIf~~~~~L~n  173 (1265)
T KOG0976|consen  162 HDIFMIGEDLHD  173 (1265)
T ss_pred             HHHHHHHHHHhh
Confidence            333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.10  E-value=0.68  Score=51.25  Aligned_cols=195  Identities=19%  Similarity=0.265  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhH-HhhhchhHhhhhHHHHHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhh
Q 037185          307 VAELKIALSDA-EEKFTLDKAQLQSEMFCLLEKQALLDA-----RLKEWELQGKALEDKIRQCETEKMEITGLHEAQERG  380 (533)
Q Consensus       307 Ir~LK~~lsDA-eeK~s~EKa~l~aEiskL~E~~~~Le~-----kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~  380 (533)
                      +.+|+.-..+. .+.|.++.-.+..+|..|.+.......     .|+..+.....++++|-+++.              .
T Consensus       232 l~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd--------------~  297 (569)
T PRK04778        232 LQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD--------------I  297 (569)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH--------------H
Confidence            34444444333 356777777888888888888877444     445666666777777777776              2


Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH---HHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV---NTLMAEARSRDNHIGQIEEHSRKLHMEHAE  457 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv---~~L~ad~~sRd~~I~qme~hl~qL~~e~~~  457 (533)
                      |..|+..-    ..-.+.+..+-+.+.+++.....|..|.+.|+..-   ++-+..++.-..+|..++..+..+.-....
T Consensus       298 lekE~~A~----~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~  373 (569)
T PRK04778        298 LEREVKAR----KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAE  373 (569)
T ss_pred             HHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            22222211    11222333344444444444444444444444330   111122233334444444444433333333


Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185          458 LIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL  523 (533)
Q Consensus       458 l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~  523 (533)
                      .......+...+.++..++.+++++...-...|......-.+|.    --|++||.-...+.+.+.
T Consensus       374 ~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr----~kL~~~~~~L~~ikr~l~  435 (569)
T PRK04778        374 QEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAR----EKLERYRNKLHEIKRYLE  435 (569)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            33334555555566666666666665555555554443333333    335666665555555554

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.05  E-value=0.31  Score=52.96  Aligned_cols=165  Identities=20%  Similarity=0.236  Sum_probs=90.9

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH----HHHHHhhHHh---------hhc
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE----LKIALSDAEE---------KFT  322 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~----LK~~lsDAee---------K~s  322 (533)
                      .....|+.+|..+..++++....+-.-.....++...|+.+..+|..+..+-++    |-..|..+..         ..+
T Consensus        59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~  138 (420)
T COG4942          59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVS  138 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcC
Confidence            344444445555555555554444333333444444444444444433332222    2222332332         456


Q ss_pred             hhHhhhhHHHHH--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185          323 LDKAQLQSEMFC--------LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE  394 (533)
Q Consensus       323 ~EKa~l~aEisk--------L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~  394 (533)
                      +|-+.-..-+..        +.+.+.+|..-++.       |-+.-..+.+++.+...    ..-+...+...|.--+.+
T Consensus       139 ~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~-------l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E  207 (420)
T COG4942         139 PEDAQRSVRLAIYYGALNPARAERIDALKATLKQ-------LAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEE  207 (420)
T ss_pred             hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            666553333333        34444555555555       55555555555555443    334455566666666678


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185          395 RDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLM  431 (533)
Q Consensus       395 ~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~  431 (533)
                      +.+-...||+++.....+++.|....+.|...|.++-
T Consensus       208 ~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         208 RKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8888888899999998889888888888888876554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.49  Score=54.99  Aligned_cols=94  Identities=23%  Similarity=0.275  Sum_probs=80.4

Q ss_pred             hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185          375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME  454 (533)
Q Consensus       375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e  454 (533)
                      .++.+.++.++.++++++...-..|++.+..++.+..-...++.|+..++-++.+|...+..=+|-|+.+-+.+.-|.+.
T Consensus       805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q  884 (970)
T KOG0946|consen  805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ  884 (970)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence            56788999999999999999999999999999999999999999999999999999999999999998888887777633


Q ss_pred             HHHHHHhhHhHHHHHHHHH
Q 037185          455 HAELIAASESSRKLVDELR  473 (533)
Q Consensus       455 ~~~l~~~~~~~~~~v~eL~  473 (533)
                           +.++++.+.|.+-+
T Consensus       885 -----adse~l~ka~~~~k  898 (970)
T KOG0946|consen  885 -----ADSETLSKALKTVK  898 (970)
T ss_pred             -----hcchHHHHHHHHhh
Confidence                 34555566655544

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.00  E-value=0.9  Score=50.91  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHH----HhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 037185          164 NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELH----SQIESAKRDVNIKEADLEMERRQVFELQNYVRELET  239 (533)
Q Consensus       164 ~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~----k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~  239 (533)
                      |.-...--.||--||.+=+..---|..++....+-...+.    ..++.|.+.+.-+.....-.+.+|..|+-.+++|..
T Consensus        48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~  127 (546)
T KOG0977|consen   48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRK  127 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3344455667777777776666666666555443322222    222244444444434444446666666655555554


Q ss_pred             hhhcc----hHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-------hhhHHHH
Q 037185          240 RLSES----NFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-------DRNNEVA  308 (533)
Q Consensus       240 ~~~~l----~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-------~~d~EIr  308 (533)
                      .....    .--.+.+.-....+.++++++..+.-.+..+.-.+.--++|+..|...|+.++.+|.       ++++.+.
T Consensus       128 ~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q  207 (546)
T KOG0977|consen  128 KLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQ  207 (546)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            32111    111122222233455555555555554444444444455788888888888888776       7888888


Q ss_pred             HHHHHHhhHHhhhchh
Q 037185          309 ELKIALSDAEEKFTLD  324 (533)
Q Consensus       309 ~LK~~lsDAeeK~s~E  324 (533)
                      .|.+.|.-...-|..|
T Consensus       208 ~Lleel~f~~~~h~~e  223 (546)
T KOG0977|consen  208 TLLEELAFLKRIHKQE  223 (546)
T ss_pred             HHHHHHHHHHhccHHH
Confidence            8888888766555443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.95  E-value=1.6  Score=53.06  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh
Q 037185          419 EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVIL-----DA  493 (533)
Q Consensus       419 EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~-----e~  493 (533)
                      ++-.+.+++.-+-.+...=|.+|.+++  .....-+++.|-...+.+..--..+....++++..|.+=+..+.     +.
T Consensus      1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~ 1086 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDA 1086 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccH
Confidence            333444444444444444455555444  22223444555555555555666777888899999988888877     55


Q ss_pred             hhHHHHHHHHH---hhhhHhhhhhHHHHHHHHc
Q 037185          494 AEEKREAIRQL---CFSLEHYRSGYQELRQAFL  523 (533)
Q Consensus       494 aEeKREAIRQL---Cfslehyr~~y~~L~~~~~  523 (533)
                      ++.=|.|+=++   -|+.+|.---|+-|.+++.
T Consensus      1087 ~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim 1119 (1294)
T KOG0962|consen 1087 EKNYRKALIELKTTELSNKDLDKYYKALDKAIM 1119 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666665332   3333333333445555543

>PF13514 AAA_27: AAA domain

Probab=96.93  E-value=1.5  Score=52.23  Aligned_cols=40  Identities=35%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhH---HHHHHHHHhhhhHhhhhhHH
Q 037185          477 KELENEVDRQRMVILDAAEE---KREAIRQLCFSLEHYRSGYQ  516 (533)
Q Consensus       477 ~eLE~Eve~Q~~~i~e~aEe---KREAIRQLCfslehyr~~y~  516 (533)
                      .++..+.+..+..|.+.+++   -+-|..=|.-+++.||..|+
T Consensus       936 a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~  978 (1111)
T PF13514_consen  936 AELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQ  978 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444445555544443   44566677888999999885

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.93  E-value=0.46  Score=46.48  Aligned_cols=29  Identities=28%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          171 LGRVIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       171 ~~RiielEdELreaneKL~~sEEe~~rlk  199 (533)
                      ..+|.+|..+|.++..+|+.+.-+|--|+
T Consensus        11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk   39 (194)
T PF15619_consen   11 LHKIKELQNELAELQRKLQELRKENKTLK   39 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999888887775

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.43  Score=55.35  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=17.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 037185          386 NQLKVEVCERDNRIEALNKIMDSLKLKYDM  415 (533)
Q Consensus       386 e~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~  415 (533)
                      ..|..|...+-.+|..+|-.+..||..+..
T Consensus       552 delskE~esk~~eidi~n~qlkelk~~~~~  581 (1118)
T KOG1029|consen  552 DELSKETESKLNEIDIFNNQLKELKEDVNS  581 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333444445566777777777777665543

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.90  E-value=0.13  Score=48.35  Aligned_cols=84  Identities=23%  Similarity=0.348  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHh
Q 037185          340 ALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAE  419 (533)
Q Consensus       340 ~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~E  419 (533)
                      -+...+|++...+.-++++.+.-++++..-.+.    ....+.-+.+--+.++...+..|+.|...+..|...++.+++|
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~----~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE   81 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQE----NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE   81 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666666665443332    3333444445555555555666666666777777777777777


Q ss_pred             HHHHHHHH
Q 037185          420 KDEINAKV  427 (533)
Q Consensus       420 K~~l~~kv  427 (533)
                      |..|...+
T Consensus        82 k~~L~k~l   89 (140)
T PF10473_consen   82 KENLDKEL   89 (140)
T ss_pred             HHHHHHHH
Confidence            76665554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.89  E-value=0.93  Score=49.66  Aligned_cols=117  Identities=18%  Similarity=0.208  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185          280 DYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDK  359 (533)
Q Consensus       280 e~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEde  359 (533)
                      .+.+.|++-|+-|.-+|+.++-+  .+.+.        ++- ..|-...+-||....+..++|+...         ++..
T Consensus       246 SrlkqEnlqLvhR~h~LEEq~re--qElra--------eE~-l~Ee~rrhrEil~k~eReasle~En---------lqmr  305 (502)
T KOG0982|consen  246 SRLKQENLQLVHRYHMLEEQRRE--QELRA--------EES-LSEEERRHREILIKKEREASLEKEN---------LQMR  305 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--hhhhH--------HHH-HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence            44567788888888887765432  22222        111 2345567788888888777776443         5567


Q ss_pred             HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          360 IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       360 irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      ++|++.++-           +|...|-+||.-.+.....-..+..-|+.++..+-..+..+-..+..+
T Consensus       306 ~qqleeent-----------elRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L  362 (502)
T KOG0982|consen  306 DQQLEEENT-----------ELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL  362 (502)
T ss_pred             HHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777555           466677777776666666666666667777777766666654444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.87  E-value=0.52  Score=46.13  Aligned_cols=169  Identities=23%  Similarity=0.319  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhchhhhhHHHHHHHHHH---hhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 037185          288 KFQERIAKVETNLSDRNNEVAELKIAL---SDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE  364 (533)
Q Consensus       288 kLqeri~~lkt~Ls~~d~EIr~LK~~l---sDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqle  364 (533)
                      .|+..|+.+.-.+.++.+|.+-|++.-   ..|-.+|----+.|.-=|....+++-.|..+|+.....++.++.+++...
T Consensus        16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~   95 (194)
T PF15619_consen   16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD   95 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444443322   23445555555555556667777777777788776666677777777666


Q ss_pred             HHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 037185          365 TEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQI  444 (533)
Q Consensus       365 aEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm  444 (533)
                      ++.-.           ++.++..|+.                  |-..- .| .|.+.+..+|+.+-+.+-.-|.+|+.|
T Consensus        96 ~el~k-----------~~~~l~~L~~------------------L~~dk-nL-~eReeL~~kL~~~~~~l~~~~~ki~~L  144 (194)
T PF15619_consen   96 EELLK-----------TKDELKHLKK------------------LSEDK-NL-AEREELQRKLSQLEQKLQEKEKKIQEL  144 (194)
T ss_pred             HHHHH-----------HHHHHHHHHH------------------HHHcC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            62221           1111111111                  00000 11 134556666666666778888899888


Q ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185          445 EEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVI  490 (533)
Q Consensus       445 e~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i  490 (533)
                      +.++.-..   -........-.+.+.++...+..|..||..-+..|
T Consensus       145 ek~leL~~---k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  145 EKQLELEN---KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88654432   22222333334555666666666666666554444

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.86  E-value=0.00026  Score=79.23  Aligned_cols=83  Identities=18%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhHHhHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH------------HHHhhHhHHHHHH
Q 037185          404 KIMDSLKLKYDMLMAEKDEI-NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAE------------LIAASESSRKLVD  470 (533)
Q Consensus       404 k~id~Lk~k~e~L~~EK~~l-~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~------------l~~~~~~~~~~v~  470 (533)
                      ..+..++..++.+..+...- ..+|..|-..+..++..|.+|+..+... ++.|+            -+++...+++.+.
T Consensus       554 ~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~-lekak~vi~~Ld~k~~~~~~e~~~L~~ql~  632 (713)
T PF05622_consen  554 DELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKY-LEKAKEVIKTLDPKQNPSSPEIQALKKQLQ  632 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH-HHHHHHHhhccChhccCChHHHHHHHHHHH
Confidence            33333344455544444433 7788888888889998888888644321 22221            3456667788888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 037185          471 ELRFRVKELENEVDRQR  487 (533)
Q Consensus       471 eL~~rv~eLE~Eve~Q~  487 (533)
                      +-..++..||.+.+.-+
T Consensus       633 e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  633 EKDRRIESLEKELEKSK  649 (713)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            88899999998885443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.86  E-value=1.4  Score=50.86  Aligned_cols=184  Identities=21%  Similarity=0.174  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh---hhhhhhh----------hhHHhHHHHHHHHHHHHH-
Q 037185          167 YEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE---SAKRDVN----------IKEADLEMERRQVFELQN-  232 (533)
Q Consensus       167 ~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~---~a~~dl~----------i~k~kLe~ee~ei~~LQ~-  232 (533)
                      .++++|||..+|-..+.+----+++--++..+|.+|.-.++   +|-.|--          .-|.-|.. ...|.+|.+ 
T Consensus       404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~iIkKLRAk  482 (961)
T KOG4673|consen  404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SAIIKKLRAK  482 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            46899999999988866554455555555555555443332   2222210          11111111 122222221 


Q ss_pred             -------------HHHHHHHhhh----cchHHHHHHHH-HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 037185          233 -------------YVRELETRLS----ESNFEIERLMK-ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIA  294 (533)
Q Consensus       233 -------------~v~ELE~~~~----~l~~s~~ei~k-l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~  294 (533)
                                   +|..|+-...    .|+.. +++.| ++|.|+.++++++...++.+-.+...+.--....-+|.+..
T Consensus       483 ~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K-ee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d  561 (961)
T KOG4673|consen  483 IKEAETLEEKKGELITKLQSEENKLKSILRDK-EETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATND  561 (961)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence                         2222222222    22222 34444 45678888888877777666555554443334444444444


Q ss_pred             HHhhchh---------------hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185          295 KVETNLS---------------DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDK  359 (533)
Q Consensus       295 ~lkt~Ls---------------~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEde  359 (533)
                      -++.+|.               .+=-.|.+|+++|+-+++..-.=-.       -+-+++..|..+|..-|.+|..+-.+
T Consensus       562 ~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd-------~~R~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  562 EARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED-------MFRGEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             hhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444331               2222345555555555544322222       24455566666666666666555443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.85  E-value=1.7  Score=51.79  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             hHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Q 037185          416 LMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA-  494 (533)
Q Consensus       416 L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a-  494 (533)
                      +..+-..+.+.|.+|..-+..|+-.+..+..-.+.|--++-..........+...+|...+.-||+|..---..|.-.- 
T Consensus       479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  479 LEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555555555544444444444444444455555666666666666666432222222222 


Q ss_pred             -hHHHHHHHHHhhhhHhhhhh
Q 037185          495 -EEKREAIRQLCFSLEHYRSG  514 (533)
Q Consensus       495 -EeKREAIRQLCfslehyr~~  514 (533)
                       .+|+.+.-|--=.+|-|-.-
T Consensus       559 t~qn~~~LEq~~n~lE~~~~e  579 (1195)
T KOG4643|consen  559 TSQNGALLEQNNNDLELIHNE  579 (1195)
T ss_pred             HhHHHHHHHHhhhHHHHHHHH
Confidence             35666555555555544433

>PRK09039 hypothetical protein; Validated

Probab=96.82  E-value=0.084  Score=55.20  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=33.4

Q ss_pred             hhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185          258 THQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS  315 (533)
Q Consensus       258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls  315 (533)
                      +..+..+|..++..|+.+=.-|.-+......|+.+|+.+.++++....+-..|+..+.
T Consensus        48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~  105 (343)
T PRK09039         48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA  105 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444445555666666677777777777777765555555555443

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.77  E-value=1.6  Score=50.20  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             hhhhHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhH------HHHHHHHHHHHHHHHHhhHh
Q 037185          394 ERDNRIEALNKIMDSLKLK---YDMLMAEKDEINAKVNTLMAEARSRDNHIGQI------EEHSRKLHMEHAELIAASES  464 (533)
Q Consensus       394 ~~~~~Ie~LNk~id~Lk~k---~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qm------e~hl~qL~~e~~~l~~~~~~  464 (533)
                      ++..-+..|.-.+..|..+   ++.|.+=+-.+.-....|++..++|..-+..|      +.|.+++.-+...-    .+
T Consensus       272 e~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~----~~  347 (716)
T KOG4593|consen  272 ENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRN----AN  347 (716)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHH----hh
Confidence            3333444444444444443   44555556666777778888888888777665      45555555444221    12


Q ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 037185          465 SRKLVD------ELRFRVKELENEVDRQRMVILDAAEEKRE  499 (533)
Q Consensus       465 ~~~~v~------eL~~rv~eLE~Eve~Q~~~i~e~aEeKRE  499 (533)
                      ++..++      .+..++..+=+++.++=..|.+.+--+|+
T Consensus       348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~  388 (716)
T KOG4593|consen  348 LKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKE  388 (716)
T ss_pred             hccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            222222      23466777777788877777777766653

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.74  E-value=0.15  Score=53.08  Aligned_cols=114  Identities=22%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHH
Q 037185          307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEIN  386 (533)
Q Consensus       307 Ir~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie  386 (533)
                      +..|+..|-..-+-+--++..|...+..+.+-.-.|..+...       |..++.++..-+.+++..-......++.++.
T Consensus       142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~-------L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~  214 (312)
T smart00787      142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDA-------LEEELRQLKQLEDELEDCDPTELDRAKEKLK  214 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHhCCHHHHHHHHHHHH
Confidence            333444444444444445556666666666666677777766       7777777777666655433333344555555


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      .+..++....+.|+.++..+..++.+++.....|..+...|
T Consensus       215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.70  E-value=2.2  Score=50.94  Aligned_cols=125  Identities=19%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185          388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK  467 (533)
Q Consensus       388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~  467 (533)
                      |+.+....+..|..+-|....+.....+|+.|++.+-..+.|.-. .-+|.   ...-+|+.|+-.-+-.+.+..     
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~-s~~rq---~~e~e~~~q~ls~~~Q~~~et-----  483 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR-SLSRQ---SLENEELDQLLSLQDQLEAET-----  483 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHH---HHHhHHHHHHHHHHHHHHHHH-----
Confidence            344444555566666666666666777899999888888866532 22333   344556666554444444444     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhh---hhhHHHHHHHHc
Q 037185          468 LVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHY---RSGYQELRQAFL  523 (533)
Q Consensus       468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehy---r~~y~~L~~~~~  523 (533)
                        .+|+.+++.|=+-...-...++-.+..|-+--+|+==-..||   -+.+..|++.+.
T Consensus       484 --~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~  540 (1195)
T KOG4643|consen  484 --EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLG  540 (1195)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              455555555555555555666666666655555553333333   455666665553

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.70  E-value=0.16  Score=47.29  Aligned_cols=94  Identities=19%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHH---HHHHHHHHHHHHhhch
Q 037185          224 RRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERM---QVLKFQERIAKVETNL  300 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~---ev~kLqeri~~lkt~L  300 (533)
                      ...+..+..++++|++....+.   .+|..|+.++..|..+|+.++..+...+.+++.--.   .+--|+.||..|+..|
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E---~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel   89 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKE---QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL   89 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence            4455556666777776654443   677888888888888888888888888888754432   2334666666666666


Q ss_pred             hhhhHHHHHHHHHHhhHHhh
Q 037185          301 SDRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       301 s~~d~EIr~LK~~lsDAeeK  320 (533)
                      ...+..++..-..|-++..+
T Consensus        90 e~ae~~L~e~~ekl~e~d~~  109 (143)
T PF12718_consen   90 EEAEKKLKETTEKLREADVK  109 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666665555555544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.69  E-value=0.16  Score=51.38  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHH
Q 037185          263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL  342 (533)
Q Consensus       263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~L  342 (533)
                      .++..++.++.+|+.+.++-..+++.|.+++..+...+.++...+..++..+.++...+..+=+-+.-++-.+..+.++|
T Consensus        89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L  168 (239)
T COG1579          89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL  168 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666677676666677777777777777776666666666666666666665554444444444444444444


Q ss_pred             HHHH
Q 037185          343 DARL  346 (533)
Q Consensus       343 e~kL  346 (533)
                      -++|
T Consensus       169 ~~~l  172 (239)
T COG1579         169 KEKL  172 (239)
T ss_pred             HHhc
Confidence            4443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.66  E-value=2.3  Score=50.84  Aligned_cols=240  Identities=19%  Similarity=0.239  Sum_probs=147.9

Q ss_pred             HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh--hhchhHhhhh
Q 037185          252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE--KFTLDKAQLQ  329 (533)
Q Consensus       252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee--K~s~EKa~l~  329 (533)
                      ......|..+-.+|...+.++..+..+.+..-+++.....-+..+-.++...|..|++....|++--+  +|-.+-+.++
T Consensus       223 fhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k  302 (1141)
T KOG0018|consen  223 FHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLK  302 (1141)
T ss_pred             hhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccch
Confidence            34445666666777777777777777777777777777666666666788888888888888877111  2223333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhh------------hhhhHHHHHHHHHhhh-h
Q 037185          330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQER------------GMQSEINQLKVEVCER-D  396 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~------------~L~gEie~Lk~El~~~-~  396 (533)
                      +.+....-.+...+...........-++.++.-++..+.+.+.  +.+.+            ....+-++|+++-+.. .
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fek--ei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~  380 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEK--EIEERSQERGSELNLKDDQVEEYERLKEEACKEAL  380 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhH
Confidence            4444444444444444444334444455555555544443332  11111            1112233444433221 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 037185          397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRV  476 (533)
Q Consensus       397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv  476 (533)
                      ..++.||.++-.-+..++.+.+=...+.+++..|...+..=+..+..|..++..+.-.+.++-..-+.+...|..++.+.
T Consensus       381 ~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~  460 (1141)
T KOG0018|consen  381 EELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP  460 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence            45677777776666667766666777888888888888777777778888888888888788777777777788777777


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 037185          477 KELENEVDRQRMVILDA  493 (533)
Q Consensus       477 ~eLE~Eve~Q~~~i~e~  493 (533)
                      .++-.+...-+..|++.
T Consensus       461 ~e~n~eL~~~~~ql~da  477 (1141)
T KOG0018|consen  461 YELNEELVEVLDQLLDA  477 (1141)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            77777766666666554

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.65  E-value=0.2  Score=47.04  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=90.5

Q ss_pred             HHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185          349 WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVN  428 (533)
Q Consensus       349 ~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~  428 (533)
                      |+....-++++++....++.                         ..+.+|+.|-.++.........+       ....-
T Consensus         1 de~K~l~v~~kLK~~~~e~d-------------------------sle~~v~~LEreLe~~q~~~e~~-------~~daE   48 (140)
T PF10473_consen    1 DEEKFLHVEEKLKESESEKD-------------------------SLEDHVESLERELEMSQENKECL-------ILDAE   48 (140)
T ss_pred             CcHHHHHHHHHHHHHHHhHh-------------------------hHHHHHHHHHHHHHHHHHhHHHH-------HHHHH
Confidence            44444556677776666554                         33446666554444444443333       33334


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 037185          429 TLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSL  508 (533)
Q Consensus       429 ~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfsl  508 (533)
                      |-.+.+.+-..+|..|-..+++|+++-+-+.++-+++.+.+.....||++||.-+.--...|.....+|+...--+-|++
T Consensus        49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~v  128 (140)
T PF10473_consen   49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAV  128 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555666778888899999999999999999999999999999999999988888888888777777665555555


Q ss_pred             Hhh
Q 037185          509 EHY  511 (533)
Q Consensus       509 ehy  511 (533)
                      +-.
T Consensus       129 e~L  131 (140)
T PF10473_consen  129 EML  131 (140)
T ss_pred             HHH
Confidence            543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=1.9  Score=49.64  Aligned_cols=166  Identities=22%  Similarity=0.264  Sum_probs=118.3

