Citrus Sinensis ID: 037236
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WN60 | 970 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.941 | 0.577 | 0.0 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.849 | 0.910 | 0.390 | 1e-178 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.933 | 0.927 | 0.359 | 1e-165 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.886 | 0.958 | 0.372 | 1e-163 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.912 | 0.817 | 0.350 | 1e-160 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.836 | 0.985 | 0.358 | 1e-155 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.683 | 0.938 | 0.400 | 1e-151 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.857 | 0.941 | 0.349 | 1e-150 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.899 | 0.865 | 0.338 | 1e-148 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.811 | 0.887 | 0.361 | 1e-146 |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/925 (57%), Positives = 698/925 (75%), Gaps = 12/925 (1%)
Query: 30 HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 81
HFL+ I+ CE + L+K+ +QE + + + ++EA G+LLQA G KDIE+G
Sbjct: 45 HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 103
Query: 82 KRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 141
+++H+L+S ST+ ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 104 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 163
Query: 142 NELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVF 201
NELY +VL F+E++S T+L PD+FT+PCVIKAC G++DV G VHG+ K GL+ DVF
Sbjct: 164 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 223
Query: 202 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMM--G 259
V NAL++ YG FV + ++LF++MPERNLVSWNS+I S+NGFS ESF LL +MM
Sbjct: 224 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283
Query: 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFL 319
+ F+PDVAT+VTVLPVCA E + LG VHG AVKL L +EL++NNAL+DMY+KCG +
Sbjct: 284 GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCI 343
Query: 320 SEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLT 379
+ AQ++F NNNKNVVSWNT++G FS GD GTFD+LR+M E++K +EVT+LN +
Sbjct: 344 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 403
Query: 380 SCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSS 439
C +S L SLKELH YSL+ F +ELVANAFV +YAKCGS A+ VFHG+ S+TV+S
Sbjct: 404 VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS 463
Query: 440 WNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVI 499
WNALI G+AQ+ D +LD LQM S L PD F++ SL+ AC+ LKSL GKE+HGF+I
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 500 RNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIV 559
RN LE D F +S+LSLY+HC + + + LFD MEDKSLVSWNT+I GY QN P A+
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619
+FR+M G+Q C IS++ + ACS L +LRLG+E H YALK +L +DAF+ACS+IDMYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643
Query: 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679
K G + QS +VF+ LK+K SWNA+I G+GIHG KEAI+LFE+M GH PD TF+G
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII-EMPE 738
+L ACNH+GL+ GL+Y QM+ +KP L+HYACV+DMLGRAG+LD A +++ EM E
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798
EAD GIW SLL SCR + L+MGEKVA L ELEP+K ENYVL+SN+YAG KW+DVR +
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 799 RQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYT 858
RQRM E L+K+AGCSWIEL + SFVVG+ +EEI+ +W LE +ISK+GY+P T
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 883
Query: 859 EAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKV 918
+V H+L EEEK+ LRGHSEKLA+++GL+KT++ T+RV KNLRICVDCHNAAKLISKV
Sbjct: 884 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 943
Query: 919 AEREIVIRDNKRFHHFRDGVCSCGD 943
EREIV+RDNKRFHHF++GVCSCGD
Sbjct: 944 MEREIVVRDNKRFHHFKNGVCSCGD 968
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 328/840 (39%), Positives = 514/840 (61%), Gaps = 30/840 (3%)
Query: 125 KTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFG 184
++R+ W L+ ++ L + + +V+++ +KPDN+ FP ++KA + D+ G
Sbjct: 58 QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIV-LGIKPDNYAFPALLKAVADLQDMELG 116
Query: 185 SGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSE 243
+H K G + V V+N L+ +Y KC + K+F+ + ERN VSWNS+I SS
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI--SSL 174
Query: 244 NGFSCESFDLLIKMMGC--EEGFIPDVATVVTVLPVCAG----EGNVDLGILVHGLAVKL 297
F E +++ ++ C +E P T+V+V+ C+ EG + +G VH ++
Sbjct: 175 CSF--EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEG-LMMGKQVHAYGLRK 231
Query: 298 GLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLL 357
G ++N LV MY K G L+ +++L +++V+WNT++ + + + L
Sbjct: 232 GELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290
Query: 358 RKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHG-FDNDELVANAFVVAY 416
R+M + E ++P+E T+ +VL +CS L + KELH Y+L++G D + V +A V Y
Sbjct: 291 REMVL--EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348
Query: 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS-DLEPDLFSI 475
C +S VF GM R + WNA+I GY+QN +AL F+ M S L + ++
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408
Query: 476 GSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED 535
++ AC + R + IHGFV++ GL+ D F +L+ +Y K A +F +MED
Sbjct: 409 AGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMED 468
Query: 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFS-----------IGVQPCEISIVSILSACS 584
+ LV+WNTMI GY ++ +A++L +M + + ++P I++++IL +C+
Sbjct: 469 RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCA 528
Query: 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNA 644
LSAL GKE H YA+K L D V +++DMYAKCGCL+ SR+VFD++ K+V +WN
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588
Query: 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLH 704
II +G+HG G+EAI+L M+ G KP+ TF+ + AC+H+G+V+ GL+ F M+ +
Sbjct: 589 IIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDY 648
Query: 705 AVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEK 763
V+P +HYACVVD+LGRAG++ +A++L+ MP + + AG WSSLL + R + L++GE
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEI 708
Query: 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIH 823
A+ L++LEP+ A +YVL++NIY+ + WD +R+ MKE+G++KE GCSWIE G +H
Sbjct: 709 AAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
Query: 824 SFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAI 883
FV GD+ HP+ E++ G L E++ K GY P T VLH +EE+EK +L GHSEKLAI
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828
Query: 884 SFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
+FG+L T+ +RV KNLR+C DCH A K ISK+ +REI++RD +RFH F++G CSCGD
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 325/904 (35%), Positives = 515/904 (56%), Gaps = 14/904 (1%)
Query: 45 LNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISAS-TQFSNDFIINTR 103
L +A L + +N+ + EA +L+ CG + + G+++H I + F DF+ +
Sbjct: 64 LTEAFQRLDVSENNSPV-EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAG-K 121
Query: 104 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKP 163
L+ MY CG D+ +VFD + R F WN ++ + N L+++ + E P
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM--RVEGVP 179
Query: 164 DNFT-FPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKL 222
+ FP ++KAC + D+ GS +H + K+G F+ NAL++MY K + +L
Sbjct: 180 LGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRL 239
Query: 223 FEVMPER-NLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGE 281
F+ E+ + V WNSI+ S +G S E+ +L +M G P+ T+V+ L C G
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMH--MTGPAPNSYTIVSALTACDGF 297
Query: 282 GNVDLGILVHGLAVKLGL-TRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTI 340
LG +H +K + EL V NAL+ MY +CG + +A+ + + NN +VV+WN++
Sbjct: 298 SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 357
Query: 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRH 400
I + + M K +EV++ +++ + S LL+ ELH Y ++H
Sbjct: 358 IKGYVQNLMYKEALEFFSDMIAAGH--KSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 415
Query: 401 GFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYF 460
G+D++ V N + Y+KC F M + + SW +I GYAQN H++AL+ F
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475
Query: 461 LQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHC 520
+ +E D +GS++ A + LKS+ KEIH ++R GL D+ L+ +Y C
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DTVIQNELVDVYGKC 534
Query: 521 EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580
A +F+ ++ K +VSW +MI+ + N EA+ LFRRM G+ ++++ IL
Sbjct: 535 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 594
Query: 581 SACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT 640
SA + LSAL G+E HCY L+ + +A +++DMYA CG L+ ++ VFDR++ K +
Sbjct: 595 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 654
Query: 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQM 700
+ ++I +G+HG GK A+ELF+KM PD +F+ +L AC+HAGL++ G + M
Sbjct: 655 QYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIM 714
Query: 701 QKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKM 760
+ + ++P EHY C+VDMLGRA + +AF+ + M E A +W +LL +CR++ ++
Sbjct: 715 EHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEI 774
Query: 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGG 820
GE A+ LLELEP N VLVSN++A +W+DV +R +MK G++K GCSWIE+ G
Sbjct: 775 GEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDG 834
Query: 821 NIHSFVVGDNMHPEWEEIRGMWGRLEEQISK-IGYKPYTEAVLHELEEEEKVNILRGHSE 879
+H F D HPE +EI + ++ + +GY T+ VLH ++E EKV +L GHSE
Sbjct: 835 KVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSE 894
Query: 880 KLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVC 939
++AI++GLL+T LR+ KNLR+C DCH KL+SK+ R+IV+RD RFHHF G+C
Sbjct: 895 RIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLC 954
Query: 940 SCGD 943
SCGD
Sbjct: 955 SCGD 958
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 326/874 (37%), Positives = 502/874 (57%), Gaps = 29/874 (3%)
Query: 82 KRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSL-KTRNLFQWNALVSGFT 140
+R+H L+ + S+DF + +LI YS P S VF + +N++ WN+++ F+
Sbjct: 24 RRIHALVISLGLDSSDFF-SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFS 82
Query: 141 KNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDV 200
KN L+P+ L + +L ++++ PD +TFP VIKAC G+ D G V+ MG D+
Sbjct: 83 KNGLFPEALEFYGKL-RESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 201 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260
FV NAL+ MY + + ++F+ MP R+LVSWNS+I G S +G+ E+ ++ ++
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN- 200
Query: 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLS 320
+PD TV +VLP V G +HG A+K G+ ++VNN LV MY K +
Sbjct: 201 -SWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPT 259
Query: 321 EAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEE----------EMKPN 370
+A+ +FD+ + ++ VS+NT+I CG K++M EE + KP+
Sbjct: 260 DARRVFDEMDVRDSVSYNTMI---------CGYL----KLEMVEESVRMFLENLDQFKPD 306
Query: 371 EVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFH 430
+TV +VL +C +L K ++ Y L+ GF + V N + YAKCG I+A +VF+
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFN 366
Query: 431 GMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490
M+ + SWN++I GY Q+GD ++A+ F M + + D + LI T L L
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKF 426
Query: 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQ 550
GK +H I++G+ D +L+ +Y C + + +F M V+WNT+I+ +
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVR 486
Query: 551 NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFV 610
+ + +M V P + + L C+ L+A RLGKE HC L+ ++ +
Sbjct: 487 FGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546
Query: 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670
++I+MY+KCGCLE S RVF+R+ +DV +W +I +G++G G++A+E F M G
Sbjct: 547 GNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGI 606
Query: 671 KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730
PD+ F+ I+ AC+H+GLV+ GL F +M+ + + P +EHYACVVD+L R+ K+ A
Sbjct: 607 VPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAE 666
Query: 731 KLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790
+ I MP + DA IW+S+LR+CRT G ++ E+V++ ++EL PD +L SN YA
Sbjct: 667 EFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALR 726
Query: 791 KWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQIS 850
KWD V ++R+ +K++ + K G SWIE+G N+H F GD+ P+ E I L ++
Sbjct: 727 KWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMA 786
Query: 851 KIGYKPYTEAVLHEL-EEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCH 909
K GY P V L EEEEK ++ GHSE+LAI+FGLL T L+V KNLR+C DCH
Sbjct: 787 KEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCH 846
Query: 910 NAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
KLISK+ REI++RD RFH F+DG CSC D
Sbjct: 847 EVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/877 (35%), Positives = 494/877 (56%), Gaps = 7/877 (0%)
Query: 68 LLQAC-GHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT 126
+L+AC G ++ +++H I + + N LI +YS GF +RRVFD L+
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNP-LIDLYSRNGFVDLARRVFDGLRL 250
Query: 127 RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186
++ W A++SG +KNE + + +F ++ + P + F V+ AC I + G
Sbjct: 251 KDHSSWVAMISGLSKNECEAEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEIGEQ 309
Query: 187 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGF 246
+HG+ K+G D +V NAL+++Y + +F M +R+ V++N++I G S+ G+
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 369
Query: 247 SCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVN 306
++ +L +M +G PD T+ +++ C+ +G + G +H KLG +
Sbjct: 370 GEKAMELFKRMH--LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE 427
Query: 307 NALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366
AL+++YAKC + A F + +NVV WN ++ A+ + D+ +F + R+MQ+ EE
Sbjct: 428 GALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI--EE 485
Query: 367 MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426
+ PN+ T ++L +C +L +++H ++ F + V + + YAK G +A
Sbjct: 486 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAW 545
Query: 427 NVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLK 486
++ + V SW +I GY Q KAL F QM + D + + + AC L+
Sbjct: 546 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605
Query: 487 SLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIA 546
+L G++IH +G D +L++LY C K + + F++ E ++WN +++
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN 606
G+ Q+ EA+ +F RM G+ + S + A S+ + ++ GK+ H K +
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666
+ V ++I MYAKCG + + + F + K+ SWNAII + HG+G EA++ F++M+
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMI 785
Query: 667 ALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726
+P+ T VG+L AC+H GLV+ G+ YF M + + PK EHY CVVDML RAG L
Sbjct: 786 HSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLL 845
Query: 727 DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786
A + I EMP + DA +W +LL +C + +++GE A LLELEP+ + YVL+SN+Y
Sbjct: 846 SRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 905
Query: 787 AGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLE 846
A S+KWD + RQ+MKE+G++KE G SWIE+ +IHSF VGD HP +EI + L
Sbjct: 906 AVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLT 965
Query: 847 EQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICV 906
++ S+IGY ++L+EL+ E+K I+ HSEKLAISFGLL + + V KNLR+C
Sbjct: 966 KRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCN 1025
Query: 907 DCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
DCH K +SKV+ REI++RD RFHHF G CSC D
Sbjct: 1026 DCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD 1062
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 549 bits (1414), Expect = e-155, Method: Compositional matrix adjust.
