Citrus Sinensis ID: 037190

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------

MASKPDECQPHPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPSS

cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccc

ccccccccccccccHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHccccccccccccHHcHHEHEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcEEEcccccHcEEEEEHHHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHHHcccHHHHcccccccccccccccccccccccccccc

maskpdecqphpvkeqlpgvdfcvsssppwseaMILGFQHYLVMLGTtviipttlvplmgggnveKAQVINTSLFVAGINTLLQtsfgtrlpvvmggsyaFNITSISIAasnrfniytdpeQRFKESMKTMQGALIMASLFNMLIGFFgfgtifgrflnplaavplvtltglglyahgfpqlaKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLtglydnrppstqtscrtdrsglitaapwimvpfplqwgpplfnagDAFAMMAASFVAIIESTGTFIaasrygsatpmppcvlsrgigwqglgllldgafgtgsgcAASVENagllgltrngsrRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYisghdpvhtastsfNNMMQVIFSSPATVAIIVAYFLDCthslghsatrqdcgrhwwgkflyfnrdartsdfyslpcnlsrffpss

maskpdecqphpvkeqlpgvDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLtglydnrppstqtscRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGhsatrqdcgrHWWGKFLYFNRDARTSdfyslpcnlsrffpss

MASKPDECQPHPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLigffgfgtifgRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPSS

******************GVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDN********CRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRF****

*********************FCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGH*****DC*******************FYSLPCNLSRFFP**

**********HPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPSS

****************LPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQDCGRHWWGKFLYF*****TSDFYSLPCNLSRFFP**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		526	2.2.26 [Sep-21-2011]
P93039		526	Nucleobase-ascorbate tran	yes	no	0.998	0.998	0.695	0.0
Q27GI3		532	Nucleobase-ascorbate tran	no	no	0.996	0.984	0.635	0.0
Q0WPE9		538	Nucleobase-ascorbate tran	no	no	0.992	0.970	0.618	0.0
Q8VZQ5		539	Nucleobase-ascorbate tran	no	no	0.994	0.970	0.587	0.0
Q8RWE9		528	Nucleobase-ascorbate tran	no	no	0.980	0.977	0.625	0.0
Q41760		527	Nucleobase-ascorbate tran	N/A	no	0.992	0.990	0.584	1e-179
O04472		541	Putative nucleobase-ascor	no	no	0.988	0.961	0.548	1e-171
Q94C70		524	Nucleobase-ascorbate tran	no	no	0.988	0.992	0.541	1e-164
Q9SHZ3		520	Nucleobase-ascorbate tran	no	no	0.977	0.988	0.524	1e-154
Q8GZD4		551	Nucleobase-ascorbate tran	no	no	0.990	0.945	0.471	1e-133

>sp\|P93039\|NAT4_ARATH Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2	Back alignment and function desciption

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/525 (69%), Positives = 444/525 (84%)

Query: 1   MASKPDECQPHPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMG 60
           MA+K D+  P PVK+QLPGV+FCVSSSP W E ++LGFQHY+VMLGTTVIIP+ LVPLMG
Sbjct: 1   MATKTDDFAPFPVKDQLPGVEFCVSSSPNWPEGIVLGFQHYIVMLGTTVIIPSILVPLMG 60

Query: 61  GGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDP 120
           GG+VEKA+VINT LFV+GINTLLQ+ FG+RLPVVMG SYA+ I ++ I  S RF  Y  P
Sbjct: 61  GGDVEKAEVINTVLFVSGINTLLQSLFGSRLPVVMGASYAYLIPALYITFSYRFTYYLHP 120

Query: 121 EQRFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFP 180
             RF+E+M+ +QGALI+AS+ +M++GFFG   I  RFL+PL+A PLV LTG+GL A  FP
Sbjct: 121 HLRFEETMRAIQGALIIASISHMIMGFFGLWRILVRFLSPLSAAPLVILTGVGLLAFAFP 180

Query: 181 QLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYD 240
           QLA+CIE+GLPALIIL++LSQYLPH+ K KR+I ++FA+LFT+AIVW YAEILT  G YD
Sbjct: 181 QLARCIEIGLPALIILIILSQYLPHLFKCKRSICEQFAVLFTIAIVWAYAEILTAAGAYD 240

Query: 241 NRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTF 300
            RP +TQ SCRTDRSGLI+A+PW+ +P+PLQWG P F+  DAFAMMAA++VAI+E+TG+F
Sbjct: 241 KRPDNTQLSCRTDRSGLISASPWVRIPYPLQWGRPSFHGSDAFAMMAATYVAIVETTGSF 300