Q ss_pred             HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          348 EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       348 e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      .+..+...|....+...+--.||.-...|++. +|..|.+|-.++.++...=-.|-.+-+....++..|+.|++.++..|
T Consensus       434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed-~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i  512 (698)
T KOG0978|consen  434 QVEELSEELQKKEKNFKCLLSEMETIGSAFED-MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI  512 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555555555 88888999999988877666666677777888999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--
Q 037185          428 NTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLC--  505 (533)
Q Consensus       428 ~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLC--  505 (533)
                      .+|.+-++.=--.|+.+++.++-|.-....++.+.......++.++..+-++.+.++--+.. ++..+.+-+=|...|  
T Consensus       513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~-~ek~~~~le~i~~~~~e  591 (698)
T KOG0978|consen  513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE-LEKSEAKLEQIQEQYAE  591 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888888777777777777777777666544333 233444444444433  


Q ss_pred             --hhhHhhhhhH
Q 037185          506 --FSLEHYRSGY  515 (533)
Q Consensus       506 --fslehyr~~y  515 (533)
                        -.|++.+-..
T Consensus       592 ~~~ele~~~~k~  603 (698)
T KOG0978|consen  592 LELELEIEKFKR  603 (698)
T ss_pred             HHHHHHHHHHHH
Confidence              3445554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.62  E-value=1.8  Score=48.86  Aligned_cols=51  Identities=8%  Similarity=0.133  Sum_probs=26.1

Q ss_pred             hHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185          261 LQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS  315 (533)
Q Consensus       261 LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls  315 (533)
                      +-.+++..++....+..+++    ++-+.+.++.-++..-+.+++-|++++..|+
T Consensus       233 i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~  283 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVS  283 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33344444444444555553    4444555555555555555555555555555

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.56  E-value=2.4  Score=49.72  Aligned_cols=95  Identities=17%  Similarity=0.285  Sum_probs=52.5

Q ss_pred             HhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH---HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185          418 AEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHM---EHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAA  494 (533)
Q Consensus       418 ~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~---e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~a  494 (533)
                      .=|.++...+.+|+.....|+++|..+-.|+-.|.+   -|-..--+...|..-++-|..-..-++...+-= .++-+.|
T Consensus       372 e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f-k~Lke~a  450 (1265)
T KOG0976|consen  372 EKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF-KVLKEHA  450 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH-HHHHHhh
Confidence            345566777778888888888888887777765542   231111122222233333444444444444332 2456788


Q ss_pred             hHHHH-HHHHHhhhhHhhhh
Q 037185          495 EEKRE-AIRQLCFSLEHYRS  513 (533)
Q Consensus       495 EeKRE-AIRQLCfslehyr~  513 (533)
                      |+||+ ||-|--=-++..|.
T Consensus       451 egsrrraIeQcnemv~rir~  470 (1265)
T KOG0976|consen  451 EGSRRRAIEQCNEMVDRIRA  470 (1265)
T ss_pred             hhhHhhHHHHHHHHHHHHHH
Confidence            88876 67664444444443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.55  E-value=0.23  Score=45.16  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHH
Q 037185          252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSE  331 (533)
Q Consensus       252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aE  331 (533)
                      ......+..++..|+...+.+.....+.+.|+.--+..-..|..+++.+.....+|..|+.....|...+.--+.+...+
T Consensus        20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q   99 (132)
T PF07926_consen   20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ   99 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34446677777777777787888888999888887778888999999999999999999998888877765555554444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 037185          332 MFCLLEKQALLDARLKE  348 (533)
Q Consensus       332 iskL~E~~~~Le~kL~e  348 (533)
                      =..|..++..+..++.+
T Consensus       100 k~~le~e~~~~~~r~~d  116 (132)
T PF07926_consen  100 KEQLEKELSELEQRIED  116 (132)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.47  E-value=2.1  Score=48.02  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH----HHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETNLSDRNNEVAE  309 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~----~ev~kLqeri~~lkt~Ls~~d~EIr~  309 (533)
                      .++..+...+..++.+++.++..+..++.+|...-    .+...|..+++.++..+..+.+.+++
T Consensus       223 ~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~  287 (650)
T TIGR03185       223 EKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE  287 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445666666666666666666666554432    22234555555555555555555554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.41  E-value=2.8  Score=48.80  Aligned_cols=35  Identities=29%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC  363 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql  363 (533)
                      ..++.++.+....+..++..|+.....+++.+..+
T Consensus       585 ~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         585 KEELEELRERLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35555566666666666666555555555555555

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=2  Score=50.21  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhhhhHHHHHhhhhhH---HHHhhhhHHHH-----------------HHHHHHHHHHHHHhhchhhhhHHH
Q 037185          248 IERLMKELEGTHQLQGQLKLAQDDV---TTLNAKLDYER-----------------MQVLKFQERIAKVETNLSDRNNEV  307 (533)
Q Consensus       248 ~~ei~kl~E~ik~LQ~~Le~~q~e~---a~~k~Kle~e~-----------------~ev~kLqeri~~lkt~Ls~~d~EI  307 (533)
                      .+++..+...++.|-+..+.++++.   .+|...+.+..                 .+|..|--..+..++.+.+.+.++
T Consensus       736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~  815 (970)
T KOG0946|consen  736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL  815 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3555555556666665555555544   33332222222                 344444333566666777777777


Q ss_pred             HHHHHHHhhHHhhhc---hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          308 AELKIALSDAEEKFT---LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       308 r~LK~~lsDAeeK~s---~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      ..+|+.....-++++   ..+..+..-=.-+..+..+.+.+|-.+-.+.+..-+.++.+++
T Consensus       816 ~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltE  876 (970)
T KOG0946|consen  816 TQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTE  876 (970)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence            777777665555433   2222232223335555666666666654444445555544443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.21  E-value=3  Score=47.17  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             HHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185          489 VILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL  523 (533)
Q Consensus       489 ~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~  523 (533)
                      .|.--|- |=++.|+.-=.|--.+++|..|-+.+.
T Consensus       538 lifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~  571 (594)
T PF05667_consen  538 LIFRDAK-KDEAARKAYKLLASLHENCSQLIETVE  571 (594)
T ss_pred             HHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3443343 555666655556677778887777665

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.14  E-value=1.5  Score=46.00  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 037185          398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVK  477 (533)
Q Consensus       398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~  477 (533)
                      ++...|..|+.|...+..-+.|-..-...|..|++.+.+...+.       .++-.|+.+|......++..-..|.+.+.
T Consensus       207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~-------k~~~~EnEeL~q~L~~ske~Q~~L~aEL~  279 (306)
T PF04849_consen  207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC-------KQLAAENEELQQHLQASKESQRQLQAELQ  279 (306)
T ss_pred             HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666677777777666554444       55666666666666666666666666666


Q ss_pred             HHHHHH
Q 037185          478 ELENEV  483 (533)
Q Consensus       478 eLE~Ev  483 (533)
                      +|...-
T Consensus       280 elqdkY  285 (306)
T PF04849_consen  280 ELQDKY  285 (306)
T ss_pred             HHHHHH
Confidence            665544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.11  E-value=1.4  Score=46.41  Aligned_cols=178  Identities=22%  Similarity=0.273  Sum_probs=103.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhh----------hhhhHHhH-HHHHHHHHHHHHHHHHH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRD----------VNIKEADL-EMERRQVFELQNYVREL  237 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~d----------l~i~k~kL-e~ee~ei~~LQ~~v~EL  237 (533)
                      .|..++..+|..|..+++.+.-+.-++. +|.+|-+....+..|          ++-..... -..-..+..||..++.|
T Consensus        94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~L  172 (306)
T PF04849_consen   94 DLSERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSL  172 (306)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHH
Confidence            6777778888888877777766655543 456665443211111          00000000 00012334455555555


Q ss_pred             HHhhhcchHHHHHHHH--------HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185          238 ETRLSESNFEIERLMK--------ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE  309 (533)
Q Consensus       238 E~~~~~l~~s~~ei~k--------l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~  309 (533)
                      |..-..|+-....+..        .+--+.++=.+|-.|...|+.+-.=|.....+....|+-|+.|-+++.++++.++.
T Consensus       173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~  252 (306)
T PF04849_consen  173 EEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ  252 (306)
T ss_pred             HHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444444433333221        12236666677777888788777777777777888888888888888887777766


Q ss_pred             HHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          310 LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       310 LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      +           ..|+..|..-+.-..+.+..|...|.+       +.++-..|.+
T Consensus       253 ~-----------~~EnEeL~q~L~~ske~Q~~L~aEL~e-------lqdkY~E~~~  290 (306)
T PF04849_consen  253 L-----------AAENEELQQHLQASKESQRQLQAELQE-------LQDKYAECMA  290 (306)
T ss_pred             H-----------hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            3           445556666666666777777777777       5555555544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK09039 hypothetical protein; Validated

Probab=96.10  E-value=0.41  Score=50.15  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAK  426 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k  426 (533)
                      |..+...++....+.-..|..||+.|+.|+..+..|..+.+.++..
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555566666666655554444444444333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.05  E-value=1.8  Score=43.16  Aligned_cols=84  Identities=25%  Similarity=0.373  Sum_probs=56.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM  406 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i  406 (533)
                      .+.+.+-.|.-....+..++..++...+.+-+++++.++ +++                      -+  +..|..|.+.+
T Consensus       120 ~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~-rAE----------------------~a--ERsVakLeke~  174 (205)
T KOG1003|consen  120 ILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET-RAE----------------------FA--ERRVAKLEKER  174 (205)
T ss_pred             HhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-hHH----------------------HH--HHHHHHHcccH
Confidence            556667777777888888888988888889888888776 221                      11  24677777777


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185          407 DSLKLKYDMLMAEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       407 d~Lk~k~e~L~~EK~~l~~kv~~L~ad~~  435 (533)
                      |+|..++.....+--.+...++...++++
T Consensus       175 DdlE~kl~~~k~ky~~~~~eLD~~~~~L~  203 (205)
T KOG1003|consen  175 DDLEEKLEEAKEKYEEAKKELDETLQELE  203 (205)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777776666655555555544444443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=96.03  E-value=2.9  Score=45.30  Aligned_cols=105  Identities=17%  Similarity=0.288  Sum_probs=65.4

Q ss_pred             HHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 037185          174 VIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMK  253 (533)
Q Consensus       174 iielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~k  253 (533)
                      +..+-+||++.++....+++++.+||.+++..       +..-...|+.++-+...|-.||.++-               
T Consensus       214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e-------~~~~~~~LqEEr~R~erLEeqlNd~~---------------  271 (395)
T PF10267_consen  214 LQKILEELREIKESQSRLEESIEKLKEQYQRE-------YQFILEALQEERYRYERLEEQLNDLT---------------  271 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHH---------------
Confidence            44455688888899999999999998877654       34444455555544444543343333               


Q ss_pred             HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 037185          254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK  311 (533)
Q Consensus       254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK  311 (533)
                           .--|+++.+++.+++....|.++.-.      ||+..+...++.-+.+|.+|+
T Consensus       272 -----elHq~Ei~~LKqeLa~~EEK~~Yqs~------eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  272 -----ELHQNEIYNLKQELASMEEKMAYQSY------ERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             -----HHHHHHHHHHHHHHHhHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHH
Confidence                 22366777777777777778777664      344444444455555566655

Its function is unknown.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.03  E-value=0.58  Score=43.62  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC  363 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql  363 (533)
                      .+|..|+-++..++.+|...+..+.+++..+..+...        .+..-.|...+..|+..|...+....-.-.+++++
T Consensus        35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~--------~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~  106 (143)
T PF12718_consen   35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR--------KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA  106 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555444332        22222556666666666666433333355555544


Q ss_pred             HH
Q 037185          364 ET  365 (533)
Q Consensus       364 ea  365 (533)
                      ..
T Consensus       107 d~  108 (143)
T PF12718_consen  107 DV  108 (143)
T ss_pred             HH
Confidence            43

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.00  E-value=2.4  Score=43.97  Aligned_cols=76  Identities=21%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037185          334 CLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKY  413 (533)
Q Consensus       334 kL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~  413 (533)
                      ++.-..+.|++|-.=|+=+.+.++.=+.                  .|....+-|+.+.....+.++.++..+..+..++
T Consensus       125 ~~vK~~aRl~aK~~WYeWR~~ll~gl~~------------------~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~  186 (325)
T PF08317_consen  125 QLVKTYARLEAKKMWYEWRMQLLEGLKE------------------GLEENLELLQEDYAKLDKQLEQLDELLPKLRERK  186 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555566665544444444443333                  3444455566666667777777877777777777


Q ss_pred             HHhHHhHHHHHHHH
Q 037185          414 DMLMAEKDEINAKV  427 (533)
Q Consensus       414 e~L~~EK~~l~~kv  427 (533)
                      ..|+.|...+.+.+
T Consensus       187 ~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  187 AELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776666654

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.98  E-value=2  Score=47.44  Aligned_cols=188  Identities=15%  Similarity=0.051  Sum_probs=98.0

Q ss_pred             HhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh-------hhhhhhhhhHHhHHHHHHHHHHHHHHH-------------
Q 037185          175 IQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE-------SAKRDVNIKEADLEMERRQVFELQNYV-------------  234 (533)
Q Consensus       175 ielEdELreaneKL~~sEEe~~rlk~el~k~~~-------~a~~dl~i~k~kLe~ee~ei~~LQ~~v-------------  234 (533)
                      ..+-++|+.|.+++.+..|...---....+...       .-..-+.+.+-+|-.+.++|.++|.++             
T Consensus       209 ~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~  288 (554)
T KOG4677|consen  209 RSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELA  288 (554)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            556688888888888877765433211111111       111123445555555566666665333             


Q ss_pred             --------------------HHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 037185          235 --------------------RELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIA  294 (533)
Q Consensus       235 --------------------~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~  294 (533)
                                          +|+|..-..+.++.+++..++..+..|..++......+--+...+   ..+.-.+.++++
T Consensus       289 ~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~---~~q~~~~h~~ka  365 (554)
T KOG4677|consen  289 LSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAG---QTQIFRKHPRKA  365 (554)
T ss_pred             HHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---HHHHHHhhhHhh
Confidence                                455555566666666666666665555555543332222222221   233344455555


Q ss_pred             HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHhHH
Q 037185          295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK--EWELQGKALEDKIRQCET  365 (533)
Q Consensus       295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~--e~e~~~~~lEdeirqlea  365 (533)
                      -.++....+.-.+.-+++.-.--.+-..+-+.+.++-|..=..+.+.|-.+|+  -|......+++-.-||..
T Consensus       366 ~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~  438 (554)
T KOG4677|consen  366 SILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTY  438 (554)
T ss_pred             hhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHH
Confidence            55554455555555555555444455555556666666666666666666554  444444444444444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.97  E-value=4.6  Score=47.13  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             ccchhHHHhHHHHHHHHHHHHHHhh
Q 037185            4 SSSRWLAENLEEMDRSVKQMQKLIE   28 (533)
Q Consensus         4 ~~skWl~~nL~~me~~vk~mlklie   28 (533)
                      +.+-+|..-|..||+-.|.+-..+.
T Consensus       258 ~~~~~l~~~l~~~eeEnk~Lke~l~  282 (769)
T PF05911_consen  258 KESEFLTERLQAMEEENKMLKEALA  282 (769)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456999999999999888777665

The function of this family is unknown.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.87  E-value=2.4  Score=44.85  Aligned_cols=196  Identities=20%  Similarity=0.187  Sum_probs=122.6

Q ss_pred             hhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchh--HhhhhH------
Q 037185          259 HQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLD--KAQLQS------  330 (533)
Q Consensus       259 k~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~E--Ka~l~a------  330 (533)
                      .=|-.+|+..+.+-+-++.+.+       .|++|...++.+..+++-      .+..+....|.|+  +.+|..      
T Consensus        12 ~IL~~eLe~cq~ErDqyKlMAE-------qLqer~q~LKkk~~el~~------~~~~~~d~~~~~~~~~~~La~lL~~sr   78 (319)
T PF09789_consen   12 LILSQELEKCQSERDQYKLMAE-------QLQERYQALKKKYRELIQ------EAAGFGDPSIPPEKENKNLAQLLSESR   78 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhh------hhcccCCccCCcccchhhHHHHHHHHH
Confidence            3345566666776666666553       355555555543332221      1222333344442  222322      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          331 -EMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       331 -EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                       ..-.|..++.+|..+|.+..-.|++|-.++.......+...--+..      ++=+.|=..+....+.|+.|..+|-.+
T Consensus        79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~------~ere~lV~qLEk~~~q~~qLe~d~qs~  152 (319)
T PF09789_consen   79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP------HEREDLVEQLEKLREQIEQLERDLQSL  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2345666666777777777777777877777777766655432222      666777777788888999999999999


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 037185          410 KLKYDMLMAEKDEINAKVNTLMAEAR----SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDR  485 (533)
Q Consensus       410 k~k~e~L~~EK~~l~~kv~~L~ad~~----sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~  485 (533)
                      -.+.+.+..|.|.-..|++.|=.+++    ..+..|--                  .+.+..---=|+.|+..+++|++.
T Consensus       153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivD------------------IDaLi~ENRyL~erl~q~qeE~~l  214 (319)
T PF09789_consen  153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVD------------------IDALIMENRYLKERLKQLQEEKEL  214 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998866542    23333322                  222322335567888888888877


Q ss_pred             HHHHHh
Q 037185          486 QRMVIL  491 (533)
Q Consensus       486 Q~~~i~  491 (533)
                      .+..|.
T Consensus       215 ~k~~i~  220 (319)
T PF09789_consen  215 LKQTIN  220 (319)
T ss_pred             HHHHHH
Confidence            776664

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.86  E-value=5.1  Score=46.75  Aligned_cols=54  Identities=37%  Similarity=0.450  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185          469 VDELRFRVKELENEVD--RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF  522 (533)
Q Consensus       469 v~eL~~rv~eLE~Eve--~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~  522 (533)
                      +.++..++..++.++.  .|+..-...-+++++++=++-.-++.++.....+..-+
T Consensus       656 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~  711 (908)
T COG0419         656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL  711 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677777777665  35555555556666666667777777776655544443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.77  E-value=4.3  Score=45.13  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             HHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185          357 EDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA  434 (533)
Q Consensus       357 EdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~  434 (533)
                      |.++..+...|.+++.       ....+..-||.|+..++-+...|...|..++.+-   ..|+..|+.++..|+|.|
T Consensus       459 eeeverLQ~lkgelEk-------at~SALdlLkrEKe~~EqefLslqeEfQk~eken---l~ERqkLKs~leKLvaqv  526 (527)
T PF15066_consen  459 EEEVERLQQLKGELEK-------ATTSALDLLKREKETREQEFLSLQEEFQKHEKEN---LEERQKLKSRLEKLVAQV  526 (527)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhc
Confidence            4455555555555554       5556667788999899999999988888875543   358888888888888865

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.73  E-value=2.5  Score=42.13  Aligned_cols=184  Identities=16%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL  335 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL  335 (533)
                      ..+..++.++.....++..|+.+++.-.+.+.++..-|..|+.-++.+-.+-..-++..-.--+++.-|+.++.+++..+
T Consensus         9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~   88 (207)
T PF05010_consen    9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL   88 (207)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence            33444444444444557788888877777777777777777665554444433333333333445555555555555444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH----
Q 037185          336 LEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL----  411 (533)
Q Consensus       336 ~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~----  411 (533)
                      --.-+.|=.+..                 --|.-++        +++.--+.|+..+.+-...|....+.+..||.    
T Consensus        89 E~sfsdl~~rye-----------------k~K~vi~--------~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee  143 (207)
T PF05010_consen   89 EKSFSDLHKRYE-----------------KQKEVIE--------GYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE  143 (207)
T ss_pred             HhhHHHHHHHHH-----------------HHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433333222                 2111111        22222333444333444444444444444433    


Q ss_pred             HHHHhHHhHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHh
Q 037185          412 KYDMLMAEKDEI----NAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASES  464 (533)
Q Consensus       412 k~e~L~~EK~~l----~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~  464 (533)
                      +++.-..|.+.|    .+.+..|-|-++-=.-+|..+++.|.|---+-.+|+.=-+.
T Consensus       144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe  200 (207)
T PF05010_consen  144 KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE  200 (207)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444333    33445555666666667777777777777666555544433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.59  E-value=4.1  Score=47.55  Aligned_cols=177  Identities=20%  Similarity=0.316  Sum_probs=96.0

Q ss_pred             HHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHH-------HHHhhHHhhhchhHhhhhHHHHHHH
Q 037185          264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELK-------IALSDAEEKFTLDKAQLQSEMFCLL  336 (533)
Q Consensus       264 ~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK-------~~lsDAeeK~s~EKa~l~aEiskL~  336 (533)
                      --+.|..+++++|.+|+.-..+.+-+.+|++.|..-|-   ..++.|+       +.+.||--|.+.|-..++       
T Consensus        18 gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLk---ec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~-------   87 (769)
T PF05911_consen   18 GWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALK---ECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK-------   87 (769)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHH---HHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH-------
Confidence            56889999999999999999998999999998887554   3344333       344444444444333322       


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHH-------HHHHH
Q 037185          337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK-------IMDSL  409 (533)
Q Consensus       337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk-------~id~L  409 (533)
                         ..|+.+|.+       +..++..+.+|+.-                  |..-+..+.+-|..|+.       +|.+|
T Consensus        88 ---~~le~~l~e-------~~~~l~~~~~e~~~------------------l~~~l~~~~~~i~~l~~~~~~~e~~~~~l  139 (769)
T PF05911_consen   88 ---SELEAKLAE-------LSKRLAESAAENSA------------------LSKALQEKEKLIAELSEEKSQAEAEIEDL  139 (769)
T ss_pred             ---HHHHHHHHH-------HHHHHHHHHhhhHH------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence               234555555       44444444444333                  33333334444444432       23334


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185          410 KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV  489 (533)
Q Consensus       410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~  489 (533)
                      ..+++..-.|...|+-+|+.|--++.-|.     .|+.++.         -.++.++|+--|=-.++..||-|-.|-|.+
T Consensus       140 ~~~l~~~eken~~Lkye~~~~~keleir~-----~E~~~~~---------~~ae~a~kqhle~vkkiakLEaEC~rLr~l  205 (769)
T PF05911_consen  140 MARLESTEKENSSLKYELHVLSKELEIRN-----EEREYSR---------RAAEAASKQHLESVKKIAKLEAECQRLRAL  205 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555544444443333     2322221         123445555555556777777777666666


Q ss_pred             Hhh
Q 037185          490 ILD  492 (533)
Q Consensus       490 i~e  492 (533)
                      +--
T Consensus       206 ~rk  208 (769)
T PF05911_consen  206 VRK  208 (769)
T ss_pred             Hhc
Confidence            543

The function of this family is unknown.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.58  E-value=8.5  Score=47.29  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=16.4

Q ss_pred             HHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185          172 GRVIQYEDKLRVLNLSLQLSEEEVARL  198 (533)
Q Consensus       172 ~RiielEdELreaneKL~~sEEe~~rl  198 (533)
                      .||.+|+.+|.+....|...++++..+
T Consensus       742 ~ri~el~~~IaeL~~~i~~l~~~l~~l  768 (1353)
T TIGR02680       742 RRIAELDARLAAVDDELAELARELRAL  768 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666655555

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.49  E-value=9.1  Score=47.05  Aligned_cols=53  Identities=15%  Similarity=-0.011  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHHc
Q 037185          470 DELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAFL  523 (533)
Q Consensus       470 ~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~~  523 (533)
                      ..+......+++++...+..+. .+++++..-++++|...++|..-..+.+.|+
T Consensus       938 ~~l~~el~~~~~~~~~a~~~~~-~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~  990 (1353)
T TIGR02680       938 ASGGRELPRLAEALATAEEARG-RAEEKRAEADATLDERAEARDHAIGQLREFA  990 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333344433333333333 2334446666777777777777666666665

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.49  E-value=0.88  Score=52.43  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      |+-+.+...+.+..+.++++.|+..+.....+...+|..+.+++..|.+....++.-.+.-...+..|+.+++.+..--.
T Consensus       357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~  436 (717)
T PF09730_consen  357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAG  436 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444555555566677888888899999999999999999999999988888888555544455557777776665444


Q ss_pred             hhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHH
Q 037185          369 EITGLHEAQERGMQSEINQLKVEVCERDNRIEALN  403 (533)
Q Consensus       369 E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LN  403 (533)
                      +...    ...-.|.|.-.++++|+..-+||...|
T Consensus       437 E~q~----~LnsAQDELvtfSEeLAqLYHHVC~cN  467 (717)
T PF09730_consen  437 ESQG----SLNSAQDELVTFSEELAQLYHHVCMCN  467 (717)
T ss_pred             hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4433    445667778889999999999999988

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.45  E-value=8.5  Score=46.42  Aligned_cols=101  Identities=20%  Similarity=0.326  Sum_probs=50.1

Q ss_pred             hhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch--------hhhhHHHHHHH-----HHHhhHHhhhchhHh
Q 037185          260 QLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL--------SDRNNEVAELK-----IALSDAEEKFTLDKA  326 (533)
Q Consensus       260 ~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L--------s~~d~EIr~LK-----~~lsDAeeK~s~EKa  326 (533)
                      .++.++...+-.+...++++..-..+.-+|++++..+...+        ..+   |++++     +..+.-..-|.--|+
T Consensus       715 ~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~---ir~Yee~~~~~~~a~k~~ef~~q~~  791 (1141)
T KOG0018|consen  715 RTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR---IREYEERELQQEFAKKRLEFENQKA  791 (1141)
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee---eehHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444555555555555666555554433        233   44433     333333333333333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      .+...|....  +.-+..+++.|+..+..++.++.-+.-
T Consensus       792 ~l~~~l~fe~--~~d~~~~ve~~~~~v~~~~~~~~~~~~  828 (1141)
T KOG0018|consen  792 KLENQLDFEK--QKDTQRRVERWERSVEDLEKEIEGLKK  828 (1141)
T ss_pred             HHhhhhhhee--cccHHHHHHHHHHHHHHHHHhHHhhHH
Confidence            3333333333  356677777777777777777666554