Identities = 290/808 (35%), Positives = 476/808 (58%), Gaps = 11/808 (1%)
Query: 139 FTKNELYPDVLSIFVELLSDTELKPDN-FTFPC--VIKACGGIADVSFGSGVHGMAAKMG 195
F+ P+ S LS+ P N + P +++ C + ++ + + K G
Sbjct: 8 FSTVPQIPNPPSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELR---QILPLVFKNG 64
Query: 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLI 255
L + F L++++ + V+E ++FE + + V +++++ G ++ ++ +
Sbjct: 65 LYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFV 124
Query: 256 KMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAK 315
+M + P V +L VC E + +G +HGL VK G + +L L +MYAK
Sbjct: 125 RMR--YDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAK 182
Query: 316 CGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVL 375
C ++EA+ +FD+ +++VSWNTI+ +S G ++++ M EE +KP+ +T++
Sbjct: 183 CRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC--EENLKPSFITIV 240
Query: 376 NVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR 435
+VL + S + KE+HGY++R GFD+ ++ A V YAKCGS +A +F GM R
Sbjct: 241 SVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLER 300
Query: 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIH 495
V SWN++I Y QN + +A+ F +M ++P S+ + AC L L RG+ IH
Sbjct: 301 NVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360
Query: 496 GFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPV 555
+ GL+ + SL+S+Y C++ +A +F +++ ++LVSWN MI G++QN P+
Sbjct: 361 KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPI 420
Query: 556 EAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSII 615
+A+ F +M S V+P + VS+++A ++LS K H +++ L + FV +++
Sbjct: 421 DALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALV 480
Query: 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF 675
DMYAKCG + +R +FD + ++ VT+WNA+I G+G HG+GK A+ELFE+M KP+
Sbjct: 481 DMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGV 540
Query: 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735
TF+ ++ AC+H+GLVE GLK F M++ ++++ ++HY +VD+LGRAG+L++A+ I++
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 736 MPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795
MP + ++ ++L +C+ + + EK A+ L EL PD +VL++NIY + W+ V
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKV 660
Query: 796 RMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYK 855
+R M +GL+K GCS +E+ +HSF G HP+ ++I +L I + GY
Sbjct: 661 GQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYV 720
Query: 856 PYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLI 915
P T VL +E + K +L HSEKLAISFGLL TT T+ V KNLR+C DCHNA K I
Sbjct: 721 PDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYI 779
Query: 916 SKVAEREIVIRDNKRFHHFRDGVCSCGD 943
S V REIV+RD +RFHHF++G CSCGD
Sbjct: 780 SLVTGREIVVRDMQRFHHFKNGACSCGD 807
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 263/656 (40%), Positives = 404/656 (61%), Gaps = 5/656 (0%)
Query: 290 VHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGD 349
+H + LGL + L+ + G ++ A+ +FD + WN II +S
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 350 VCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVA 409
+ MQ+ + P+ T ++L +CS S L + +H R GFD D V
Sbjct: 100 FQDALLMYSNMQLAR--VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 410 NAFVVAYAKCGSEISAENVFHGMD--SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSD 467
N + YAKC SA VF G+ RT+ SW A++ YAQNG+ ++AL+ F QM D
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 468 LEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSAR 527
++PD ++ S++ A T L+ L +G+ IH V++ GLE + ISL ++Y C + ++A+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 528 VLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS 587
+LFD+M+ +L+ WN MI+GY++N EAI +F M + V+P ISI S +SAC+Q+
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIG 647
+L + + Y ++ +D F++ ++IDM+AKCG +E +R VFDR D+DV W+A+I
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397
Query: 648 GHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK 707
G+G+HG +EAI L+ M G P+ TF+G+LMACNH+G+V G +F++M H +
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKIN 456
Query: 708 PKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKT 767
P+ +HYACV+D+LGRAG LD A+++I MP + +W +LL +C+ + +++GE A+
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516
Query: 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVV 827
L ++P +YV +SN+YA + WD V +R RMKE+GL K+ GCSW+E+ G + +F V
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRV 576
Query: 828 GDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGL 887
GD HP +EEI +E ++ + G+ +A LH+L +EE L HSE++AI++GL
Sbjct: 577 GDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGL 636
Query: 888 LKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
+ T + LR+ KNLR CV+CH A KLISK+ +REIV+RD RFHHF+DGVCSCGD
Sbjct: 637 ISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGD 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/835 (34%), Positives = 478/835 (57%), Gaps = 18/835 (2%)
Query: 116 DSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC 175
++ +FD R+ + +L+ GF+++ + +F+ + ++ D F V+K
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI-HRLGMEMDCSIFSSVLKVS 103
Query: 176 GGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWN 235
+ D FG +H K G + DV V +L+ Y K + ++ K+F+ M ERN+V+W
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163
Query: 236 SIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAV 295
++I G + N + E L ++M EG P+ T L V A EG G+ VH + V
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQN--EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 296 KLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG---DVCG 352
K GL + + V+N+L+++Y KCG + +A+ILFDK K+VV+WN++I ++ G + G
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 353 TFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAF 412
F M+ ++ +E + +V+ C+ EL ++LH +++GF D+ + A
Sbjct: 282 MF-----YSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336
Query: 413 VVAYAKCGSEISAENVFHGMDS-RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPD 471
+VAY+KC + + A +F + V SW A+I G+ QN +A+D F +M + P+
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396
Query: 472 LFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFD 531
F+ ++ A + E+H V++ E S G +LL Y+ K A +F
Sbjct: 397 EFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS 452
Query: 532 EMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSA-LR 590
++DK +V+W+ M+AGY+Q AI +F + G++P E + SIL+ C+ +A +
Sbjct: 453 GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG 512
Query: 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHG 650
GK+ H +A+K+ L + V+ +++ MYAK G +E + VF R ++KD+ SWN++I G+
Sbjct: 513 QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYA 572
Query: 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL 710
HG +A+++F++M K D TF+G+ AC HAGLVE G KYF M + + P
Sbjct: 573 QHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTK 632
Query: 711 EHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770
EH +C+VD+ RAG+L+ A K+I MP A + IW ++L +CR + ++G A+ ++
Sbjct: 633 EHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIA 692
Query: 771 LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDN 830
++P+ + YVL+SN+YA S W + +R+ M ER ++KE G SWIE+ +SF+ GD
Sbjct: 693 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752
Query: 831 MHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKT 890
HP ++I L ++ +GY+P T VL ++++E K +L HSE+LAI+FGL+ T
Sbjct: 753 SHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIAT 812
Query: 891 TKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHF-RDGVCSCGDI 944
K L + KNLR+C DCH KLI+K+ EREIV+RD+ RFHHF DGVCSCGD
Sbjct: 813 PKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDF 867
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 320/945 (33%), Positives = 497/945 (52%), Gaps = 88/945 (9%)
Query: 77 DIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALV 136
D+ +GK H I + F+IN LI+MYS CG +RRVFD + R+L WN+++
Sbjct: 54 DLMLGKCTHARILTFEENPERFLINN-LISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 137 SGFTKNE--LYPDVLSIFV--ELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAA 192
+ + ++ + ++ F+ +L + T ++K C V HG A
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172
Query: 193 KMGLIG-------------------------------DVFVSNALIAMYGKCAFVEEMVK 221
K+GL G DV + N ++ Y + F EE +
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 222 LFEVM------PERNLVSWNSIICGSSENGFSCESF----------DLLIKMMGCEEGFI 265
L P + + I G + +SF +++ + G E
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLH 292
Query: 266 P--------------------DVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMV 305
D T + +L ++ LG VH +A+KLGL L V
Sbjct: 293 SGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTV 352
Query: 306 NNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG----DVCGTFDLLRKMQ 361
+N+L++MY K A+ +FD + ++++SWN++I + G VC LLR
Sbjct: 353 SNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC-- 410
Query: 362 MKEEEMKPNEVTVLNVLTSCSEKSELLSL-KELHGYSLRHGFDNDELVANAFVVAYAKCG 420
+KP++ T+ +VL + S E LSL K++H ++++ +D V+ A + AY++
Sbjct: 411 ----GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466
Query: 421 SEISAENVF--HGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSL 478
AE +F H D + +WNA++ GY Q+ D K L F M D F++ ++
Sbjct: 467 CMKEAEILFERHNFD---LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATV 523
Query: 479 ILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSL 538
C L ++++GK++H + I++G + D + +L +Y+ C S+A+ FD +
Sbjct: 524 FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583
Query: 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCY 598
V+W TMI+G +N A +F +M +GV P E +I ++ A S L+AL G++ H
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 643
Query: 599 ALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEA 658
ALK TND FV S++DMYAKCG ++ + +F R++ ++T+WNA++ G HG GKE
Sbjct: 644 ALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKET 703
Query: 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718
++LF++M +LG KPD TF+G+L AC+H+GLV K+ M + +KP++EHY+C+ D
Sbjct: 704 LQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLAD 763
Query: 719 MLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778
LGRAG + A LI M EA A ++ +LL +CR G + G++VA LLELEP +
Sbjct: 764 ALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA 823
Query: 779 YVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEI 838
YVL+SN+YA + KWD++++ R MK ++K+ G SWIE+ IH FVV D + + E I
Sbjct: 824 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELI 883
Query: 839 RGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRV 898
+ I + GY P T+ L ++EEEEK L HSEKLA++FGLL T +RV
Sbjct: 884 YRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRV 943
Query: 899 CKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
KNLR+C DCHNA K I+KV REIV+RD RFH F+DG+CSCGD
Sbjct: 944 IKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 282/780 (36%), Positives = 441/780 (56%), Gaps = 7/780 (0%)
Query: 164 DNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLF 223
D T V++ C + G V G + D + + L MY C ++E ++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 224 EVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGN 283
+ + + WN ++ +++G S L KMM G D T V + +
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS--SGVEMDSYTFSCVSKSFSSLRS 210
Query: 284 VDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGA 343
V G +HG +K G V N+LV Y K + A+ +FD+ ++V+SWN+II
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270
Query: 344 FSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSL-KELHGYSLRHGF 402
+ G + +QM ++ + T+++V C++ S L+SL + +H ++ F
Sbjct: 271 YVSNGLAEKGLSVF--VQMLVSGIEIDLATIVSVFAGCAD-SRLISLGRAVHSIGVKACF 327
Query: 403 DNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQ 462
++ N + Y+KCG SA+ VF M R+V S+ ++I GYA+ G +A+ F +
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387
Query: 463 MTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522
M + PD++++ +++ C + L GK +H ++ N L D F +L+ +Y C
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447
Query: 523 SSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFS-IGVQPCEISIVSILS 581
A ++F EM K ++SWNT+I GYS+N EA+ LF + P E ++ +L
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507
Query: 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTS 641
AC+ LSA G+E H Y ++ +D VA S++DMYAKCG L + +FD + KD+ S
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567
Query: 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQ 701
W +I G+G+HG+GKEAI LF +M G + D +FV +L AC+H+GLV+ G ++F+ M+
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627
Query: 702 KLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMG 761
++P +EHYAC+VDML R G L A++ I MP DA IW +LL CR + +K+
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687
Query: 762 EKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGN 821
EKVA+ + ELEP+ YVL++NIYA +EKW+ V+ +R+R+ +RGL+K GCSWIE+ G
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747
Query: 822 IHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKL 881
++ FV GD+ +PE E I ++ ++ + GY P T+ L + EE EK L GHSEKL
Sbjct: 748 VNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKL 807
Query: 882 AISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSC 941
A++ G++ + +RV KNLR+C DCH AK +SK+ REIV+RD+ RFH F+DG CSC
Sbjct: 808 AMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC 867
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| 224135349 | 924 | predicted protein [Populus trichocarpa] | 0.954 | 0.984 | 0.677 | 0.0 | |
| 225455746 | 881 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.996 | 0.686 | 0.0 | |
| 356519174 | 975 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.948 | 0.606 | 0.0 | |
| 449477503 | 990 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.950 | 0.6 | 0.0 | |
| 449441113 | 990 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.950 | 0.6 | 0.0 | |
| 255541924 | 810 | pentatricopeptide repeat-containing prot | 0.841 | 0.990 | 0.653 | 0.0 | |
| 357450795 | 975 | Pentatricopeptide repeat protein [Medica | 0.979 | 0.956 | 0.581 | 0.0 | |
| 18394615 | 970 | pentatricopeptide repeat-containing prot | 0.958 | 0.941 | 0.577 | 0.0 | |
| 6714305 | 1702 | F15H18.4 [Arabidopsis thaliana] | 0.951 | 0.532 | 0.574 | 0.0 | |
| 297844796 | 953 | pentatricopeptide repeat-containing prot | 0.964 | 0.964 | 0.560 | 0.0 |
| >gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa] gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/918 (67%), Positives = 756/918 (82%), Gaps = 8/918 (0%)
Query: 31 FLQEITTLCEESKSLNKALSLLQENLHNADL-----KEATGVLLQACGHEKDIEIGKRVH 85
FLQEI LCE + +L AL L+Q + NA KEA G+LLQACG++KDIE G+R+H
Sbjct: 8 FLQEIAALCE-TDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLH 66
Query: 86 ELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELY 145
+ +S ST + ND+++NTRLI MY++CG PLDSR VFD+++T+NL QWNALVSG+T+N LY
Sbjct: 67 KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLY 126
Query: 146 PDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNA 205
DV+ +F++L+SDT+ +PDNFTFP VIKACGGI DV G +HGM KMGL+ DVFV NA
Sbjct: 127 GDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNA 186
Query: 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFI 265
L+ MYGKC V+E +K+F+ MPE NLVSWNS+IC SENGFS +SFDLL++M+G EEG +
Sbjct: 187 LVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLG-EEGLL 245
Query: 266 PDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQIL 325
PDV TVVT+LPVCAGEG VD+G+ +HGLAVKLGL+ E+MVNNA+V MY+KCG+L+EAQ+
Sbjct: 246 PDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMS 305
Query: 326 FDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKS 385
F KNNNKNVVSWNT+I AFS+ GDV F+LL++MQ++ EEMK NEVT+LNVL +C +K
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365
Query: 386 ELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALIC 445
+L SLKELHGYS RH F + EL +NAF++AYAKCG+ SAE VFHG+ +TVSSWNALI
Sbjct: 366 QLRSLKELHGYSFRHCFQHVEL-SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIG 424
Query: 446 GYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEG 505
G+AQNGD KAL QMT+S +PD F+I SL+LAC HLKSL GKEIHG+V+RNGLE
Sbjct: 425 GHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLET 484
Query: 506 DSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMF 565
D F G SLLS Y+HC K+SSARVLFD M+DK+LVSWN MI+GYSQN LP E++ LFR+
Sbjct: 485 DFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSL 544
Query: 566 SIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE 625
S G+Q EI+IVS+ ACSQLSALRLGKE H Y LKA+ T DAFV CSIIDMYAK GC++
Sbjct: 545 SEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIK 604
Query: 626 QSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685
+SR+VFD LKDK+V SWNAII HGIHG+GKEAIEL+E+M +G PD FT++GILMAC
Sbjct: 605 ESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACG 664
Query: 686 HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIW 745
HAGLVE GLKYF +MQ + ++PKLEHYAC++DML RAG+LDDA +L+ EMPEEAD IW
Sbjct: 665 HAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIW 724
Query: 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805
SSLLRSCRT+GAL++GEKVAK LLELEPDKAENYVL+SN+YAG KWD VR +RQ MKE
Sbjct: 725 SSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEI 784
Query: 806 GLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHEL 865
GLQK+AGCSWIE+GG ++SFVVGD++ P+ EIR +W RLEE+IS+IGYKP T +VLHE+
Sbjct: 785 GLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEV 844
Query: 866 EEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVI 925
EEEK++ILRGHSEKLAISFGLLKTTK TLR+ KNLRIC DCHNAAKLISK EREIV+
Sbjct: 845 GEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVV 904
Query: 926 RDNKRFHHFRDGVCSCGD 943
RDNKRFHHFRDG+CSC D
Sbjct: 905 RDNKRFHHFRDGLCSCCD 922
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/878 (68%), Positives = 721/878 (82%)
Query: 66 GVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 125
GVLLQACG KDIE+G+R+HE++SASTQF NDF++NTR+ITMYS+CG P DSR VFD L+
Sbjct: 2 GVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61
Query: 126 TRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGS 185
+NLFQWNA+VS +T+NEL+ D +SIF EL+S TE KPDNFT PCVIKAC G+ D+ G
Sbjct: 62 RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 121
Query: 186 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENG 245
+HGMA KM L+ DVFV NALIAMYGKC VEE VK+FE MPERNLVSWNSIICG SENG
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181
Query: 246 FSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMV 305
F ESF+ +M+ EE F+PDVAT+VTVLPVCAGE +++ G+ VHGLAVKLGL ELMV
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMV 241
Query: 306 NNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEE 365
NN+L+DMY+KC FLSEAQ+LFDKN+ KN+VSWN++IG ++ DVC TF LL+KMQ ++
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301
Query: 366 EMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISA 425
+MK +E T+LNVL C E+SEL SLKELHGYS RHG ++ELVANAF+ AY +CG+ S+
Sbjct: 302 KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS 361
Query: 426 ENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHL 485
E VF MD++TVSSWNAL+CGYAQN D KALD +LQMT S L+PD F+IGSL+LAC+ +
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421
Query: 486 KSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMI 545
KSLH G+EIHGF +RNGL D F GISLLSLY+ C K +A+VLFD ME +SLVSWN MI
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 481
Query: 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILT 605
AGYSQN LP EAI LFR+M S G+QP EI+I+ + ACSQLSALRLGKE HC+ALKA LT
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 541
Query: 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKM 665
D FV+ SIIDMYAK GC+ S+R+FDRL++KDV SWN II G+GIHG GKEA+ELFEKM
Sbjct: 542 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 601
Query: 666 LALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725
L LG KPD FTF GILMAC+HAGLVE+GL+YF+QM LH ++PKLEHY CVVDMLGRAG+
Sbjct: 602 LRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGR 661
Query: 726 LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785
+DDA +LI EMP + D+ IWSSLL SCR +G L +GEKVA LLELEP+K ENYVL+SN+
Sbjct: 662 IDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 721
Query: 786 YAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRL 845
+AGS KWDDVR +R RMK+ GLQK+AGCSWIE+GG +H+F++GD M PE EE+R W RL
Sbjct: 722 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRL 781
Query: 846 EEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRIC 905
E +IS IGY P T +VLH+LEEE+K+ ILRGHSEKLAISFGLL T K L +RV KNLRIC