Query: 301 IAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRV 360
           IAASR+GSAT +PP VLSRGIGWQG+G+LL+G FGT +G  A VEN GLLGLT+ GSRRV
Sbjct: 301 IAASRFGSATHIPPSVLSRGIGWQGIGVLLNGLFGTATGSTALVENTGLLGLTKVGSRRV 360

Query: 361 VQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKF 420
           VQISAGFM+FFS+ GKFGA+LASIPLPI AALYCVLFAYVASAGLGLLQFCNLNSFR+KF
Sbjct: 361 VQISAGFMIFFSIFGKFGAVLASIPLPIFAALYCVLFAYVASAGLGLLQFCNLNSFRNKF 420

Query: 421 ILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCT 480
           ILGFS+F GLSV++YF EYL+ISG  PVHT +++FN +MQVIFSS ATV I+ A+ LDCT
Sbjct: 421 ILGFSIFIGLSVAQYFTEYLFISGRGPVHTRTSAFNVIMQVIFSSAATVGIMAAFLLDCT 480

Query: 481 HSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPS 525
           HS GH++ R+D GRHWW KF  ++ D RT +FY+LP NL+RFFPS
Sbjct: 481 HSYGHASVRRDSGRHWWEKFRVYHTDTRTEEFYALPYNLNRFFPS 525

Arabidopsis thaliana (taxid: 3702)

>sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2	Back alignment and function description

>sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2	Back alignment and function description

>sp\|Q8VZQ5\|NAT8_ARATH Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1	Back alignment and function description

>sp\|Q8RWE9\|NAT5_ARATH Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1	Back alignment and function description

>sp\|Q41760\|LPE1_MAIZE Nucleobase-ascorbate transporter LPE1 OS=Zea mays GN=LPE1 PE=1 SV=2	Back alignment and function description

>sp\|O04472\|NAT10_ARATH Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2	Back alignment and function description

>sp\|Q94C70\|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2	Back alignment and function description

>sp\|Q9SHZ3\|NAT1_ARATH Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GZD4\|NAT3_ARATH Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		526
449465085		530	PREDICTED: nucleobase-ascorbate transpor	0.994	0.986	0.736	0.0
225429021		529	PREDICTED: nucleobase-ascorbate transpor	0.996	0.990	0.727	0.0
356574323		530	PREDICTED: nucleobase-ascorbate transpor	0.988	0.981	0.720	0.0
147862676		557	hypothetical protein VITISV_015553 [Viti	0.996	0.940	0.690	0.0
224103771		533	nucleobase ascorbate transporter [Populu	0.996	0.983	0.721	0.0
449521667		495	PREDICTED: nucleobase-ascorbate transpor	0.939	0.997	0.734	0.0
8569102		529	Identical to permease homolog (At PER-X)	0.994	0.988	0.686	0.0
15222849		526	nucleobase-ascorbate transporter 4 [Arab	0.998	0.998	0.695	0.0
297847326		526	xanthine/uracil permease family protein	0.998	0.998	0.691	0.0
255540763		531	purine permease, putative [Ricinus commu	0.992	0.983	0.649	0.0

>gi\|449465085\|ref\|XP_004150259.1\| PREDICTED: nucleobase-ascorbate transporter 4-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/523 (73%), Positives = 443/523 (84%)

Query: 3   SKPDECQPHPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGG 62
            K DE QPHP+KEQLPG+DFCVSSSPPW E ++LGFQHY VMLGTTV + T +VPLMGGG
Sbjct: 7   QKSDEFQPHPIKEQLPGIDFCVSSSPPWPEVILLGFQHYFVMLGTTVALSTIIVPLMGGG 66

Query: 63  NVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQ 122
           NVEKA++INT LFVAGINTLLQT FGTRLPVV+GGSYAF I +IS+A S RFN Y DP Q
Sbjct: 67  NVEKAEMINTLLFVAGINTLLQTWFGTRLPVVIGGSYAFIIPAISVALSRRFNFYIDPHQ 126

Query: 123 RFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGLYAHGFPQL 182
           RF+ESMK +QGALI+AS   M+IGF G   I  RFL+PL+AVPLVTLTGLGL+A GFPQL
Sbjct: 127 RFRESMKALQGALIVASFLPMIIGFLGLWRIVARFLSPLSAVPLVTLTGLGLFALGFPQL 186

Query: 183 AKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNR 242
           A C+E+GLP L+I+VLLSQY+P +MK KRA+FDRFA++ +VAIVW YAEILT  G Y N+
Sbjct: 187 ANCVEIGLPELVIVVLLSQYVPPLMKGKRALFDRFAVILSVAIVWVYAEILTAAGAYKNK 246

Query: 243 PPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIA 302
            PSTQ SCRTDRSGLI+AA WI  P+P QWG P F+AGD F+MMA++FVA+IESTGTFIA
Sbjct: 247 APSTQFSCRTDRSGLISAASWIKFPYPFQWGRPSFDAGDIFSMMASAFVALIESTGTFIA 306