>PF13514 AAA_27: AAA domain

Probab=95.27  E-value=9.2  Score=45.72  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=10.7

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185          171 LGRVIQYEDKLRVLNLSLQLSEEEVARL  198 (533)
Q Consensus       171 ~~RiielEdELreaneKL~~sEEe~~rl  198 (533)
                      ..++..++.++..+..++...++.....
T Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (1111)
T PF13514_consen  679 EEELQQLEQELEEAEAELQEAQEALEEW  706 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=95.24  E-value=5.1  Score=46.65  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185          439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEV  483 (533)
Q Consensus       439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev  483 (533)
                      ++|.-|+.++.|=       |+++    -..++|+.+-.+|+.|+
T Consensus       695 ~kieal~~qik~~-------~~~a----~~~~~lkek~e~l~~e~  728 (762)
T PLN03229        695 EKIEALEQQIKQK-------IAEA----LNSSELKEKFEELEAEL  728 (762)
T ss_pred             HHHHHHHHHHHHH-------HHHH----hccHhHHHHHHHHHHHH
Confidence            7777777666653       2222    13477888888887765

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.14  E-value=0.0079  Score=67.64  Aligned_cols=178  Identities=19%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh---hhh
Q 037185          321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE---RDN  397 (533)
Q Consensus       321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~---~~~  397 (533)
                      ...+.+.+++.+..|.++.-.++..+.++..+|..++.++..+..++.++.. .+..-+.|+.|+..|++.-+.   .+.
T Consensus       237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~-~A~~a~~LrDElD~lR~~a~r~~klE~  315 (713)
T PF05622_consen  237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQA-EAREARALRDELDELREKADRADKLEN  315 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3445567788888888888888887777777888888888877777666543 222334455555554443221   122


Q ss_pred             HHHHHHHHH---HHHHHHHHHh-------HHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHH
Q 037185          398 RIEALNKIM---DSLKLKYDML-------MAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRK  467 (533)
Q Consensus       398 ~Ie~LNk~i---d~Lk~k~e~L-------~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~  467 (533)
                      .|+..-+.+   +.+|.+...|       +.-+..+.+.+    .-++.+..+|.....++.+|+.++.......+.+..
T Consensus       316 ~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel----~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~  391 (713)
T PF05622_consen  316 EVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL----KKARALKSQLEEYKKQIQELEQKLSEESRRADKLEF  391 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222   2222222222       22222233322    224456667777777777777777666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 037185          468 LVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFS  507 (533)
Q Consensus       468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfs  507 (533)
                      ....|..++..|+.+.++    +..--..-||.+.+|.++
T Consensus       392 e~~~L~ek~~~l~~eke~----l~~e~~~L~e~~eeL~~~  427 (713)
T PF05622_consen  392 ENKQLEEKLEALEEEKER----LQEERDSLRETNEELECS  427 (713)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhc
Confidence            666666777766666543    222222455666666544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.13  E-value=3.3  Score=44.36  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=9.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 037185          396 DNRIEALNKIMDSLKLKYDML  416 (533)
Q Consensus       396 ~~~Ie~LNk~id~Lk~k~e~L  416 (533)
                      +.++..|+.+.+..+.-|+.+
T Consensus       354 ~~el~~L~Re~~~~~~~Y~~l  374 (498)
T TIGR03007       354 EAELTQLNRDYEVNKSNYEQL  374 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.06  E-value=7.3  Score=43.44  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          434 ARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       434 ~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      +..=.+.|.++...|++..+---.+......+...|..|..++.+|=..+..-
T Consensus       446 ~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~  498 (560)
T PF06160_consen  446 FFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLA  498 (560)
T ss_pred             HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334666777777777666665566666666677777777777665554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.04  E-value=3.2  Score=39.19  Aligned_cols=115  Identities=25%  Similarity=0.360  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHH-----
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALN-----  403 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LN-----  403 (533)
                      ..+|+++--.+..+..++..       ++.++++.+.=   -+.||...-.-|+-+...|...|+++..++..|-     
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k-------~~~ql~~ke~l---ge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~   74 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAK-------LEEQLRQKEEL---GEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGK   74 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777       66666666551   1224444444555555555555555555554443     


Q ss_pred             --HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037185          404 --KIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIA  460 (533)
Q Consensus       404 --k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~  460 (533)
                        +.+.++|.|+..+..+...+.       .++..|+..+......+.++..+|..+-.
T Consensus        75 ~v~~L~h~keKl~~~~~~~~~l~-------~~l~~~~~~~~~~r~~l~~~k~~r~k~~~  126 (177)
T PF13870_consen   75 TVQILTHVKEKLHFLSEELERLK-------QELKDREEELAKLREELYRVKKERDKLRK  126 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              556666777766666665444       44577777777777777777777654433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.01  E-value=3.2  Score=40.98  Aligned_cols=69  Identities=20%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             hHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 037185          375 EAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHME  454 (533)
Q Consensus       375 ~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e  454 (533)
                      .++...|+.+...|+.++.-.+......+.-.+-++.++|.+......              -+..+..+...|+..+..
T Consensus       149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~--------------l~~~l~~Lq~~ln~~R~~  214 (240)
T PF12795_consen  149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR--------------LQQQLQALQNLLNQKRRQ  214 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence            345555555555555544444444444443333334444444444433              344445555566666655


Q ss_pred             HHH
Q 037185          455 HAE  457 (533)
Q Consensus       455 ~~~  457 (533)
                      .++
T Consensus       215 eae  217 (240)
T PF12795_consen  215 EAE  217 (240)
T ss_pred             HHH
Confidence            433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.00  E-value=4  Score=40.07  Aligned_cols=132  Identities=18%  Similarity=0.299  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                      ..|..+..+|..|-+-|+..+..+.-|..++++.+.+|+.+.               .++.-+-..++.|..|-..-+.|
T Consensus        48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~---------------~~k~rl~~~ek~l~~Lk~e~evL  112 (201)
T PF13851_consen   48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ---------------NLKARLKELEKELKDLKWEHEVL  112 (201)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555544444446666666555555433               23333334455555666666666


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHhhhhh--------hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 037185          410 KLKYDMLMAEKDEINAKVNTLMAEARSRD--------NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRV  476 (533)
Q Consensus       410 k~k~e~L~~EK~~l~~kv~~L~ad~~sRd--------~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv  476 (533)
                      ..++.-+-.|++.+..+....+-||--+-        .++..|..-|.+-.-+-.++++.+.---..|..+..++
T Consensus       113 ~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l  187 (201)
T PF13851_consen  113 EQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKL  187 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            66667777777777777666666665442        34555555555555555666666655555555554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.96  E-value=5.6  Score=41.64  Aligned_cols=48  Identities=23%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      .|....+-|+.+.....+.++.+|..+..+..+++.|+.|...+.+-+
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~  195 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE  195 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            444555566666666777778888777777777777777766655443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.90  E-value=5.5  Score=41.24  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHH------HHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKF------QERIAKVETNLSDRNNEVAELKIALSDAEEKFT  322 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kL------qeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s  322 (533)
                      ++|.++...|+.||.+++.+.+.|..-...|.+..|=+-.=      -+-|-.- .+++|.=.+|-.+...+ ++..++.
T Consensus        73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~S-kSfsD~IsRvtAi~~iv-~aDk~il  150 (265)
T COG3883          73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNS-KSFSDLISRVTAISVIV-DADKKIL  150 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHcc-CcHHHHHHHHHHHHHHH-HHhHHHH
Confidence            45555556666666666666666666666665555322110      0011111 12445555665555443 4444432


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                         .+.+.+=..|.+.+..+..++..+.....-+|.....|+..+.
T Consensus       151 ---e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~  193 (265)
T COG3883         151 ---EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKA  193 (265)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1333444556666666666666655555556666666665444

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.86  E-value=13  Score=45.47  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhh
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRD  438 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd  438 (533)
                      .|+.+++.|-.+--++-..|..|.-...+-...++....|.+.|+.+|..++.+|+.|-
T Consensus      1693 ~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence            35555555555444444444444433444444567788888888888887777776553

>PLN02939 transferase, transferring glycosyl groups

Probab=94.85  E-value=9.1  Score=45.89  Aligned_cols=121  Identities=25%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             hhhHHHHHHHHHHhhHH-hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhh
Q 037185          302 DRNNEVAELKIALSDAE-EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERG  380 (533)
Q Consensus       302 ~~d~EIr~LK~~lsDAe-eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~  380 (533)
                      ++.+.|.+|+..|..|. .||+.++      +..|++....++++|..-..+.   -.+++           +|.+--.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~  387 (977)
T PLN02939        328 DLRDKVDKLEASLKEANVSKFSSYK------VELLQQKLKLLEERLQASDHEI---HSYIQ-----------LYQESIKE  387 (977)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhHHH------HHHHHHHHHHHHHHHHhhHHHH---HHHHH-----------HHHHHHHH
Confidence            55666666666666543 3444442      2345566666666666421111   11111           12222234


Q ss_pred             hhhHHHHHHHHHhhh--hhHHHHHHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 037185          381 MQSEINQLKVEVCER--DNRIEALNKIMD-SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG  442 (533)
Q Consensus       381 L~gEie~Lk~El~~~--~~~Ie~LNk~id-~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~  442 (533)
                      .|..+.+|+.|-..+  ..-+..++-+|= .|=..+|.+.-++---......|-.-|-.||..|.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~  452 (977)
T PLN02939        388 FQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIR  452 (977)
T ss_pred             HHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHH
Confidence            555666666655332  222333443332 35556665544432222223333334467777663

>PRK11281 hypothetical protein; Provisional

Probab=94.75  E-value=14  Score=45.04  Aligned_cols=31  Identities=19%  Similarity=0.032  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 037185          330 SEMFCLLEKQALLDARLKEWELQGKALEDKI  360 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdei  360 (533)
                      .-|.++++.|..|-..|-..-.+.+.+-.+.
T Consensus       278 p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~  308 (1113)
T PRK11281        278 PLVAQELEINLQLSQRLLKATEKLNTLTQQN  308 (1113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3388888999999999888444444443333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.71  E-value=2.1  Score=47.61  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          286 VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       286 v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      +..+-..|+++|+....+...|+.                      .-++++.+.-|++|-+.       +-+..-++++
T Consensus       266 ~~~i~~~i~~lk~~n~~l~e~i~e----------------------a~k~s~~i~~l~ek~r~-------l~~D~nk~~~  316 (622)
T COG5185         266 VHIINTDIANLKTQNDNLYEKIQE----------------------AMKISQKIKTLREKWRA-------LKSDSNKYEN  316 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH-------HhhhHHHHHH
Confidence            455556666777766555555443                      33666777777777776       4444444444


Q ss_pred             HHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 037185          366 EKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLK  412 (533)
Q Consensus       366 EK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k  412 (533)
                      .-..|..    .-++--|.+++|++++...+.+|+.|.-.+|.|+..
T Consensus       317 ~~~~mk~----K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q  359 (622)
T COG5185         317 YVNAMKQ----KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ  359 (622)
T ss_pred             HHHHHHH----HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3333332    344556888999999999999999888777777653

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.68  E-value=4.2  Score=43.59  Aligned_cols=33  Identities=36%  Similarity=0.356  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 037185          451 LHMEHAELIAASESSRKLVDELRFRVKELENEV  483 (533)
Q Consensus       451 L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Ev  483 (533)
                      |...-..+-+....+...+..|+....+++.++
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~  347 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLESLL  347 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444444444444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.62  E-value=5.2  Score=40.99  Aligned_cols=29  Identities=14%  Similarity=0.224  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185          398 RIEALNKIMDSLKLKYDMLMAEKDEINAK  426 (533)
Q Consensus       398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k  426 (533)
                      .+..+...+..++..+..+..+.+.+...
T Consensus       204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~  232 (423)
T TIGR01843       204 ERAEAQGELGRLEAELEVLKRQIDELQLE  232 (423)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444443333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.62  E-value=5  Score=39.40  Aligned_cols=102  Identities=20%  Similarity=0.304  Sum_probs=74.5

Q ss_pred             HHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHH
Q 037185          263 GQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALL  342 (533)
Q Consensus       263 ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~L  342 (533)
                      +-+..+.++|+..+.+...-.+.+..+.....+|..-|.....++.+|+..+.+-+    -+|.+    +..+......+
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~----L~~~k~rl~~~   98 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQS----LQNLKARLKEL   98 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
Confidence            34444556667777777777788899999999999999999999999999998533    33443    33445555566


Q ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          343 DARLKEWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       343 e~kL~e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      +.+|+.+.-+...++..+.+++.|+-++..
T Consensus        99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~  128 (201)
T PF13851_consen   99 EKELKDLKWEHEVLEQRFEKLEQERDELYR  128 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777788888888887776654

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.41  E-value=0.27  Score=47.18  Aligned_cols=102  Identities=25%  Similarity=0.342  Sum_probs=41.2

Q ss_pred             HHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185          356 LEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       356 lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~  435 (533)
                      +.+++-.++-.+.++.-    +...+..++..+...+......|..|...+..|+.++..|..+..+.+.-+..|..++.
T Consensus        79 l~~ELael~r~~~el~~----~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~  154 (194)
T PF08614_consen   79 LQEELAELYRSKGELAQ----QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ  154 (194)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccc----cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444332    44455555555555555555556666556666666665555555555555555555555


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037185          436 SRDNHIGQIEEHSRKLHMEHAELIAA  461 (533)
Q Consensus       436 sRd~~I~qme~hl~qL~~e~~~l~~~  461 (533)
                      +-.-+...+++.+..|.-|..+||..
T Consensus       155 ~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  155 ALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666777777777777666543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.34  E-value=0.27  Score=47.18  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh
Q 037185          250 RLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ  329 (533)
Q Consensus       250 ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~  329 (533)
                      |++.+....-+++.+|..+...+..++.++......+..|+..++.|++.+.+++.+|++....+.           .++
T Consensus        82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e-----------~l~  150 (194)
T PF08614_consen   82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE-----------ILQ  150 (194)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred             cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence            334444455556666666666666666666666666666666666666666666666666555554           344


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 037185          330 SEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e  348 (533)
                      .|+.-|+=+..+++.+++.
T Consensus       151 DE~~~L~l~~~~~e~k~~~  169 (194)
T PF08614_consen  151 DELQALQLQLNMLEEKLRK  169 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.32  E-value=0.47  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHhhhhhHHHHhhhh
Q 037185          257 GTHQLQGQLKLAQDDVTTLNAKL  279 (533)
Q Consensus       257 ~ik~LQ~~Le~~q~e~a~~k~Kl  279 (533)
                      .+..|+.+++.+.+|.+++..=+
T Consensus        10 l~~~l~~~~~~~~~E~~~Y~~fL   32 (314)
T PF04111_consen   10 LLEQLDKQLEQAEKERDTYQEFL   32 (314)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777776655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.29  E-value=14  Score=43.06  Aligned_cols=139  Identities=19%  Similarity=0.360  Sum_probs=74.5

Q ss_pred             hhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHH-HHHHhHHhHH--HHHHHHHHHHHHhhhhhhhhhhHHH----------
Q 037185          381 MQSEINQLKVEVCERDNRIEA-LNKIMDSLKL-KYDMLMAEKD--EINAKVNTLMAEARSRDNHIGQIEE----------  446 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~-LNk~id~Lk~-k~e~L~~EK~--~l~~kv~~L~ad~~sRd~~I~qme~----------  446 (533)
                      |..+.+.+++++...+.+|.. |.++=..-+. .++++..+|.  -+.+|+.+|..-|......|..|..          
T Consensus       546 Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  546 LRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            677777777777777777766 3222111111 1233333322  3445555555555555555444321          


Q ss_pred             ----HHHHHHHHHHHHHHhhHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhhhHHHHH-HH------HH
Q 037185          447 ----HSRKLHMEHAELIAASESSRKLVDELR-----------FRVKELENEVDRQRMVILDAAEEKREA-IR------QL  504 (533)
Q Consensus       447 ----hl~qL~~e~~~l~~~~~~~~~~v~eL~-----------~rv~eLE~Eve~Q~~~i~e~aEeKREA-IR------QL  504 (533)
                          .++.+....-+|=.+.+++.+...+..           .-..+|..||++-+....++.--|+|. ||      -.
T Consensus       626 aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeM  705 (786)
T PF05483_consen  626 AESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEM  705 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                122222222222222344444433332           345788899999999999888888875 22      33


Q ss_pred             hhhhHhhhhhHHHHH
Q 037185          505 CFSLEHYRSGYQELR  519 (533)
Q Consensus       505 Cfslehyr~~y~~L~  519 (533)
                      ---.+-|.+-|++..
T Consensus       706 VALMEKHK~qYDkiV  720 (786)
T PF05483_consen  706 VALMEKHKHQYDKIV  720 (786)
T ss_pred             HHHHHHhHHHHHHHH
Confidence            334577777777653

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=15  Score=42.65  Aligned_cols=116  Identities=24%  Similarity=0.268  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHHh---hHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhh
Q 037185          302 DRNNEVAELKIALS---DAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQE  378 (533)
Q Consensus       302 ~~d~EIr~LK~~ls---DAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~  378 (533)
                      +.+-.|..|=+.+-   |+.=|...|+.......--|.++..-|+..+.-+-.....++..+++++.           |.
T Consensus       465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee-----------q~  533 (698)
T KOG0978|consen  465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE-----------QE  533 (698)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence            33444444433333   33445567888888888888888888888888877777778888888877           77


Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 037185          379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVN  428 (533)
Q Consensus       379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~  428 (533)
                      +.|++....+..++-...--|+..++.+.+++...+-|..+.+...+++.
T Consensus       534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le  583 (698)
T KOG0978|consen  534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLE  583 (698)
T ss_pred             HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888777777777777777777777777777766666653

>PLN03188 kinesin-12 family protein; Provisional

Probab=93.86  E-value=22  Score=43.88  Aligned_cols=156  Identities=24%  Similarity=0.238  Sum_probs=84.0

Q ss_pred             hhHHHHHhhHHHHHHhhh----hhhhhh-------------------------hhhHHhHHHHHHHHHHHH----HHHHH
Q 037185          190 LSEEEVARLKSELHSQIE----SAKRDV-------------------------NIKEADLEMERRQVFELQ----NYVRE  236 (533)
Q Consensus       190 ~sEEe~~rlk~el~k~~~----~a~~dl-------------------------~i~k~kLe~ee~ei~~LQ----~~v~E  236 (533)
                      ++-++|..||.+|+-++.    .+.+..                         ...+.+|+.++-+-.+.+    ...+|
T Consensus       990 vll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wisltee 1069 (1320)
T PLN03188        990 VLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEE 1069 (1320)
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHH
Confidence            455888889988887752    221110                         122334444433333332    33356


Q ss_pred             HHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhh
Q 037185          237 LETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSD  316 (533)
Q Consensus       237 LE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD  316 (533)
                      |+..++.-.-=.++..-..+..|.+-++|+.|-.-+--=-+++   +-+-++|||....|-+.=-....=|.+.|.+-+-
T Consensus      1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~---~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaak 1146 (1320)
T PLN03188       1070 LRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARM---LEQYADLEEKHIQLLARHRRIQEGIDDVKKAAAR 1146 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555444221122333344567777777776655221112222   2567889999888877655556667777777665


Q ss_pred             HHhhhc--hhHhhhhHHHHHHHHH-----------HHHHHHHHHH
Q 037185          317 AEEKFT--LDKAQLQSEMFCLLEK-----------QALLDARLKE  348 (533)
Q Consensus       317 AeeK~s--~EKa~l~aEiskL~E~-----------~~~Le~kL~e  348 (533)
                      |=-|=-  -=-..|-|||+-|--+           |.+|..+|+.
T Consensus      1147 ag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188       1147 AGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence            533310  0013566666665544           7777777774

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.74  E-value=9.8  Score=39.49  Aligned_cols=44  Identities=14%  Similarity=0.210  Sum_probs=23.2

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185          408 SLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL  451 (533)
Q Consensus       408 ~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL  451 (533)
                      .++..-..|..=+..++.++.+|.+-...=+....+|+....++
T Consensus       152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~  195 (265)
T COG3883         152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEK  195 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555666666666666555555444444444443

>PF13166 AAA_13: AAA domain

Probab=93.65  E-value=15  Score=41.17  Aligned_cols=65  Identities=25%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 037185          387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKL  451 (533)
Q Consensus       387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL  451 (533)
                      .++.++....+.+..+.+.+..++.++..+..++..++.++..|.+.+.+-+.-+..+...|..+
T Consensus       407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33344433444555555555566666666666666666666666666666666666677766666

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=93.64  E-value=12  Score=40.20  Aligned_cols=61  Identities=13%  Similarity=-0.019  Sum_probs=34.9

Q ss_pred             HHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037185          291 ERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWEL  351 (533)
Q Consensus       291 eri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~  351 (533)
                      .++..+.++......++...+..+....+.+.-+++.+...|..+..+...++..+..++.
T Consensus       140 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  200 (457)
T TIGR01000       140 NLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN  200 (457)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444445555555665555555555566666666666666666666666666655433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=17  Score=41.64  Aligned_cols=55  Identities=31%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185          326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI  405 (533)
Q Consensus       326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~  405 (533)
                      +-|-+|-+.|-|+|++|.-....           +|+                  =|-|-|-||.|+-..+..|+-||..
T Consensus       166 ~RllseYSELEEENIsLQKqVs~-----------LR~------------------sQVEyEglkheikRleEe~elln~q  216 (772)
T KOG0999|consen  166 ARLLSEYSELEEENISLQKQVSN-----------LRQ------------------SQVEYEGLKHEIKRLEEETELLNSQ  216 (772)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHH-----------Hhh------------------hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            35566777788888887766554           121                  1223344555555556677888876


Q ss_pred             HHHH
Q 037185          406 MDSL  409 (533)
Q Consensus       406 id~L  409 (533)
                      +++.
T Consensus       217 ~ee~  220 (772)
T KOG0999|consen  217 LEEA  220 (772)
T ss_pred             HHHH
Confidence            6654

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.40  E-value=3.3  Score=41.34  Aligned_cols=15  Identities=20%  Similarity=0.530  Sum_probs=7.5

Q ss_pred             hhhhHHHHHHHHHhh
Q 037185          380 GMQSEINQLKVEVCE  394 (533)
Q Consensus       380 ~L~gEie~Lk~El~~  394 (533)
                      .|+.+++.|+.||..
T Consensus       135 ~l~~e~erL~aeL~~  149 (202)
T PF06818_consen  135 SLRREVERLRAELQR  149 (202)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            355555555555433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.35  E-value=15  Score=41.63  Aligned_cols=46  Identities=28%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHH
Q 037185          439 NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVD  484 (533)
Q Consensus       439 ~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve  484 (533)
                      ..+...+.|+.+|+-+..++-+....+...++..|.+ +..|++.|.
T Consensus       335 ~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~  381 (557)
T COG0497         335 AQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT  381 (557)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666667777777888888865 467888874

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.34  E-value=6.4  Score=38.60  Aligned_cols=18  Identities=33%  Similarity=0.398  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 037185          331 EMFCLLEKQALLDARLKE  348 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~e  348 (533)
                      .|..+..++..|..++.+
T Consensus        28 ~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   28 ELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=93.27  E-value=12  Score=39.15  Aligned_cols=150  Identities=19%  Similarity=0.256  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHh
Q 037185          247 EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKA  326 (533)
Q Consensus       247 s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa  326 (533)
                      -+++|..|.+.-+.|..++..++.--+.+-.++-..-.|..++--.|..||+++.-.   +-.|+..|-|--=+.|+++ 
T Consensus       106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps---~~qlR~~llDPAinl~F~r-  181 (330)
T KOG2991|consen  106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPS---VAQLRSTLLDPAINLFFLR-  181 (330)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHhhChHHHHHHHH-
Confidence            346677777777778888888887777777777777777777777777777765532   4456666666555555543 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWE-----LQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEA  401 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e-----~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~  401 (533)
                       |+.++-.--.....+...|..|-     -.++-|=++-|-|+.|+.|++.      +.-.|-|-.|-.+++=-+..-+.
T Consensus       182 -lK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~------q~s~Gria~Le~eLAmQKs~seE  254 (330)
T KOG2991|consen  182 -LKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH------QASEGRIAELEIELAMQKSQSEE  254 (330)
T ss_pred             -HHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh------hhhcccHHHHHHHHHHHHhhHHH
Confidence             33333333333333444444453     3566788888999999988864      56667777776666433333333


Q ss_pred             HHHHHH
Q 037185          402 LNKIMD  407 (533)
Q Consensus       402 LNk~id  407 (533)
                      |...++
T Consensus       255 lkssq~  260 (330)
T KOG2991|consen  255 LKSSQE  260 (330)
T ss_pred             HHHhHH
Confidence            333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.25  E-value=14  Score=44.50  Aligned_cols=186  Identities=22%  Similarity=0.214  Sum_probs=111.6