Sbjct: 782 EVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRIC 841
Query: 906 VDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
DCHNAAK ISKV R+IV+RDNKRFHHFRDG+CSCGD
Sbjct: 842 GDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGD 879
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/940 (60%), Positives = 719/940 (76%), Gaps = 15/940 (1%)
Query: 12 KSSLSLSAKTNNASTEGLHFLQEITTLCEESKSLNKALSLLQENLHNADL------KEAT 65
KSSL+ KT++ LQ + LC+ S +LN AL+LL + N + KEA
Sbjct: 43 KSSLTSHTKTHSP------ILQRLHNLCD-SGNLNDALNLLHSHAQNGTVSSSDISKEAI 95
Query: 66 GVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK 125
G+LL+ACGH K+I +G++VH L+SAS + ND +++TR+I MYS CG P DSR VFD+ K
Sbjct: 96 GILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAK 155
Query: 126 TRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGS 185
++LF +NAL+SG+++N L+ D +S+F+ELLS T+L PDNFT PCV KAC G+ADV G
Sbjct: 156 EKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGE 215
Query: 186 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENG 245
VH +A K G D FV NALIAMYGKC FVE VK+FE M RNLVSWNS++ SENG
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENG 275
Query: 246 FSCESFDLLIKMM-GCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELM 304
E + +++ EEG +PDVAT+VTV+P CA G V +G++VHGLA KLG+T E+
Sbjct: 276 GFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVT 335
Query: 305 VNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKE 364
VNN+LVDMY+KCG+L EA+ LFD N KNVVSWNTII +S GD G F+LL++MQ +E
Sbjct: 336 VNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQ-RE 394
Query: 365 EEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEIS 424
E+++ NEVTVLNVL +CS + +LLSLKE+HGY+ RHGF DELVANAFV AYAKC S
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454
Query: 425 AENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484
AE VF GM+ +TVSSWNALI +AQNG K+LD FL M S ++PD F+IGSL+LAC
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514
Query: 485 LKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTM 544
LK L GKEIHGF++RNGLE D F GISL+SLY+ C +++FD+ME+KSLV WN M
Sbjct: 515 LKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVM 574
Query: 545 IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAIL 604
I G+SQN+LP EA+ FR+M S G++P EI++ +L ACSQ+SALRLGKE H +ALKA L
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634
Query: 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEK 664
+ DAFV C++IDMYAKCGC+EQS+ +FDR+ +KD WN II G+GIHG+G +AIELFE
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFEL 694
Query: 665 MLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724
M G +PD+FTF+G+L+ACNHAGLV GLKY QMQ L+ VKPKLEHYACVVDMLGRAG
Sbjct: 695 MQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAG 754
Query: 725 KLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784
+L +A KL+ EMP+E D+GIWSSLL SCR YG L++GE+V+K LLELEP+KAENYVL+SN
Sbjct: 755 QLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSN 814
Query: 785 IYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGR 844
+YAG KWD+VR +RQRMKE GL K+AGCSWIE+GG ++ F+V D E ++I+ W +
Sbjct: 815 LYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIK 874
Query: 845 LEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRI 904
LE++ISKIGYKP T VLHELEEE K+ IL+ HSEKLAISFGLL T K TLRVCKNLRI
Sbjct: 875 LEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRI 934
Query: 905 CVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGDI 944
CVDCHNA KL+SKV +R+I++RDNKRFHHF++G+C+CGD
Sbjct: 935 CVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDF 974
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/955 (60%), Positives = 721/955 (75%), Gaps = 14/955 (1%)
Query: 2 KHSLRSIFKAKSS-LSLSAKTNNASTEG------LHFLQEITTLCEESKSLNKALSLLQE 54
K+SL S KSS +SA+T + + L L+EI+ LCE + LN AL LQ
Sbjct: 35 KNSLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCE-AGDLNGALDFLQR 93
Query: 55 NLHN------ADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMY 108
N A KEA G+LLQ CG K++EIG+++ E++ S+QFS DF++NTRLITMY
Sbjct: 94 AWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMY 153
Query: 109 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTF 168
S+CG+PL+SR VFD L +NLFQWNALVSG+ +NELY + + F+EL+S TE +PDNFTF
Sbjct: 154 SICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTF 213
Query: 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 228
PC+IKAC G D+ G VHGMA KMGLI D+FV NA+IA+YGKC F++E V+LF+ MPE
Sbjct: 214 PCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPE 273
Query: 229 RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288
+NL+SWNS+I G SENGF E++ ++ +G IPDVAT+VT+LPVC+GEGNVD+G+
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333
Query: 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG 348
++HG+AVKLGL ELMV NAL+DMY+KCG LSEA ILF K NK+VVSWN++IGA+S G
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393
Query: 349 DVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELV 408
V TFDLLRKM M+EE M+ NEVT+LN+L +C E+SELLSL+ LHGYSLRH F EL+
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELI 453
Query: 409 ANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDL 468
NAF+ AYAKCGS + AE+VF GM++++VSSWNA+I G+AQNGD +KALD++ +MT +
Sbjct: 454 NNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGI 513
Query: 469 EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARV 528
PD FSI SL+LAC L L GKEIHGFV+RNGLE +SF +SLLSLY HC K R
Sbjct: 514 LPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRT 573
Query: 529 LFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSA 588
F+ M DK+ V WN M++GYSQN+LP EA+ LFR+M S G++P EI+I SIL ACSQLSA
Sbjct: 574 YFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSA 633
Query: 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGG 648
L LGKE HC+ALK L D FVACS++DMYAK G L S+R+F+RL K+V SWN +I G
Sbjct: 634 LGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITG 693
Query: 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP 708
G+HG G +A+ELFE M +PD FTF+G+L AC HAGLV GL Y +QMQ L+ ++P
Sbjct: 694 FGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEP 753
Query: 709 KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTL 768
+LEHYACV+DMLGRAG+L++A I EMPEE DA IWSSLL S TY L+MGEK A+ L
Sbjct: 754 ELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKL 813
Query: 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVG 828
L LE +KA++Y+L+SN+YA + KWD VRM+RQ+MK+ LQK+ GCSWIEL G ++SF+ G
Sbjct: 814 LALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAG 873
Query: 829 DNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLL 888
+N +P +EIR MW RLE+QI +IGY P VLHELEE EK IL+GHSEK+AI FG L
Sbjct: 874 ENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFL 933
Query: 889 KTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
T + TLR+ KNLRIC DCHNAAK ISK A+REIVIRDNKRFHHF+ G+CSCGD
Sbjct: 934 NTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGD 988
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/955 (60%), Positives = 721/955 (75%), Gaps = 14/955 (1%)
Query: 2 KHSLRSIFKAKSS-LSLSAKTNNASTEG------LHFLQEITTLCEESKSLNKALSLLQE 54
K+SL S KSS +SA+T + + L L+EI+ LCE + LN AL LQ
Sbjct: 35 KNSLLSTSTPKSSYFFVSARTQSHQSRSVNPVSQLSLLEEISKLCE-AGDLNGALDFLQR 93
Query: 55 NLHN------ADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMY 108
N A KEA G+LLQ CG K++EIG+++ E++ S+QFS DF++NTRLITMY
Sbjct: 94 AWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMY 153
Query: 109 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTF 168
S+CG+PL+SR VFD L +NLFQWNALVSG+ +NELY + + F+EL+S TE +PDNFTF
Sbjct: 154 SICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTF 213
Query: 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 228
PC+IKAC G D+ G VHGMA KMGLI D+FV NA+IA+YGKC F++E V+LF+ MPE
Sbjct: 214 PCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPE 273
Query: 229 RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288
+NL+SWNS+I G SENGF E++ ++ +G IPDVAT+VT+LPVC+GEGNVD+G+
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333
Query: 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG 348
++HG+AVKLGL ELMV NAL+DMY+KCG LSEA ILF K NK+VVSWN++IGA+S G
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393
Query: 349 DVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELV 408
V TFDLLRKM M+EE M+ NEVT+LN+L +C E+SELLSL+ LHGYSLRH F EL+
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELI 453
Query: 409 ANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDL 468
NAF+ AYAKCGS + AE+VF GM++++VSSWNA+I G+AQNGD +KALD++ +MT +
Sbjct: 454 NNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGI 513
Query: 469 EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARV 528
PD FSI SL+LAC L L GKEIHGFV+RNGLE +SF +SLLSLY HC K R
Sbjct: 514 LPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRT 573
Query: 529 LFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSA 588
F+ M DK+ V WN M++GYSQN+LP EA+ LFR+M S G++P EI+I SIL ACSQLSA
Sbjct: 574 YFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSA 633
Query: 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGG 648
L LGKE HC+ALK L D FVACS++DMYAK G L S+R+F+RL K+V SWN +I G
Sbjct: 634 LGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITG 693
Query: 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP 708
G+HG G +A+ELFE M +PD FTF+G+L AC HAGLV GL Y +QMQ L+ ++P
Sbjct: 694 FGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEP 753
Query: 709 KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTL 768
+LEHYACV+DMLGRAG+L++A I EMPEE DA IWSSLL S TY L+MGEK A+ L
Sbjct: 754 ELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKL 813
Query: 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVG 828
L LE +KA++Y+L+SN+YA + KWD VRM+RQ+MK+ LQK+ GCSWIEL G ++SF+ G
Sbjct: 814 LALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAG 873
Query: 829 DNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLL 888
+N +P +EIR MW RLE+QI +IGY P VLHELEE EK IL+GHSEK+AI FG L
Sbjct: 874 ENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFL 933
Query: 889 KTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
T + TLR+ KNLRIC DCHNAAK ISK A+REIVIRDNKRFHHF+ G+CSCGD
Sbjct: 934 NTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGD 988
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/803 (65%), Positives = 651/803 (81%), Gaps = 1/803 (0%)
Query: 141 KNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDV 200
+NELY D + +FV+L++DTE DNFTFPCVIKAC G D G +HGM KMGL+ DV
Sbjct: 7 RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66
Query: 201 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260
FV NALIAMYGK FV+ VK+F MP RNLVSWNSII G SENGFS + FD+L++MM
Sbjct: 67 FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126
Query: 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLS 320
EEG +PD+AT+VTVLPVCA E +V +GI +HGLAVKLGL+ ++ VNN+LVDMY+KCG+L+
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186
Query: 321 EAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTS 380
EAQ+LFDKNN KN VSWNT+IG G + F+L R+MQM +E+++ NEVTVLN+L +
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQM-QEDIEVNEVTVLNILPA 245
Query: 381 CSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSW 440
C E S+L SLKELHGYS+RHGF DELVAN FV AYAKCG I AE VF+ M+++TV+SW
Sbjct: 246 CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSW 305
Query: 441 NALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500
NALI G AQNGD KAL+ ++QMT+S L PD F+IGSL+LA HLKSL GKE+HGFV+R
Sbjct: 306 NALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLR 365
Query: 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVL 560
+GLE DSF GISLLSLY+HC +SSSAR+LFD ME+KS VSWN MI+GYSQN LP +A++L
Sbjct: 366 HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALIL 425
Query: 561 FRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK 620
FR++ S G QP +I++VS+L ACSQ SALRLGKETHCYALKA+L D FVACS IDMYAK
Sbjct: 426 FRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAK 485
Query: 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGI 680
GC+++SR VFD LK+KD+ SWNAII +G+HG G+E+IELFE+M +G PD FTF+GI
Sbjct: 486 SGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGI 545
Query: 681 LMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA 740
L C+HAGLVE GLKYF++MQ H ++PKLEHYACV+DMLGRAG+LDDA +L+ EMPE+
Sbjct: 546 LTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQP 605
Query: 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800
D+ +WSSLL CR +G L++G+ VA+ LLELEP ENYV +SN+YAGS +WDDVR +RQ
Sbjct: 606 DSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQ 665
Query: 801 RMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEA 860
+K+ GLQK+AGCSWIELGG +HSFV GDN+ P+ +E+ W +LE+++ KIGYKP T A
Sbjct: 666 MIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSA 725
Query: 861 VLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAE 920
VLH+++EE+K+ LRGHSEKLAI FGLL TTK TLR+ KNLRICVDCHNA+K +S+V
Sbjct: 726 VLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTG 785
Query: 921 REIVIRDNKRFHHFRDGVCSCGD 943
REI+IRDNKRFHHF+DG+CSCGD
Sbjct: 786 REIIIRDNKRFHHFKDGLCSCGD 808
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/956 (58%), Positives = 702/956 (73%), Gaps = 23/956 (2%)
Query: 1 NKHSLRSIFKAKSS------LSLSAKTNNASTEGLHFLQEITTLCEESKSLNKALSLLQE 54
NK S KSS +S K NAS HF LC + +LN+A + LQ
Sbjct: 28 NKIPFHSFTPPKSSHLFSPIISSHKKQQNASK---HF----HNLCN-TGNLNQAFNFLQS 79
Query: 55 NLH------NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMY 108
NL+ N+ K+ G+LLQ CG K+IEIG+++H IS S F ND ++ TRL+TMY
Sbjct: 80 NLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMY 139
Query: 109 SLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTF 168
S+C P DS VF++ + +NLF WNAL+SG+ +N L+ D + +FVE++S TE PDNFT
Sbjct: 140 SICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTL 199
Query: 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 228
PCVIKAC G+ DV G VHG A K ++ DVFV NALIAMYGK FVE VK+F+ MP+
Sbjct: 200 PCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQ 259
Query: 229 RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288
RNLVSWNS++ ENG ES+ L ++ +EG +PDVAT+VTV+P+CA +G V LG+
Sbjct: 260 RNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM 319
Query: 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG 348
+ HGLA+KLGL EL VN++L+DMY+KCG+L EA++LFD N KNV+SWN++IG +S
Sbjct: 320 VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDR 378
Query: 349 DVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGF-DNDEL 407
D G F+LLRKMQM E+++K NEVT+LNVL C E+ + L LKE+HGY+LRHGF +DEL
Sbjct: 379 DFRGAFELLRKMQM-EDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDEL 437
Query: 408 VANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSD 467
VANAFV YAKCGS AE VF GM+S+ VSSWNALI G+ QNG KALD +L M S
Sbjct: 438 VANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSG 497
Query: 468 LEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSAR 527
LEPDLF+I SL+ AC LKSL GKEIHG ++RNG E D F ISL+SLY+ C K A+
Sbjct: 498 LEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAK 557
Query: 528 VLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS 587
+ FD ME+K+LV WNTMI G+SQN+ P +A+ +F +M S + P EISI+ L ACSQ+S
Sbjct: 558 LFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVS 617
Query: 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIG 647
ALRLGKE HC+A+K+ LT +FV CS+IDMYAKCGC+EQS+ +FDR+ K +WN +I
Sbjct: 618 ALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLIT 677
Query: 648 GHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK 707
G+GIHG+G++AIELF+ M G +PD+ TF+ +L ACNHAGLV GL+Y QMQ L +K
Sbjct: 678 GYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIK 737
Query: 708 PKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKT 767
PKLEHYACVVDMLGRAG+L++A +L+ E+P++ D+ IWSSLL SCR Y L +GEKVA
Sbjct: 738 PKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANK 797
Query: 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVV 827
LLEL PDKAENYVL+SN YA KWD+VR MRQRMKE GLQK+AGCSWIE+GG + F+V
Sbjct: 798 LLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLV 857
Query: 828 GDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGL 887
GD + +I+ W LE++I+KIGYKP T VLHELEE+EK+ ILR HSEKLAISFGL
Sbjct: 858 GDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGL 917
Query: 888 LKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
L T K TLRVCKNLRICVDCHNA KL+SK+ +REI++RDNKRFHHF++G CSCGD
Sbjct: 918 LNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGD 973
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/925 (57%), Positives = 698/925 (75%), Gaps = 12/925 (1%)
Query: 30 HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 81
HFL+ I+ CE + L+K+ +QE + + + ++EA G+LLQA G KDIE+G
Sbjct: 45 HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 103
Query: 82 KRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 141
+++H+L+S ST+ ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 104 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 163
Query: 142 NELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVF 201
NELY +VL F+E++S T+L PD+FT+PCVIKAC G++DV G VHG+ K GL+ DVF
Sbjct: 164 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 223
Query: 202 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMM--G 259
V NAL++ YG FV + ++LF++MPERNLVSWNS+I S+NGFS ESF LL +MM
Sbjct: 224 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283
Query: 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFL 319
+ F+PDVAT+VTVLPVCA E + LG VHG AVKL L +EL++NNAL+DMY+KCG +
Sbjct: 284 GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCI 343
Query: 320 SEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLT 379
+ AQ++F NNNKNVVSWNT++G FS GD GTFD+LR+M E++K +EVT+LN +
Sbjct: 344 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 403
Query: 380 SCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSS 439
C +S L SLKELH YSL+ F +ELVANAFV +YAKCGS A+ VFHG+ S+TV+S
Sbjct: 404 VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS 463
Query: 440 WNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVI 499
WNALI G+AQ+ D +LD LQM S L PD F++ SL+ AC+ LKSL GKE+HGF+I
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 500 RNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIV 559
RN LE D F +S+LSLY+HC + + + LFD MEDKSLVSWNT+I GY QN P A+
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619
+FR+M G+Q C IS++ + ACS L +LRLG+E H YALK +L +DAF+ACS+IDMYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643
Query: 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679
K G + QS +VF+ LK+K SWNA+I G+GIHG KEAI+LFE+M GH PD TF+G
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII-EMPE 738
+L ACNH+GL+ GL+Y QM+ +KP L+HYACV+DMLGRAG+LD A +++ EM E
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798
EAD GIW SLL SCR + L+MGEKVA L ELEP+K ENYVL+SN+YAG KW+DVR +
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 799 RQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYT 858
RQRM E L+K+AGCSWIEL + SFVVG+ +EEI+ +W LE +ISK+GY+P T
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 883
Query: 859 EAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKV 918
+V H+L EEEK+ LRGHSEKLA+++GL+KT++ T+RV KNLRICVDCHNAAKLISKV
Sbjct: 884 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 943
Query: 919 AEREIVIRDNKRFHHFRDGVCSCGD 943
EREIV+RDNKRFHHF++GVCSCGD
Sbjct: 944 MEREIVVRDNKRFHHFKNGVCSCGD 968
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/919 (57%), Positives = 692/919 (75%), Gaps = 12/919 (1%)
Query: 30 HFLQEITTLCEESKSLNKALSLLQENLHNAD--------LKEATGVLLQACGHEKDIEIG 81
HFL+ I+ CE + L+K+ +QE + + + ++EA G+LLQA G KDIE+G
Sbjct: 400 HFLRRISNFCE-TGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMG 458
Query: 82 KRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 141
+++H+L+S ST+ ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S +++
Sbjct: 459 RKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSR 518
Query: 142 NELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVF 201
NELY +VL F+E++S T+L PD+FT+PCVIKAC G++DV G VHG+ K GL+ DVF
Sbjct: 519 NELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVF 578
Query: 202 VSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMM--G 259
V NAL++ YG FV + ++LF++MPERNLVSWNS+I S+NGFS ESF LL +MM
Sbjct: 579 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 638
Query: 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFL 319
+ F+PDVAT+VTVLPVCA E + LG VHG AVKL L +EL++NNAL+DMY+KCG +
Sbjct: 639 GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCI 698
Query: 320 SEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLT 379