Query: 303 ASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQ 362
           A+RYGSAT +PP VLSRG+GW G+G  LDG FGTG G  AS ENAGLLGLTR GSRR VQ
Sbjct: 307 AARYGSATHIPPSVLSRGVGWLGVGTFLDGIFGTGVGSTASFENAGLLGLTRVGSRRAVQ 366

Query: 363 ISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFIL 422
           +SAGFMLFFSVLGKFGA+LAS+PLP++AALYCVLFAY+ASAGLG LQFCNLNSFRSKF+L
Sbjct: 367 VSAGFMLFFSVLGKFGAVLASVPLPLMAALYCVLFAYIASAGLGFLQFCNLNSFRSKFVL 426

Query: 423 GFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHS 482
           GFSLF GLSV +YFNEYL+ISGH PVHT +  FNN++QVIFSSPATVA +VA+FLD T  
Sbjct: 427 GFSLFLGLSVPQYFNEYLFISGHGPVHTKARWFNNIVQVIFSSPATVAAVVAFFLDITLM 486

Query: 483 LGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPS 525
             HSATR+D GRHWWGKF  FN D R+ +FYSLP NL+RFFPS
Sbjct: 487 RNHSATRRDSGRHWWGKFYSFNLDTRSEEFYSLPWNLNRFFPS 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225429021\|ref\|XP_002265128.1\| PREDICTED: nucleobase-ascorbate transporter 4 [Vitis vinifera] gi\|296083032\|emb\|CBI22436.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356574323\|ref\|XP_003555298.1\| PREDICTED: nucleobase-ascorbate transporter 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|147862676\|emb\|CAN81484.1\| hypothetical protein VITISV_015553 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224103771\|ref\|XP_002313187.1\| nucleobase ascorbate transporter [Populus trichocarpa] gi\|222849595\|gb\|EEE87142.1\| nucleobase ascorbate transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449521667\|ref\|XP_004167851.1\| PREDICTED: nucleobase-ascorbate transporter 4-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|8569102\|gb\|AAF76447.1\|AC015445_14 Identical to permease homolog (At PER-X) partial cds gb\|U83501 and contains a Xanthine/Uracil Permease PF\|00860 domain. EST gb\|AA712474 comes from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|15222849|ref|NP_175418.1| nucleobase-ascorbate transporter 4 [Arabidopsis thaliana] gi|122064606|sp|P93039.2|NAT4_ARATH RecName: Full=Nucleobase-ascorbate transporter 4; Short=AtNAT4; Short=AtPER gi|15983805|gb|AAL10499.1| At1g49960/F2J10_14 [Arabidopsis thaliana] gi|20466752|gb|AAM20693.1| putative permease [Arabidopsis thaliana] gi|23198258|gb|AAN15656.1| putative permease [Arabidopsis thaliana] gi|332194379|gb|AEE32500.1| nucleobase-ascorbate transporter 4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297847326\|ref\|XP_002891544.1\| xanthine/uracil permease family protein [Arabidopsis lyrata subsp. lyrata] gi\|297337386\|gb\|EFH67803.1\| xanthine/uracil permease family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|255540763\|ref\|XP_002511446.1\| purine permease, putative [Ricinus communis] gi\|223550561\|gb\|EEF52048.1\| purine permease, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		526
TAIR\|locus:2031085		526	AT1G49960 [Arabidopsis thalian	0.998	0.998	0.685	1.1e-199
TAIR\|locus:2170783		532	AT5G62890 [Arabidopsis thalian	0.996	0.984	0.629	3.4e-180
TAIR\|locus:2202700		538	NAT7 "nucleobase-ascorbate tra	0.992	0.970	0.613	3e-179
TAIR\|locus:2158829		528	AT5G49990 [Arabidopsis thalian	0.980	0.977	0.620	4.7e-174
TAIR\|locus:2194631		539	NAT8 "nucleobase-ascorbate tra	0.992	0.968	0.582	1.1e-167
TAIR\|locus:2034104		541	AT1G65550 [Arabidopsis thalian	0.992	0.964	0.544	4.8e-158
TAIR\|locus:2040874		524	AT2G34190 [Arabidopsis thalian	0.988	0.992	0.535	3.7e-151
TAIR\|locus:2060076		520	AT2G05760 [Arabidopsis thalian	0.973	0.984	0.522	1.8e-142
TAIR\|locus:2066190		551	PDE135 "pigment defective embr	0.975	0.931	0.472	5.9e-128
TAIR\|locus:2145507		419	AT5G25420 [Arabidopsis thalian	0.346	0.434	0.560	1.7e-86