Q ss_pred             hchhhhhHHHHHHHHHHhhHHhhh----chhHh-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          298 TNLSDRNNEVAELKIALSDAEEKF----TLDKA-QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       298 t~Ls~~d~EIr~LK~~lsDAeeK~----s~EKa-~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      +=+-+.-.||..||..|..|.+|-    +.|+. +..+|.-...+.+..++.++.       .++.+++.+.+--+-+.+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~-------~~~~~l~~~~e~~~~~~~  476 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELE-------NLEKQLKDLTELYMNQLE  476 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Confidence            335578889999999999999983    33333 133333344444444444444       477777777664432222


Q ss_pred             hhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185          373 LHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH  452 (533)
Q Consensus       373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~  452 (533)
                          ....|+.+..+|+..|.....+++.+...+..++..+                     .--+.-|.+|+.--.-++
T Consensus       477 ----~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l---------------------~~~e~ii~~~~~se~~l~  531 (1041)
T KOG0243|consen  477 ----IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL---------------------KEEEEIISQQEKSEEKLV  531 (1041)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence                3334555555555555444444444444444333332                     122233334433333333


Q ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhH
Q 037185          453 MEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGY  515 (533)
Q Consensus       453 ~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y  515 (533)
                      =..++|-...+.+...++-|-.++..+.+.-...+.+|.+-..+=-+-+++|-=.+.+-=+.+
T Consensus       532 ~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~  594 (1041)
T KOG0243|consen  532 DRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQ  594 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhH
Confidence            336666677788888888888888888888888888888887777777777777777777766

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.03  E-value=3.7  Score=37.76  Aligned_cols=95  Identities=22%  Similarity=0.368  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh---hhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037185          385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA---RSRDNHIGQIEEHSRKLHMEHAELIAA  461 (533)
Q Consensus       385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~---~sRd~~I~qme~hl~qL~~e~~~l~~~  461 (533)
                      ++.|...|-.++.+|..+       +.++..|..+++.+.++|..|+...   ..-...+..+...+..|.-.+.-+.-=
T Consensus        18 ve~L~s~lr~~E~E~~~l-------~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel   90 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASL-------QEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL   90 (120)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433       3333344444444444444444433   445556666666666666555544444


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          462 SESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       462 ~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      .++-...|.||+..|.+|-.....|
T Consensus        91 lGEK~E~veEL~~Dv~DlK~myr~Q  115 (120)
T PF12325_consen   91 LGEKSEEVEELRADVQDLKEMYREQ  115 (120)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556677777777776665554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.99  E-value=22  Score=41.40  Aligned_cols=173  Identities=20%  Similarity=0.192  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 037185          224 RRQVFELQNYVRELETRLSE----SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN  299 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~----l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~  299 (533)
                      +.+|--||.+..+=+.....    |.-|...+.-|++.++....-|..++.+..++-..|+.=+.-..+...+-.-+.+.
T Consensus       239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~  318 (786)
T PF05483_consen  239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEED  318 (786)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777555443333333    33344566667788888888888888888888888876665555544455555555


Q ss_pred             hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK-------EWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~-------e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      |..-...|-.|-+.-...-+-+.--|++-...+..+.-.+..|.+-|+       .++-+..++-.++..--++-.||..
T Consensus       319 lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk  398 (786)
T PF05483_consen  319 LQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTK  398 (786)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHH
Confidence            554444444444444334444444455555555555555555555444       4344444444444444444444443


Q ss_pred             hhhHhhhhhhhHHHHHHHHHhhhhhHHH
Q 037185          373 LHEAQERGMQSEINQLKVEVCERDNRIE  400 (533)
Q Consensus       373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie  400 (533)
                          +-..--.+++-|+..++...+.+.
T Consensus       399 ----~k~~ke~eleeL~~~L~e~qkll~  422 (786)
T PF05483_consen  399 ----QKNNKEVELEELKKILAEKQKLLD  422 (786)
T ss_pred             ----HhhhhHHHHHHHHHHHHHHHHHHH
Confidence                111222235556666666664443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.83  E-value=29  Score=42.33  Aligned_cols=112  Identities=12%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhch---hHh-
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTL---DKA-  326 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~---EKa-  326 (533)
                      ...++....-+.+++...+.+..+..++.+=-+.+..-+..+|..+...+..+++.|...+.+-++.--+-..   +++ 
T Consensus       175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~  254 (1109)
T PRK10929        175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSG  254 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence            3333333333333444444444433333322223333344455555555555555555544333322111000   121 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ  362 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq  362 (533)
                      .....|.++.+.|..|-..|-..-.+...+-.+..+
T Consensus       255 ~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~  290 (1109)
T PRK10929        255 DLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQ  290 (1109)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234458888899999999998854444444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.82  E-value=11  Score=43.65  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhhchhhhhHHHHHHHH-------HHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185          288 KFQERIAKVETNLSDRNNEVAELKI-------ALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       288 kLqeri~~lkt~Ls~~d~EIr~LK~-------~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e  348 (533)
                      +|.+|+......-+.+..++..+-+       .+|.|+.+|+-|-..+...+..|......+..++..
T Consensus       597 ~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~  664 (717)
T PF10168_consen  597 KLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY  664 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444544444444444444443322       477788887777777666666655555555444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=92.81  E-value=18  Score=39.75  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             HHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh
Q 037185          174 VIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE  207 (533)
Q Consensus       174 iielEdELreaneKL~~sEEe~~rlk~el~k~~~  207 (533)
                      +..+=+||++.++-+-.++|...+||.++++...
T Consensus       262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~  295 (455)
T KOG3850|consen  262 LDAILEELREIKETQALLEESYERLKEQIKRDYK  295 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455568999999999999999999998885543

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.76  E-value=25  Score=41.33  Aligned_cols=216  Identities=20%  Similarity=0.250  Sum_probs=115.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHH-------HHHHHHHHhh
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQ-------NYVRELETRL  241 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ-------~~v~ELE~~~  241 (533)
                      ++..|+-++|+.+.++.--+...++.+.+++........  ..  ...+.+.-..+..+...|       ..+..||-.+
T Consensus        25 ~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~a--qk--~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~L  100 (916)
T KOG0249|consen   25 PLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMA--QK--EDMEERITTLEKRFLNAQRESTSIHDLNDKLENEL  100 (916)
T ss_pred             CCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHh--hh--cccccccchHHHHHHhccCCCCCcccchHHHHHHH
Confidence            445678889999999998888888998888644333221  00  000111111233333333       2233344332


Q ss_pred             hcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------hhhHHHHHHH
Q 037185          242 SESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------DRNNEVAELK  311 (533)
Q Consensus       242 ~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------~~d~EIr~LK  311 (533)
                      .+=   +.++--..+++..||.+|+.+.+...+--+ +++---=-++||.|++.+-..-.          .++.++..+-
T Consensus       101 ank---da~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~n  176 (916)
T KOG0249|consen  101 ANK---DADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELN  176 (916)
T ss_pred             hCc---chhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            222   233444567888999999988886554433 32222223445555544433322          3333333333


Q ss_pred             HHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHH
Q 037185          312 IALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVE  391 (533)
Q Consensus       312 ~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~E  391 (533)
                      +.|.+|.++.-.+                         +.+...+-+..-       |+.-+|--.++.-...++.|-.+
T Consensus       177 aeL~rarqreemn-------------------------eeh~~rlsdtvd-------ErlqlhlkermaAle~kn~L~~e  224 (916)
T KOG0249|consen  177 AELQRARQREKMN-------------------------EEHNKRLSDTVD-------ERLQLHLKERMAALEDKNRLEQE  224 (916)
T ss_pred             HHHHHHHHHHHhh-------------------------hhhccccccccH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333331111                         111111111111       22223333344445567788888


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 037185          392 VCERDNRIEALNKIMDSLKLKYDMLMAEKDEIN  424 (533)
Q Consensus       392 l~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~  424 (533)
                      +..-.+.+.++|.+=+.|...++.|..|.+.++
T Consensus       225 ~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  225 LESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            888888999999998888888888888888877

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=92.72  E-value=20  Score=40.10  Aligned_cols=176  Identities=14%  Similarity=0.150  Sum_probs=91.8

Q ss_pred             hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH-----------HHhhhhchhhHhhhhhhhHHHH
Q 037185          319 EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET-----------EKMEITGLHEAQERGMQSEINQ  387 (533)
Q Consensus       319 eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea-----------EK~E~~~~~~~q~~~L~gEie~  387 (533)
                      +++-.|+.--.+++.+++.....|+..+.+       +|++++.++.           +|+-.-    +--..|.-..||
T Consensus       312 ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d-------~EAq~r~l~s~~~~q~~~~h~~ka~~~----~~~~~l~~~~ec  380 (554)
T KOG4677|consen  312 EETRVELPFSAEDSAHIQDQYTLLRSQIID-------IEAQDRHLESAGQTQIFRKHPRKASIL----NMPLVLTLFYEC  380 (554)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhHHHHHHhhhHhhhhh----hchHHHHHHHHH
Confidence            344556666677888999999999999998       5555555544           222110    011123333334


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhh--hhhhhhhHHHHHHHHH--HHHHHHHHhhH
Q 037185          388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARS--RDNHIGQIEEHSRKLH--MEHAELIAASE  463 (533)
Q Consensus       388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~s--Rd~~I~qme~hl~qL~--~e~~~l~~~~~  463 (533)
                      ++.|-.       .--+.+..-+.+.-.=+-+|   ..++..|.++++.  |++...+++.-++||-  +.+....-+. 
T Consensus       381 ~~~e~e-------~~~~~~~r~~~~~qski~dk---~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~-  449 (554)
T KOG4677|consen  381 FYHETE-------AEGTFSSRVNLKKQSKIPDK---QYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLER-  449 (554)
T ss_pred             HHHHHH-------HhhhhhhhccchhhccCcch---HHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHH-
Confidence            433221       11111222222222222233   3455566666654  5788999999999986  3343333222 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHH--HHHHHH
Q 037185          464 SSRKLVDELRFRVKELENEVD---RQRMVILDAAEEKREAIRQLCFSLEHYRSGYQ--ELRQAF  522 (533)
Q Consensus       464 ~~~~~v~eL~~rv~eLE~Eve---~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~--~L~~~~  522 (533)
                       +-.-..-|..++.-|++-|.   --...+-...+.|+     +-.+++.||+-..  ++|.+.
T Consensus       450 -v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~-----~~~v~~l~~d~~~~~q~r~a~  507 (554)
T KOG4677|consen  450 -VVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKC-----HDVVIDLYRDLKDRQQLRAAR  507 (554)
T ss_pred             -HHHHHhhhhhhHHHHHHHhccccccceeeccCCCccc-----ccccchHhhhhhhhHHHHHHH
Confidence             22223335577777777765   22223333445553     3456777777554  555544

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.65  E-value=12  Score=37.40  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL  335 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL  335 (533)
                      ..+..++.+.+.+..++++...-|..-.+..-++-+.|..|+.+-+.+-..|.++...+.--+++|-.=|++....|..-
T Consensus        69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~A  148 (207)
T PF05010_consen   69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKA  148 (207)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666777777777777777777777777888888888888888888888888777777777777766655555


Q ss_pred             HHHHHHHHHHH
Q 037185          336 LEKQALLDARL  346 (533)
Q Consensus       336 ~E~~~~Le~kL  346 (533)
                      .++++.+..+.
T Consensus       149 Neei~~v~~~~  159 (207)
T PF05010_consen  149 NEEIAQVRSKH  159 (207)
T ss_pred             HHHHHHHHHHh
Confidence            55555554443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.62  E-value=19  Score=39.66  Aligned_cols=54  Identities=11%  Similarity=0.131  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 037185          399 IEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH  452 (533)
Q Consensus       399 Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~  452 (533)
                      |+..-+.|+.+..-.--+..+....+.+|+++--.+..|++.|..-+++|..|.
T Consensus       212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lE  265 (499)
T COG4372         212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLE  265 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444455555555555555555555555554433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=92.57  E-value=16  Score=38.57  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=21.5

Q ss_pred             hhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 037185          378 ERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAK  426 (533)
Q Consensus       378 ~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~k  426 (533)
                      .++|..+|-.++....+.-..|..|-..+.....++--+-.+.|.+..+
T Consensus       160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rke  208 (294)
T COG1340         160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKE  208 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544444444444444443333333333333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.56  E-value=21  Score=39.96  Aligned_cols=47  Identities=26%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             hhhchhHhhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHhHH
Q 037185          319 EKFTLDKAQLQSEMFCLLEKQALLDARLK-----EWELQGKALEDKIRQCET  365 (533)
Q Consensus       319 eK~s~EKa~l~aEiskL~E~~~~Le~kL~-----e~e~~~~~lEdeirqlea  365 (533)
                      +.|.++.-.+..+|..+.+........|.     +.+.....+.++|.+++.
T Consensus       241 ~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd  292 (560)
T PF06160_consen  241 EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD  292 (560)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777776666655     344444555555555555

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.53  E-value=5.9  Score=42.58  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHH
Q 037185          255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC  334 (533)
Q Consensus       255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEisk  334 (533)
                      .|+++++-+-++.-|.|...++..=++-+.+..-.++-+.+.|.                         +.-+|..=+.+
T Consensus        84 ~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~-------------------------~~q~LE~li~~  138 (401)
T PF06785_consen   84 DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKG-------------------------DIQHLEGLIRH  138 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------------------------hHHHHHHHHHH
Confidence            35666666666666666666655544444444444444444333                         23345555668


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHH
Q 037185          335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEI  385 (533)
Q Consensus       335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEi  385 (533)
                      +-|+|..|+-+|.++--+|.-.|++-.++.-|-+|+-.    +.+.|..|-
T Consensus       139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la----yqq~L~~ey  185 (401)
T PF06785_consen  139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA----YQQELNDEY  185 (401)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence            88999999999999988998899988888888787754    445554443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.53  E-value=20  Score=39.63  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh----hHHHHHHHHHHHHHHHHHh--------------hHhHHH
Q 037185          406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG----QIEEHSRKLHMEHAELIAA--------------SESSRK  467 (533)
Q Consensus       406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~----qme~hl~qL~~e~~~l~~~--------------~~~~~~  467 (533)
                      ++.|+.+.+.+..|...++-.|..|.+++.+...+..    .+..|+..+......+++.              -+.+.+
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~  355 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSR  355 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777777777777766665533    3344444444333222222              234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185          468 LVDELRFRVKELENEVDRQRMVILDAA  494 (533)
Q Consensus       468 ~v~eL~~rv~eLE~Eve~Q~~~i~e~a  494 (533)
                      .-+.+..|+.+-+.|+.+-+..++..+
T Consensus       356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~  382 (511)
T PF09787_consen  356 QKSPLQLKLKEKESEIQKLRNQLSARA  382 (511)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555556777777777777777776655

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PLN02939 transferase, transferring glycosyl groups

Probab=92.51  E-value=30  Score=41.72  Aligned_cols=85  Identities=28%  Similarity=0.350  Sum_probs=57.5

Q ss_pred             hhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185          257 GTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL  336 (533)
Q Consensus       257 ~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~  336 (533)
                      ....|..+--.+..|+..+|.++    -+|.+-.+++..++..-+-++.-+++|+-.+..|++..+ +=+.|+-|  .+-
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~  299 (977)
T PLN02939        227 ELDVLKEENMLLKDDIQFLKAEL----IEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS-KLSPLQYD--CWW  299 (977)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hccchhHH--HHH
Confidence            34444455555667777777777    677888899999999999999999999999988877643 22233333  255


Q ss_pred             HHHHHHHHHHHH
Q 037185          337 EKQALLDARLKE  348 (533)
Q Consensus       337 E~~~~Le~kL~e  348 (533)
                      |....|+.-|..
T Consensus       300 ~~~~~~~~~~~~  311 (977)
T PLN02939        300 EKVENLQDLLDR  311 (977)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.46  E-value=3.1  Score=37.94  Aligned_cols=54  Identities=24%  Similarity=0.437  Sum_probs=42.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 037185          394 ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEH  447 (533)
Q Consensus       394 ~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~h  447 (533)
                      +....+-.|+..|...|.-.+.|-.+++.|.+-+.+|.+.-.+|...|..+...
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak   66 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK   66 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677777788888888999999999999999999999998888444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=92.41  E-value=11  Score=36.44  Aligned_cols=49  Identities=16%  Similarity=0.418  Sum_probs=33.9

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          379 RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       379 ~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      ..+...+..|+..+..-...+..|...|..++.++..+..++..|.+..
T Consensus        94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~  142 (221)
T PF04012_consen   94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE  142 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566667777777777777777777777777777777776666554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=92.21  E-value=37  Score=42.05  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHHhhhHHHHHhhHHHHHHhh
Q 037185          177 YEDKLRVLNLSLQLSEEEVARLKSELHSQI  206 (533)
Q Consensus       177 lEdELreaneKL~~sEEe~~rlk~el~k~~  206 (533)
                      .+.++.++..+|+...+++.++.+++....
T Consensus       738 ~~~~i~e~~~~l~~~~~el~~~~~~~e~~~  767 (1294)
T KOG0962|consen  738 IDKEIPELEKELQEVYEELGDLSEEEEDDE  767 (1294)
T ss_pred             HhhhhhHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            456778889999999999988876655443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=92.10  E-value=0.26  Score=52.00  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             hhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHH
Q 037185          209 AKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLK  288 (533)
Q Consensus       209 a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~k  288 (533)
                      -..||.---+.|-.-|..+..|+..|..+..+..+|.   ..+-.+...+.+++..|..+...|..+...+..=...|..
T Consensus        26 s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLs---s~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~  102 (326)
T PF04582_consen   26 SPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLS---SDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS  102 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            3456666666777777777777777777776666654   3345555778888888888888888888888888888888


Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWEL  351 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~  351 (533)
                      |+..+......++++...|..+...++           +|++.++-+.-.++.|+.|++.+|.
T Consensus       103 lS~~ls~h~ssIS~Lqs~v~~lsTdvs-----------NLksdVSt~aL~ItdLe~RV~~LEs  154 (326)
T PF04582_consen  103 LSSTLSDHSSSISDLQSSVSALSTDVS-----------NLKSDVSTQALNITDLESRVKALES  154 (326)
T ss_dssp             ---------------HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhHHHHHHhhhhhhhhhh-----------hhhhhhhhhcchHhhHHHHHHHHhc
Confidence            888888888888888888888888887           8999999999999999999998543

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PLN03188 kinesin-12 family protein; Provisional

Probab=91.95  E-value=40  Score=41.80  Aligned_cols=125  Identities=20%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             HHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhh----------hHHHHHHHHHHhhH---HhhhchhHhhhhH
Q 037185          264 QLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDR----------NNEVAELKIALSDA---EEKFTLDKAQLQS  330 (533)
Q Consensus       264 ~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~----------d~EIr~LK~~lsDA---eeK~s~EKa~l~a  330 (533)
                      +|+..|.++..+++.|+-.-+||  |++.|+.|+++|...          .+-+=.|...+.-.   .-+--+|-..-..
T Consensus       968 e~~~~~~e~~~~~~~~d~~ErEv--ll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~ 1045 (1320)
T PLN03188        968 ELKRVQDELEHYRNFYDMGEREV--LLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESP 1045 (1320)
T ss_pred             HHHHHHHHHHHHHhhccchhHHH--HHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccch
Confidence            55566777777888886444555  577888888777622          12222222222100   0000000001111


Q ss_pred             HHHHHHHHHHHHHHHHH----------HHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHH
Q 037185          331 EMFCLLEKQALLDARLK----------EWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKV  390 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~----------e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~  390 (533)
                      |..=++|+...++...+          ++|....+.|....+|+.||.=+++|-+|-++.|+|-+-+|-.
T Consensus      1046 e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ 1115 (1320)
T PLN03188       1046 EKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQ 1115 (1320)
T ss_pred             hHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223444444444333          6778888889999999999999999999999999999877543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.94  E-value=1.8  Score=44.99  Aligned_cols=49  Identities=24%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhh
Q 037185          323 LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEIT  371 (533)
Q Consensus       323 ~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~  371 (533)
                      .+-..+..++.+|..+...|...|++++.+...+..++..++++..+..
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666666666666666666666666666666666555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.89  E-value=25  Score=39.33  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             hhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh
Q 037185          240 RLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE  319 (533)
Q Consensus       240 ~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee  319 (533)
                      ...-|+.+.+=+.+|+..+..++-+..-+.....-.+-=|...+.   .|-+-..+.+++=.. -++|++|++.|-.+.+
T Consensus       284 l~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl---~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~e  359 (521)
T KOG1937|consen  284 LIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKL---QLREELKNLETEDEE-IRRIQELEQDLEAVDE  359 (521)
T ss_pred             HHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHhcccchHHH-HHHHHHHHHHHHHHHH
Confidence            344566666666666666666666555555544333333433332   233333344432222 5888888888886666


Q ss_pred             hhc---hhHhhhhHHHHHHHH
Q 037185          320 KFT---LDKAQLQSEMFCLLE  337 (533)
Q Consensus       320 K~s---~EKa~l~aEiskL~E  337 (533)
                      .|-   -.-.+|.+++.+|=.
T Consensus       360 ei~~~eel~~~Lrsele~lp~  380 (521)
T KOG1937|consen  360 EIESNEELAEKLRSELEKLPD  380 (521)
T ss_pred             HHHhhHHHHHHHHHHHhcCCc
Confidence            654   444455555554443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.88  E-value=28  Score=39.94  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHH
Q 037185          483 VDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQ  516 (533)
Q Consensus       483 ve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~  516 (533)
                      .++|-...++-.-.-||+=--|-=-|+||||..+
T Consensus       227 AekQlEEALeTlq~EReqk~alkkEL~q~~n~e~  260 (772)
T KOG0999|consen  227 AEKQLEEALETLQQEREQKNALKKELSQYRNAED  260 (772)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence            3555555566666666665556666788887765

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=91.87  E-value=23  Score=39.00  Aligned_cols=211  Identities=18%  Similarity=0.182  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhh---hhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 037185          167 YEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIE---SAKRDVNIKEADLEMERRQVFELQNYVRELETRLSE  243 (533)
Q Consensus       167 ~~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~---~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~  243 (533)
                      .+++..-+-.+-.||..+.+.+..-|-+-.....+|++-..   .+...+.-.+.++-....+.-.++.|-.+|.+.+..
T Consensus        76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~  155 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT  155 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777778888888877777776665555566665431   111111111111111122222222333333322211


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhh---HHhh
Q 037185          244 SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSD---AEEK  320 (533)
Q Consensus       244 l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsD---AeeK  320 (533)
                      |-   ++-.++.+....|+++-+-+|--    -++|..++.+..+=+++|..-..+|..+.+.|..+...+..   |-+.
T Consensus       156 l~---~qr~ql~aq~qsl~a~~k~LQ~s----~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq  228 (499)
T COG4372         156 LA---EQRRQLEAQAQSLQASQKQLQAS----ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQ  228 (499)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   22233333333343333333321    24556666666666777777777777777777776666543   3444


Q ss_pred             hchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhH
Q 037185          321 FTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSE  384 (533)
Q Consensus       321 ~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gE  384 (533)
                      .-.+-.+..+-|+.+--.++.-++.+.+-|.+.+-+|.+.--++-|.++++..|.++..--++.
T Consensus       229 ~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~  292 (499)
T COG4372         229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA  292 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5556667777788887778888888887777777777777777777777776555554433333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.77  E-value=21  Score=38.36  Aligned_cols=10  Identities=10%  Similarity=0.411  Sum_probs=4.0

Q ss_pred             HHHHHHHHhh
Q 037185          289 FQERIAKVET  298 (533)
Q Consensus       289 Lqeri~~lkt  298 (533)
                      |+.++++|.+
T Consensus       109 ~~~~~~rL~a  118 (457)
T TIGR01000       109 LKDQKKSLDT  118 (457)
T ss_pred             HHHHHHHHHH
Confidence            3334444433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.68  E-value=38  Score=41.04  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE  364 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqle  364 (533)
                      -++.++-+|.+++.-+..+-++++.++.-+..++.+..
T Consensus       259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~  296 (1072)
T KOG0979|consen  259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQ  296 (1072)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHH
Confidence            55666666666666666666664443333333433333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.64  E-value=32  Score=40.16  Aligned_cols=235  Identities=20%  Similarity=0.256  Sum_probs=138.9

Q ss_pred             hhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHH
Q 037185          208 SAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVL  287 (533)
Q Consensus       208 ~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~  287 (533)
                      ..++-|.-+...++.++....-||   .+|..+.       +.-.+++..+....++|..+.+-|.+.-..|.+.+..|.
T Consensus       356 iLq~SLqDK~AElevERv~sktLQ---~ELsrAq-------ea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve  425 (739)
T PF07111_consen  356 ILQHSLQDKAAELEVERVGSKTLQ---AELSRAQ-------EARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVE  425 (739)
T ss_pred             HHHHHHhHHHHHHHHHHHhhHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445666667777777777777   5555442       344456677777777777777777777777766554433


Q ss_pred             HHHHHHHHHhhchhhh---hH----------HHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037185          288 KFQERIAKVETNLSDR---NN----------EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGK  354 (533)
Q Consensus       288 kLqeri~~lkt~Ls~~---d~----------EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~  354 (533)
                      .-..||..|..-|+.-   =|          -+..|.+.-++.   +.|.=..|.+|+--|-++...|..+|.   .-+.
T Consensus       426 ~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~---~pp~~~dL~~ELqqLReERdRl~aeLq---lSa~  499 (739)
T PF07111_consen  426 QALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPP---SPPSVTDLSLELQQLREERDRLDAELQ---LSAR  499 (739)
T ss_pred             HHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCC---CCCchhhHHHHHHHHHHHHHHHHHHHH---HhHH
Confidence            3333444444444411   11          122233332322   455666889999999999999988887   2344