+ AQ++F NNNKNVVSWNT++G FS GD GTFD+LR+M E++K +EVT+LN +
Sbjct: 699 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 758
Query: 380 SCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSS 439
C +S L SLKELH YSL+ F +ELVANAFV +YAKCGS A+ VFHG+ S+TV+S
Sbjct: 759 VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS 818
Query: 440 WNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVI 499
WNALI G+AQ+ D +LD LQM S L PD F++ SL+ AC+ LKSL GKE+HGF+I
Sbjct: 819 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 878
Query: 500 RNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIV 559
RN LE D F +S+LSLY+HC + + + LFD MEDKSLVSWNT+I GY QN P A+
Sbjct: 879 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 938
Query: 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619
+FR+M G+Q C IS++ + ACS L +LRLG+E H YALK +L +DAF+ACS+IDMYA
Sbjct: 939 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 998
Query: 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679
K G + QS +VF+ LK+K SWNA+I G+GIHG KEAI+LFE+M GH PD TF+G
Sbjct: 999 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 1058
Query: 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII-EMPE 738
+L ACNH+GL+ GL+Y QM+ +KP L+HYACV+DMLGRAG+LD A +++ EM E
Sbjct: 1059 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 1118
Query: 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798
EAD GIW SLL SCR + L+MGEKVA L ELEP+K ENYVL+SN+YAG KW+DVR +
Sbjct: 1119 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 1178
Query: 799 RQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYT 858
RQRM E L+K+AGCSWIEL + SFVVG+ +EEI+ +W LE +ISK+GY+P T
Sbjct: 1179 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 1238
Query: 859 EAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKV 918
+V H+L EEEK+ LRGHSEKLA+++GL+KT++ T+RV KNLRICVDCHNAAKLISKV
Sbjct: 1239 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 1298
Query: 919 AEREIVIRDNKRFHHFRDG 937
EREIV+RDNKRFHHF++G
Sbjct: 1299 MEREIVVRDNKRFHHFKNG 1317
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/946 (56%), Positives = 695/946 (73%), Gaps = 27/946 (2%)
Query: 10 KAKSSLSLSAKTNNA----STEGLHFLQEITTLCEESKSLNKALSLLQENLHNAD----- 60
+ +SS + +NA ST HFL+ I+ CE + L+K+ ++QE + +
Sbjct: 21 RKESSFPRADYNSNAISSNSTNANHFLRRISNFCE-TGDLDKSFRVVQEFAGDDESSSDV 79
Query: 61 ---LKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDS 117
++EA G+LLQA G KDIE+G+++H L+S ST+ +D ++ TR+ITMY++CG P DS
Sbjct: 80 FLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDS 139
Query: 118 RRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGG 177
R FD+L+++NLFQWNA++S +++NELY +VL +F++++S T L PDNFTFPCVIKAC G
Sbjct: 140 RSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAG 199
Query: 178 IADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSI 237
I+DV G VHG+ K GL+ D+FV NAL++ YG FV + +KLF++MPERNLVSWNS+
Sbjct: 200 ISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSM 259
Query: 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKL 297
I S+NG + F+PDVATVVTVLPVCA E + +G VHG AVKL
Sbjct: 260 IRVFSDNG--------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKL 305
Query: 298 GLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLL 357
L +EL+VNNAL+DMY+K G + ++Q++F NNNKNVVSWNT++G FS GD+ GTFDLL
Sbjct: 306 SLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLL 365
Query: 358 RKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYA 417
R+M E++K +EVT+LN + C ++S L SLKELH YSL+ F DEL+ANAFV +YA
Sbjct: 366 RQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYA 425
Query: 418 KCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGS 477
KCGS A+ VFHG+ S+T++SWNALI GYAQ+ D +LD LQM +S L PD F++ S
Sbjct: 426 KCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCS 485
Query: 478 LILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKS 537
L+ AC+ LKSL GKE+HGF+IRN LE D F +S+LSLY+HC + + +VLFD MED S
Sbjct: 486 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNS 545
Query: 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHC 597
LVSWNT+I G+ QN P A+ LFR+M G+QPC IS++++ ACS L +LRLG+E H
Sbjct: 546 LVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHA 605
Query: 598 YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKE 657
YALK +L ++AF+ACSIIDMYAK G + QS +VF+ LK+K SWNA+I G+G+HG KE
Sbjct: 606 YALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKE 665
Query: 658 AIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717
AI+LFE+M G PD TF+G+L ACNH+GL+ GL+Y QM+ +KP L+HYACV+
Sbjct: 666 AIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVI 725
Query: 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777
DMLGRAG+LD+A ++ EM EE D GIW+SLL CR + L+MGEKVA L LEP+K E
Sbjct: 726 DMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPE 785
Query: 778 NYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEE 837
NYVL+SN+YAG KWDDVR +RQRMKE L+K+AGCSWIEL G + SFVVG+ +EE
Sbjct: 786 NYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEE 845
Query: 838 IRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLR 897
I+ +W LE +I K+GY+P T +V H+L EEEK+ LRGHSEKLAI++GL+KT++ TLR
Sbjct: 846 IKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLR 905
Query: 898 VCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
V KNLRICVDCHNAAKLISKV EREIV+RDNKRFHHF G CSCGD
Sbjct: 906 VYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGD 951
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.961 | 0.944 | 0.560 | 1.2e-280 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.854 | 0.914 | 0.373 | 8.9e-157 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.897 | 0.969 | 0.359 | 1.2e-147 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.705 | 0.678 | 0.370 | 1.8e-144 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.557 | 0.624 | 0.373 | 2.6e-143 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.915 | 0.819 | 0.340 | 4.8e-142 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.818 | 0.964 | 0.350 | 8.5e-136 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.859 | 0.943 | 0.342 | 8.8e-134 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.912 | 0.928 | 0.328 | 2.1e-132 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.812 | 0.888 | 0.346 | 3.2e-129 |
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2697 (954.5 bits), Expect = 1.2e-280, P = 1.2e-280
Identities = 521/930 (56%), Positives = 679/930 (73%)
Query: 26 TEGLHFLQEITTLCEESKSLNKALSLLQENL----HNAD----LKEATGVLLQACGHEKD 77
T HFL+ I+ CE L+K+ +QE + ++D ++EA G+LLQA G KD
Sbjct: 41 TNANHFLRRISNFCETG-DLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKD 99
Query: 78 IEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS 137
IE+G+++H+L+S ST+ ND ++ TR+ITMY++CG P DSR VFD+L+++NLFQWNA++S
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVIS 159
Query: 138 GFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLI 197
+++NELY +VL F+E++S T+L PD+FT+PCVIKAC G++DV G VHG+ K GL+
Sbjct: 160 SYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLV 219
Query: 198 GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257
DVFV NAL++ YG FV + ++LF++MPERNLVSWNS+I S+NGFS ESF LL +M
Sbjct: 220 EDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEM 279
Query: 258 MGCEEG---FIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYA 314
M E G F+PDVAT+VTVLPVCA E + LG VHG AVKL L +EL++NNAL+DMY+
Sbjct: 280 ME-ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYS 338
Query: 315 KCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTV 374
KCG ++ AQ++F NNNKNVVSWNT++G FS GD GTFD+LR+M E++K +EVT+
Sbjct: 339 KCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI 398
Query: 375 LNVLTSCXXXXXXXXXXXXHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS 434
LN + C H YSL+ F +ELVANAFV +YAKCGS A+ VFHG+ S
Sbjct: 399 LNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRS 458
Query: 435 RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEI 494
+TV+SWNALI G+AQ+ D +LD LQM S L PD F++ SL+ AC+ LKSL GKE+
Sbjct: 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 518
Query: 495 HGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLP 554
HGF+IRN LE D F +S+LSLY+HC + + + LFD MEDKSLVSWNT+I GY QN P
Sbjct: 519 HGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 578
Query: 555 VEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSI 614
A+ +FR+M G+Q C IS++ + ACS L +LRLG+E H YALK +L +DAF+ACS+
Sbjct: 579 DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL 638
Query: 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDT 674
IDMYAK G + QS +VF+ LK+K SWNA KEAI+LFE+M GH PD
Sbjct: 639 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Query: 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734
TF+G+L ACNH+GL+ GL+Y QM+ +KP L+HYACV+DMLGRAG+LD A +++
Sbjct: 699 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVA 758
Query: 735 E-MPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793
E M EEAD GIW SLL SCR + L+MGEKVA L ELEP+K ENYVL+SN+YAG KW+
Sbjct: 759 EEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWE 818
Query: 794 DVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIG 853
DVR +RQRM E L+K+AGCSWIEL + SFVVG+ +EEI+ +W LE +ISK+G
Sbjct: 819 DVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMG 878
Query: 854 YKPYTEAVLHXXXXXXKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAK 913
Y+P T +V H K+ LRGHSEKLA+++GL+KT++ T+RV KNLRICVDCHNAAK
Sbjct: 879 YRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAK 938
Query: 914 LISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
LISKV EREIV+RDNKRFHHF++GVCSCGD
Sbjct: 939 LISKVMEREIVVRDNKRFHHFKNGVCSCGD 968
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 316/845 (37%), Positives = 498/845 (58%)
Query: 120 VFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIA 179
+F S ++R+ W L+ ++ L + + +V+++ +KPDN+ FP ++KA +
Sbjct: 54 IFIS-QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIV-LGIKPDNYAFPALLKAVADLQ 111
Query: 180 DVSFGSGVHGMAAKMGL-IGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSII 238
D+ G +H K G + V V+N L+ +Y KC + K+F+ + ERN VSWNS+I
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171
Query: 239 CGSSENGFSCESFDLLIKMMGC--EEGFIPDVATVVTVLPVCAG----EGNVDLGILVHG 292
SS F E +++ ++ C +E P T+V+V+ C+ EG + +G VH
Sbjct: 172 --SSLCSF--EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLM-MGKQVHA 226
Query: 293 LAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCG 352
++ G ++N LV MY K G L+ +++L +++V+WNT++ + +
Sbjct: 227 YGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLE 285
Query: 353 TFDLLRKMQMKEEEMKPNEVTVLNVLTSCXXXXXXXXXXXXHGYSLRHG-FDNDELVANA 411
+ LR+M + E ++P+E T+ +VL +C H Y+L++G D + V +A
Sbjct: 286 ALEYLREMVL--EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSA 343
Query: 412 FVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS-DLEP 470
V Y C +S VF GM R + WNA+I GY+QN +AL F+ M S L
Sbjct: 344 LVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLA 403
Query: 471 DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLF 530
+ ++ ++ AC + R + IHGFV++ GL+ D F +L+ +Y K A +F
Sbjct: 404 NSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 531 DEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFS-----------IGVQPCEISIVSI 579
+MED+ LV+WNTMI GY ++ +A++L +M + + ++P I++++I
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 580 LSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDV 639
L +C+ LSAL GKE H YA+K L D V +++DMYAKCGCL+ SR+VFD++ K+V
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Query: 640 TSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQ 699
+WN +EAI+L M+ G KP+ TF+ + AC+H+G+V+ GL+ F
Sbjct: 584 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 700 MQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGAL 758
M+ + V+P +HYACVVD+LGRAG++ +A++L+ MP + + AG WSSLL + R + L
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 703
Query: 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIEL 818
++GE A+ L++LEP+ A +YVL++NIY+ + WD +R+ MKE+G++KE GCSWIE
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEH 763
Query: 819 GGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHXXXXXXKVNILRGHS 878
G +H FV GD+ HP+ E++ G L E++ K GY P T VLH K +L GHS
Sbjct: 764 GDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHS 823
Query: 879 EKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGV 938
EKLAI+FG+L T+ +RV KNLR+C DCH A K ISK+ +REI++RD +RFH F++G
Sbjct: 824 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGT 883
Query: 939 CSCGD 943
CSCGD
Sbjct: 884 CSCGD 888
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 311/864 (35%), Positives = 484/864 (56%)
Query: 82 KRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLK-TRNLFQWNALVSGFT 140
+R+H L+ + S+DF + +LI YS P S VF + +N++ WN+++ F+
Sbjct: 24 RRIHALVISLGLDSSDFF-SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFS 82
Query: 141 KNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDV 200
KN L+P+ L + +L ++++ PD +TFP VIKAC G+ D G V+ MG D+
Sbjct: 83 KNGLFPEALEFYGKL-RESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141
Query: 201 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260
FV NAL+ MY + + ++F+ MP R+LVSWNS+I G S +G+ E+ ++ ++
Sbjct: 142 FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN- 200
Query: 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLS 320
+PD TV +VLP V G +HG A+K G+ ++VNN LV MY K +
Sbjct: 201 -SWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPT 259
Query: 321 EAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTS 380
+A+ +FD+ + ++ VS+NT+I + V + +R ++ KP+ +TV +VL +
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMV---EESVRMFLENLDQFKPDLLTVSSVLRA 316
Query: 381 CXXXXXXXXXXXXHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSW 440
C + Y L+ GF + V N + YAKCG I+A +VF+ M+ + SW
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSW 376
Query: 441 NALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500
N++I GY Q+GD ++A+ F M + + D + LI T L L GK +H I+
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIK 436
Query: 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVL 560
+G+ D +L+ +Y C + + +F M V+WNT+I+ + + +
Sbjct: 437 SGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQV 496
Query: 561 FRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK 620
+M V P + + L C+ L+A RLGKE HC L+ ++ + ++I+MY+K
Sbjct: 497 TTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSK 556
Query: 621 CGCLEQSRRVFDRLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGI 680
CGCLE S RVF+R+ +DV +W ++A+E F M G PD+ F+ I
Sbjct: 557 CGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAI 616
Query: 681 LMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA 740
+ AC+H+GLV+ GL F +M+ + + P +EHYACVVD+L R+ K+ A + I MP +
Sbjct: 617 IYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKP 676
Query: 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800
DA IW+S+LR+CRT G ++ E+V++ ++EL PD +L SN YA KWD V ++R+
Sbjct: 677 DASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRK 736
Query: 801 RMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEA 860
+K++ + K G SWIE+G N+H F GD+ P+ E I L ++K GY P
Sbjct: 737 SLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPRE 796
Query: 861 VL-HXXXXXXKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVA 919
V + K ++ GHSE+LAI+FGLL T L+V KNLR+C DCH KLISK+
Sbjct: 797 VSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIV 856
Query: 920 EREIVIRDNKRFHHFRDGVCSCGD 943
REI++RD RFH F+DG CSC D
Sbjct: 857 GREILVRDANRFHLFKDGTCSCKD 880
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
Identities = 252/680 (37%), Positives = 387/680 (56%)
Query: 267 DVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILF 326
D T + +L ++ LG VH +A+KLGL L V+N+L++MY K A+ +F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 327 DKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCXXX-X 385
D + ++++SWN++I + G L MQ+ +KP++ T+ +VL +
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLF--MQLLRCGLKPDQYTMTSVLKAASSLPE 431
Query: 386 XXXXXXXXHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVF--HGMDSRTVSSWNAL 443
H ++++ +D V+ A + AY++ AE +F H D + +WNA+
Sbjct: 432 GLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFD---LVAWNAM 488
Query: 444 ICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGL 503
+ GY Q+ D K L F M D F++ ++ C L ++++GK++H + I++G
Sbjct: 489 MAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY 548
Query: 504 EGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRR 563
+ D + +L +Y+ C S+A+ FD + V+W TMI+G +N A +F +
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608
Query: 564 MFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC 623
M +GV P E +I ++ A S L+AL G++ H ALK TND FV S++DMYAKCG
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668
Query: 624 LEQSRRVFDRLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGILMA 683
++ + +F R++ ++T+WNA KE ++LF++M +LG KPD TF+G+L A
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728
Query: 684 CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAG 743
C+H+GLV K+ M + +KP++EHY+C+ D LGRAG + A LI M EA A
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788
Query: 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803
++ +LL +CR G + G++VA LLELEP + YVL+SN+YA + KWD++++ R MK
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMK 848
Query: 804 ERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLH 863
++K+ G SWIE+ IH FVV D + + E I + I + GY P T+ L
Sbjct: 849 GHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLV 908
Query: 864 XXXXXXKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREI 923
K L HSEKLA++FGLL T +RV KNLR+C DCHNA K I+KV REI
Sbjct: 909 DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREI 968
Query: 924 VIRDNKRFHHFRDGVCSCGD 943
V+RD RFH F+DG+CSCGD
Sbjct: 969 VLRDANRFHRFKDGICSCGD 988
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 2.6e-143, Sum P(2) = 2.6e-143
Identities = 205/549 (37%), Positives = 321/549 (58%)
Query: 410 NAFVVAYAKCGSEISAENVFHGMDSRTVS----SWNALICGYAQNGDHLKALDYFLQMTH 465
NA V Y++ G A +F M + +W+A I GYAQ G +AL QM
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 466 SDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR-------NGLEGDSFTGIS-LLSLY 517
S ++P+ ++ S++ C + +L GKEIH + I+ NG GD I+ L+ +Y
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNG-HGDENMVINQLIDMY 417
Query: 518 MHCEKSSSARVLFDEM--EDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ--PCE 573
C+K +AR +FD + +++ +V+W MI GYSQ+ +A+ L MF Q P
Sbjct: 418 AKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNA 477
Query: 574 ISIVSILSACSQLSALRLGKETHCYALKAILTN-DAFVACSIIDMYAKCGCLEQSRRVFD 632
+I L AC+ L+ALR+GK+ H YAL+ FV+ +IDMYAKCG + +R VFD
Sbjct: 478 FTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFD 537
Query: 633 RLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN 692
+ K+ +W + +EA+ +F++M +G K D T + +L AC+H+G+++
Sbjct: 538 NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQ 597
Query: 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSC 752
G++YF++M+ + V P EHYAC+VD+LGRAG+L+ A +LI EMP E +W + L C
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657
Query: 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAG 812
R +G +++GE A+ + EL + +Y L+SN+YA + +W DV +R M+ +G++K G
Sbjct: 658 RIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPG 717
Query: 813 CSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHXXXXXXKVN 872
CSW+E +F VGD HP +EI + ++I IGY P T LH K +
Sbjct: 718 CSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDD 777
Query: 873 ILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFH 932
+L HSEKLA+++G+L T + +R+ KNLR+C DCH A +S++ + +I++RD+ RFH
Sbjct: 778 LLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFH 837
Query: 933 HFRDGVCSC 941
HF++G CSC
Sbjct: 838 HFKNGSCSC 846
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
Identities = 300/880 (34%), Positives = 479/880 (54%)
Query: 65 TGVLLQAC-GHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDS 123
+GVL +AC G ++ +++H I + + N LI +YS GF +RRVFD
Sbjct: 190 SGVL-EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNP-LIDLYSRNGFVDLARRVFDG 247
Query: 124 LKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSF 183
L+ ++ W A++SG +KNE + + +F ++ + P + F V+ AC I +
Sbjct: 248 LRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYV-LGIMPTPYAFSSVLSACKKIESLEI 306
Query: 184 GSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSE 243
G +HG+ K+G D +V NAL+++Y + +F M +R+ V++N++I G S+
Sbjct: 307 GEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQ 366