TAIR\|locus:2031085 AT1G49960 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1933 (685.5 bits), Expect = 1.1e-199, P = 1.1e-199
 Identities = 360/525 (68%), Positives = 438/525 (83%)

Query:     1 MASKPDECQPHPVKEQLPGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMG 60
             MA+K D+  P PVK+QLPGV+FCVSSSP W E ++LGFQHY+VMLGTTVIIP+ LVPLMG
Sbjct:     1 MATKTDDFAPFPVKDQLPGVEFCVSSSPNWPEGIVLGFQHYIVMLGTTVIIPSILVPLMG 60

Query:    61 GGNVEKAQVINTSLFVAGINTLLQTSFGTRLPVVMGGSYAFNITSISIAASNRFNIYTDP 120
             GG+VEKA+VINT LFV+GINTLLQ+ FG+RLPVVMG SYA+ I ++ I  S RF  Y  P
Sbjct:    61 GGDVEKAEVINTVLFVSGINTLLQSLFGSRLPVVMGASYAYLIPALYITFSYRFTYYLHP 120

Query:   121 EQRFKESMKTMQGALIMASLFNMLXXXXXXXXXXXRFLNPLAAVPLVTLTGLGLYAHGFP 180
               RF+E+M+ +QGALI+AS+ +M+           RFL+PL+A PLV LTG+GL A  FP
Sbjct:   121 HLRFEETMRAIQGALIIASISHMIMGFFGLWRILVRFLSPLSAAPLVILTGVGLLAFAFP 180

Query:   181 QLAKCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYD 240
             QLA+CIE+GLPALIIL++LSQYLPH+ K KR+I ++FA+LFT+AIVW YAEILT  G YD
Sbjct:   181 QLARCIEIGLPALIILIILSQYLPHLFKCKRSICEQFAVLFTIAIVWAYAEILTAAGAYD 240

Query:   241 NRPPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTF 300
              RP +TQ SCRTDRSGLI+A+PW+ +P+PLQWG P F+  DAFAMMAA++VAI+E+TG+F
Sbjct:   241 KRPDNTQLSCRTDRSGLISASPWVRIPYPLQWGRPSFHGSDAFAMMAATYVAIVETTGSF 300

Query:   301 IAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRV 360
             IAASR+GSAT +PP VLSRGIGWQG+G+LL+G FGT +G  A VEN GLLGLT+ GSRRV
Sbjct:   301 IAASRFGSATHIPPSVLSRGIGWQGIGVLLNGLFGTATGSTALVENTGLLGLTKVGSRRV 360

Query:   361 VQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKF 420
             VQISAGFM+FFS+ GKFGA+LASIPLPI AALYCVLFAYVASAGLGLLQFCNLNSFR+KF
Sbjct:   361 VQISAGFMIFFSIFGKFGAVLASIPLPIFAALYCVLFAYVASAGLGLLQFCNLNSFRNKF 420

Query:   421 ILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCT 480
             ILGFS+F GLSV++YF EYL+ISG  PVHT +++FN +MQVIFSS ATV I+ A+ LDCT
Sbjct:   421 ILGFSIFIGLSVAQYFTEYLFISGRGPVHTRTSAFNVIMQVIFSSAATVGIMAAFLLDCT 480

Query:   481 HSLGHSATRQDCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPS 525
             HS GH++ R+D GRHWW KF  ++ D RT +FY+LP NL+RFFPS
Sbjct:   481 HSYGHASVRRDSGRHWWEKFRVYHTDTRTEEFYALPYNLNRFFPS 525

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR\|locus:2170783 AT5G62890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202700 NAT7 "nucleobase-ascorbate transporter 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158829 AT5G49990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2194631 NAT8 "nucleobase-ascorbate transporter 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034104 AT1G65550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040874 AT2G34190 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060076 AT2G05760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066190 PDE135 "pigment defective embryo 135" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145507 AT5G25420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41760	LPE1_MAIZE	No assigned EC number	0.5842	0.9923	0.9905	N/A	no
P93039	NAT4_ARATH	No assigned EC number	0.6952	0.9980	0.9980	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		526
pfam00860		389	pfam00860, Xan_ur_permease, Permease family	2e-53
COG2233		451	COG2233, UraA, Xanthine/uracil permeases [Nucleoti	2e-45
TIGR03173		406	TIGR03173, pbuX, xanthine permease	6e-44
TIGR00801		412	TIGR00801, ncs2, uracil-xanthine permease	5e-33
TIGR03616		429	TIGR03616, RutG, pyrimidine utilization transport	5e-12
PRK10720		428	PRK10720, PRK10720, uracil transporter; Provisiona	5e-11

>gnl\|CDD\|216158 pfam00860, Xan_ur_permease, Permease family	Back alignment and domain information