Q ss_pred             hHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HhHHhHHHHH---
Q 037185          355 ALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYD-------MLMAEKDEIN---  424 (533)
Q Consensus       355 ~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e-------~L~~EK~~l~---  424 (533)
                      ++..++..... +.+.      -...|...+.+|-.++......|..+-..+......+-       .|+.|...-.   
T Consensus       500 liqqeV~~ArE-qgea------E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y  572 (739)
T PF07111_consen  500 LIQQEVGRARE-QGEA------ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVY  572 (739)
T ss_pred             HHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555544433 2222      23566667777777777777777766655554443322       3333332211   


Q ss_pred             -HHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhHhH
Q 037185          425 -AKVNTLMAEARSRD-NHIGQIEEHSRKLHMEHAELIAASESS  465 (533)
Q Consensus       425 -~kv~~L~ad~~sRd-~~I~qme~hl~qL~~e~~~l~~~~~~~  465 (533)
                       .-+..-++++.+|= +++..||.+||.-+-||++-+-.-.-+
T Consensus       573 ~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~  615 (739)
T PF07111_consen  573 ERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQI  615 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12233446777774 678999999999999998765444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK11281 hypothetical protein; Provisional

Probab=91.57  E-value=41  Score=41.18  Aligned_cols=65  Identities=20%  Similarity=0.231  Sum_probs=42.2

Q ss_pred             hhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185          373 LHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR  437 (533)
Q Consensus       373 ~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR  437 (533)
                      |.++++..|+.|-..++.++.-.......-|+-.+-++.+.|.+..+...+...|..|-+-++.|
T Consensus       189 l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k  253 (1113)
T PRK11281        189 LRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK  253 (1113)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777666666666666666666666666666666666666666666655553

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.55  E-value=3.5  Score=37.94  Aligned_cols=19  Identities=26%  Similarity=0.517  Sum_probs=8.8

Q ss_pred             hHhhhhHHHHHHHHHHHHH
Q 037185          324 DKAQLQSEMFCLLEKQALL  342 (533)
Q Consensus       324 EKa~l~aEiskL~E~~~~L  342 (533)
                      +|..+..||.+|..++..+
T Consensus        45 ~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   45 ERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444555544444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=91.55  E-value=6.8  Score=44.09  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk  199 (533)
                      ...+|  .+++-|+   +||.-.+++|+++.
T Consensus       154 S~~~~--~~~EaL~---ekLk~~~een~~lr  179 (596)
T KOG4360|consen  154 SAFQR--ELLEALQ---EKLKPLEEENTQLR  179 (596)
T ss_pred             hhHHH--HHHHHHH---hhcCChHHHHHHHH
Confidence            34444  6777777   99999999999994

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=91.43  E-value=4.8  Score=35.18  Aligned_cols=60  Identities=23%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185          382 QSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI  441 (533)
Q Consensus       382 ~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I  441 (533)
                      +.|+..+.....+....+...-.++..+..++--|..||+..+.+.-.+|-.+.++++.+
T Consensus         2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~   61 (96)
T PF08647_consen    2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEM   61 (96)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            334444444443334444444444455555555555555555555544444444444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=91.37  E-value=21  Score=37.40  Aligned_cols=218  Identities=19%  Similarity=0.263  Sum_probs=98.2

Q ss_pred             hhhhHHHHHhhhhhHHHHhhhhHHHHHH-HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHH
Q 037185          258 THQLQGQLKLAQDDVTTLNAKLDYERMQ-VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLL  336 (533)
Q Consensus       258 ik~LQ~~Le~~q~e~a~~k~Kle~e~~e-v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~  336 (533)
                      -++||.+-..+.++.-.....-+..+.+ +.++|.+|..+.+.+....+.-.++...-..-.+||       ++=|..-.
T Consensus        80 CRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKl-------K~l~eQye  152 (309)
T PF09728_consen   80 CRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKL-------KSLIEQYE  152 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            3445544444444433333333333333 567777777777777654444333332222221211       11111111


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185          337 EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML  416 (533)
Q Consensus       337 E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L  416 (533)
                      -.-.|++..++..+++.++.++++.+..........       ....+-+-|..+..    .|.++.+.-..|+..+..-
T Consensus       153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~-------k~~~~~~~~l~~~~----~~~~~~~~E~~Lr~QL~~Y  221 (309)
T PF09728_consen  153 LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKE-------KAKQEKEILLEEAA----QVQTLKETEKELREQLNLY  221 (309)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            223355666666666666666666665553222221       11112221111111    5555555555555444333


Q ss_pred             HH-------hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037185          417 MA-------EKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV  489 (533)
Q Consensus       417 ~~-------EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~  489 (533)
                      ..       =...-|....+...+|...-.+|+.+|..-..+.-.+       +.....+-++-.....+.++++..+. 
T Consensus       222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~-------e~~n~~l~~m~eer~~~~~~~~~~~~-  293 (309)
T PF09728_consen  222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW-------EKSNKALIEMAEERQKLEKELEKLKK-  293 (309)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            22       1122344445555555555555555555544444444       55555555555555555555544433 


Q ss_pred             HhhhhhHHHHHHHHHhhhh
Q 037185          490 ILDAAEEKREAIRQLCFSL  508 (533)
Q Consensus       490 i~e~aEeKREAIRQLCfsl  508 (533)
                             |.+-..-||=+|
T Consensus       294 -------k~~kLe~LcRaL  305 (309)
T PF09728_consen  294 -------KIEKLEKLCRAL  305 (309)
T ss_pred             -------HHHHHHHHHHHH
Confidence                   334444556444

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=91.34  E-value=28  Score=38.78  Aligned_cols=107  Identities=24%  Similarity=0.269  Sum_probs=67.4

Q ss_pred             HHHHHhHHhHHHHHHHHH------HHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHH----HHHHH
Q 037185          411 LKYDMLMAEKDEINAKVN------TLMAEAR----SRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDE----LRFRV  476 (533)
Q Consensus       411 ~k~e~L~~EK~~l~~kv~------~L~ad~~----sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~e----L~~rv  476 (533)
                      -++|-|..||+-|..|++      ++++||.    --.+.-..|-.|+.-|+-|.-.|-+.-..|.+.-.+    ++..-
T Consensus       208 KrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee  287 (552)
T KOG2129|consen  208 KRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE  287 (552)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888888876      5777776    334445567788888877766665555555444433    33333


Q ss_pred             HHHHHHH-HHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185          477 KELENEV-DRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF  522 (533)
Q Consensus       477 ~eLE~Ev-e~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~  522 (533)
                      ...++|. ..||..|-+.  |||||   ||=-|.--++.-+.+...|
T Consensus       288 ~~~reen~rlQrkL~~e~--erRea---lcr~lsEsesslemdeery  329 (552)
T KOG2129|consen  288 VDHREENERLQRKLINEL--ERREA---LCRMLSESESSLEMDEERY  329 (552)
T ss_pred             hhHHHHHHHHHHHHHHHH--HHHHH---HHHHhhhhhHHHHHHHHHH
Confidence            3333343 4577776554  78998   5777777777766665544

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.28  E-value=23  Score=37.72  Aligned_cols=140  Identities=20%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHH--------hhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 037185          285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAE--------EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKAL  356 (533)
Q Consensus       285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAe--------eK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~l  356 (533)
                      ++..|+..+..|+..|.+....|+=|+..+++..        ..|+.|++.+=..+-++.+.+.+|+.-|..       +
T Consensus        80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs-------~  152 (319)
T PF09789_consen   80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS-------L  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            3455555555555555555555655655555432        244566666666666666666655555555       5


Q ss_pred             HHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185          357 EDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       357 EdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~  435 (533)
                      -|+...+-+|.-....    .-.-|..|++.+--.-..+=-.|.+|--.---|+.++..+-.|++.+..-|...++-+.
T Consensus       153 lDEkeEl~~ERD~yk~----K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  153 LDEKEELVTERDAYKC----KAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444332221    33345555553222111122235555333344566788889999999999998888665

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=91.08  E-value=23  Score=37.50  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=42.2

Q ss_pred             HHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185          295 KVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI  370 (533)
Q Consensus       295 ~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~  370 (533)
                      +|..+|.+-.+...--+..+.|.+..|.-==..|+++--   ...-.|+++-+++-..|..|-+.+=+++.||+|-
T Consensus       232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~LkEr~~qyEkEKaER  304 (305)
T PF14915_consen  232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESE---KQVLLLEERNKELINECNHLKERLYQYEKEKAER  304 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            334444444444433334444554444322223333211   1223388888888889999999999999999873

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=91.01  E-value=46  Score=40.75  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             chhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 037185          372 GLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSR  437 (533)
Q Consensus       372 ~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sR  437 (533)
                      -+..+++..|+.|-..++..+...+......|+-.+-++.+.|.+..+...+..++..|-.-++.|
T Consensus       169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k  234 (1109)
T PRK10929        169 PLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ  234 (1109)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667777777777777777777777666666666667777777777766666666665555554

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.93  E-value=23  Score=37.17  Aligned_cols=130  Identities=21%  Similarity=0.239  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      +|+...|++.+++.++|+.--.          .-.....+|+.+..+|++       |+..+|...-|.--.|..--++|
T Consensus        34 eEl~EFQegSrE~EaelesqL~----------q~etrnrdl~t~nqrl~~-------E~e~~Kek~e~q~~q~y~q~s~L   96 (333)
T KOG1853|consen   34 EELNEFQEGSREIEAELESQLD----------QLETRNRDLETRNQRLTT-------EQERNKEKQEDQRVQFYQQESQL   96 (333)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455666666555543222          222333344444444444       23333444444444444444555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHH---HHHHHhhhhhHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQ---LKVEVCERDNRIEAL  402 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~---Lk~El~~~~~~Ie~L  402 (533)
                      .-+++.+-.-..+|...+++       ||.----|+..|.-...++..-++.|.++||.   |-.|+++++--.+.+
T Consensus        97 eddlsqt~aikeql~kyiRe-------LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv  166 (333)
T KOG1853|consen   97 EDDLSQTHAIKEQLRKYIRE-------LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV  166 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            55555555555566666665       44444444555554445555666777777774   666666665555444

>PRK10869 recombination and repair protein; Provisional

Probab=90.60  E-value=33  Score=38.41  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHH
Q 037185          406 MDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFR-VKELENEVD  484 (533)
Q Consensus       406 id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~r-v~eLE~Eve  484 (533)
                      |..|+.||-.--.+.-...+++..=+..+...+..+..|+.++.+++       .....+...++..|.+ +..|++.|.
T Consensus       308 l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~-------~~l~~~A~~LS~~R~~aA~~l~~~v~  380 (553)
T PRK10869        308 QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHH-------QQALETAQKLHQSRQRYAKELAQLIT  380 (553)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556665432222222222332223444555555555555555554       3334444556666655 566777764


Q ss_pred             H
Q 037185          485 R  485 (533)
Q Consensus       485 ~  485 (533)
                      .
T Consensus       381 ~  381 (553)
T PRK10869        381 E  381 (553)
T ss_pred             H
Confidence            4

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.57  E-value=43  Score=39.72  Aligned_cols=207  Identities=21%  Similarity=0.242  Sum_probs=113.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 037185          168 EELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFE  247 (533)
Q Consensus       168 ~~L~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s  247 (533)
                      +.+..||...-.|++...+.++++.+        +.++        +....++.+...+|-.||+.+++|--+.+.+.++
T Consensus       633 ~~~~~~i~~~q~e~~klqeq~~Al~~--------i~~~--------~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~  696 (1104)
T COG4913         633 DFYMIKIMRQQGEYIKLQEQANALAH--------IQAL--------NFASIDLPSAQRQIAELQARLERLTHTQSDIAIA  696 (1104)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHH--------HHhc--------chhhcchhhHHHHHHHHHHHHHHhcCChhHHHHH
Confidence            35667777777777766666666432        2222        3333445555666666665555555444444444


Q ss_pred             HHHHHHHHHhhhhh----------HHHHHhhhhhHHHHhhhhHH--------------------------------HHHH
Q 037185          248 IERLMKELEGTHQL----------QGQLKLAQDDVTTLNAKLDY--------------------------------ERMQ  285 (533)
Q Consensus       248 ~~ei~kl~E~ik~L----------Q~~Le~~q~e~a~~k~Kle~--------------------------------e~~e  285 (533)
                      .......+-.-+-|          ++.+++.++-+++.-+|+.+                                +..+
T Consensus       697 ~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~  776 (1104)
T COG4913         697 KAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIERIE  776 (1104)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhhHHHHH
Confidence            33333222211111          23333333333333333221                                1111


Q ss_pred             -HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHH
Q 037185          286 -VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDA----RLKEWELQGKALEDKI  360 (533)
Q Consensus       286 -v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~----kL~e~e~~~~~lEdei  360 (533)
                       -..||.||.-..+.|.-+.++|=   ..|+++-..+.-+-+-+.+|...+=|-...|..    .|-+       .+...
T Consensus       777 ~r~~LqkrIDa~na~Lrrl~~~Ii---g~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpe-------f~arF  846 (1104)
T COG4913         777 HRRQLQKRIDAVNARLRRLREEII---GRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPE-------FLARF  846 (1104)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHH-------HHHHH
Confidence             23567777766666666666654   479999999999999999999999998888764    3444       33333


Q ss_pred             HHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       361 rqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                      +.+-++..-         .++-.=-..|..+-..-+.+|+.+|+++...
T Consensus       847 ~~llN~~S~---------~~v~q~~~~L~~er~~IeERIe~IN~SL~~v  886 (1104)
T COG4913         847 QELLNRSSD---------DGVTQLLSHLDHERALIEERIEAINDSLRRV  886 (1104)
T ss_pred             HHHhhhccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333332111         0111111245566666677899999877654

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.51  E-value=11  Score=37.99  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          164 NETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       164 ~~~~~~L~~RiielEdELreaneKL~~sEEe~~rlk  199 (533)
                      .+...+|-.|+..++++.+.++..|..+++.+..|-
T Consensus         4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Le   39 (246)
T PF00769_consen    4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELE   39 (246)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344458889999999999999999999999988874

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=90.51  E-value=2.8  Score=43.93  Aligned_cols=83  Identities=27%  Similarity=0.424  Sum_probs=54.2

Q ss_pred             hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHhHHHHhhhhchhh
Q 037185          297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW-ELQGKALEDKIRQCETEKMEITGLHE  375 (533)
Q Consensus       297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~-e~~~~~lEdeirqleaEK~E~~~~~~  375 (533)
                      ...|.+||.||.+||..|+-                  ++|          .| |++|--+|+++.--+|- .|+.    
T Consensus        81 ~~~l~dRetEI~eLksQL~R------------------MrE----------DWIEEECHRVEAQLALKEAR-kEIk----  127 (305)
T PF15290_consen   81 ENRLHDRETEIDELKSQLAR------------------MRE----------DWIEEECHRVEAQLALKEAR-KEIK----  127 (305)
T ss_pred             HHHHHhhHHHHHHHHHHHHH------------------HHH----------HHHHHHHHHHHHHHHHHHHH-HHHH----
Confidence            33467799999999888772                  222          24 56777788877655552 2322    


Q ss_pred             HhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185          376 AQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDML  416 (533)
Q Consensus       376 ~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L  416 (533)
                          -|+.-|+-++.-|.++.+-|..-+.+|.--..|++.|
T Consensus       128 ----QLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL  164 (305)
T PF15290_consen  128 ----QLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL  164 (305)
T ss_pred             ----HHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence                4677777777777777777777766666555555543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.37  E-value=2.7  Score=41.63  Aligned_cols=50  Identities=16%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185          385 INQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA  434 (533)
Q Consensus       385 ie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~  434 (533)
                      ...+...+.++...|..|+..-+.|+.++..+.+|.+.++++++++..++
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555566677777777778888888888888877777776665544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.28  E-value=5  Score=40.52  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=18.2

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEK  420 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK  420 (533)
                      +..|++.|..|...+-.++-..|++|..|..-+..+.+|+
T Consensus        37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er   76 (230)
T PF10146_consen   37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER   76 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444555555444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.24  E-value=20  Score=35.25  Aligned_cols=25  Identities=12%  Similarity=0.199  Sum_probs=11.9

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhHHHH
Q 037185          171 LGRVIQYEDKLRVLNLSLQLSEEEV  195 (533)
Q Consensus       171 ~~RiielEdELreaneKL~~sEEe~  195 (533)
                      ..|+..+-.+|..+....+.+..++
T Consensus        19 ~~~L~~~~~~l~~~~~~~~~l~~~i   43 (302)
T PF10186_consen   19 NNRLLELRSELQQLKEENEELRRRI   43 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555554444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.15  E-value=12  Score=35.36  Aligned_cols=24  Identities=17%  Similarity=0.386  Sum_probs=9.6

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELKI  312 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~  312 (533)
                      ++..+...+..+..+++++.++..
T Consensus        79 ~~~e~~~~~~~l~~l~~el~~l~~  102 (191)
T PF04156_consen   79 LQGELSELQQQLQQLQEELDQLQE  102 (191)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=90.09  E-value=22  Score=35.46  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=10.3

Q ss_pred             HHHhhhhhHHHHHHHHHHHHH
Q 037185          390 VEVCERDNRIEALNKIMDSLK  410 (533)
Q Consensus       390 ~El~~~~~~Ie~LNk~id~Lk  410 (533)
                      .|...++..+..|...|+.++
T Consensus       168 ~Ek~~Re~~~~~l~~~le~~~  188 (247)
T PF06705_consen  168 KEKNTRESKLSELRSELEEVK  188 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.00  E-value=12  Score=34.39  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=12.0

Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKL  279 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl  279 (533)
                      +.++...+..|+.+++.++.+++.+.++.
T Consensus        68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~   96 (151)
T PF11559_consen   68 IERLQNDVERLKEQLEELERELASAEEKE   96 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.95  E-value=16  Score=34.37  Aligned_cols=12  Identities=33%  Similarity=0.620  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHHH
Q 037185          398 RIEALNKIMDSL  409 (533)
Q Consensus       398 ~Ie~LNk~id~L  409 (533)
                      .+.++...+..+
T Consensus       103 ~~~~~~~~l~~~  114 (191)
T PF04156_consen  103 RIQELESELEKL  114 (191)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=89.93  E-value=28  Score=39.36  Aligned_cols=73  Identities=23%  Similarity=0.263  Sum_probs=37.6

Q ss_pred             hhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHhHHHHhhhhchhhHh
Q 037185          302 DRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK----EWELQGKALEDKIRQCETEKMEITGLHEAQ  377 (533)
Q Consensus       302 ~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~----e~e~~~~~lEdeirqleaEK~E~~~~~~~q  377 (533)
                      ....|.+.|-.-+.-+++    +|..+..++..+...+.+|++.|.    .||.|.+.+-+.+-.+..           +
T Consensus       438 ~f~~Ec~aL~~rL~~aE~----ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNe-----------q  502 (518)
T PF10212_consen  438 HFYAECRALQKRLESAEK----EKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNE-----------Q  502 (518)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------H
Confidence            333444444444444433    455666666666666666666665    333333333333333333           4


Q ss_pred             hhhhhhHHHHHH
Q 037185          378 ERGMQSEINQLK  389 (533)
Q Consensus       378 ~~~L~gEie~Lk  389 (533)
                      ...-.++|+.||
T Consensus       503 L~~Q~eeI~~LK  514 (518)
T PF10212_consen  503 LAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHh
Confidence            445556666666

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=89.89  E-value=37  Score=37.85  Aligned_cols=39  Identities=21%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             hHHhhhhHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhh
Q 037185          160 TEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARL  198 (533)
Q Consensus       160 ~e~~~~~~~~L~~RiielEdELreaneKL~~sEEe~~rl  198 (533)
                      .++......-|.+|-..+-.||-..+.|-.+..++|.-+
T Consensus        45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l   83 (552)
T KOG2129|consen   45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPL   83 (552)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchh
Confidence            345666677888888888899999999999888887765

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=89.71  E-value=39  Score=37.82  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc--hhHhhhhHHHHHH-----------HHHHHHHHHHHHH
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFT--LDKAQLQSEMFCL-----------LEKQALLDARLKE  348 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s--~EKa~l~aEiskL-----------~E~~~~Le~kL~e  348 (533)
                      -+-++|||....|-+.=.....-|.+.|.+-+-|--|=-  -=-..|-|||+-|           -.+|.+|..+|+.
T Consensus       344 EqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrD  421 (488)
T PF06548_consen  344 EQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRD  421 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            457888998888877666667778888888776644321  0013455666555           4588888888884

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.46  E-value=7  Score=39.48  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185          387 QLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH  455 (533)
Q Consensus       387 ~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~  455 (533)
                      +++.+|...-+.++.-.+-|.+++.+.+.|..|+...-+.+...-+|+++-+.-|++.+..-++..-..
T Consensus        15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen   15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444555566666666667777766666666666666665555555554444443333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.43  E-value=56  Score=39.27  Aligned_cols=163  Identities=13%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             HHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHH
Q 037185          262 QGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQAL  341 (533)
Q Consensus       262 Q~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~  341 (533)
                      |.-++.+.+.+.+|.+++++-+.-..+|-.-.+.|..+..+......--.+.+-|+++    ++.+|---+.+++.+-..
T Consensus       409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~----~~~~L~d~le~~~~~~~~  484 (980)
T KOG0980|consen  409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE----ENTNLNDQLEELQRAAGR  484 (980)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            3335666677788888888888777777777777766666554444333333333222    233333333333333333


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHH
Q 037185          342 LDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKD  421 (533)
Q Consensus       342 Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~  421 (533)
                      ++.|.++       ..+.+..+..|++           .|.++++.|+..+..       +-+.=......++.+..+||
T Consensus       485 ~~~K~e~-------~~~~le~l~~El~-----------~l~~e~~~lq~~~~~-------~~qs~~~~~~~l~~~l~~KD  539 (980)
T KOG0980|consen  485 AETKTES-------QAKALESLRQELA-----------LLLIELEELQRTLSN-------LAQSHNNQLAQLEDLLKQKD  539 (980)
T ss_pred             HHHhhHH-------HHHHHHHHHHHHH-----------HHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHhhH
Confidence            3333333       6666666666544           455566666554221       11122222223333334443


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 037185          422 EINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHA  456 (533)
Q Consensus       422 ~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~  456 (533)
                      .+-+.+   ..+--.|.+.+.+.++-++||.+.+.
T Consensus       540 ~~~~~~---~~~~~e~~~~~~e~e~si~ql~l~~~  571 (980)
T KOG0980|consen  540 RLAAEL---VAREEEREALRLEAERSINQLELDSS  571 (980)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHhhHHHhhcccc
Confidence            332221   22223344466777777788877763

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.24  E-value=26  Score=39.67  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 037185          377 QERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHA  456 (533)
Q Consensus       377 q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~  456 (533)
                      |-+-++.+|++...++..--.++..|--.|.+++-|+-++.-||.++.+    ++-.+.+++++   |...++.+.=.-|
T Consensus       213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~----~Lq~~~da~~q---l~aE~~EleDkyA  285 (596)
T KOG4360|consen  213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE----HLQAYKDAQRQ---LTAELEELEDKYA  285 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHhhHHH---HHHHHHHHHHHHH
Confidence            4445555666666666555566666666666666666666666644433    23344444443   3444555555566


Q ss_pred             HHHHhhHhHHHHHHHHH
Q 037185          457 ELIAASESSRKLVDELR  473 (533)
Q Consensus       457 ~l~~~~~~~~~~v~eL~  473 (533)
                      ++++...++...+..||
T Consensus       286 E~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  286 ECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            66666655555555554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.94  E-value=19  Score=33.15  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185          285 QVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       285 ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK  320 (533)
                      .--.|.+++..+..+...+.+.+..|+..+..++.+
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666666666666666666666666654444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.93  E-value=49  Score=37.95  Aligned_cols=104  Identities=15%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhc---hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFT---LDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s---~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      -+|.|-.++-...++-.-|..|..+++|++....   -+=++|.|-+.++.-+...|+--|+.--+.|.-+|.++++.+.
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~  408 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN  408 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666655432   2335777778788777777877777777888889999988876


Q ss_pred             HHhhh--hchhhHhhhhhhhHHHHHHHHH
Q 037185          366 EKMEI--TGLHEAQERGMQSEINQLKVEV  392 (533)
Q Consensus       366 EK~E~--~~~~~~q~~~L~gEie~Lk~El  392 (533)
                      ---++  .-=.+.+.+.|-++++-.+.+.
T Consensus       409 ~~ddar~~pe~~d~i~~le~e~~~y~de~  437 (654)
T KOG4809|consen  409 IEDDARMNPEFADQIKQLEKEASYYRDEC  437 (654)
T ss_pred             hhHhhhcChhhHHHHHHHHHHHHHHHHHH
Confidence            33221  1112335556666666555544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.72  E-value=7.4  Score=44.49  Aligned_cols=11  Identities=45%  Similarity=0.489  Sum_probs=5.3

Q ss_pred             HHHHHhhHHhh
Q 037185          310 LKIALSDAEEK  320 (533)
Q Consensus       310 LK~~lsDAeeK  320 (533)
                      |.++++.+.++
T Consensus       390 l~eal~~~~e~  400 (652)
T COG2433         390 LAEALSKVKEE  400 (652)
T ss_pred             HHHHHHHHHhh
Confidence            44555544444