Query: 244 NGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTREL 303
G+ ++ +L +M +G PD T+ +++ C+ +G + G +H KLG
Sbjct: 367 CGYGEKAMELFKRMH--LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 424
Query: 304 MVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMK 363
+ AL+++YAKC + A F + +NVV WN ++ A+ + D+ +F + R+MQ+
Sbjct: 425 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI- 483
Query: 364 EEEMKPNEVTVLNVLTSCXXXXXXXXXXXXHGYSLRHGFDNDELVANAFVVAYAKCGSEI 423
EE+ PN+ T ++L +C H ++ F + V + + YAK G
Sbjct: 484 -EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542
Query: 424 SAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACT 483
+A ++ + V SW +I GY Q KAL F QM + D + + + AC
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602
Query: 484 HLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNT 543
L++L G++IH +G D +L++LY C K + + F++ E ++WN
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 544 MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAI 603
+++G+ Q+ EA+ +F RM G+ + S + A S+ + ++ GK+ H K
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722
Query: 604 LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAXXXXXXXXXXXKEAIELFE 663
++ V ++I MYAKCG + + + F + K+ SWNA EA++ F+
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 782
Query: 664 KMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723
+M+ +P+ T VG+L AC+H GLV+ G+ YF M + + PK EHY CVVDML RA
Sbjct: 783 QMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRA 842
Query: 724 GKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783
G L A + I EMP + DA +W +LL +C + +++GE A LLELEP+ + YVL+S
Sbjct: 843 GLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLS 902
Query: 784 NIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWG 843
N+YA S+KWD + RQ+MKE+G++KE G SWIE+ +IHSF VGD HP +EI +
Sbjct: 903 NLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQ 962
Query: 844 RLEEQISKIGYKPYTEAVLHXXXXXXKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLR 903
L ++ S+IGY ++L+ K I+ HSEKLAISFGLL + + V KNLR
Sbjct: 963 DLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLR 1022
Query: 904 ICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
+C DCH K +SKV+ REI++RD RFHHF G CSC D
Sbjct: 1023 VCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKD 1062
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
Identities = 277/791 (35%), Positives = 454/791 (57%)
Query: 156 LSDTELKPDN-FTFPC--VIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 212
LS+ P N + P +++ C + ++ + + K GL + F L++++ +
Sbjct: 25 LSERNYIPANVYEHPAALLLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCR 81
Query: 213 CAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVV 272
V+E ++FE + + V +++++ G ++ ++ ++M + P V
Sbjct: 82 YGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMR--YDDVEPVVYNFT 139
Query: 273 TVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK 332
+L VC E + +G +HGL VK G + +L L +MYAKC ++EA+ +FD+ +
Sbjct: 140 YLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199
Query: 333 NVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCXXXXXXXXXXX 392
++VSWNTI+ +S G ++++ M EE +KP+ +T+++VL +
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMC--EENLKPSFITIVSVLPAVSALRLISVGKE 257
Query: 393 XHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGD 452
HGY++R GFD+ ++ A V YAKCGS +A +F GM R V SWN++I Y QN +
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 453 HLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGIS 512
+A+ F +M ++P S+ + AC L L RG+ IH + GL+ + S
Sbjct: 318 PKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNS 377
Query: 513 LLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPC 572
L+S+Y C++ +A +F +++ ++LVSWN MI G++QN P++A+ F +M S V+P
Sbjct: 378 LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPD 437
Query: 573 EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFD 632
+ VS+++A ++LS K H +++ L + FV +++DMYAKCG + +R +FD
Sbjct: 438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD 497
Query: 633 RLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN 692
+ ++ VT+WNA K A+ELFE+M KP+ TF+ ++ AC+H+GLVE
Sbjct: 498 MMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEA 557
Query: 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSC 752
GLK F M++ ++++ ++HY +VD+LGRAG+L++A+ I++MP + ++ ++L +C
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC 617
Query: 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAG 812
+ + + EK A+ L EL PD +VL++NIY + W+ V +R M +GL+K G
Sbjct: 618 QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPG 677
Query: 813 CSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHXXXXXXKVN 872
CS +E+ +HSF G HP+ ++I +L I + GY P T VL K
Sbjct: 678 CSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQ 736
Query: 873 ILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFH 932
+L HSEKLAISFGLL TT T+ V KNLR+C DCHNA K IS V REIV+RD +RFH
Sbjct: 737 LLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFH 796
Query: 933 HFRDGVCSCGD 943
HF++G CSCGD
Sbjct: 797 HFKNGACSCGD 807
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
Identities = 285/831 (34%), Positives = 461/831 (55%)
Query: 116 DSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC 175
++ +FD R+ + +L+ GF+++ + +F+ + ++ D F V+K
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI-HRLGMEMDCSIFSSVLKVS 103
Query: 176 GGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWN 235
+ D FG +H K G + DV V +L+ Y K + ++ K+F+ M ERN+V+W
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163
Query: 236 SIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAV 295
++I G + N + E L ++M EG P+ T L V A EG G+ VH + V
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQN--EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 296 KLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFD 355
K GL + + V+N+L+++Y KCG + +A+ILFDK K+VV+WN++I ++ G
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 356 LLRKMQMKEEEMKPNEVTVLNVLTSCXXXXXXXXXXXXHGYSLRHGFDNDELVANAFVVA 415
+ M++ + +E + +V+ C H +++GF D+ + A +VA
Sbjct: 282 MFYSMRLNYVRL--SESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339
Query: 416 YAKCGSEISAENVFHGMDS-RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFS 474
Y+KC + + A +F + V SW A+I G+ QN +A+D F +M + P+ F+
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 475 IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME 534
S+IL + S E+H V++ E S G +LL Y+ K A +F ++
Sbjct: 400 Y-SVILTALPVIS---PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID 455
Query: 535 DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSA-LRLGK 593
DK +V+W+ M+AGY+Q AI +F + G++P E + SIL+ C+ +A + GK
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAXXXXXXXXX 653
+ H +A+K+ L + V+ +++ MYAK G +E + VF R ++KD+ SWN+
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 654 XXKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY 713
+A+++F++M K D TF+G+ AC HAGLVE G KYF M + + P EH
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635
Query: 714 ACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773
+C+VD+ RAG+L+ A K+I MP A + IW ++L +CR + ++G A+ ++ ++P
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 695
Query: 774 DKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHP 833
+ + YVL+SN+YA S W + +R+ M ER ++KE G SWIE+ +SF+ GD HP
Sbjct: 696 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHP 755
Query: 834 EWEEIRGMWGRLEEQISKIGYKPYTEAVLHXXXXXXKVNILRGHSEKLAISFGLLKTTKD 893
++I L ++ +GY+P T VL K +L HSE+LAI+FGL+ T K
Sbjct: 756 LKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG 815
Query: 894 LTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFR-DGVCSCGD 943
L + KNLR+C DCH KLI+K+ EREIV+RD+ RFHHF DGVCSCGD
Sbjct: 816 SPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD 866
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
Identities = 288/878 (32%), Positives = 468/878 (53%)
Query: 68 LLQACGHEKDI-EIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT 126
L+ ACG + G +VH ++ S S D ++T ++ +Y + G SR+VF+ +
Sbjct: 64 LVTACGRSGSMFREGVQVHGFVAKSGLLS-DVYVSTAILHLYGVYGLVSCSRKVFEEMPD 122
Query: 127 RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186
RN+ W +L+ G++ +V+ I+ + + +N + VI +CG + D S G
Sbjct: 123 RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNEN-SMSLVISSCGLLKDESLGRQ 181
Query: 187 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGF 246
+ G K GL + V N+LI+M G V+ +F+ M ER+ +SWNSI ++NG
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGH 241
Query: 247 SCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVN 306
ESF + M + + TV T+L V + G +HGL VK+G + V
Sbjct: 242 IEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 299
Query: 307 NALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366
N L+ MYA G EA ++F + K+++SWN+++ +F G LL M +
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359
Query: 367 MKPNEVTVLNVLTSCXXXXXXXXXXXXHGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426
+ N VT + L +C HG + G ++++ NA V Y K G +
Sbjct: 360 V--NYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 417
Query: 427 NVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLK 486
V M R V +WNALI GYA++ D KAL F M + + ++ S++ AC
Sbjct: 418 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 477
Query: 487 SL-HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMI 545
L RGK +H +++ G E D SL+++Y C SS++ LF+ ++++++++WN M+
Sbjct: 478 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAML 537
Query: 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILT 605
A + + E + L +M S GV + S LSA ++L+ L G++ H A+K
Sbjct: 538 AANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFE 597
Query: 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAXXXXXXXXXXXKEAIELFEKM 665
+D+F+ + DMY+KCG + + ++ ++ + SWN +E F +M
Sbjct: 598 HDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEM 657
Query: 666 LALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725
L +G KP TFV +L AC+H GLV+ GL Y+ + + ++P +EH CV+D+LGR+G+
Sbjct: 658 LEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGR 717
Query: 726 LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785
L +A I +MP + + +W SLL SC+ +G L G K A+ L +LEP+ YVL SN+
Sbjct: 718 LAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNM 777
Query: 786 YAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRL 845
+A + +W+DV +R++M + ++K+ CSW++L + SF +GD HP+ EI +
Sbjct: 778 FATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDI 837
Query: 846 EEQISKIGYKPYTEAVLHXXXXXXKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRIC 905
++ I + GY T L K + L HSE+LA+++ L+ T + T+R+ KNLRIC
Sbjct: 838 KKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRIC 897
Query: 906 VDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
DCH+ K +S+V R IV+RD RFHHF G+CSC D
Sbjct: 898 SDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKD 935
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 270/779 (34%), Positives = 418/779 (53%)
Query: 164 DNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLF 223
D T V++ C + G V G + D + + L MY C ++E ++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 224 EVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGN 283
+ + + WN ++ +++G S L KMM G D T V + +
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS--SGVEMDSYTFSCVSKSFSSLRS 210
Query: 284 VDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGA 343
V G +HG +K G V N+LV Y K + A+ +FD+ ++V+SWN+II
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270
Query: 344 FSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCXXXXXXXXXXXXHGYSLRHGFD 403
+ G L +QM ++ + T+++V C H ++ F
Sbjct: 271 YVSNG--LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328
Query: 404 NDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQM 463
++ N + Y+KCG SA+ VF M R+V S+ ++I GYA+ G +A+ F +M
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388
Query: 464 THSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKS 523
+ PD++++ +++ C + L GK +H ++ N L D F +L+ +Y C
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 448
Query: 524 SSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIG-VQPCEISIVSILSA 582
A ++F EM K ++SWNT+I GYS+N EA+ LF + P E ++ +L A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508
Query: 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSW 642
C+ LSA G+E H Y ++ +D VA S++DMYAKCG L + +FD + KD+ SW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 643 NAXXXXXXXXXXXKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQK 702
KEAI LF +M G + D +FV +L AC+H+GLV+ G ++F+ M+
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628
Query: 703 LHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGE 762
++P +EHYAC+VDML R G L A++ I MP DA IW +LL CR + +K+ E
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688
Query: 763 KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNI 822
KVA+ + ELEP+ YVL++NIYA +EKW+ V+ +R+R+ +RGL+K GCSWIE+ G +
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Query: 823 HSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHXXXXXXKVNILRGHSEKLA 882
+ FV GD+ +PE E I ++ ++ + GY P T+ L K L GHSEKLA
Sbjct: 749 NIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLA 808
Query: 883 ISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSC 941
++ G++ + +RV KNLR+C DCH AK +SK+ REIV+RD+ RFH F+DG CSC
Sbjct: 809 MALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC 867
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WN60 | PPR48_ARATH | No assigned EC number | 0.5772 | 0.9580 | 0.9412 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 953 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-144 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-97 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-79 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-45 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 585 bits (1509), Expect = 0.0
Identities = 279/791 (35%), Positives = 454/791 (57%), Gaps = 9/791 (1%)
Query: 155 LLSDTELK--PDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 212
L S EL+ D + + + C V GS V A V + NA+++M+ +
Sbjct: 74 LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133
Query: 213 CAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVV 272
+ +F MPER+L SWN ++ G ++ G+ E+ L +M+ G PDV T
Sbjct: 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFP 191
Query: 273 TVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK 332
VL C G ++ G VH V+ G ++ V NAL+ MY KCG + A+++FD+ +
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 333 NVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKE 392
+ +SWN +I + G+ +L M+E + P+ +T+ +V+++C + +E
Sbjct: 252 DCISWNAMISGYFENGECLEGLELF--FTMRELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 393 LHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGD 452
+HGY ++ GF D V N+ + Y GS AE VF M+++ SW A+I GY +NG
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369
Query: 453 HLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGIS 512
KAL+ + M ++ PD +I S++ AC L L G ++H R GL +
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 513 LLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPC 572
L+ +Y C+ A +F + +K ++SW ++IAG N EA++ FR+M + ++P
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPN 488
Query: 573 EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFD 632
+++++ LSAC+++ AL GKE H + L+ + D F+ +++D+Y +CG + + F+
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 633 RLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN 692
+KDV SWN ++ G+ HG G A+ELF +M+ G PD TF+ +L AC+ +G+V
Sbjct: 549 -SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSC 752
GL+YF M++ +++ P L+HYACVVD+LGRAGKL +A+ I +MP D +W +LL +C
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667
Query: 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAG 812
R + +++GE A+ + EL+P+ Y+L+ N+YA + KWD+V +R+ M+E GL + G
Sbjct: 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727
Query: 813 CSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVN 872
CSW+E+ G +H+F+ D HP+ +EI + E++ G + + E+ E K +
Sbjct: 728 CSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI-EVSKDD 786
Query: 873 ILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFH 932
I GHSE+LAI+FGL+ T + + V KNL +C +CHN K ISK+ REI +RD ++FH
Sbjct: 787 IFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFH 846
Query: 933 HFRDGVCSCGD 943
HF+DG CSCGD
Sbjct: 847 HFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-144
Identities = 201/569 (35%), Positives = 333/569 (58%), Gaps = 4/569 (0%)
Query: 377 VLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRT 436
++ +C + +K ++ + GF+ D+ + N ++ + KCG I A +F M R
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188
Query: 437 VSSWNALICGYAQNGDHLKALDYFLQMTH--SDLEPDLFSIGSLILACTHLKSLHRGKEI 494
++SW +I G G++ +A F +M SD EP F + ++ A L S G+++
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV--MLRASAGLGSARAGQQL 246
Query: 495 HGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLP 554
H V++ G+ GD+F +L+ +Y C AR +FD M +K+ V+WN+M+AGY+ +
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306
Query: 555 VEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSI 614
EA+ L+ M GV + + ++ S+L+ L K+ H ++ D ++
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT 674
+D+Y+K G +E +R VFDR+ K++ SWNA+I G+G HG G +A+E+FE+M+A G P+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734
TF+ +L AC ++GL E G + F M + H +KP+ HYAC++++LGR G LD+A+ +I
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
Query: 735 EMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794
P + +W++LL +CR + L++G A+ L + P+K NYV++ N+Y S + +
Sbjct: 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546
Query: 795 VRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGY 854
+ + +K +GL C+WIE+ HSF GD +HP+ EI L ++IS+ GY
Sbjct: 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606
Query: 855 KPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKL 914
+L +++E+E+ R HSEKLAI+FGL+ T++ L++ ++ RIC DCH K
Sbjct: 607 VAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKF 666
Query: 915 ISKVAEREIVIRDNKRFHHFRDGVCSCGD 943
I+ V +REIV+RD RFHHF+ G CSCGD
Sbjct: 667 IALVTKREIVVRDASRFHHFKLGKCSCGD 695
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (836), Expect = 2e-97
Identities = 199/649 (30%), Positives = 322/649 (49%), Gaps = 29/649 (4%)
Query: 13 SSLSLSAKTNNASTEGLHFLQEITTLCEESKSLNKALSLLQ--ENLHNADLKEATGVLLQ 70
S + S+ + + S L LC + L +AL LL+ + L ++A L +
Sbjct: 42 SVAASSSSSTHDSNSQLR------ALCSHGQ-LEQALKLLESMQELRVPVDEDAYVALFR 94
Query: 71 ACGHEKDIEIGKRVHELISAS-TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNL 129
C ++ +E G RV +S + +++M+ G + + VF + R+L
Sbjct: 95 LCEWKRAVEEGSRVCSRALSSHPSLGVR--LGNAMLSMFVRFGELVHAWYVFGKMPERDL 152
Query: 130 FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHG 189
F WN LV G+ K + + L ++ +L ++PD +TFPCV++ CGGI D++ G VH
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 190 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCE 249
+ G DV V NALI MY KC V +F+ MP R+ +SWN++I G ENG E
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271
Query: 250 SFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNAL 309
+L M PD+ T+ +V+ C G+ LG +HG VK G ++ V N+L
Sbjct: 272 GLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 310 VDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKP 369
+ MY G EA+ +F + K+ VSW +I + G + M+ + + P
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ--DNVSP 387
Query: 370 NEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVF 429
+E+T+ +VL++C+ +L +LH + R G + +VANA + Y+KC A VF
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 430 HGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLH 489
H + + V SW ++I G N +AL +F QM L+P+ ++ + + AC + +L
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALM 506
Query: 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYS 549
GKEIH V+R G+ D F +LL LY+ C + + A F+ E K +VSWN ++ GY
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYV 565
Query: 550 QNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKE-----THCYALKAIL 604
+ A+ LF RM GV P E++ +S+L ACS+ + G E Y +I
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---SIT 622
Query: 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIH 652
N AC ++D+ + G L ++ +++ D W A++ IH
Sbjct: 623 PNLKHYAC-VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 277 bits (709), Expect = 1e-79
Identities = 152/459 (33%), Positives = 238/459 (51%), Gaps = 5/459 (1%)
Query: 235 NSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLA 294