 Score =  185 bits (471), Expect = 2e-53
 Identities = 115/414 (27%), Positives = 186/414 (44%), Gaps = 37/414 (8%)

Query: 32  EAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQT-SFGTR 90
           + ++LG QH L M   T+++P  +   +G G  + AQ+I+ +   +GI TLLQT  FG R
Sbjct: 2   QLLLLGLQHLLAMFAATIVVPLLVGDALGLGAEDLAQLISATFLASGIGTLLQTLIFGIR 61

Query: 91  LPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFFGF 150
           LP+ +G S+AF    +       + I          ++  + GA+++A +   LI F G 
Sbjct: 62  LPIYLGSSFAFVTALMIAIGGADWGI----------ALAGLFGAVLVAGVLFTLISFTGL 111

Query: 151 GTIFGRFLNPLAAVPLVTLTGLGLY--------AHGFPQLAKCIEVGLPALIILVLLSQY 202
                R   P+   P+V L GL L                   + +     + +V+L+  
Sbjct: 112 RGRLARLFPPVVTGPVVLLIGLSLAPIAVKGAGGGWAIADGLTVGLLDLLGLAVVVLAVI 171

Query: 203 LPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCRTDRSGLITAAP 262
           L  +    +  F +  IL  +   W  A  + +                   S  +  AP
Sbjct: 172 LL-LSVFLKGFFRQGPILIGIIAGWLLALFMGIVNF----------------SPEVMDAP 214

Query: 263 WIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIG 322
           W  +P P  +G PLFN G    ++A + VAI+ESTG   A ++       P   L RG+ 
Sbjct: 215 WFQLPHPFPFGTPLFNPGLILTVLAVALVAIVESTGDIRAVAKVSGRDLKPKPDLRRGLL 274

Query: 323 WQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILA 382
             GL  LL G FG         EN G++ LT+  SRRV   +   ++   ++ KF A+ +
Sbjct: 275 ADGLATLLSGLFGA-FPTTTYAENIGVVALTKVYSRRVGVTAGVILILLGLIPKFAALFS 333

Query: 383 SIPLPIVAALYCVLFAYVASAGLGLLQFCNLNSFRSKFILGFSLFTGLSVSRYF 436
           SIP P++  +  V+F  +A +G+  L   +L+S R+  I+  SL  GL +S   
Sbjct: 334 SIPSPVLGGVMLVMFGMIAGSGVSNLITVDLDSARNLLIIAVSLVLGLGISTVP 387

This family includes permeases for diverse substrates such as xanthine, uracil, and vitamin C. However many members of this family are functionally uncharacterized and may transport other substrates. Members of this family have ten predicted transmembrane helices. Length = 389

>gnl\|CDD\|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|234136 TIGR03173, pbuX, xanthine permease	Back alignment and domain information

>gnl\|CDD\|233133 TIGR00801, ncs2, uracil-xanthine permease	Back alignment and domain information

>gnl\|CDD\|132655 TIGR03616, RutG, pyrimidine utilization transport protein G	Back alignment and domain information

>gnl\|CDD\|236744 PRK10720, PRK10720, uracil transporter; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		526
KOG1292		510	consensus Xanthine/uracil transporters [Nucleotide	100.0
COG2233		451	UraA Xanthine/uracil permeases [Nucleotide transpo	100.0
PRK11412		433	putative uracil/xanthine transporter; Provisional	100.0
PRK10720		428	uracil transporter; Provisional	100.0
TIGR03616		429	RutG pyrimidine utilization transport protein G. T	100.0
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	100.0
TIGR03173		406	pbuX xanthine permease. All the seed members of th	100.0
PF00860		389	Xan_ur_permease: Permease family; InterPro: IPR006	100.0
COG2252		436	Xanthine/uracil/vitamin C permease [Nucleotide tra	99.95
TIGR00843		395	benE benzoate transporter. The benzoate transporte	99.95
COG0659		554	SUL1 Sulfate permease and related transporters (MF	99.93
PF03594		378	BenE: Benzoate membrane transport protein; InterPr	99.91
COG3135		402	BenE Uncharacterized protein involved in benzoate	99.88
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	99.87
PRK11660		568	putative transporter; Provisional	99.85
PF00916		280	Sulfate_transp: Sulfate transporter family; InterP	99.63
KOG0236		665	consensus Sulfate/bicarbonate/oxalate exchanger SA	99.58
TIGR00834		900	ae anion exchange protein. They preferentially cat	98.6
KOG1172		876	consensus Na+-independent Cl/HCO3 exchanger AE1 an	98.45
PF11840		492	DUF3360: Protein of unknown function (DUF3360); In	97.84
PF00955		510	HCO3_cotransp: HCO3- transporter family Only parti	97.19
COG0659		554	SUL1 Sulfate permease and related transporters (MF	88.4
TIGR00843		395	benE benzoate transporter. The benzoate transporte	86.44
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	84.82