>TIGR02977 phageshock_pspA phage shock protein A

Probab=88.58  E-value=26  Score=34.43  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=52.6

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIA  460 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~  460 (533)
                      ....+..|...+......|..|...|..|+.+++...+-++.+.+++.+..+-.+.  +.+               --..
T Consensus        97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~--~~~---------------~~~~  159 (219)
T TIGR02977        97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV--RRQ---------------LDSG  159 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---------------HhCC
Confidence            34455566666666677777777777777777777777777676666544332111  111               0012


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          461 ASESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       461 ~~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      .++++...+..+..||..+|-+.+-.
T Consensus       160 ~~~~a~~~fer~e~ki~~~ea~aea~  185 (219)
T TIGR02977       160 RSDEAMARFEQYERRVDELEAQAESY  185 (219)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            23455666667777777777665543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=88.54  E-value=0.64  Score=49.12  Aligned_cols=70  Identities=11%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 037185          381 MQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRK  450 (533)
Q Consensus       381 L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~q  450 (533)
                      |.+.|..|...+......|..|...+.++..-+..|....+.+.-.|.||+.+|.+--=.|..|+..+..
T Consensus        82 LsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~  151 (326)
T PF04582_consen   82 LSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA  151 (326)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence            4445555555555556666666666666666666666666777777777777777666555444444433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.32  E-value=39  Score=36.02  Aligned_cols=200  Identities=20%  Similarity=0.246  Sum_probs=100.4

Q ss_pred             HHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh-hhhHHHHHHHHHHhhHHhhhch----hHh
Q 037185          252 MKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS-DRNNEVAELKIALSDAEEKFTL----DKA  326 (533)
Q Consensus       252 ~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls-~~d~EIr~LK~~lsDAeeK~s~----EKa  326 (533)
                      ..|+.+++.|..+|+.....+..+...+..-+...+.+|.+.-.-+.-++ .+-..|..|+..-.+.--+.-.    -=-
T Consensus        30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn  109 (310)
T PF09755_consen   30 ESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTN  109 (310)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555544444444444444444444444444443333333 2333344443332222111111    113


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKE-WELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKI  405 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e-~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~  405 (533)
                      .|+.-+.+|..+...|+..|.. -+..+.-|--+|..+++++           ..++.+.++|..|+.+.+.-++.=.-.
T Consensus       110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~-----------~~~q~~le~Lr~EKVdlEn~LE~EQE~  178 (310)
T PF09755_consen  110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEK-----------SAKQEELERLRREKVDLENTLEQEQEA  178 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5666777777777777777763 3344444555555554433           234556667777777766666543322


Q ss_pred             -HHHHHHHHHHhHHhHHHHHHHHHHHHHH-hhhh--------hhhhhhHHHHHHHHHHHHHHHHHhh
Q 037185          406 -MDSLKLKYDMLMAEKDEINAKVNTLMAE-ARSR--------DNHIGQIEEHSRKLHMEHAELIAAS  462 (533)
Q Consensus       406 -id~Lk~k~e~L~~EK~~l~~kv~~L~ad-~~sR--------d~~I~qme~hl~qL~~e~~~l~~~~  462 (533)
                       +-.|--+.+-|.+||..+..++..=..+ ..-|        ......+..|+..|+-|-+.|-...
T Consensus       179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL  245 (310)
T PF09755_consen  179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL  245 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence             2234445677777888888777542221 1112        2233456666666665554444433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.02  E-value=20  Score=40.03  Aligned_cols=107  Identities=23%  Similarity=0.278  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 037185          405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVD  484 (533)
Q Consensus       405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve  484 (533)
                      .+..++..++.+..|++.+......+.+....-..++.|+...+..+.-+--.+--....+.+-..-.+.+++++++.-.
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~  427 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK  427 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555544444444444444444444444322211111112222222333444444444433


Q ss_pred             HHHHHHhhhhhHHHHHHHHHhhhhHhh
Q 037185          485 RQRMVILDAAEEKREAIRQLCFSLEHY  511 (533)
Q Consensus       485 ~Q~~~i~e~aEeKREAIRQLCfslehy  511 (533)
                      +++..--+.-.+=-|-+|.|=|-||..
T Consensus       428 ~~~~s~d~~I~dLqEQlrDlmf~le~q  454 (493)
T KOG0804|consen  428 EALGSKDEKITDLQEQLRDLMFFLEAQ  454 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhHheehhhh
Confidence            333322222223345688898988754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.87  E-value=41  Score=39.17  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhhchhhhhHHHHHHH
Q 037185          288 KFQERIAKVETNLSDRNNEVAELK  311 (533)
Q Consensus       288 kLqeri~~lkt~Ls~~d~EIr~LK  311 (533)
                      .++.|++.++...+.--.++.+|+
T Consensus       562 ei~~rv~~Lk~~~e~Ql~~L~~l~  585 (717)
T PF10168_consen  562 EIQRRVKLLKQQKEQQLKELQELQ  585 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555554444444444433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=87.84  E-value=56  Score=37.33  Aligned_cols=30  Identities=10%  Similarity=0.190  Sum_probs=17.9

Q ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 037185          453 MEHAELIAASESSRKLVDELRFRVKELENE  482 (533)
Q Consensus       453 ~e~~~l~~~~~~~~~~v~eL~~rv~eLE~E  482 (533)
                      .+...|--+.+.+.+...-|-.|..+..-.
T Consensus       376 ~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~  405 (754)
T TIGR01005       376 VDLDALQRDAAAKRQLYESYLTNYRQAASR  405 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444455566666777776666666544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR00634 recN DNA repair protein RecN

Probab=87.67  E-value=51  Score=36.69  Aligned_cols=56  Identities=29%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185          394 ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL  458 (533)
Q Consensus       394 ~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l  458 (533)
                      .....++.|.+.++.++.++..+..+.+....+++.-++         +.+..+|..|-|.++.+
T Consensus       343 ~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~---------~~v~~~l~~L~m~~~~f  398 (563)
T TIGR00634       343 DSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA---------KRVEQELKALAMEKAEF  398 (563)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhCCCCCcEE
Confidence            344466666666666666666665555555444332222         23456777777776554

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=87.62  E-value=38  Score=35.15  Aligned_cols=51  Identities=18%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHH----HHHHHHHHHHHHHhhc
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYER----MQVLKFQERIAKVETN  299 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~----~ev~kLqeri~~lkt~  299 (533)
                      .++..|+.....|.+.+.++++++..+.+=-+.|-    .+++.|..-|..++++
T Consensus        81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~  135 (258)
T PF15397_consen   81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS  135 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777888888888888777766554    4555555555555543

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=87.47  E-value=78  Score=38.62  Aligned_cols=53  Identities=11%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEA-LNKIMDSLKLKYDMLMAEKDEINAKVNTLMA  432 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~-LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~a  432 (533)
                      .++..++.++.++...-..|.. ....+..+...++..+.+-+.+-..++.-+.
T Consensus       636 ~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~  689 (1041)
T KOG0243|consen  636 SLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS  689 (1041)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666655554444444 4456666666666666666666666554444

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=87.33  E-value=71  Score=37.97  Aligned_cols=139  Identities=19%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhch
Q 037185          224 RRQVFELQNYVRELETRLSE---SNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNL  300 (533)
Q Consensus       224 e~ei~~LQ~~v~ELE~~~~~---l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~L  300 (533)
                      +.++..|--|++|-|.+...   .+++ =|+..|+--+..||.+|....+....+.+|-+.-.+       .|...+..-
T Consensus       400 rRrLrilnqqlreqe~~~k~~~~~~~n-~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk-------~~e~q~~En  471 (861)
T PF15254_consen  400 RRRLRILNQQLREQEKAEKTSGSQDCN-LELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLK-------VIENQKEEN  471 (861)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCcccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-------HHHHHHHHH
Confidence            34455554556665554422   2222 357778888888888888777766666655432222       222222222


Q ss_pred             hhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185          301 SDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI  370 (533)
Q Consensus       301 s~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~  370 (533)
                      -.+-..+.+=.+.+-..-+.|..|-+.++-|+...+-...++.-+|+..|-+-..|---+||=.||..-+
T Consensus       472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL  541 (861)
T PF15254_consen  472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERL  541 (861)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence            2222223333444455556677777788888888888888888888887777777777777766644433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.08  E-value=39  Score=36.64  Aligned_cols=76  Identities=17%  Similarity=0.070  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185          332 MFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKL  411 (533)
Q Consensus       332 iskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~  411 (533)
                      -.+|.....+..+=+-.--.+.+-+|.-++++..|+.-.+.    |...++.++       .+++.+-..||+.++....
T Consensus       108 nqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql----qL~~l~~e~-------~Ekeeesq~LnrELaE~la  176 (401)
T PF06785_consen  108 NQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL----QLDALQQEC-------GEKEEESQTLNRELAEALA  176 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH-------hHhHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444466666666666665544    333333333       3334445555555555544


Q ss_pred             HHHHhHH
Q 037185          412 KYDMLMA  418 (533)
Q Consensus       412 k~e~L~~  418 (533)
                      -.-.|..
T Consensus       177 yqq~L~~  183 (401)
T PF06785_consen  177 YQQELND  183 (401)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.87  E-value=56  Score=36.31  Aligned_cols=142  Identities=20%  Similarity=0.302  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 037185          277 AKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWE------  350 (533)
Q Consensus       277 ~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e------  350 (533)
                      .++++.+=.|.-|++-+.+|+++.-+.=.....+...+.|.-+|   +|+.    |-.|.+....|++++....      
T Consensus       216 k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k---~k~~----~~~l~~K~~iL~ekv~~~qti~~e~  288 (446)
T KOG4438|consen  216 KILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQK---EKSA----MVELQEKAKILEEKVTNLQTIEKEL  288 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            34555566666777777767766654444444444444444444   2222    2233333333333332110      


Q ss_pred             ------------------------hhhhhHHHH--HHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Q 037185          351 ------------------------LQGKALEDK--IRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNK  404 (533)
Q Consensus       351 ------------------------~~~~~lEde--irqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk  404 (533)
                                              .+..-+|++  +.+++.+++-+.+-|--|...++-+-+...-+...+  .-+.+-+
T Consensus       289 ~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~  366 (446)
T KOG4438|consen  289 KALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENR--KTESVKA  366 (446)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence                                    011112222  234444444444434444444444444444333222  2266666


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHH
Q 037185          405 IMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       405 ~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      -+|..+.++...+.+.+...-+|
T Consensus       367 ~md~~~~~~n~V~~kr~a~~~ki  389 (446)
T KOG4438|consen  367 MMDDNIEKYNVVRQKRNAKVKKI  389 (446)
T ss_pred             HHHHHHHHhcccchhhccHHHHH
Confidence            67777777766666666655555

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.76  E-value=15  Score=37.20  Aligned_cols=18  Identities=33%  Similarity=0.372  Sum_probs=11.6

Q ss_pred             HhhhhhHHHHHHHHcCCC
Q 037185          509 EHYRSGYQELRQAFLGYK  526 (533)
Q Consensus       509 ehyr~~y~~L~~~~~GhK  526 (533)
                      -+=|+.|+.||++=+|++
T Consensus       219 ~~g~~ky~tl~~i~~g~t  236 (246)
T PF00769_consen  219 RAGRDKYKTLRQIRQGNT  236 (246)
T ss_dssp             HTT--HHHHHHHHT-S-H
T ss_pred             HhchhHHHHHHHHhcCCH
Confidence            456899999999999973

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.62  E-value=8.4  Score=40.42  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             HHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhh
Q 037185          361 RQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNH  440 (533)
Q Consensus       361 rqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~  440 (533)
                      .||.+||.-+-=    |--.|+..++-|-+.++...+.+...++.+..+|..++.|..|.+.       |...+..||.-
T Consensus       101 aQLDNek~~l~y----qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~-------Lre~L~~rdel  169 (302)
T PF09738_consen  101 AQLDNEKSALMY----QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE-------LREQLKQRDEL  169 (302)
T ss_pred             hhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            455666664431    2222344444444444444444444445555555555555555544       44455777766


Q ss_pred             h
Q 037185          441 I  441 (533)
Q Consensus       441 I  441 (533)
                      |
T Consensus       170 i  170 (302)
T PF09738_consen  170 I  170 (302)
T ss_pred             H
Confidence            6

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.07  E-value=6.3  Score=36.94  Aligned_cols=35  Identities=23%  Similarity=0.199  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      ++..|..++..|..++.++...++.++.+++.+.+
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~  107 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS  107 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45556666666666666644444446666666655

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.85  E-value=9.6  Score=37.43  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=16.7

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHh
Q 037185          391 EVCERDNRIEALNKIMDSLKLKYDML  416 (533)
Q Consensus       391 El~~~~~~Ie~LNk~id~Lk~k~e~L  416 (533)
                      ++...+.+++++|+.+.+++.+....
T Consensus       160 ei~~lks~~~~l~~~~~~~e~~F~~~  185 (190)
T PF05266_consen  160 EISRLKSEAEALKEEIENAELEFQSV  185 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444447777777887777776543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.81  E-value=7.8  Score=44.32  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=68.2

Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 037185          270 DDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEW  349 (533)
Q Consensus       270 ~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~  349 (533)
                      -++..+.+.+.+-...|.+|++.+..|+..+...+.+|..|+..+..+..+.- .|....-||..+..++..|+.+|.+-
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~  493 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEK  493 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555666777777777777777788888888888888877776 67777888999999999999999885


Q ss_pred             HhhhhhHHHHHHHhH
Q 037185          350 ELQGKALEDKIRQCE  364 (533)
Q Consensus       350 e~~~~~lEdeirqle  364 (533)
                      ......|+.++.++.
T Consensus       494 ~~~ve~L~~~l~~l~  508 (652)
T COG2433         494 KKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555444

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=85.43  E-value=4  Score=40.35  Aligned_cols=65  Identities=25%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL  402 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L  402 (533)
                      .+|+..|-+++..|.+++.++--.|+++|++||.|...-.  -       -+||.+|..|+.+.....++|..+
T Consensus        78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt--~-------eemQe~i~~L~kev~~~~erl~~~  142 (201)
T KOG4603|consen   78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT--T-------EEMQEEIQELKKEVAGYRERLKNI  142 (201)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--h-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677888899999999999999999999999999987221  1       257777887777776666666554

>PF15294 Leu_zip: Leucine zipper

Probab=85.00  E-value=54  Score=34.43  Aligned_cols=87  Identities=23%  Similarity=0.241  Sum_probs=62.9

Q ss_pred             hhchhHhh-----hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185          320 KFTLDKAQ-----LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE  394 (533)
Q Consensus       320 K~s~EKa~-----l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~  394 (533)
                      |+-|+.-.     +..||.+|+++|..|.++|..++.+|-..=++...+++.-.++..        .+|.+. -+..+..
T Consensus       117 KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--------~~~~~~-~k~~~~~  187 (278)
T PF15294_consen  117 KLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--------EQGDQK-GKKDLSF  187 (278)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh-ccccccc
Confidence            45566656     899999999999999999999888888887777777775444431        222222 2234456


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 037185          395 RDNRIEALNKIMDSLKLKYDM  415 (533)
Q Consensus       395 ~~~~Ie~LNk~id~Lk~k~e~  415 (533)
                      ....|..|...++.+|.+++-
T Consensus       188 ~~q~l~dLE~k~a~lK~e~ek  208 (278)
T PF15294_consen  188 KAQDLSDLENKMAALKSELEK  208 (278)
T ss_pred             cccchhhHHHHHHHHHHHHHH
Confidence            777888888888888877653

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=84.71  E-value=15  Score=34.09  Aligned_cols=106  Identities=20%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhH-hhhhhhhHHH---HHHHHHhhhhhHHHHHH
Q 037185          328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEA-QERGMQSEIN---QLKVEVCERDNRIEALN  403 (533)
Q Consensus       328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~-q~~~L~gEie---~Lk~El~~~~~~Ie~LN  403 (533)
                      +-.++..+...-..|..+|..+-.++.-+|.+++.++....|.+.|-+- .--...|.+=   ...+=+.+.+.+++.|+
T Consensus         4 lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le   83 (119)
T COG1382           4 LPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLE   83 (119)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHH
Confidence            3456666677777788888888888888999999998888888775432 2222233221   01111223344455555


Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037185          404 KIMDSLKLKYDMLMAEKDEINAKVNTLMAE  433 (533)
Q Consensus       404 k~id~Lk~k~e~L~~EK~~l~~kv~~L~ad  433 (533)
                      ..|..|...-+.+.++...+.+.|...+.+
T Consensus        84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~  113 (119)
T COG1382          84 LRIKTLEKQEEKLQERLEELQSEIQKALGD  113 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555555555555555555566666555443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=84.58  E-value=78  Score=35.92  Aligned_cols=46  Identities=20%  Similarity=0.249  Sum_probs=38.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhh
Q 037185          325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEI  370 (533)
Q Consensus       325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~  370 (533)
                      |..-...|..|.......+.|..-+..+|+.|-..+...+.+|.-+
T Consensus       415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l  460 (518)
T PF10212_consen  415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL  460 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666788999999999999999999999999988888877766543

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.39  E-value=26  Score=35.14  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 037185          384 EINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAEL  458 (533)
Q Consensus       384 Eie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l  458 (533)
                      ||=.|+..+-+........+..+..|+..+..=..|.....+.+...+.++.--.++++.++..+..|+-..+.+
T Consensus        32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            333344444444444444444444443333333334444445555555555555556666666666666555554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR00634 recN DNA repair protein RecN

Probab=83.88  E-value=77  Score=35.31  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=9.6

Q ss_pred             HhHHHHHHHHHHH-HHHHHHHHH
Q 037185          463 ESSRKLVDELRFR-VKELENEVD  484 (533)
Q Consensus       463 ~~~~~~v~eL~~r-v~eLE~Eve  484 (533)
                      ..+...++..|.+ +..|++.|.
T Consensus       363 ~~~a~~Ls~~R~~~a~~l~~~v~  385 (563)
T TIGR00634       363 DKAAVALSLIRRKAAERLAKRVE  385 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555433 344555443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.54  E-value=17  Score=36.11  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 037185          397 NRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH  455 (533)
Q Consensus       397 ~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~  455 (533)
                      ..+..|++.++.++.+++.+..+-+...+.   +-..+..++..|.+++....+|.-+.
T Consensus        93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~---l~~~~~~~~~~~~~L~~~n~~L~~~l  148 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAE---MQQKVAQSDSVINGLKEENQKLKNQL  148 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666666666655543322222   22233445666655555555554333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=83.54  E-value=41  Score=31.82  Aligned_cols=38  Identities=24%  Similarity=0.174  Sum_probs=25.6

Q ss_pred             hHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 037185          324 DKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIR  361 (533)
Q Consensus       324 EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeir  361 (533)
                      ..-.|..+.-+..+....|+..++.|+..+..++-.++
T Consensus       139 ~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~  176 (177)
T PF13870_consen  139 GVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK  176 (177)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34455566666777777777777777777777766554

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.34  E-value=26  Score=32.18  Aligned_cols=60  Identities=22%  Similarity=0.443  Sum_probs=40.9

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHh---hhhHHHHHHHHHHHHHHHHHHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKA---QLQSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa---~l~aEiskL~E~~~~Le~kL~e  348 (533)
                      |-.+...|.++-..+.+.|.+|...++|+...+-.+|-   .|.+..++-.-..+.|+-+|.+
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e  104 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence            55566667777777888888888888888877776664   4455556666666666655544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=83.23  E-value=25  Score=37.65  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHH
Q 037185          422 EINAKVNTLMAEARSRDNHIGQIE  445 (533)
Q Consensus       422 ~l~~kv~~L~ad~~sRd~~I~qme  445 (533)
                      .++.-|..|++|+...|-+|+=|+
T Consensus       332 ~IKqAl~kLk~EI~qMdvrIGVle  355 (359)
T PF10498_consen  332 KIKQALTKLKQEIKQMDVRIGVLE  355 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheeh
Confidence            345566777777777777775443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF13166 AAA_13: AAA domain

Probab=83.20  E-value=85  Score=35.27  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=18.1

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                      .++.+|..|...+...+.-+..+|+.|..+
T Consensus       442 ~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  442 KIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344455556665555566666777666666

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.08  E-value=12  Score=35.14  Aligned_cols=38  Identities=18%  Similarity=0.307  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185          398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~  435 (533)
                      ++..|+..|..|+.++..|..+...+.+.+.+|.+..+
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t  110 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT  110 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34444444444555555555555555555555544443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=82.60  E-value=41  Score=36.08  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=44.4

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh---hhhHHHHHHHHHHhhHHhhhchhHhhhhHHH
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS---DRNNEVAELKIALSDAEEKFTLDKAQLQSEM  332 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls---~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEi  332 (533)
                      -++.+|--|++-.|++---+...--..+.||-||--+|..|+..+=   ..-+-||++...++                 
T Consensus         7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~-----------------   69 (351)
T PF07058_consen    7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQ-----------------   69 (351)
T ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-----------------
Confidence            3344444444444443222222222234788899888888876543   45566776655444                 


Q ss_pred             HHHHHHHHHHHHHHHH
Q 037185          333 FCLLEKQALLDARLKE  348 (533)
Q Consensus       333 skL~E~~~~Le~kL~e  348 (533)
                       .|.|+..-|+..|..
T Consensus        70 -elneEkrtLeRELAR   84 (351)
T PF07058_consen   70 -ELNEEKRTLERELAR   84 (351)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             788888888888873

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.42  E-value=8.5  Score=31.86  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      |-.++.|+.+....+..++.+|.+-+.+-+.|+.+|..+..
T Consensus        13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~   53 (61)
T PF08826_consen   13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677888999999999999999955555555555555544

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=82.35  E-value=59  Score=32.86  Aligned_cols=31  Identities=23%  Similarity=0.186  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKL  279 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kl  279 (533)
                      .++.++-..|..|+.+|+.+|+-.+++..||
T Consensus         4 ~~va~lnrri~~leeele~aqErl~~a~~KL   34 (205)
T KOG1003|consen    4 ADVAALNRRIQLLEEELDRAQERLATALQKL   34 (205)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666666666665

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=82.35  E-value=21  Score=41.89  Aligned_cols=95  Identities=21%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHH-----------HHHHHHHHHHHhhhhhhhhh---hHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDE-----------INAKVNTLMAEARSRDNHIG---QIE  445 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~-----------l~~kv~~L~ad~~sRd~~I~---qme  445 (533)
                      .|...|++|+.|++.   ++..-- +---|+.|+++|+.|.+.           +..++.+|+.+++-|=...-   .+-
T Consensus       459 ~L~e~IeKLk~E~d~---e~S~A~-~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk  534 (762)
T PLN03229        459 ALNEMIEKLKKEIDL---EYTEAV-IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLK  534 (762)
T ss_pred             HHHHHHHHHHHHHHH---HHHHhh-hhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence            456666666665521   222221 223578899999988777           66689999999887754321   122


Q ss_pred             HHHHHHHHHH-HH-HHHhhHhHHHHHHHHHHHHHH
Q 037185          446 EHSRKLHMEH-AE-LIAASESSRKLVDELRFRVKE  478 (533)
Q Consensus       446 ~hl~qL~~e~-~~-l~~~~~~~~~~v~eL~~rv~e  478 (533)
                      ..|.-|..++ |+ |+.++..+..+=.||+.++.+
T Consensus       535 ~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e  569 (762)
T PLN03229        535 YKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKE  569 (762)
T ss_pred             HHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHH
Confidence            2333343333 22 333344455555566666665

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=82.10  E-value=43  Score=35.37  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037185          413 YDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAA-SESSRKLVDELRFRVKELENEVDRQRMVIL  491 (533)
Q Consensus       413 ~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~-~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~  491 (533)
                      +..|..+...+..++..|..-.+...-.|..+...+..|.-.....+.. ...+.+.+..++.+...|+..++.++..+.
T Consensus       256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  335 (444)
T TIGR03017       256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL  335 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777778888888888999999999999988887554333322 233445566677778888888777766665


Q ss_pred             hhhhHHHHHHHHHhhhhHhhhhhHHHHHH
Q 037185          492 DAAEEKREAIRQLCFSLEHYRSGYQELRQ  520 (533)
Q Consensus       492 e~aEeKREAIRQLCfslehyr~~y~~L~~  520 (533)
                      .....-++ .+.|=--++.-|.-|..|..
T Consensus       336 ~l~~~~~~-~~~L~r~~~~~~~~y~~ll~  363 (444)
T TIGR03017       336 ELNRQRDE-MSVLQRDVENAQRAYDAAMQ  363 (444)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            54433322 33444444555555555544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=81.97  E-value=1.1e+02  Score=35.46  Aligned_cols=105  Identities=18%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchh----------hhhHHHHHHHHH---HhhHHhhhchhHhhhhHHHHH
Q 037185          268 AQDDVTTLNAKLDYERMQVLKFQERIAKVETNLS----------DRNNEVAELKIA---LSDAEEKFTLDKAQLQSEMFC  334 (533)
Q Consensus       268 ~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls----------~~d~EIr~LK~~---lsDAeeK~s~EKa~l~aEisk  334 (533)
                      ....+..|+++++.++-...-+-+++.++...|.          +-+..+.+.+..   +++...-+..++.....+...
T Consensus       339 ~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~  418 (607)
T KOG0240|consen  339 LELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDI  418 (607)
T ss_pred             hHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHH
Confidence            3445678899988888666666666666666554          222222222222   123444444455446788888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          335 LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       335 L~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      |.+++.+|..+|-....+.........+++.++..-.+
T Consensus       419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee  456 (607)
T KOG0240|consen  419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEE  456 (607)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888887555555555555555554444333