NS + +G ++ LL M E D V + +C + V+ G V A
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQ--ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112
Query: 295 VKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTF 354
+ + + + NA++ M+ + G L A +F K +++ SWN ++G ++ AG
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 355 DLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVV 414
L +M ++P+ T VL +C +L +E+H + +R GF+ D V NA +
Sbjct: 173 CLYHRMLWAG--VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 415 AYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFS 474
Y KCG +SA VF M R SWNA+I GY +NG+ L+ L+ F M ++PDL +
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 475 IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME 534
I S+I AC L G+E+HG+V++ G D SL+ +Y+ A +F ME
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 535 DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKE 594
K VSW MI+GY +N LP +A+ + M V P EI+I S+LSAC+ L L +G +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 595 THCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGY 654
H A + L + VA ++I+MY+KC C++++ VF + +KDV SW +II G ++
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENG 693
EA+ F +ML L KP++ T + L AC G + G
Sbjct: 471 CFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 5e-51
Identities = 96/315 (30%), Positives = 165/315 (52%), Gaps = 6/315 (1%)
Query: 68 LLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTR 127
L++AC K I K V+ + S+ F D + R++ M+ CG +D+RR+FD + R
Sbjct: 129 LVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 128 NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGV 187
NL W ++ G Y + ++F E+ D + TF +++A G+ G +
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 188 HGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFS 247
H K G++GD FVS ALI MY KC +E+ +F+ MPE+ V+WNS++ G + +G+S
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306
Query: 248 CESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN 307
E+ L +M + G D T ++ + + ++ H ++ G +++ N
Sbjct: 307 EEALCLYYEM--RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 308 ALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEM 367
ALVD+Y+K G + +A+ +FD+ KN++SWN +I + G ++ + M E +
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER--MIAEGV 422
Query: 368 KPNEVTVLNVLTSCS 382
PN VT L VL++C
Sbjct: 423 APNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 6e-49
Identities = 108/354 (30%), Positives = 178/354 (50%), Gaps = 41/354 (11%)
Query: 477 SLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDK 536
+L+ AC LKS+ K ++ V +G E D + +L +++ C AR LFDEM ++
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETH 596
+L SW T+I G EA LFR M+ G + V +L A + L + R G++ H
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 597 CYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGK 656
C LK + D FV+C++IDMY+KCG +E +R VFD + +K +WN+++ G+ +HGY +
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 657 EAIELFEKMLALGHKPDTFTFVGILMACN-----------HAGLVENGLKYFSQMQKLHA 705
EA+ L+ +M G D FTF ++ + HAGL+ G
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF----------- 356
Query: 706 VKPKLEHYA--CVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEK 763
L+ A +VD+ + G+++DA + MP + + W++L+ YG G K
Sbjct: 357 ---PLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAG---YGNHGRGTK 409
Query: 764 VAKTLLELEPDK-AENY-----VLVSNIYAG-SEK-WDDVRMMRQ--RMKERGL 807
+ + + A N+ VL + Y+G SE+ W+ + M + R+K R +
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 1e-45
Identities = 100/329 (30%), Positives = 169/329 (51%), Gaps = 6/329 (1%)
Query: 167 TFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVM 226
T+ +++AC + + V+ G D ++ N ++ M+ KC + + +LF+ M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 227 PERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDL 286
PERNL SW +II G + G E+F L +M E+G + T V +L AG G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMW--EDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 287 GILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSM 346
G +H +K G+ + V+ AL+DMY+KCG + +A+ +FD K V+WN+++ +++
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 347 AGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDE 406
G L +M++ + ++ T ++ S + L K+ H +R GF D
Sbjct: 303 HGYSEEALCLYY--EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD- 359
Query: 407 LVAN-AFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTH 465
+VAN A V Y+K G A NVF M + + SWNALI GY +G KA++ F +M
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 466 SDLEPDLFSIGSLILACTHLKSLHRGKEI 494
+ P+ + +++ AC + +G EI
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 6e-23
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 23/131 (17%)
Query: 812 GCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKV 871
GC W E + GD HP +E L ++I G P T+ + H+++ EE
Sbjct: 2 GCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 872 ------NILRGHSEKLAISFGLLKTTKDLTLRVCKNL-RICVDCHNAAKLISKVAEREIV 924
+L H+EK A+++GLL T R+ K L R+C DCH + I+K REI+
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 925 IRDNKRFHHFR 935
+RD RFHHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-08
Identities = 68/298 (22%), Positives = 136/298 (45%), Gaps = 30/298 (10%)
Query: 216 VEEMVKLFEVMPERNLVSWNSI--ICGSSENGFSCESFDLLIKMMGC--EEGFIPDVATV 271
V+E + +++ L ++N + +C SS++ D ++++ E G D
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQD------IDGALRVLRLVQEAGLKADCKLY 475
Query: 272 VTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEA----QILFD 327
T++ CA G VD V V G+ + AL+D A+ G +++A I+
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 328 KNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSEL 387
KN + V +N +I A +G V FD+L +M+ + + P+ +TV ++ +C+ ++
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 388 LSLKE----LHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSS---- 439
KE +H Y+++ G V V + ++ G A +++ M + V
Sbjct: 596 DRAKEVYQMIHEYNIK-GTPE---VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 440 WNALI--CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIH 495
++AL+ G+A + D KA + ++ S SL+ AC++ K+ + E++
Sbjct: 652 FSALVDVAGHAGDLD--KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 3e-08
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682
DV ++N +I G+ G +EA++LF +M G KP+ +T+ IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY-SILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 89/418 (21%), Positives = 173/418 (41%), Gaps = 80/418 (19%)
Query: 330 NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLS 389
N + ++N ++ + + D+ G +LR +Q E +K + ++++C++ ++ +
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ--EAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 390 LKELHGYSLRHGFDNDELVAN-----AFVVAYAKCGSEISAENVFHGMDSRTVSS----W 440
+ E+ H N + AN A + A+ G A + M S+ V +
Sbjct: 491 MFEVF-----HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 441 NALICGYAQNGDHLKALDYFLQM---THSDLEPDLFSIGSLILACTHLKSLHRGKEIHGF 497
NALI Q+G +A D +M TH ++PD ++G+L+ AC + + R KE++
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 498 VIRNGLEG--DSFTGISLLSLYMHCEKSSS---ARVLFDEME------DKSLVSWNTMIA 546
+ ++G + +T I++ S C + A ++D+M+ D+ S +A
Sbjct: 605 IHEYNIKGTPEVYT-IAVNS----CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQL----SALRLGKETHCYALK- 601
G++ +A + + G++ +S S++ ACS AL L ++ L+
Sbjct: 660 GHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 602 AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIEL 661
+ T +A + A C Q + A+E+
Sbjct: 718 TVSTMNAL-------ITALCEG-NQ----LPK------------------------ALEV 741
Query: 662 FEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719
+M LG P+T T+ +L+A + GL SQ K +KP L C+ +
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 332 KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVT 373
+VV++NT+I + G V L +MK+ +KPN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFN--EMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 437 VSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILAC 482
V ++N LI GY + G +AL F +M ++P++++ LI
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585
+V++NT+I GY + EA+ LF M G++P + ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV 569
V++N++I+GY + EA+ LF+ M GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPD 471
++N LI G + G +AL+ F +M +EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 77/347 (22%), Positives = 134/347 (38%), Gaps = 63/347 (18%)
Query: 155 LLSDTELKPDNFTFPCVIKACG--GIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK 212
L+ + LK D + +I C G D F H M G+ +V ALI
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMF-EVFHEMVNA-GVEANVHTFGALI---DG 516
Query: 213 CAFVEEMVKLF---------EVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEG 263
CA ++ K F V P+R V +N++I ++G +FD+L +M
Sbjct: 517 CARAGQVAKAFGAYGIMRSKNVKPDR--VVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 264 FIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQ 323
PD TV ++ CA G VD V+ + + + V V+ ++ G A
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 324 ILFDKNNNKNV----VSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLT 379
++D K V V ++ ++ AGD+ F++L+ +++ +K V+ +++
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ--DARKQGIKLGTVSYSSLMG 692
Query: 380 SCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---- 435
+CS NA + A ++ + S
Sbjct: 693 ACS---------------------------NA--------KNWKKALELYEDIKSIKLRP 717
Query: 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILAC 482
TVS+ NALI + KAL+ +M L P+ + L++A
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT 674
++N +I G G +EA+ELF++M G +PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 45/184 (24%)
Query: 613 SIIDMYAKCGCLEQSRRVFDRLKDKDVTS----WNAIIGGHGIHGYGKEAIELFEKMLAL 668
++ID A+ G + ++ + ++ K+V +NA+I G G A ++ +M A
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 669 GH--KPDTFTFVGILM-ACNHAGLVENGLKYFSQMQK-------------LHA------- 705
H PD T VG LM AC +AG V+ + + + + +++
Sbjct: 572 THPIDPDHIT-VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 706 --------------VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA---DAGIWSSL 748
VKP ++ +VD+ G AG LD AF+++ + ++ +SSL
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 749 LRSC 752
+ +C
Sbjct: 691 MGAC 694
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 641 SWNAIIGGHGIHGYGKEAIELFEKMLALG 669
++N++I G+ G +EA+ELF++M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 438 SSWNALICGYAQNGDHLKALDYFLQM 463
++N+LI GY + G +AL+ F +M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.23 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.07 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.07 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.02 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.01 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.69 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.61 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.4 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.38 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.3 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.21 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.18 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.08 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.01 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.79 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.49 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.2 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.07 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.07 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.03 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 95.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 95.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.62 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.3 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.51 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.79 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.71 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.37 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.05 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.99 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.76 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.6 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.5 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.99 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.83 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.76 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.78 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.9 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.68 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.26 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.76 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.86 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.52 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.7 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.59 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.72 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.49 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.06 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 82.78 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 82.53 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.17 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.92 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.31 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-150 Score=1371.46 Aligned_cols=811 Identities=34% Similarity=0.648 Sum_probs=799.9
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHH
Q 037236 125 KTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSN 204 (953)
Q Consensus 125 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 204 (953)
..++..++|.++.+|++.|++++|+.+|++|.+ .|++|+..+|..++++|...+.+..|.++|..+.+.|..++..++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 356777899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCc
Q 037236 205 ALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNV 284 (953)
Q Consensus 205 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~ 284 (953)
+|+++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++| ...|+.||..||+++|++|+..+++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M--~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM--LWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999 7889999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhcc
Q 037236 285 DLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKE 364 (953)
Q Consensus 285 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 364 (953)
..+.++|..+.+.|+.||..++|+||++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHH
Q 037236 365 EEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALI 444 (953)
Q Consensus 365 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 444 (953)
+.||..||+.++.+|+..++.+.+.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||
T Consensus 284 --~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 284 --VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred --CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChh
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSS 524 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 524 (953)
.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 525 SARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAIL 604 (953)
Q Consensus 525 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 604 (953)
+|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.++++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMAC 684 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~ 684 (953)
.++..++++|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
++.|++++|.++|++|.+.+|+.|+..||++|+++|+|+|+++||.+++++|+.+||..+|++|+++|+.||+.+.|+.+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGR 844 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 844 (953)
++++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.|||||||+++++|.|++||++||+.++||.+|++
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCCCccccccchHHHHhhhhhhhHHHHHHHcccCCCCCCcEEEEeccccCCcchhhHHHHhhhcCceEE
Q 037236 845 LEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIV 924 (953)
Q Consensus 845 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nlr~c~~ch~~~~~~s~~~~~~~~ 924 (953)
|..+|++.||+||++.+++ ++|++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||
T Consensus 760 l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 838 (857)
T PLN03077 760 FYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838 (857)
T ss_pred HHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEE
Confidence 9999999999999999884 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCc
Q 037236 925 IRDNKRFHHFRDGVCSCGD 943 (953)
Q Consensus 925 ~~~~~~~h~~~~g~csc~~ 943 (953)
|||.+|||||++|+|||||
T Consensus 839 ~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 839 VRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EecCCcceeCCCCcccCCC
Confidence 9999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-122 Score=1096.97 Aligned_cols=614 Identities=33% Similarity=0.614 Sum_probs=606.2
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHH
Q 037236 331 NKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVAN 410 (953)
Q Consensus 331 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 410 (953)
.++.++|+.+|.+|.+.|++++|+++|+.|...+. ..||..||+.++.+|.+.++.+.+.++|..+.+.|+.||..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 35778999999999999999999999999987542 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccch
Q 037236 411 AFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 411 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
.|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHG 650 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 650 (953)
||..||++++.+|++.|.++.|+++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~ 730 (953)
++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..||++|+++|+++|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccC
Q 037236 731 KLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKE 810 (953)
Q Consensus 731 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~ 810 (953)
+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|++|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhcCcccCCCccccccchHHHHhhhhhhhHHHHHHHcccCC
Q 037236 811 AGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKT 890 (953)
Q Consensus 811 ~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~ 890 (953)
||+|||++++++|.|++||++||+.++|+++|++|..+|++.||+||+.++++++++++|+..+++||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccCCcchhhHHHHhhhcCceEEEecCCcccccccccccCCcCC
Q 037236 891 TKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGDIG 945 (953)
Q Consensus 891 ~~~~~~~~~~nlr~c~~ch~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 945 (953)
|+|.||||+||||||+|||+|+||||++++|||||||.+|||||++|+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-95 Score=885.80 Aligned_cols=677 Identities=29% Similarity=0.501 Sum_probs=659.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc--CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchh
Q 037236 23 NASTEGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFII 100 (953)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (953)
.++++...+|.++.+|++.| .+++|+.+|+.|.. .+|+..+|..++.+|...+.+..|.++|..+. +.+..+++.+
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 123 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHG-QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL-SSHPSLGVRL 123 (857)
T ss_pred hcccchhhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHH-HcCCCCCchH
Confidence 34567788999999999999 99999999999988 78999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCC
Q 037236 101 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIAD 180 (953)
Q Consensus 101 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~ 180 (953)
+|+||.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|.. .|+.||.+||+.+|++|+..++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhc
Q 037236 181 VSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260 (953)
Q Consensus 181 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 260 (953)
+..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++| .