>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.7e-95  Score=751.83  Aligned_cols=498  Identities=56%  Similarity=1.013  Sum_probs=473.5

Q ss_pred             CccccCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcCCChHHH-HHHHHHHHHHHHHHHHHHHHhcCCcceEEecc
Q 037190           20 VDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEK-AQVINTSLFVAGINTLLQTSFGTRLPVVMGGS   98 (526)
Q Consensus        20 ~~y~~~~~pp~~~~~~~GlQh~l~m~~~~i~~Plii~~a~gl~~~~~-~~li~~~l~~sGi~Tllq~~~G~rlPiv~G~S   98 (526)
                      +.|++||.|||...+++|+||++.|+++++++|.+++.++|.+++|. +++||++++++||.|++|++||.|||+++|+|
T Consensus         1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S   80 (510)
T KOG1292|consen    1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS   80 (510)
T ss_pred             CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence            46999999999999999999999999999999999999999999988 99999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhccCcccCCCcch----hhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhCchhHHHHHHHHHHHh
Q 037190           99 YAFNITSISIAASNRFNIYTDPEQ----RFKESMKTMQGALIMASLFNMLIGFFGFGTIFGRFLNPLAAVPLVTLTGLGL  174 (526)
Q Consensus        99 f~~l~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~ga~lvaGli~~llg~~g~~~~l~~~~pp~V~G~vi~lIGl~l  174 (526)
                      |+|++|..++.....+.+..++++    .|.+.+++++||+++++++++++|++|+.+++.|++.|+.+.+++.++|+++
T Consensus        81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l  160 (510)
T KOG1292|consen   81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL  160 (510)
T ss_pred             eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence            999999999988666656444444    8999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhHHHHHHHHHHHHHh--hhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 037190          175 YAHGFPQLAKCIEVGLPALIILVLLSQY--LPHVMK--SKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSC  250 (526)
Q Consensus       175 ~~~g~~~~~~~~~v~~~~l~~~i~l~~~--~~~~~~--~~~~~~r~~avLigivvG~~~a~~lg~~g~~~~~~~~~~~~~  250 (526)
                      +..+.+.+++||.++++.+++++++++|  +++..+  .+++.++++++++++.+.|++|++++..|.+|.++..++.+|
T Consensus       161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~  240 (510)
T KOG1292|consen  161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC  240 (510)
T ss_pred             HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence            9999999999999999999999999999  543222  346688999999999999999999999999998877789999


Q ss_pred             ccCCCCcCCCCCcccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcCCCcceehhhhhhhH
Q 037190          251 RTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLL  330 (526)
Q Consensus       251 ~~d~~~~i~~a~~~~~P~~~~fg~P~f~~~~il~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~~il  330 (526)
                      |+|.+..++++||+.+|+|+|||.|+||.+....++...++.++|++|++.+++|.+.++.++++.+|||+..||+++++
T Consensus       241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL  320 (510)
T KOG1292|consen  241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL  320 (510)
T ss_pred             cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence            99998888999999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             hhhcCCCCCCccccchhhhhhhccCCCchHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhchhccc
Q 037190          331 DGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQF  410 (526)
Q Consensus       331 aglfG~~p~~t~s~~n~g~i~~Tgv~SR~~~~~~g~~lillgl~pk~~~li~~IP~~Vlggvli~~f~~i~~~Gi~~l~~  410 (526)
                      +|+||+..++|+|+||+|+++.||++|||++.++|++|+++|++.||++++++||.|++||+++++|+++...|+++++.
T Consensus       321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf  400 (510)
T KOG1292|consen  321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF  400 (510)
T ss_pred             HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccEEeehHHHHhhhhhhHHhhhhhhhcCCCCccccccchhhHHHHHhccchhHHHHHHHHHhhhcCCCCCCccc
Q 037190          411 CNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCTHSLGHSATRQ  490 (526)
Q Consensus       411 ~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~sgi~~g~i~ai~Ln~~~~~~~~~~~~  490 (526)
                      +|+++.||.+|+|+|+++|+.+|.+|+++     .+|++++.+|++++++.++++.+.+|+++|++||+++|.   .+||
T Consensus       401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~g---atr~  472 (510)
T KOG1292|consen  401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPG---ATRE  472 (510)
T ss_pred             eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCC---CChH
Confidence            99999999999999999999999999994     568999999999999999999999999999999999993   2899