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=81.79  E-value=56  Score=32.21  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhh
Q 037185          398 RIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHI  441 (533)
Q Consensus       398 ~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I  441 (533)
                      .|..|.+.|-.|+.....+..+|...+..|..|.+++..=+..|
T Consensus       132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~  175 (190)
T PF05266_consen  132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI  175 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555555544444444

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.34  E-value=35  Score=33.31  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHh--hhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE--KFTLDKAQLQSEMFCLLEKQALLDARLK  347 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAee--K~s~EKa~l~aEiskL~E~~~~Le~kL~  347 (533)
                      .....++.++..|...+.....+|.+|+..+.++..  .-+.|+..+-.++..|..++..|...|.
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555555432  1123344444444444444444433333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=80.95  E-value=14  Score=42.38  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhHhhhhhHHHHHHHH
Q 037185          451 LHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRSGYQELRQAF  522 (533)
Q Consensus       451 L~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLCfslehyr~~y~~L~~~~  522 (533)
                      ++.....+-...+.....+.++..+..+++++.+.-+..+......=++.|+.+.--+.-.+..|+-+....
T Consensus       213 ~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~  284 (759)
T PF01496_consen  213 FGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFA  284 (759)
T ss_dssp             TT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334444444444566778889999999999998887777776555545555555555555556666665443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=80.77  E-value=31  Score=33.71  Aligned_cols=106  Identities=17%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      ......+..+..|+.+++.+...++.++.+++..+..-..=.+|-..+.. +..+..++..|+..+. .....-|+    
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~-l~~l~~~~~~l~~el~-~~~~~Dp~----  135 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEE-LEELKKELKELKKELE-KYSENDPE----  135 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCHH----
Confidence            44444455555555555555555555555555554222222444443333 5555556666666665 23333333    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ  362 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq  362 (533)
                        .|.++.+....+-...-.|--++-.+..=++.
T Consensus       136 --~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~  167 (188)
T PF03962_consen  136 --KIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK  167 (188)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence              34456666666666666666555555555444

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.54  E-value=18  Score=30.70  Aligned_cols=64  Identities=22%  Similarity=0.278  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037185          288 KFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQ  362 (533)
Q Consensus       288 kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirq  362 (533)
                      +|+.+|..+=..++-+.-+|.+||..-.           .+..+...|.+++..|...-..|..+.+.+=.++.+
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke~n~-----------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKEKNN-----------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3444444444444455556666666544           444666677777777777777777777666555543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.52  E-value=1.4e+02  Score=36.05  Aligned_cols=77  Identities=13%  Similarity=0.035  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcchH--HHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhH-------HHHHHHHHHHHHHHH
Q 037185          225 RQVFELQNYVRELETRLSESNF--EIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLD-------YERMQVLKFQERIAK  295 (533)
Q Consensus       225 ~ei~~LQ~~v~ELE~~~~~l~~--s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle-------~e~~ev~kLqeri~~  295 (533)
                      .++..|+.++..|+...-.++.  ...+|-.+...+..++..+.....+-..-...+.       ....+..+|+.++..
T Consensus       330 ~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~  409 (913)
T KOG0244|consen  330 FEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDS  409 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHH
Confidence            3455555666666666555542  2355555666666666666655554444444332       223566777777776


Q ss_pred             Hhhchh
Q 037185          296 VETNLS  301 (533)
Q Consensus       296 lkt~Ls  301 (533)
                      +..-+.
T Consensus       410 ~~~~~~  415 (913)
T KOG0244|consen  410 CMNLLS  415 (913)
T ss_pred             HHHHHH
Confidence            665554

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.47  E-value=45  Score=33.23  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=9.4

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELK  311 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK  311 (533)
                      .|.+|..+..+-..+..+|+.|+
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~   62 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLE   62 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443333333444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=80.09  E-value=1.5e+02  Score=35.93  Aligned_cols=14  Identities=21%  Similarity=0.278  Sum_probs=9.4

Q ss_pred             HHHHHHc-CCCCCCc
Q 037185          517 ELRQAFL-GYKRPAV  530 (533)
Q Consensus       517 ~L~~~~~-GhKR~~V  530 (533)
                      .|+..|. |.-||+-
T Consensus       495 ~Lr~~L~~GePCPVC  509 (1047)
T PRK10246        495 AQRAQLQAGQPCPLC  509 (1047)
T ss_pred             HHHHhCCCCCCcCCC
Confidence            3677776 7777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.9 bits (197), Expect = 9e-16
 Identities = 53/331 (16%), Positives = 126/331 (38%), Gaps = 19/331 (5%)

Query: 160  TEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEAD 219
             EE  +  +E L R  + + K       L+    ++   K+ L  ++++        E  
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 220  LEMERRQVFELQNYVRELETRLS---ESNFEIERLMKELEGTH-QLQGQLKLAQDDVTTL 275
                  +  EL+  + E+E R+    E + +++   K+++     L+ QL+  +     L
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 276  NAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL 335
              +      ++ K ++ I  +E   +    E   L+  +SD           L  E    
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT-------NLAEEE--- 1024

Query: 336  LEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCER 395
             EK   L     + E     LE ++++ E  + E+    E  +R ++ E + L  ++ E 
Sbjct: 1025 -EKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL----EKIKRKLEGESSDLHEQIAEL 1079

Query: 396  DNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEH 455
              +I  L   +   + +    +A  ++  ++ N  + + R  ++HI  ++E         
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139

Query: 456  AELIAASESSRKLVDELRFRVKELENEVDRQ 486
             +         + ++ L+  +++  +    Q
Sbjct: 1140 NKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 45/315 (14%), Positives = 123/315 (39%), Gaps = 10/315 (3%)

Query: 192  EEEVARLKSELHSQIESAKRDVNIKEADLEMERRQ--VFELQNYVRELETRLSESNFEIE 249
            EEE     +++    ++  R    ++A  + +++   +F +Q  VR            + 
Sbjct: 784  EEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLF 843

Query: 250  RLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE 309
              +  L    + + +++   +++     +      ++ + +++  ++    +    ++  
Sbjct: 844  FXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903

Query: 310  LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME 369
                 ++AEE      A+ Q     L E    ++AR++E E + + L+ + ++ + + ++
Sbjct: 904  ETELYAEAEEMRVRLAAKKQE----LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959

Query: 370  ITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT 429
            +    E +E        +L++E    D +I+ +   +  ++ + + L  E+  +  +V+ 
Sbjct: 960  LEEQLEEEEA----ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 430  LMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMV 489
            L       +     + +   K     +EL    +   K   EL    ++LE E       
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 490  ILDAAEEKREAIRQL 504
            I +   +  E   QL
Sbjct: 1076 IAELQAQIAELKAQL 1090

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 59/291 (20%), Positives = 127/291 (43%), Gaps = 27/291 (9%)

Query: 220  LEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKL 279
            L    RQ  E+Q    EL+ R  E   + E  +KELE  H    + K        L  KL
Sbjct: 849  LLKVTRQEEEMQAKDEELQ-RTKERQQKAEAELKELEQKHTQLCEEK------NLLQEKL 901

Query: 280  DYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEE---KFTLDKAQLQSEMFCLL 336
              E     + +E   ++     +    + E++  + + EE   +   +K ++Q +M  L 
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961

Query: 337  EKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLH---EAQERGMQSEINQLKVEVC 393
            E+    +A  ++ +L+    + KI++ E + + +   +     + + ++  ++ L   + 
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021

Query: 394  ERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHM 453
            E + + + L K    LK K++ +++E +        L  E +SR     ++E+  RKL  
Sbjct: 1022 EEEEKAKNLTK----LKNKHESMISELEV------RLKKEEKSRQ----ELEKIKRKLEG 1067

Query: 454  EHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQL 504
            E ++L       +  + EL+ ++ + E E+      + D   +K  A++++
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 157  KELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSEL------HSQIESAK 210
            K L E  ++    L     + E+K + L       E  ++ L+  L        ++E  K
Sbjct: 1007 KLLEERVSDLTTNL----AEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

Query: 211  RDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEG----THQLQGQLK 266
            R +   E +      Q+ ELQ  + EL+ +L++   E++  +  LE      +    +++
Sbjct: 1063 RKL---EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

Query: 267  LAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKA 326
              +  ++ L   L+ E+    K +++   +   L     E+ +     +  +E    D  
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

Query: 327  QLQ 329
               
Sbjct: 1180 DDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 7e-12
 Identities = 80/540 (14%), Positives = 163/540 (30%), Gaps = 134/540 (24%)

Query: 8   WLAENLEEMDRS--------VKQMQKLIEDGESLSKFH--RPELTAHIEDFYHLYQSLAE 57
           +L   ++   R         ++Q  +L  D +  +K++  R +    +     L      
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALL----- 145

Query: 58  RYDHLTGELQKNVPSDIPLQGSGNTKSGFAQGSPLLTPDRKMGLHNTSCQATSSTSGGSS 117
                  EL+     ++ + G      G   G        K  +    C +         
Sbjct: 146 -------ELRPA--KNVLIDGVL----GS--G--------KTWVALDVCLSYKVQCKMDF 182

Query: 118 N-FSLKEGAELSSPSSSDSESEFSNS-SVKIHRDAPINMDGKELTEEANETYEELLGRVI 175
             F L     L + +S ++  E       +I  +     D     +    + +  L R++
Sbjct: 183 KIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 176 ---QYEDKLRVLNLSLQLSEEEVARLKS-ELHSQIESAKRDVNIKEADLEMERRQVFELQ 231
               YE+ L VL     +   +     +  L  +I    R   + +  L         L 
Sbjct: 239 KSKPYENCLLVLL---NVQNAKA--WNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLD 292

Query: 232 NYVRELETRLSES------NFEIERLMKELEGTHQLQGQL--KLAQDDVTTLNAKLDYER 283
           ++   L     +S      +   + L +E+  T+  +  +  +  +D + T +   +++ 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKH 349

Query: 284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLD 343
           +   K    I      L     E  ++   LS     F    A + + +  L+       
Sbjct: 350 VNCDKLTTIIESSLNVLEP--AEYRKMFDRLS----VFPPS-AHIPTILLSLI------- 395

Query: 344 ARLKEWELQGKALEDKIRQCE---TEKMEITGLHEAQERGMQSEINQLKVEV-CERDNRI 399
                W        D I+        K+    L E Q +     I  + +E+  + +N  
Sbjct: 396 -----WF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 400 EALNKIMDS--LKLKYDMLMAEKDEINAKVNTLMAEARSRDN----HIGQIEEHSRKLHM 453
                I+D   +   +D      D++              D     HIG    H    H+
Sbjct: 444 ALHRSIVDHYNIPKTFD-----SDDLIPPYL---------DQYFYSHIG----H----HL 481

Query: 454 EHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLCFSLEHYRS 513
           ++ E        R +  + RF    LE ++          A     +I      L+ Y+ 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRF----LEQKIRHD-----STAWNASGSILNTLQQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 63/394 (15%), Positives = 130/394 (32%), Gaps = 117/394 (29%)

Query: 219 DLEMERRQ--------VFELQNYVRELETRLSE-------SNFEIERLMKE---LEGTHQ 260
           D E    Q        VFE   +V   + +  +       S  EI+ ++     + GT +
Sbjct: 8   DFETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 261 LQGQLKLAQDDV------TTLNAKLDYE-RMQVLKFQERIAKVETNL--SDRN---NEVA 308
           L   L   Q+++        L  +++Y+  M  +K ++R   + T +    R+   N+  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 309 EL-KIALSDAEEKFTLDKA--QLQSEMFCLLE------KQALLDARLKEWELQGKALEDK 359
              K  +S  +    L +A  +L+     L++      K  +       +++Q   ++ K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFK 183

Query: 360 I-----RQCETEK--MEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLK 412
           I     + C + +  +E+          +Q  + Q+      R +    +   + S++ +
Sbjct: 184 IFWLNLKNCNSPETVLEM----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 413 YDMLMAEK---------DEI-NAKV--------NTLMAEARSRDNHIGQI--EEHSRKLH 452
              L+  K           + NAK           L+    +R   +        +  + 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATTTHIS 290

Query: 453 MEHAEL-IAASESSRKLVDELRFRVKELENEV----------------------DRQRMV 489
           ++H  + +   E    L+  L  R ++L  EV                      D  + V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 490 ILDAAEEKREAIRQLCFSLEH-----YRSGYQEL 518
             D      E+      SL       YR  +  L
Sbjct: 351 NCDKLTTIIES------SLNVLEPAEYRKMFDRL 378

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 29/235 (12%), Positives = 89/235 (37%), Gaps = 10/235 (4%)

Query: 156  GKELTEEANETYEELLGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQI-ESAKRDVN 214
            G  +  +      E    +IQ   +  +  +    + + +  L+      + +   + + 
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 215  IKEADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTT 274
            I+   +E  ++    L+N + +L+ ++ E N E + L++++     L+       + + +
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN---NLEITYSTETEKLRS 967

Query: 275  LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFC 334
               +L     +      R+  ++  ++    E+ + +      EE     K + +  +  
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 335  LLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLK 389
            L E+  LL    +E   +      +I +   +K+        + + ++ ++N  +
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL------VEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 15/259 (5%)

Query: 259  HQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAE 318
              ++      Q  +     +  Y+ M        I K       R +    LK A+   +
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK-AIVYLQ 894

Query: 319  EKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQE 378
              +    A+ +      L+K  +    ++ ++     LE+KI Q    K++       + 
Sbjct: 895  CCYRRMMAKRE------LKKLKIEARSVERYKKLHIGLENKIMQ-LQRKID---EQNKEY 944

Query: 379  RGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRD 438
            + +  ++N L++       ++ +  + +   + +          +  ++  L  E     
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 439  NHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEK- 497
                 IEE + K   E  +L++  +   +    L+   +EL   +  Q   I +  E+K 
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELK---EQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 498  REAIRQLCFSLEHYRSGYQ 516
             E  +QL   L   R  YQ
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 24/260 (9%)

Query: 130  PSSSDSESEFSNSSVKIHRDAPINMDGK--ELTEEANETYEELLGRVIQYEDKLRVLNLS 187
               ++       +    HRDA ++      +   EAN    +  GR      +       
Sbjct: 1843 IQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPR------H 1896

Query: 188  LQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFE 247
                  +V  L +E   Q+E  +  +NI    L     QV +LQ  + +    L   N +
Sbjct: 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ 1956

Query: 248  IERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEV 307
              + +K++    Q Q   ++ Q D   L  +LD   ++  +   +  K   +L ++    
Sbjct: 1957 ANQKLKQMV---QDQQAAEIKQKDARELQVQLD---VRNKEIAVQKVKAYADL-EKAEPT 2009

Query: 308  AELKIALSDAEEKF---TLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCE 364
              L+  +   E       L + ++ + +  L +  A           + + ++ +  + +
Sbjct: 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069

Query: 365  TEKME-----ITGLHEAQER 379
              K++     +  L+  + R
Sbjct: 2070 -NKVDRSIALLDNLNSERGR 2088

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/180 (10%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 282  ERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQAL 341
             +++++K +  +A      ++ ++  + L+ A  +  E   + + + Q ++  LL+K   
Sbjct: 835  TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI-ELKRQKKIAVLLQKYNR 893

Query: 342  LDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEA 401
            +  +L+ W          +     E  +     +A+ + +++   + +    + ++ + +
Sbjct: 894  ILKKLENWAT-----TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 948

Query: 402  LNKIMDSLKL---------KYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLH 452
            +   +  L           K      +   + +   T      +    + +IE+     H
Sbjct: 949  ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.31
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.99
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.89
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.85
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.81
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.62
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.4
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.35
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.34
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.56
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.5
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.18
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.9
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	95.84
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.57
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.54
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.91
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.6
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.48
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	94.34
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.64
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.3
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.11
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	92.9
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.3
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.8
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.52
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.44
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	90.85
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.78
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.75
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.83
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.7
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.54
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.05
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.94
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	87.51
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	87.17
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.78
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	85.48
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	84.89
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.87
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.64
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	84.37
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.07
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.37
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	83.17
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.06
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.9
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	81.55
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.07
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.09

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.31  E-value=2.2e-07  Score=83.52  Aligned_cols=31  Identities=3%  Similarity=-0.126  Sum_probs=21.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHHhhH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVARLK  199 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~rlk  199 (533)
                      +|-+++..++.++..+...+..++.++..+.
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~   33 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEAEADKKAAE   33 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5666777777777777777777666666664

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.99  E-value=7.3e-10  Score=126.61  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 037185          438 DNHIGQIEEHSRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQ  486 (533)
Q Consensus       438 d~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q  486 (533)
                      ..+++.++..+.+|.-+...+-.....+.+.+.+|..++.+|+++++..
T Consensus      1087 e~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~ 1135 (1184)
T 1i84_S         1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135 (1184)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333443333333333333444444555555555555554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.89  E-value=2e-09  Score=123.01  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=9.2

Q ss_pred             hhHHHHHHHHHHHhhhHHHHH
Q 037185          176 QYEDKLRVLNLSLQLSEEEVA  196 (533)
Q Consensus       176 elEdELreaneKL~~sEEe~~  196 (533)
                      +++.+|..++.+|...+..+.
T Consensus       861 ~L~~eL~el~~~L~~le~~l~  881 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELK  881 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.85  E-value=0.0016  Score=61.18  Aligned_cols=110  Identities=22%  Similarity=0.228  Sum_probs=79.2

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhHHHHHhhHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 037185          171 LGRVIQYEDKLRVLNLSLQLSEEEVARLKSELHSQIESAKRDVNIKEADLEMERRQVFELQNYVRELETRLSESNFEIER  250 (533)
Q Consensus       171 ~~RiielEdELreaneKL~~sEEe~~rlk~el~k~~~~a~~dl~i~k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~e  250 (533)
                      +.||+.||-.|-++|+||+.--|-.+|++..                         ..+++..+..++..          
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~-------------------------~tEl~k~~~~~E~~----------   49 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKS-------------------------HTEMSKSISQLESL----------   49 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH----------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------------------HHHHHHHHHHHHHH----------
Confidence            5689999999999999999988888888522                         22222222333322          


Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHh
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALS  315 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~ls  315 (533)
                      +--|++.+..|+..-..++++++.+-+.|+.|++--.--.++|+.|...+..+..++.-++..++
T Consensus        50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           50 NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22345888888899999999999999999999988777888888888877777778887776665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.81  E-value=0.0017  Score=62.77  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      .+|.++...++.+..+|..+..+++.+++.+..-..++.++...|+.++..+......|.+.+..+..+.  -.-|=..|
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~~kE~~aL   95 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--SERELRSL   95 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSSHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHH
Confidence            4555666677777888888888888888888777777777877788888777777777777777775432  33444556


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e  348 (533)
                      +.||..+...+..++..+.+
T Consensus        96 ~kEie~~~~~i~~lE~eile  115 (256)
T 3na7_A           96 NIEEDIAKERSNQANREIEN  115 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.62  E-value=0.0044  Score=59.12  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHH----HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQ----VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e----v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK  320 (533)
                      .++..+...+++|+..+..+..++..|++|+..-..+    +..||..|+.+.+....+...|++|+++--|.+.+
T Consensus        49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4455566788999999999999999999999888877    88888888888888888888888888877766655

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.40  E-value=0.018  Score=72.74  Aligned_cols=135  Identities=17%  Similarity=0.099  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185          230 LQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE  309 (533)
Q Consensus       230 LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~  309 (533)
                      ++.+..-|+..+..|....+.+..+++.+..+|-+|+..++++...-.+...+..++.+-++.+...++.+..-..+|..
T Consensus      1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~ 1994 (3245)
T 3vkg_A         1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV 1994 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566677777778888889999999999999999999988888888888777777777777777777766667766


Q ss_pred             HHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          310 LKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       310 LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      .|...-.-..+--|- .-++.++..+..+......+|.+.+.....+++++.++.+
T Consensus      1995 ~k~~~e~dL~~A~Pa-~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A         1995 QKVKAYADLEKAEPT-GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp             HHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555432222222222 4455566666666666666666644444444444444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.35  E-value=0.0061  Score=70.19  Aligned_cols=30  Identities=17%  Similarity=0.420  Sum_probs=1.9

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHH
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAE  318 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAe  318 (533)
                      |+..|..|...|.....+..+|.+.+....
T Consensus       926 LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~  955 (1080)
T 2dfs_A          926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLE  955 (1080)
T ss_dssp             -------------------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333333333333443333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.34  E-value=0.053  Score=52.40  Aligned_cols=113  Identities=12%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             hhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhh
Q 037185          300 LSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQER  379 (533)
Q Consensus       300 Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~  379 (533)
                      |+..|.+|..|+..+...           .++|..|..+.+.+..++.........++.++++++.+-.+...       
T Consensus        13 LQ~lD~~i~~l~~~~~~l-----------p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~-------   74 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREK-----------RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA-------   74 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            667788888777666542           34444444444444444444333333344444444443333222       


Q ss_pred             hhhhHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 037185          380 GMQSEINQLKVEV--CERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEA  434 (533)
Q Consensus       380 ~L~gEie~Lk~El--~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~  434 (533)
                          -|...+..+  ...-+++.+|.+.|+.++.++..+..+.-.+...+..+.+.+
T Consensus        75 ----ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l  127 (256)
T 3na7_A           75 ----KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ  127 (256)
T ss_dssp             ----HHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111111111  123445555555555555555444444444444444433333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.07  E-value=0.029  Score=53.61  Aligned_cols=125  Identities=17%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 037185          217 EADLEMERRQVFELQNYVRELETRLSESNFEIERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKV  296 (533)
Q Consensus       217 k~kLe~ee~ei~~LQ~~v~ELE~~~~~l~~s~~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~l  296 (533)
                      .+.+.+-+.....++.++.+|+.....+          ++..++|.++|+.                 ++.-+.-+++.|
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EF----------qesSrELE~ELE~-----------------eL~~~Ek~~~~L   61 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEF----------QEGSRELEAELEA-----------------QLVQAEQRNRDL   61 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence            3444455555666666666666444333          3455555444432                 222333355555


Q ss_pred             hhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          297 ETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       297 kt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      ...+..+..++..+|..+..+..-+.-.-+.|+.+|+.|...+..|..+++++|..---+|...|...+--.
T Consensus        62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle  133 (189)
T 2v71_A           62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE  133 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence            666666667788888888777777777788899999999999999999999977777777777777666333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.90  E-value=0.013  Score=67.55  Aligned_cols=92  Identities=12%  Similarity=0.126  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHh----------hhhhHHHHH
Q 037185          333 FCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVC----------ERDNRIEAL  402 (533)
Q Consensus       333 skL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~----------~~~~~Ie~L  402 (533)
                      ..|...+..|+.++.++..+....+++.+.+.+.+..++.       .+..|++.|+.++.          ..++.|..|
T Consensus       917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~-------~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L  989 (1080)
T 2dfs_A          917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI-------TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL  989 (1080)
T ss_dssp             ----------------------------------CHHHHH-------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566677777777555444455555555544333322       44445555544433          333344444


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 037185          403 NKIMDSLKLKYDMLMAEKDEINAKVNTLM  431 (533)
Q Consensus       403 Nk~id~Lk~k~e~L~~EK~~l~~kv~~L~  431 (533)
                      ...++.++.++..+..|+..+..+...+.
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.56  E-value=0.017  Score=60.15  Aligned_cols=65  Identities=14%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e  348 (533)
                      .++.+|.+++.+....+.....+|.+.++.+....+.+.-.+..+..++.++.+..+.++.++..
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  527 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA  527 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            45666777777777777777777777777666555666666666666666666666666665555

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.50  E-value=0.37  Score=44.68  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             HHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 037185          253 KELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIAL  314 (533)
Q Consensus       253 kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~l  314 (533)
                      ...++|+.|+..|+.|..       +.+---|.|.+|+..|.+++..|..-......+...|
T Consensus        74 ~yEeqIk~L~~kLKEAE~-------RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL  128 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAET-------RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM  128 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777776655       3333445677777777777766654444444444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.18  E-value=0.84  Score=42.99  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=34.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhh
Q 037185          392 VCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRD  438 (533)
Q Consensus       392 l~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd  438 (533)
                      +.+...+|..|..+++.++..+.....|+..+..+|..|=-+-.+.+
T Consensus        92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33455578888888888888888888888888888776666655555

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.90  E-value=1.1  Score=57.27  Aligned_cols=40  Identities=30%  Similarity=0.399  Sum_probs=20.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 037185          388 LKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKV  427 (533)
Q Consensus       388 Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv  427 (533)
                      ....+...++.|..|+..|+.|+.+++..+.||..+.+.+
T Consensus      2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A         2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555555555555555554444443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=95.84  E-value=0.087  Score=46.75  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHH
Q 037185          275 LNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDAR  345 (533)
Q Consensus       275 ~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~k  345 (533)
                      |+.+-+.=+.+|..|++++..-+..|.++..-...++..+.+=..+++...-++..++..|+++|..|-+|
T Consensus        36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk  106 (112)
T 1x79_B           36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK  106 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            77777788899999999999999999999999999999999999999999999999999999999988776