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M--~ 280 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--R 280 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHH
Q 037236 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTI 340 (953)
Q Consensus 261 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~l 340 (953)
..|+.||..||+.+|.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|++++|+++|++|.+||+++||+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
|.+|++.|++++|+++|++|...| +.||..||..++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g--~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDN--VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHH
Q 037236 421 SEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 500 (953)
++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 501 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+.+|
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHhccccchHHHHHHHHHHH-HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHH
Q 037236 581 SACSQLSALRLGKETHCYAL-KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 658 (953)
.+|++.|.+++|.++++.|. +.|+.|+..+|++++++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999998 68999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 037236 659 IELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE 711 (953)
Q Consensus 659 ~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 711 (953)
....+++.+ +.| +...|..+.+.|...|++++|.++.+.|. ..|+++++.
T Consensus 677 e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~-~~g~~k~~g 727 (857)
T PLN03077 677 ELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR-ENGLTVDPG 727 (857)
T ss_pred HHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH-HcCCCCCCC
Confidence 999999988 678 56678888899999999999999999994 578888754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=627.45 Aligned_cols=474 Identities=26% Similarity=0.393 Sum_probs=459.3
Q ss_pred CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccC-CCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHH
Q 037236 228 ERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEE-GFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVN 306 (953)
Q Consensus 228 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 306 (953)
.++.++|+++|.+|.+.|++++|+++|+.| ... +..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m--~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEIL--EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 467889999999999999999999999999 554 57899999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccc
Q 037236 307 NALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSE 386 (953)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~ 386 (953)
|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.| +.||..||..++.+|+..+.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 037236 387 LLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS 466 (953)
Q Consensus 387 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 466 (953)
...+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHH
Q 037236 467 DLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIA 546 (953)
Q Consensus 467 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 546 (953)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCCHH
Q 037236 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK-AILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 547 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 626 QSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 626 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.| +..+|..+++.|++.|++++|.++++.|. .
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~ 556 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-R 556 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-H
Confidence 9999999998 78999999999999999999999999999976 677 46799999999999999999999999995 4
Q ss_pred cCCCC
Q 037236 704 HAVKP 708 (953)
Q Consensus 704 ~~~~p 708 (953)
.|+.+
T Consensus 557 ~g~~k 561 (697)
T PLN03081 557 KGLSM 561 (697)
T ss_pred cCCcc
Confidence 67654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-66 Score=612.49 Aligned_cols=523 Identities=18% Similarity=0.242 Sum_probs=436.3
Q ss_pred CCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCch-----hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHH
Q 037236 95 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLF-----QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFP 169 (953)
Q Consensus 95 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 169 (953)
.++...|..+++.|++.|++++|.++|++|++++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 445566666777777777777788888777765544 344556667777777777777777643 7777788
Q ss_pred HHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCC----CCCeecHHHHHHHHHcCC
Q 037236 170 CVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGSSENG 245 (953)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 245 (953)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 8888888888888888888888888888888888888888888888888888888887 478888888888888888
Q ss_pred CchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHH--hCCCCCchHHHHHHHhhHhcCChhHHH
Q 037236 246 FSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVK--LGLTRELMVNNALVDMYAKCGFLSEAQ 323 (953)
Q Consensus 246 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 323 (953)
++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 522 ~~eeAl~lf~~M--~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIM--RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888 7888899999999999999999999999999998876 578889999999999999999999999
Q ss_pred HHHhcCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 324 ILFDKNNN----KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 324 ~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99988865 566899999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCcccHHHHhccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 400 HGFDNDELVANAFVVAYAKCGSEISAENVFHGMD----SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 400 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
.|+.||..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999984 679999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH----hcCChhHHHHHHHhcccCCcccHHHHHHHHHhc
Q 037236 476 GSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM----HCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQN 551 (953)
Q Consensus 476 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 551 (953)
+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~--------- 828 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT--------- 828 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH---------
Confidence 9999999999999999999999999999999999999998743 334443344444433333334444
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 552 KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
++|+.+|++|.+.|+.||..||+.+|.++. +.+..+.+..++
T Consensus 829 ---~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~-----------------------------------~~~~~~~~~~m~ 870 (1060)
T PLN03218 829 ---SWALMVYRETISAGTLPTMEVLSQVLGCLQ-----------------------------------LPHDATLRNRLI 870 (1060)
T ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-----------------------------------ccccHHHHHHHH
Confidence 569999999999999998888888774432 234455566666
Q ss_pred hhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 037236 632 DRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF 675 (953)
Q Consensus 632 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~ 675 (953)
+.|. .++..+|+++|.++.+. .++|+.+|++|...|+.|+..
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6554 45677888888887432 367999999999999988765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=612.89 Aligned_cols=520 Identities=18% Similarity=0.247 Sum_probs=474.4
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecH-----HHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhh
Q 037236 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW-----NSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVAT 270 (953)
Q Consensus 196 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t 270 (953)
..++...|..++..|+++|++++|+++|+.|++++.+.| +.++.+|.+.|..++|+.+|+.| .. ||..|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M--~~----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI--RN----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--CC----CCHHH
Confidence 345677899999999999999999999999998776654 45667799999999999999999 43 99999
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC----CCCcccHHHHHHHHHc
Q 037236 271 VVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN----NKNVVSWNTIIGAFSM 346 (953)
Q Consensus 271 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~ 346 (953)
|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCCccc
Q 037236 347 AGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR--HGFDNDELVANAFVVAYAKCGSEIS 424 (953)
Q Consensus 347 ~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~ 424 (953)
.|++++|+++|++|...| +.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||.+|+++|++++
T Consensus 520 ~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999 999999999999999999999999999999986 6899999999999999999999999
Q ss_pred HHHHhccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHH
Q 037236 425 AENVFHGMDS----RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500 (953)
Q Consensus 425 A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 500 (953)
|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999975 466999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcc----cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME----DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 501 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
.|+.|+..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH----HhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY----AKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIH 652 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 652 (953)
+.++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...++...|+.+...+...|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~--------- 828 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT--------- 828 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH---------
Confidence 999999999999999999999999999999999999999874 3444444444445443333444443
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.|. ..+..|+..+|++|++.+++. .++|..+
T Consensus 829 ---~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 829 ---SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 5699999999999999999999999977778888888877777773 355667788999999998543 4789999
Q ss_pred HHhCCC
Q 037236 733 IIEMPE 738 (953)
Q Consensus 733 ~~~~~~ 738 (953)
+++|..
T Consensus 903 ~~em~~ 908 (1060)
T PLN03218 903 LEEAAS 908 (1060)
T ss_pred HHHHHH
Confidence 999864
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=415.19 Aligned_cols=754 Identities=11% Similarity=-0.026 Sum_probs=546.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLI 105 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li 105 (953)
....+..+...+...| ++++|...|+++.. .|.+..++..+...+...|+++.|..++.++. .. .+++...+..+.
T Consensus 124 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~~~ 200 (899)
T TIGR02917 124 AAELLALRGLAYLGLG-QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL-TA-DPGNVDALLLKG 200 (899)
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCChHHHHHHH
Confidence 3455666666777777 77777777777766 44455666677777777777777777777776 33 245566666677
Q ss_pred HHHHhcCChhhHHHHhhcCCC---CCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChh
Q 037236 106 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVS 182 (953)
Q Consensus 106 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~ 182 (953)
..+...|++++|...|++... .+..+|..++..+...|++++|...++.+.+ .. +.+..........+...|+++
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 278 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLK-KA-PNSPLAHYLKALVDFQKKNYE 278 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCchHHHHHHHHHHHhcCHH
Confidence 777777777777777776532 2445677777777777777778777777766 22 222222323333345667777
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--C-CeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 183 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 183 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
.|...+..+.+.+.. +...+..+...+...|++++|...|+.+.+ | +...+..+...+.+.|++++|...+..+
T Consensus 279 ~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-- 355 (899)
T TIGR02917 279 DARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA-- 355 (899)
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 777777777765533 222333445566677888888888776643 2 3445666677778888888888888877
Q ss_pred ccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCccc
Q 037236 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVS 336 (953)
Q Consensus 260 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~ 336 (953)
.. ..+.+...+..+...+...|++++|.+++..+.+.. +.+...+..+...+...|++++|.+.|++... .+...
T Consensus 356 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 356 LG-LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred Hh-cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 22 234456677777777788888888888888777654 33556667777778888888888888876543 23445
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 337 WNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
+..++..+.+.|++++|+++++.+... .+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+...+
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKK---QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 666777788888888888888887764 34556677777777888888888888888877653 33455677777888
Q ss_pred HhcCCcccHHHHhccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhH
Q 037236 417 AKCGSEISAENVFHGMDS---RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKE 493 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 493 (953)
...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|+++.+..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888877643 356677888888888888888888888887653 3345566677777888888888888
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 494 IHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
++..+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 888877654 33566788888888888888888888887653 345577778888888888888888888887653 3
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGG 648 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 648 (953)
.+..++..+...+...|+.+++..++..+.+... .+...+..+...|.+.|++++|...|..+. .|+..++..++..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 3456677777778888888888888888777653 356677778888888888888888888775 4555677778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLD 727 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~ 727 (953)
+...|+.++|.+.++++.+. .| +...+..+...|...|++++|..+|+++.+.. .++...+..+..++.+.|+ +
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-H
Confidence 88888888888888888874 34 66777788888888888888888888886632 2336778888888888888 7
Q ss_pred HHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 728 DAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 728 eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|++.++++.. +.++.+|..+...+...|+++.|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 78888877643 34566778888888888888888888888888888888888888888888888888888877764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=415.82 Aligned_cols=758 Identities=11% Similarity=0.027 Sum_probs=461.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLI 105 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li 105 (953)
++..|..+...|...| ++++|+..|+++.. .+++......+.+.+...|+++.|...+.... ....+.+...+..+.
T Consensus 55 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~~ 132 (899)
T TIGR02917 55 DAEARFLLGKIYLALG-DYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKT-LLDDEGAAELLALRG 132 (899)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccc-cCCchhhHHHHHHHH
Confidence 3334444444455555 55555555554444 33333333344444444444444444443332 122222334444555
Q ss_pred HHHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChh
Q 037236 106 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVS 182 (953)
Q Consensus 106 ~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~ 182 (953)
..|.+.|++++|...|+++.+ | +...|..+...+...|++++|..+++++.+ ..+++...+..+...+...|+.+
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT--ADPGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCCHH
Confidence 556666666666666665432 2 234555666666666666666666666655 22334445555555566666666
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--C-CeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 183 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 183 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
.|...+..+.+..+ .+..++..++..+...|++++|...|+.+.+ | +...+......+...|++++|...|+++
T Consensus 211 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-- 287 (899)
T TIGR02917 211 LALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA-- 287 (899)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH--
Confidence 66666666665432 3455566666666666666666666665542 1 1112222222334455666666666555
Q ss_pred ccCCCCCC-hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcc
Q 037236 260 CEEGFIPD-VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVV 335 (953)
Q Consensus 260 ~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~ 335 (953)
.... |+ ...+..+...+...|+++.|...+..+.+.. +.+......+...+.+.|++++|...++++.. .+..
T Consensus 288 l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (899)
T TIGR02917 288 LKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364 (899)
T ss_pred HHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 2211 21 1122223334445666666666666665543 23344455555666666666666666655432 2344
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcC--------------
Q 037236 336 SWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHG-------------- 401 (953)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-------------- 401 (953)
.|+.+...+.+.|++++|.+.|+++.... +.+...+..+...+...++.+.+...+..+.+..
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 55556666666666666666666655431 1122233333334444444554444444444332
Q ss_pred -------------------CCCchhHHHHHHHHHHhcCCcccHHHHhccCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 037236 402 -------------------FDNDELVANAFVVAYAKCGSEISAENVFHGMD---SRTVSSWNALICGYAQNGDHLKALDY 459 (953)
Q Consensus 402 -------------------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 459 (953)
.+.+..++..+...|...|++++|.+.|+++. ..+...+..+...+...|++++|.+.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23344555555666666666666666665542 22344455555566666666666666
Q ss_pred HHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---C
Q 037236 460 FLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---K 536 (953)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 536 (953)
|+++...+ +.+..++..+...+...|+.+.+...+..+.+.+. .+...+..++..|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 66665542 22444555555666666666666666666655543 2344555666777777777777777776653 2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+.++|..++..+.+.... +...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44567777777777777777777777776643 223445566666677777777777777777665322 4566777777
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a 693 (953)
.+.+.|++++|..+++.+. ..+...|..+...+...|++++|++.|+++... .|+..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 7777788887777777775 345667777778888888888888888888874 56657777788888888888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
.+.++.+.+.. ..+...+..+..+|.+.|++++|.+.++++.. ++++.++..+...+...|+ +.|...+++++++
T Consensus 756 ~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88888886632 23477788888899999999999999988753 4567888999999999998 7799999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 772 EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 772 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.|+++..+..++.+|...|++++|...++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999888887643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=249.07 Aligned_cols=106 Identities=58% Similarity=0.996 Sum_probs=98.0
Q ss_pred ceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhcCcccCCCccccccchHHH--------HhhhhhhhHHHHH
Q 037236 812 GCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEK--------VNILRGHSEKLAI 883 (953)
Q Consensus 812 ~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~e~la~ 883 (953)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999988 9999999999998 445567788999999999998888766 5688999999999
Q ss_pred HHcccCCCCCCcEEEEecc-ccCCcchhhHHHHhhhcCceEEEecCCcccccc
Q 037236 884 SFGLLKTTKDLTLRVCKNL-RICVDCHNAAKLISKVAEREIVIRDNKRFHHFR 935 (953)
Q Consensus 884 ~~~~~~~~~~~~~~~~~nl-r~c~~ch~~~~~~s~~~~~~~~~~~~~~~h~~~ 935 (953)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-23 Score=260.57 Aligned_cols=666 Identities=10% Similarity=-0.004 Sum_probs=409.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 037236 31 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYS 109 (953)
Q Consensus 31 ~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~ 109 (953)
.-..++-+...+ +.+.|.+.+.++.. .|.++.++..+.+.+...|+.++|.+.++++. +.. +.++......