Q ss_pred             cccccccccccccCCCCCCCccccCCcccccCCCC
Q 037190          491 DCGRHWWGKFLYFNRDARTSDFYSLPCNLSRFFPS  525 (526)
Q Consensus       491 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  525 (526)
                      |||++||+++++.+.|.|++++|+||+++||+||+
T Consensus       473 ~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~  507 (510)
T KOG1292|consen  473 QRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPR  507 (510)
T ss_pred             hcCCcchhccccccCCccccccccCcHHHHhhccc
Confidence            99999999999999999999999999999999997

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK11412 putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>TIGR03616 RutG pyrimidine utilization transport protein G	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

>TIGR03173 pbuX xanthine permease	Back alignment and domain information

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []	Back alignment and domain information

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]	Back alignment and domain information

>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related	Back alignment and domain information

>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00834 ae anion exchange protein	Back alignment and domain information

>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		526
3qe7_A		429	Crystal Structure Of Uracil Transporter--Uraa Lengt		1e-04

>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa Length = 429

Back alignment and structure

Iteration: 1

Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 1/145 (0%) Query: 275 PLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIGWQGLGLLLDGAF 334 P F ++ A+ V I E G + + + L R + GL ++ G F Sbjct: 221 PRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFF 280 Query: 335 GTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYC 394 G+ EN G++ +TR S V+ +A F + S +GK A + IPLP++ + Sbjct: 281 GSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSL 339 Query: 395 VLFAYVASAGLGLLQFCNLNSFRSK 419 +L+ + ++G+ +L ++ +++ Sbjct: 340 LLYGVIGASGIRVLIESKVDYNKAQ 364

PyMOL of 3qe7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		526
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	2e-42

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli} Length = 429	Back alignment and structure

 Score =  155 bits (395), Expect = 2e-42
 Identities = 98/435 (22%), Positives = 159/435 (36%), Gaps = 73/435 (16%)

Query: 28  PPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTS- 86
           PP  + + L  QH   M G TV     LVP++   N        T L   GI TLL    
Sbjct: 12  PPLLQTIPLSLQHLFAMFGATV-----LVPVLFHIN------PATVLLFNGIGTLLYLFI 60

Query: 87  FGTRLPVVMGGSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIG 146
              ++P  +G S+AF    + +                    +   G  IM  +   L+ 
Sbjct: 61  CKGKIPAYLGSSFAFISPVLLLLPLG---------------YEVALGGFIMCGVLFCLVS 105

Query: 147 FF----GFGTIFGRFLNPLAAVPLVTLTGLGL------YAHGFPQLA-----KCIEVGLP 191
           F     G G +      P A   +V + GL L       A   P        K I + + 
Sbjct: 106 FIVKKAGTGWL-DVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISIT 164

Query: 192 ALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNRPPSTQTSCR 251
            L + VL S          R       IL  + ++ GYA +    G+ D  P        
Sbjct: 165 TLAVTVLGSVLF-------RGFLAIIPIL--IGVLVGYA-LSFAMGIVDTTP-------- 206

Query: 252 TDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATP 311
                 I  A W  +P       P F       ++ A+ V I E  G  +  +       
Sbjct: 207 ------IINAHWFALP---TLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDL 257

Query: 312 MPPCVLSRGIGWQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFF 371
           +    L R +   GL  ++ G FG  +      EN G++ +TR  S  V+  +A F +  
Sbjct: 258 LRDPGLHRSMFANGLSTVISGFFG-STPNTTYGENIGVMAITRVYSTWVIGGAAIFAILL 316

Query: 372 SVLGKFGAILASIPLPIVAALYCVLFAYVASAGLGLLQF--CNLNSFRSKFILGFSLFTG 429
           S +GK  A +  IPLP++  +  +L+  + ++G+ +L     + N  ++  +    L  G
Sbjct: 317 SCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIG 376

Query: 430 LSVSRYFNEYLYISG 444
           +S ++       + G
Sbjct: 377 VSGAKVNIGAAELKG 391

PyMOL of 3qe7

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		526
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	100.0

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=3.7e-70  Score=580.61  Aligned_cols=400  Identities=24%  Similarity=0.359  Sum_probs=349.6

Q ss_pred             CCCccccCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCcceEEe
Q 037190           18 PGVDFCVSSSPPWSEAMILGFQHYLVMLGTTVIIPTTLVPLMGGGNVEKAQVINTSLFVAGINTLLQTSF-GTRLPVVMG   96 (526)
Q Consensus        18 ~~~~y~~~~~pp~~~~~~~GlQh~l~m~~~~i~~Plii~~a~gl~~~~~~~li~~~l~~sGi~Tllq~~~-G~rlPiv~G   96 (526)
                      .|+.|++|||||+++++++|+||+++|+++++++|+++    |+|+       +++++++|++|++|+++ |+|+|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G   70 (429)
T 3qe7_A            2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG   70 (429)
T ss_dssp             --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred             CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence            45789999999999999999999999999999999997    8887       47999999999999986 899999999