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.57  E-value=0.51  Score=41.74  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh
Q 037185          249 ERLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL  328 (533)
Q Consensus       249 ~ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l  328 (533)
                      +++.+..+.++.|...|.....              .-.+|.+....+.....++...+..-...++||++.+       
T Consensus        13 ~E~~~~~eel~~lke~l~k~e~--------------~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~-------   71 (129)
T 2fxo_A           13 KEMASMKEEFTRLKEALEKSEA--------------RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC-------   71 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------
Confidence            4555555555555555443333              2223333333333333333333444444455555542       


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhh
Q 037185          329 QSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKME  369 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E  369 (533)
                          ..|....+.|+.+|.+.+.+..-.|+....+.++|..
T Consensus        72 ----~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk  108 (129)
T 2fxo_A           72 ----DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK  108 (129)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2444455555555555444444456655555555543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.54  E-value=1.5  Score=40.65  Aligned_cols=16  Identities=19%  Similarity=0.206  Sum_probs=9.3

Q ss_pred             hHHHHHhhhhhHHHHh
Q 037185          261 LQGQLKLAQDDVTTLN  276 (533)
Q Consensus       261 LQ~~Le~~q~e~a~~k  276 (533)
                      +.+.|+.+..-+.+..
T Consensus        26 ~E~dLEraEERae~aE   41 (155)
T 2efr_A           26 LKKLLERAEERAELSE   41 (155)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6777777666443333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.14  E-value=0.32  Score=43.02  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHH----HHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhh---
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQ----VLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQL---  328 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~e----v~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l---  328 (533)
                      ..+++|+.....+.-++..|+.|+..-..+    +..||..|..+.+.-..+...||+|+++--|-+..--.--++|   
T Consensus         3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B            3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            467889999999999999999999998865    6779999999999999999999999999888776643333322   


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 037185          329 QSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       329 ~aEiskL~E~~~~Le~kL~e  348 (533)
                      .+-+-...|.++.|+..|.+
T Consensus        83 E~k~n~aiErnalLE~El~E  102 (111)
T 2v66_B           83 EQRLNQAIERNAFLESELDE  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            23333444555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.91  E-value=0.2  Score=52.07  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=11.6

Q ss_pred             HHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185          307 VAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK  347 (533)
Q Consensus       307 Ir~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~  347 (533)
                      ++++..+.+...+++.-|..++..+|.+|.+++...+..+.
T Consensus       440 ~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~  480 (597)
T 3oja_B          440 ITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ  480 (597)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444444444444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.60  E-value=0.54  Score=41.45  Aligned_cols=102  Identities=19%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          289 FQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       289 Lqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      |+..+...-..+.....+|.+|+..+.           .|.+||..|...+++|+..|.+.+.+.               
T Consensus        20 l~~~~~~~~~~l~~~k~Ei~elrr~iq-----------~L~~el~~l~~~~~~LE~~l~e~e~~~---------------   73 (129)
T 3tnu_B           20 LQQTAGRHGDDLRNTKHEISEMNRMIQ-----------RLRAEIDNVKKQCANLQNAIADAEQRG---------------   73 (129)
T ss_dssp             --------------CHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHH---------------
Confidence            333334444444444555555555554           555666666666666666666522221               


Q ss_pred             hhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 037185          369 EITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNT  429 (533)
Q Consensus       369 E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~  429 (533)
                            +.+...+++.|..|..       .+..+..+++..-.+|..|+.=|-.|+.+|++
T Consensus        74 ------~~~l~~~q~~i~~lE~-------eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIat  121 (129)
T 3tnu_B           74 ------ELALKDARNKLAELEE-------ALQKAKQDMARLLREYQELMNTKLALDVEIAT  121 (129)
T ss_dssp             ------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1222334444444444       44444555555566677777777777777755

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.48  E-value=2.4  Score=37.42  Aligned_cols=45  Identities=27%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhc
Q 037185          328 LQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITG  372 (533)
Q Consensus       328 l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~  372 (533)
                      -..+|.++.++...|..+|...+....-++.+..++..+|..+..
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~   55 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL   55 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777666666677777777777766554

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.34  E-value=0.46  Score=42.03  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 037185          327 QLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIM  406 (533)
Q Consensus       327 ~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~i  406 (533)
                      .|.+||..|...+++|+..|.+.+.+                     ++.+...+++.|..|..       .+..+..++
T Consensus        49 ~L~~el~~l~~~~~sLE~~l~e~e~~---------------------~~~~l~~~q~~i~~lE~-------eL~~~r~em  100 (131)
T 3tnu_A           49 NLEIELQSQLSMKASLENSLEETKGR---------------------YCMQLAQIQEMIGSVEE-------QLAQLRCEM  100 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            45555556666666666666552221                     11222233444444443       444455555


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHH
Q 037185          407 DSLKLKYDMLMAEKDEINAKVNT  429 (533)
Q Consensus       407 d~Lk~k~e~L~~EK~~l~~kv~~  429 (533)
                      +..-.+|..|+.=|-.|+.+|++
T Consensus       101 ~~ql~EYq~Ll~vKl~Ld~EIat  123 (131)
T 3tnu_A          101 EQQNQEYKILLDVKTRLEQEIAT  123 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677777777777777754

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.30  E-value=0.95  Score=49.14  Aligned_cols=132  Identities=21%  Similarity=0.272  Sum_probs=89.4

Q ss_pred             hhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhh-hHHHH
Q 037185          370 ITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL-KLKYDMLMAEKDEINAKVNTLMAEARSRDNHIG-QIEEH  447 (533)
Q Consensus       370 ~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L-k~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~-qme~h  447 (533)
                      |+.+++-|++.+..-|+.|+..+++.    +.-++++... +..++.|.......+ .       ....=++|. +|++|
T Consensus        51 LQglLdkqErDltkrINELKnqLEdl----sKnsKdseqy~k~~~E~Lr~rq~q~~-d-------NdNtynE~S~ELRRr  118 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEY----QKNNKDSHSLTTNIMEILRGDFSSAN-N-------RDNTYNRVSEDLRSR  118 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHTTSSHHHHHH-H-------HHHHHHHTTHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHHHHH----HhhchhHHHHHHHHHHHHHHHHHhhh-c-------cchhHHHHHHHHHHH
Confidence            45567778889999999988888654    4555555554 555555544332222 1       122334444 78888


Q ss_pred             HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-------hhhHhhhhhHHHHHH
Q 037185          448 SRKLHMEHAELIAASESSRKLVDELRFRVKELENEVDRQRMVILDAAEEKREAIRQLC-------FSLEHYRSGYQELRQ  520 (533)
Q Consensus       448 l~qL~~e~~~l~~~~~~~~~~v~eL~~rv~eLE~Eve~Q~~~i~e~aEeKREAIRQLC-------fslehyr~~y~~L~~  520 (533)
                      +.-|..+.-..++....+++.|.+++.++..||.-|.-|..           +-|-=|       +=++.|-+--++|.|
T Consensus       119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir-----------sCKgsCsr~~~~~vd~~sY~~~QKQLeQ  187 (562)
T 3ghg_A          119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR-----------SCRGSCSRALAREVDLKDYEDQQKQLEQ  187 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HGGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccccccchheeecchHHHHHHHHHHHH
Confidence            88888887777788888888899999988888888776543           333334       236678888889999


Q ss_pred             HHcC
Q 037185          521 AFLG  524 (533)
Q Consensus       521 ~~~G  524 (533)
                      +.+=
T Consensus       188 v~a~  191 (562)
T 3ghg_A          188 VIAK  191 (562)
T ss_dssp             HHTT
T ss_pred             Hhhc
Confidence            8874

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.11  E-value=1.5  Score=38.82  Aligned_cols=72  Identities=18%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             HHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185          292 RIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC  363 (533)
Q Consensus       292 ri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql  363 (533)
                      |+..|+.....+..++..+|..+..+..-..-.-+.|+.||..|...+..|-.+++++|..---+|-.-|-.
T Consensus         4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t   75 (111)
T 2v66_B            4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT   75 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            455556666666778888998888888877888888888888888888888888888544444444444433

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=92.90  E-value=5.7  Score=36.63  Aligned_cols=89  Identities=25%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             HHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhH
Q 037185          251 LMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQS  330 (533)
Q Consensus       251 i~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~a  330 (533)
                      |+.|+.-..++|.+|+.-|.+..-.-..|..|..-|-.||-|-.       -.+.||..|+..++.++.+|  +|+.-.-
T Consensus        13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~-------~HQKEi~~Lrae~~~~QRn~--~K~~~~L   83 (167)
T 4gkw_A           13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNV-------AHQKEIGKLRAELGTAQRNL--EKADQLL   83 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc-------HHHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence            45566777788888888888877777788777777777766643       34668899999999998885  5655333


Q ss_pred             HHHHHHHHHHHHH-HHHHH
Q 037185          331 EMFCLLEKQALLD-ARLKE  348 (533)
Q Consensus       331 EiskL~E~~~~Le-~kL~e  348 (533)
                      --..++--+.+|+ .+|++
T Consensus        84 krn~~qQnQQSlDiRKLrE  102 (167)
T 4gkw_A           84 KRNSQQQNQQSLDMRKLGE  102 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTHH
T ss_pred             HhhhHHHhHhhhhHHHHHH
Confidence            3334445555555 34556

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.30  E-value=1.1  Score=37.61  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHH
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCL  335 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL  335 (533)
                      -....|..++.+++..+.-++.|++.|..--......              |.-||..+-+|    ++-|+.|.+.|.-|
T Consensus        14 ~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d--------------~~~LrkdvD~a----~l~r~dLE~kvesL   75 (86)
T 3swk_A           14 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT--------------LQSFRQDVDNA----SLARLDLERKVESL   75 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHTTHHHH----HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHHHH----HHHHHHHHHHHHHH
Confidence            3455677889999999999999999988644444444              44444444433    34455666666666


Q ss_pred             HHHHHHH
Q 037185          336 LEKQALL  342 (533)
Q Consensus       336 ~E~~~~L  342 (533)
                      .+++.-|
T Consensus        76 ~eEl~fL   82 (86)
T 3swk_A           76 QEEIAFL   82 (86)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.80  E-value=1.4  Score=38.73  Aligned_cols=64  Identities=16%  Similarity=0.259  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHH
Q 037185          283 RMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARL  346 (533)
Q Consensus       283 ~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL  346 (533)
                      +.|+.+|.-+|..|...++.+......|+..+.|++..+..+-.++++-|..|-.+...+...+
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~   98 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM   98 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3455556666666666666666666667777777777766666666665555555554444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.52  E-value=2.8  Score=35.80  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhH---hhhhH
Q 037185          254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDK---AQLQS  330 (533)
Q Consensus       254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EK---a~l~a  330 (533)
                      ...++..|+.+.+++...+..+..++........++.+-|+-|.-.+..+++++..+...|.+|..++--.-   +.-.+
T Consensus         7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~   86 (101)
T 3u1c_A            7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777777777777777777766555555555555555555555555555555555555555433221   12223


Q ss_pred             HHHHHHHHHHHHH
Q 037185          331 EMFCLLEKQALLD  343 (533)
Q Consensus       331 EiskL~E~~~~Le  343 (533)
                      ++.-|.-.+..|+
T Consensus        87 ev~~L~RriqllE   99 (101)
T 3u1c_A           87 EVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            4555544444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.44  E-value=1.4  Score=38.93  Aligned_cols=66  Identities=17%  Similarity=0.296  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHH
Q 037185          282 ERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLK  347 (533)
Q Consensus       282 e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~  347 (533)
                      -+.|+.+|.-+|..|...++........|+..+.|++..+..+-.++++-|..|-.+...+...+.
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~  101 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME  101 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666777777777777776666666666665555555544443

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=90.85  E-value=5.1  Score=34.72  Aligned_cols=73  Identities=26%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Q 037185          284 MQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQC  363 (533)
Q Consensus       284 ~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirql  363 (533)
                      ++...|...++-+..+-+.|++.|++|+..+-|+..++-.||-.      +|     -|+.+|..-|--.-.+|=++...
T Consensus        25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklA------kl-----dLE~RLsKtEKDkAiLELkLaE~   93 (101)
T 1d7m_A           25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLA------RM-----ELEARLAKTEKDRAILELKLAEA   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH------HH-----HHHHHHhhhhhHHHHHHHHHHHh
Confidence            44455666677778888899999999999999999999888743      22     35555555444444444444444


Q ss_pred             HHHH
Q 037185          364 ETEK  367 (533)
Q Consensus       364 eaEK  367 (533)
                      ..+|
T Consensus        94 ~Dek   97 (101)
T 1d7m_A           94 IDEK   97 (101)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            4433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=90.78  E-value=1.6  Score=37.10  Aligned_cols=76  Identities=21%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHhH
Q 037185          339 QALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEAL-NKIMDSLKLKYDMLM  417 (533)
Q Consensus       339 ~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~L-Nk~id~Lk~k~e~L~  417 (533)
                      ...|-.+|..|=..+++||.+=+.|+++-.                  .+..   .....|..+ ...|..|+..++.+.
T Consensus        11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~------------------~l~~---~~~~~~~~~ye~~i~~Lr~~i~~~~   69 (93)
T 3s4r_A           11 LQELNDRFANLIDKVRFLEQQNKILLAELE------------------QLKG---QGKSRLGDLYEEEMRELRRQVDQLT   69 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhh---ccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            345667777765556666666555554221                  1111   011123333 466777888888888


Q ss_pred             HhHHHHHHHHHHHHHHhh
Q 037185          418 AEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       418 ~EK~~l~~kv~~L~ad~~  435 (533)
                      .|++.+...+++|-+++.
T Consensus        70 ~ek~~l~~e~dnl~~~~~   87 (93)
T 3s4r_A           70 NDKARVEVERDNLAEDIM   87 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888877666543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.75  E-value=10  Score=35.15  Aligned_cols=13  Identities=23%  Similarity=0.110  Sum_probs=5.4

Q ss_pred             HhhhhHHHHHHHH
Q 037185          325 KAQLQSEMFCLLE  337 (533)
Q Consensus       325 Ka~l~aEiskL~E  337 (533)
                      ++....++.+|.+
T Consensus        53 ~~~~~~e~~~L~~   65 (154)
T 2ocy_A           53 LSDRDDEVKRLRE   65 (154)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHH
Confidence            3344444444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.83  E-value=7.6  Score=33.71  Aligned_cols=88  Identities=20%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHH
Q 037185          405 IMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAA-SESSRKLVDELRFRVKELENEV  483 (533)
Q Consensus       405 ~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~-~~~~~~~v~eL~~rv~eLE~Ev  483 (533)
                      .++.++.++.-|..+...+..++..|+.++..=-..-.+.|....++.-|--.|.+. ++.|++-|..=|..-..+|..+
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn   85 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN   85 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555566666666666666555555556666777776666666654 5777888888777777777777


Q ss_pred             HHHHHHHhh
Q 037185          484 DRQRMVILD  492 (533)
Q Consensus       484 e~Q~~~i~e  492 (533)
                      +.-+..|-|
T Consensus        86 ~~L~~qL~d   94 (97)
T 2eqb_B           86 KRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            766666554

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.70  E-value=2.2  Score=35.64  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhHHhhhchhHhhhhHHHHHHHHHHHHHHHHHHH
Q 037185          306 EVAELKIALSDAEEKFTLDKAQLQSEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       306 EIr~LK~~lsDAeeK~s~EKa~l~aEiskL~E~~~~Le~kL~e  348 (533)
                      ||++|+..+.++    +.||+.+..+|-.+......+..|+++
T Consensus         1 Ei~eLr~qi~~l----~~e~~~l~~e~dn~~~~~edfk~KyE~   39 (86)
T 3swk_A            1 EMRELRRQVDQL----TNDKARVEVERDNLAEDIMRLREKLQE   39 (86)
T ss_dssp             CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777544    568888888888888887777777665

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.54  E-value=2.4  Score=38.27  Aligned_cols=47  Identities=26%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             HhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhh
Q 037185          256 EGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSD  302 (533)
Q Consensus       256 E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~  302 (533)
                      ..+-+|..+|..++..+...+..++.-++++..||.+|+.|.+.+.+
T Consensus        89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444455555555544444445555555666677777777665543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.05  E-value=6.5  Score=33.29  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=41.6

Q ss_pred             HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185          255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK  320 (533)
                      ..++..|+-+.+++...+..+..++........++.+.|.-|.-.+..++.++..+...+.++..+
T Consensus         8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k   73 (101)
T 3u59_A            8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777655555555555555555555555555565555555555544

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.94  E-value=6.4  Score=35.36  Aligned_cols=65  Identities=22%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             HHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhc----hhhhhHHHHHHHHHHhhHHh
Q 037185          255 LEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETN----LSDRNNEVAELKIALSDAEE  319 (533)
Q Consensus       255 ~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~----Ls~~d~EIr~LK~~lsDAee  319 (533)
                      +..++-||.+|-.+|+-..-|..+..+=.+=|..|.+.+...+++    +.+++.||.+|++.|-||++
T Consensus        24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~a   92 (121)
T 3mq7_A           24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA   92 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777778887777766666655555555566666666665555    55666666666666665544

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=87.17  E-value=4.4  Score=34.32  Aligned_cols=35  Identities=26%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          331 EMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       331 EiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      +|..|...-++-=+|.+.+|.+-..||.++.++..
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35566666666666666666666667777766664

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.78  E-value=4.7  Score=32.93  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=41.5

Q ss_pred             HHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhh
Q 037185          254 ELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEK  320 (533)
Q Consensus       254 l~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK  320 (533)
                      +..++..|+.+.+++...+..+..++........++.+-|..|.-.+..++.++..+...+.+|..|
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k   70 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777788888877777777766655555555555555555555555555555555555544

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=85.48  E-value=6.4  Score=35.01  Aligned_cols=70  Identities=24%  Similarity=0.299  Sum_probs=39.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 037185          393 CERDNRIEALNKIMDSLKLKYDMLMAEKDEINAKVNTLMAEARSRDNHIGQIEEHSRKLHMEHAELIAASESSRKLVDEL  472 (533)
Q Consensus       393 ~~~~~~Ie~LNk~id~Lk~k~e~L~~EK~~l~~kv~~L~ad~~sRd~~I~qme~hl~qL~~e~~~l~~~~~~~~~~v~eL  472 (533)
                      +++...|+.|...++.|+..++.++.|-                 -..|.+|.+++++|..+-+.--.....|.-..+.|
T Consensus        11 d~rD~~Ie~Lkreie~lk~ele~l~~E~-----------------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~L   73 (120)
T 3i00_A           11 DEKDHLIERLYREISGLKAQLENMKTES-----------------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFL   73 (120)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777777777777776665544                 23355666677777655543333334444444555


Q ss_pred             HHHHHHH
Q 037185          473 RFRVKEL  479 (533)
Q Consensus       473 ~~rv~eL  479 (533)
                      |..+..|
T Consensus        74 r~e~~~l   80 (120)
T 3i00_A           74 RAELDEL   80 (120)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.89  E-value=14  Score=32.13  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhh
Q 037185          330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCE  394 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~  394 (533)
                      .+..+|.+....|+.++..|+..+.-|-+.+..-.+-..+++.    ....+.+|++-|++.||+
T Consensus         5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFe   65 (97)
T 2eqb_B            5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFD   65 (97)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666555554454444444443333333    444555666666666654

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.87  E-value=3.4  Score=36.64  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=26.6

Q ss_pred             HHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 037185          265 LKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAE  309 (533)
Q Consensus       265 Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~  309 (533)
                      +..++.-+..++.-|.+|+.---++++++-.|..+|..+..++..
T Consensus        64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            344445555666667777765566666666666666655555443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=84.37  E-value=3.6  Score=34.74  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=35.5

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 037185          325 KAQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCET  365 (533)
Q Consensus       325 Ka~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqlea  365 (533)
                      |..++-|+++....+.+++.+|++.+.+.+.|..+++++..
T Consensus        26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~   66 (81)
T 1wt6_A           26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999999999999999988888888777777766

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.07  E-value=5.5  Score=35.97  Aligned_cols=11  Identities=9%  Similarity=0.111  Sum_probs=4.0

Q ss_pred             HhhhhhHHHHH
Q 037185          256 EGTHQLQGQLK  266 (533)
Q Consensus       256 E~ik~LQ~~Le  266 (533)
                      +.+..|..+++
T Consensus        75 ~~~~~L~~~l~   85 (138)
T 3hnw_A           75 KMADSLSLDIE   85 (138)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.37  E-value=11  Score=31.45  Aligned_cols=74  Identities=22%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHhhhhchhhHhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 037185          330 SEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKMEITGLHEAQERGMQSEINQLKVEVCERDNRIEALNKIMDSL  409 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~E~~~~~~~q~~~L~gEie~Lk~El~~~~~~Ie~LNk~id~L  409 (533)
                      .+|..+-++...+.+.|...+....-++.+..++..+|..+..    |                            +++.
T Consensus        14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~----q----------------------------l~ea   61 (89)
T 3bas_A           14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG----S----------------------------MKQL   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------------------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------------------------HHhH
Confidence            3455555555555555555444444466666666666555433    1                            4455


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHhh
Q 037185          410 KLKYDMLMAEKDEINAKVNTLMAEAR  435 (533)
Q Consensus       410 k~k~e~L~~EK~~l~~kv~~L~ad~~  435 (533)
                      ..+++.|..-|..+..+|+.|-+.+.
T Consensus        62 Ee~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           62 EDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55566666667666666655544443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=83.17  E-value=11  Score=34.48  Aligned_cols=28  Identities=25%  Similarity=0.157  Sum_probs=16.6

Q ss_pred             HHHHhhhhhHHHHHhhhhhHHHHhhhhH
Q 037185          253 KELEGTHQLQGQLKLAQDDVTTLNAKLD  280 (533)
Q Consensus       253 kl~E~ik~LQ~~Le~~q~e~a~~k~Kle  280 (533)
                      ...+.+..|..+|+.|...+....+|++
T Consensus        49 ~deEr~~~lE~qLkeak~~aeeadrKye   76 (147)
T 2b9c_A           49 KDEEKMEIQEIQLKEAKHIAEDADRKYE   76 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3445666666666666665555555553

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.06  E-value=21  Score=30.35  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHh
Q 037185          326 AQLQSEMFCLLEKQALLDARLKEWELQGKALEDKIRQCETEKM  368 (533)
Q Consensus       326 a~l~aEiskL~E~~~~Le~kL~e~e~~~~~lEdeirqleaEK~  368 (533)
                      ..+.+++..|..+-+.|-..|.+++.+...+..+|..++++..
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~   49 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE   49 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3455555566666666666666655555555555555554433

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.90  E-value=11  Score=33.50  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             HHHHHHHhhhhhHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhHHhhhchhHhhhh
Q 037185          250 RLMKELEGTHQLQGQLKLAQDDVTTLNAKLDYERMQVLKFQERIAKVETNLSDRNNEVAELKIALSDAEEKFTLDKAQLQ  329 (533)
Q Consensus       250 ei~kl~E~ik~LQ~~Le~~q~e~a~~k~Kle~e~~ev~kLqeri~~lkt~Ls~~d~EIr~LK~~lsDAeeK~s~EKa~l~  329 (533)
                      +..+|+....+|+.+|.....+-+.+...          +++--...+.+++.+...|..-++.|.+..+.|+.=|..++
T Consensus         7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq   76 (112)
T 1x79_B            7 QVKKLQLMLRQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ   76 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777766655544444          34445567888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 037185          330 SEMFCLLEKQALLDARLKE  348 (533)
Q Consensus       330 aEiskL~E~~~~Le~kL~e  348 (533)
                      -.|.+|......+-.+|..
T Consensus        77 ~qL~~Lt~~Re~V~~eL~r   95 (112)
T 1x79_B           77 EQMAVLMQSREQVSEELVR   95 (112)
T ss_dssp             HHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999888877776665

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=81.55  E-value=3.9  Score=37.34  Aligned_cols=21  Identities=10%  Similarity=-0.005  Sum_probs=12.3

Q ss_pred             HHHHhhHHHHHHHHHHHhhhH
Q 037185          172 GRVIQYEDKLRVLNLSLQLSE  192 (533)
Q Consensus       172 ~RiielEdELreaneKL~~sE  192 (533)
                      .||..||..|++|+.-.+-.+
T Consensus        52 Er~~~lE~qLkeak~~aeead   72 (147)
T 2b9c_A           52 EKMEIQEIQLKEAKHIAEDAD   72 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            366666666766665444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.07  E-value=18  Score=29.49  Aligned_cols=28  Identities=4%  Similarity=-0.109  Sum_probs=19.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhHHHHH
Q 037185          169 ELLGRVIQYEDKLRVLNLSLQLSEEEVA  196 (533)
Q Consensus       169 ~L~~RiielEdELreaneKL~~sEEe~~  196 (533)
                      ++-.|+..+..++-.+.+++...+.+..
T Consensus         3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~   30 (81)
T 1ic2_A            3 AIKKKMQMLKLDKENALDRAEQAEADKK   30 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777777777777777777666533

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.09  E-value=7.5  Score=35.47  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=11.9

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 037185          380 GMQSEINQLKVEVCERDNRIEALNKIMDSLKL  411 (533)
Q Consensus       380 ~L~gEie~Lk~El~~~~~~Ie~LNk~id~Lk~  411 (533)
                      .+.....+|...+.+.+..|..++..+.+||.
T Consensus       100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A          100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455666666666677777666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00