Q ss_pred             cchhHHHHHHHHHhccCcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHHhhCchhHHHHHHHHHHH
Q 037190           97 GSYAFNITSISIAASNRFNIYTDPEQRFKESMKTMQGALIMASLFNMLIGFF--GFG-TIFGRFLNPLAAVPLVTLTGLG  173 (526)
Q Consensus        97 ~Sf~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~lvaGli~~llg~~--g~~-~~l~~~~pp~V~G~vi~lIGl~  173 (526)
                      +||+|++++..+.. +              +|++++|+++++|+++++++++  ++. +|++|+|||+|+|.++++||++
T Consensus        71 ~sfafi~~~~~i~~-~--------------g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~  135 (429)
T 3qe7_A           71 SSFAFISPVLLLLP-L--------------GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE  135 (429)
T ss_dssp             ECGGGHHHHHHHGG-G--------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHh-c--------------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence            99999999887654 2              6899999999999999999987  543 6999999999999999999999


Q ss_pred             hhhhhccccc-----------hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 037190          174 LYAHGFPQLA-----------KCIEVGLPALIILVLLSQYLPHVMKSKRAIFDRFAILFTVAIVWGYAEILTLTGLYDNR  242 (526)
Q Consensus       174 l~~~g~~~~~-----------~~~~v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~avLigivvG~~~a~~lg~~g~~~~~  242 (526)
                      +++.++++.+           .++.+++.+++++++++++.|       +++|++++|+|+++||++++.+|.       
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~-------  201 (429)
T 3qe7_A          136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI-------  201 (429)
T ss_dssp             HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC-------
Confidence            9998776532           357788888888888877654       568999999999999999999975       


Q ss_pred             CCCCCCccccCCCCcCCCCCcccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcCCCccee
Q 037190          243 PPSTQTSCRTDRSGLITAAPWIMVPFPLQWGPPLFNAGDAFAMMAASFVAIIESTGTFIAASRYGSATPMPPCVLSRGIG  322 (526)
Q Consensus       243 ~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~f~~~~il~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~  322 (526)
                               +|++. +.++||+++|.   |+.|+||++.+..+++++++.++|++|++.++++.++++.+++++.||++.
T Consensus       202 ---------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~  268 (429)
T 3qe7_A          202 ---------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF  268 (429)
T ss_dssp             ---------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred             ---------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence                     35443 56789999995   577999999999999999999999999999999999876556789999999


Q ss_pred             hhhhhhhHhhhcCCCCCCccccchhhhhhhccCCCchHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 037190          323 WQGLGLLLDGAFGTGSGCAASVENAGLLGLTRNGSRRVVQISAGFMLFFSVLGKFGAILASIPLPIVAALYCVLFAYVAS  402 (526)
Q Consensus       323 ~dGl~~ilaglfG~~p~~t~s~~n~g~i~~Tgv~SR~~~~~~g~~lillgl~pk~~~li~~IP~~Vlggvli~~f~~i~~  402 (526)
                      +||++|+++|+||+.|.|+++ ||+|+++.||++||++.+++|+++++++++||++++++.||.||+||+++++|+++.+
T Consensus       269 adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~  347 (429)
T 3qe7_A          269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA  347 (429)
T ss_dssp             HHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999987755 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhc--ccccCCCCccEEeehHHHHhhhhhhHHhhhhhhhcCCCCccccccchhhHHHHHhccchhHHHHHHHHHhhh
Q 037190          403 AGLGLL--QFCNLNSFRSKFILGFSLFTGLSVSRYFNEYLYISGHDPVHTASTSFNNMMQVIFSSPATVAIIVAYFLDCT  480 (526)
Q Consensus       403 ~Gi~~l--~~~~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~sgi~~g~i~ai~Ln~~  480 (526)
                      +|+|++  +++|++++||.+|+++++.+|++...                    +|  ++.+..||+++|+++|++||++
T Consensus       348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~  405 (429)
T 3qe7_A          348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLI  405 (429)
T ss_dssp             HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHH
Confidence            999999  99999988999999999999997421                    11  2346789999999999999999


Q ss_pred             cCCCCCCcccccc
Q 037190          481 HSLGHSATRQDCG  493 (526)
Q Consensus       481 ~~~~~~~~~~~~g  493 (526)
                      +|++++.+++|-.
T Consensus       406 l~~~~~~~~~~~~  418 (429)
T 3qe7_A          406 FKLISVLRPEEVV  418 (429)
T ss_dssp             HTCCC--------
T ss_pred             hcCccccCCcceE
Confidence            9976655544444

PyMOL of 3qe7

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00