T Consensus 31 Ll~q~~~~~~~~-~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~-~~~-P~~~~~~~~~----- 102 (1157)
T PRK11447 31 LLEQVRLGEATH-REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLS-QLA-PDSNAYRSSR----- 102 (1157)
T ss_pred HHHHHHHHHhhC-ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hhC-CCChHHHHHH-----
Confidence 344445566666 77888888877777 55566777777777777788888887777776 332 2222221100
Q ss_pred hcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCccc-HHHHHHHhhcCCChhhHhHHH
Q 037236 110 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFT-FPCVIKACGGIADVSFGSGVH 188 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~ 188 (953)
..+ .+..|+...+-.+.+.+...|++++|+..|+.+.+ +.+|+... ...........++.++|...+
T Consensus 103 ---------~~~-~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 103 ---------TTM-LLSTPEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ---------HHH-HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 000 01122222334445567778888888888888776 33333321 111112223457788888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCCh
Q 037236 189 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDV 268 (953)
Q Consensus 189 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 268 (953)
+.+.+..+. +...+..+...+...|+.++|+..|+++...... +...+...+..+ ...+..|+.
T Consensus 171 ~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l--~~~~~~~~~ 234 (1157)
T PRK11447 171 QRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQI--KDMPVSDAS 234 (1157)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHH--hccCCChhh
Confidence 888876533 5667778888888889989998888887542111 111122222222 122222221
Q ss_pred h-hHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHH
Q 037236 269 A-TVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAF 344 (953)
Q Consensus 269 ~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~ 344 (953)
. .+...+..+-.......+...+....+....|+.. ...+...+...|++++|+..|++..+ .|...+..+...|
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 12222222222233444555555544433233321 22335566778888888888876543 3566778888888
Q ss_pred HcCCChhHHHHHHHHHHhccCCCCCchh---hHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 037236 345 SMAGDVCGTFDLLRKMQMKEEEMKPNEV---TVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGS 421 (953)
Q Consensus 345 ~~~g~~~~A~~l~~~m~~~g~~~~p~~~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 421 (953)
.+.|++++|+..|++..+.. |+.. .+..++.. ........+...+.+.|+
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~----p~~~~~~~~~~ll~~-----------------------~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALD----PHSSNRDKWESLLKV-----------------------NRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCccchhHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCC
Confidence 88888888888888877643 3211 11111100 000011122344556666
Q ss_pred cccHHHHhccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHH
Q 037236 422 EISAENVFHGMDS---RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFV 498 (953)
Q Consensus 422 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 498 (953)
+++|...|++... .+...+..+...+...|++++|++.|++..+. .|+.
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~-------------------------- 418 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGN-------------------------- 418 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC--------------------------
Confidence 6666666665432 23445555666666666666666666666553 2221
Q ss_pred HHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037236 499 IRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKS------------LVSWNTMIAGYSQNKLPVEAIVLFRRMFS 566 (953)
Q Consensus 499 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 566 (953)
...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+
T Consensus 419 --------~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 419 --------TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred --------HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122223333332 234455555555443211 12344455666777777777777777766
Q ss_pred cCCCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CHH-
Q 037236 567 IGVQPCE-ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK----DVT- 640 (953)
Q Consensus 567 ~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~- 640 (953)
. .|+. ..+..+...+.+.|+.++|...++.+.+.... +...+..+...+.+.|+.++|...++.+... +..
T Consensus 490 ~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 490 L--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 4 3443 33445555677777777777777777664332 4444555556677788999999998887632 111
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hh
Q 037236 641 --------SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LE 711 (953)
Q Consensus 641 --------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 711 (953)
.+..+...+...|+.++|+++++. ..++...+..+...+...|++++|+..|+.+.+ ..|+ ..
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~ 638 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNAD 638 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Confidence 123456678899999999999872 233566778888999999999999999999976 4566 77
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE------NYVLVS 783 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~ 783 (953)
.+..++.+|...|++++|++.++..+. .| +..++..+..++...|++++|...++++++..|+++. .+..++
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 888999999999999999999998764 33 5667888888889999999999999999998776553 566679
Q ss_pred HHHHhcCCchHHHHHHHHH-HHCCCc
Q 037236 784 NIYAGSEKWDDVRMMRQRM-KERGLQ 808 (953)
Q Consensus 784 ~~y~~~g~~~~a~~~~~~m-~~~~~~ 808 (953)
.+|...|++++|...++.. ...|+.
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 9999999999999965544 445554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-23 Score=258.14 Aligned_cols=636 Identities=9% Similarity=0.025 Sum_probs=355.9
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHH----------------HHHHHHhccCCChhHHHHHH
Q 037236 23 NASTEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEAT----------------GVLLQACGHEKDIEIGKRVH 85 (953)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~ 85 (953)
..+.++..+..++..+...| ++++|...++++.+ .|.+.... ..+.+.+...|++++|.+.+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 34556778889999999999 99999999999998 44443322 22234566778888888888
Q ss_pred HHHhhhcCCCCCchhh-hHHHHHHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCC
Q 037236 86 ELISASTQFSNDFIIN-TRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTEL 161 (953)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 161 (953)
.++. ... +++.... ..+.......|++++|++.|+++.. | +...+..+...+...|++++|+..|+++.. ..
T Consensus 136 ~~~l-~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~-~~- 211 (1157)
T PRK11447 136 DKLF-NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAK-SP- 211 (1157)
T ss_pred HHHc-cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh-CC-
Confidence 8776 332 3333211 1111122235778888888887753 3 334667777777778888888888887755 21
Q ss_pred CCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCC-hhHHHHHHHHhhccCChHHHHHHhccCCC----CCeecHHH
Q 037236 162 KPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNS 236 (953)
Q Consensus 162 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~ 236 (953)
+. +...+..++..+...+..++ ...+...+..+-....++.|...++.+.. |+.. ...
T Consensus 212 -~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 212 -AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred -Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 11 00111111121111111111 11222223333332334444444443221 1111 112
Q ss_pred HHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCC-chHHHHHHHhhHh
Q 037236 237 IICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRE-LMVNNALVDMYAK 315 (953)
Q Consensus 237 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 315 (953)
....+...|++++|+..|++. ... -+.+...+..+..++.+.|++++|...+...++...... ...+..++..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~a--L~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~--- 348 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQA--VRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV--- 348 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHH--HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh---
Confidence 234455666666777666666 221 122445555555666666666666666666655432111 1111111100
Q ss_pred cCChhHHHHHHhcCCCCCcccH--HHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHH
Q 037236 316 CGFLSEAQILFDKNNNKNVVSW--NTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKEL 393 (953)
Q Consensus 316 ~g~~~~A~~~f~~~~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i 393 (953)
...| ......+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.
T Consensus 349 ------------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 349 ------------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVD---NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred ------------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000 011223344445555555555444421 11122222233333333344444444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHH
Q 037236 394 HGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRT------------VSSWNALICGYAQNGDHLKALDYFL 461 (953)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 461 (953)
+..+++.. +.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|+
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333321 112223333334442 234455555554443211 1123344455555666666666666
Q ss_pred HhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-Cc
Q 037236 462 QMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SL 538 (953)
Q Consensus 462 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~ 538 (953)
+.++. .|+ +..++..+...|.+.|++++|...|+++.+ | +.
T Consensus 486 ~Al~~--~P~----------------------------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 486 QRLAL--DPG----------------------------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHh--CCC----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 55543 222 233444556667777777777777776543 2 33
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..+..+...+.+.++.++|+..++.+......++...+.. .+ .......+.+.+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l-------~~~~~l~~a~~l 583 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL-------QSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH-------hhhHHHHHHHHH
Confidence 3444444455667777777777776543221111110000 00 001223456778
Q ss_pred HhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037236 619 AKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYF 697 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~ 697 (953)
...|+.++|..+++. .+.+...+..+...+...|++++|++.|++.++ ..| +...+..++..+...|++++|++.+
T Consensus 584 ~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 889999999999984 344666778888999999999999999999999 467 6778899999999999999999999
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-------ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 698 SQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-------DAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 698 ~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+...+ ..|+ ...+..+..++.+.|++++|.++++++.. .| +..++..+...+...|+.++|...++++
T Consensus 661 ~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 661 AKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98754 4555 56677788899999999999999998753 11 2246666778889999999999999999
Q ss_pred hc---cCCCCcc
Q 037236 769 LE---LEPDKAE 777 (953)
Q Consensus 769 ~~---l~p~~~~ 777 (953)
+. +.|..+.
T Consensus 738 l~~~~~~~~~p~ 749 (1157)
T PRK11447 738 MVASGITPTRPQ 749 (1157)
T ss_pred HhhcCCCCCCCC
Confidence 85 4444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-22 Score=239.21 Aligned_cols=662 Identities=10% Similarity=0.001 Sum_probs=413.8
Q ss_pred cHHHHHHH--HHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 30 HFLQEITT--LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 30 ~~~~~i~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
++..+..+ +...| ++++|+..|+++.+ .|.+..++..|.+.+...|+.++|....++.+ +.. +.|...+..|
T Consensus 44 ~~~~f~~a~~~~~~G-d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv-~ld-P~n~~~~~~L-- 118 (987)
T PRK09782 44 IYPRLDKALKAQKNN-DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQL-KRH-PGDARLERSL-- 118 (987)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-cccHHHHHHH--
Confidence 34444444 33348 99999999999999 77778889999999999999999999999998 442 4555555544
Q ss_pred HHHhcCChhhHHHHhhcCCC--CC-chhHHHHHHH--------HhcCCChhhHHHHHHHhHhcCCCCCCcccHHHH-HHH
Q 037236 107 MYSLCGFPLDSRRVFDSLKT--RN-LFQWNALVSG--------FTKNELYPDVLSIFVELLSDTELKPDNFTFPCV-IKA 174 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-l~~ 174 (953)
+..++.++|..+++++.. |+ ...+..+... |.+. ++|...++ ... ....|+..+.... .+.
T Consensus 119 --a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 119 --AAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQR 191 (987)
T ss_pred --HHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHH
Confidence 222999999999999853 32 3344444443 6665 44554444 322 3344445555555 889
Q ss_pred hhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhc-cCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHH
Q 037236 175 CGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK-CAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDL 253 (953)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 253 (953)
+...++++.+...+..+.+.+.. +..-...|-.+|.. .++ +.|..+++...+.|...+..+...|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998754 35556667778887 367 8888888765556788899999999999999999999
Q ss_pred HHHhhhccCC-CCCChhhHHHHHHhhhcCCCchH-HHHHHHHHHHhCCCCC-chHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 254 LIKMMGCEEG-FIPDVATVVTVLPVCAGEGNVDL-GILVHGLAVKLGLTRE-LMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 254 ~~~m~~~~~g-~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
++++ ...- -.|...++-.++. +.+.... +..-+. + .+.++ ....-.++..+.+.++++.|+++.+ ..
T Consensus 270 L~~~--~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (987)
T PRK09782 270 LIEN--KPLFTTDAQEKSWLYLLS---KYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TL 339 (987)
T ss_pred HHhC--cccccCCCccHHHHHHHH---hccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CC
Confidence 9999 4433 3366666655543 3333321 111010 0 01111 1223345788899999998887754 33
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHc-C-CCCchhH
Q 037236 331 NKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRH-G-FDNDELV 408 (953)
Q Consensus 331 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~ 408 (953)
..+.. .-.-..+....+...++...++.|.+.. +-+.....-+--...+.|+.++|.+++...... + -..+...
T Consensus 340 ~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~---~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 340 PANEM-LEERYAVSVATRNKAEALRLARLLYQQE---PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred CcchH-HHHHHhhccccCchhHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 22331 1111122234466777777777776542 112222222222233455566666666555442 1 1123334
Q ss_pred HHHHHHHHHhcCCcccHHHHhcc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccc
Q 037236 409 ANAFVVAYAKCGSEISAENVFHG---MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHL 485 (953)
Q Consensus 409 ~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 485 (953)
.+-|+..|.+.+.+....++..- +..+.. +.-.|+..++...+.....
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-------------------- 466 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQ---------RQWQSQLPGIADNCPAIVR-------------------- 466 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchh---------HHHHhhhhhhhhhHHHHHH--------------------
Confidence 44555555555553333332221 111111 0011111111111111111
Q ss_pred cccchhhHHHHHHHHhCCCC--chhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHH--HhcCChhHHHHHH
Q 037236 486 KSLHRGKEIHGFVIRNGLEG--DSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGY--SQNKLPVEAIVLF 561 (953)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~ 561 (953)
+.... .+ +...+..+..++.. ++.++|...|.+.....+..|+.+..++ .+.|++++|+..|
T Consensus 467 ------------al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 467 ------------LLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred ------------hcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 11 23344444444444 5555666655554432223344433333 4566666666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH--
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDV-- 639 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-- 639 (953)
+++... .| +...+..+...+.+.|+.++|...|++....++
T Consensus 533 rka~~~--~p-----------------------------------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~ 575 (987)
T PRK09782 533 QKISLH--DM-----------------------------------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD 575 (987)
T ss_pred HHHhcc--CC-----------------------------------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc
Confidence 665432 22 222234445566677777777777776653222
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 640 -TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 640 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
..+..+...+...|++++|+..|++.++ ..|+...+..+..++.+.|++++|...+++..+ +.|+ ...+..+.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG 650 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 2222233334455899999999999888 577877888888889999999999999988876 5676 67778888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
..+...|++++|++.+++... .| ++.+|..+..++...|+++.|+..++++++++|++..+....+++.....+++.|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 888899999999998887654 34 5778899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 037236 796 RMMRQRMKE 804 (953)
Q Consensus 796 ~~~~~~m~~ 804 (953)
.+-++..-.
T Consensus 731 ~~~~~r~~~ 739 (987)
T PRK09782 731 HEEVGRRWT 739 (987)
T ss_pred HHHHHHHhh
Confidence 886654433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-21 Score=230.91 Aligned_cols=618 Identities=9% Similarity=-0.022 Sum_probs=368.6
Q ss_pred hcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhH
Q 037236 110 LCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 186 (953)
..|++++|...|+...+ | +...+..|.+.|...|++++|+..+++..+ ..|+...|..++... ++.+.|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---RHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHHHHh---ccChhHHH
Confidence 34777777777776542 3 344667777777778888888877777766 344444444444222 66666667
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH--------hhccCChHHHHHHhccCCCCC--eecHHHH-HHHHHcCCCchHHHHHHH
Q 037236 187 VHGMAAKMGLIGDVFVSNALIAM--------YGKCAFVEEMVKLFEVMPERN--LVSWNSI-ICGSSENGFSCESFDLLI 255 (953)
Q Consensus 187 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~l-i~~~~~~g~~~~A~~l~~ 255 (953)
+++++.+..+. +..++..+... |.+.+....|++ .+...|+ ..+.... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 77777665433 23333333333 544444444443 1111222 2222222 455555555555555555
Q ss_pred HhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHh-cCChhHHHHHHhcCCCCCc
Q 037236 256 KMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAK-CGFLSEAQILFDKNNNKNV 334 (953)
Q Consensus 256 ~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~d~ 334 (953)
++ .+.+ +.+......|-.+|.. .++ +.+..+++...+.|+
T Consensus 207 ~L-------------------------------------~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~ 247 (987)
T PRK09782 207 EA-------------------------------------RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDP 247 (987)
T ss_pred HH-------------------------------------HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCH
Confidence 55 4433 1122223334444444 244 555555544333455
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCc-hhHHHHHH
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDND-ELVANAFV 413 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li 413 (953)
..+..+...|.+.|+.++|.+.++++...-. -.|+..++...+.-....... +..-+. + .+.++ ....-.++
T Consensus 248 ~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~-~~~~~~~~~~~l~r~~~~~~~--~~~~~~---~-~~~~~~~~~~~~~~ 320 (987)
T PRK09782 248 QSRITYATALAYRGEKARLQHYLIENKPLFT-TDAQEKSWLYLLSKYSANPVQ--ALANYT---V-QFADNRQYVVGATL 320 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCccccc-CCCccHHHHHHHHhccCchhh--hccchh---h-hhHHHHHHHHHHHH
Confidence 5666666666666666666666666544321 124444444443322222100 000000 0 01111 11233446
Q ss_pred HHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhH
Q 037236 414 VAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKE 493 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 493 (953)
..+.+.++++.+.++.. ....+.. .-.-..+....+...++.+.++.|.... +-+....--+--.....|+.++|..
T Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 321 PVLLKEGQYDAAQKLLA-TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHHHhccHHHHHHHHhc-CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHH
Confidence 77778888887777644 2222221 1111122233466667777777776541 1122222222222345677777887
Q ss_pred HHHHHHHh-C-CCCchhhHhhHHHHHHhcCChhHHHHHHHh---cccCCcccHHHHHHHHHhcCChhH---HHHHHHHHH
Q 037236 494 IHGFVIRN-G-LEGDSFTGISLLSLYMHCEKSSSARVLFDE---MEDKSLVSWNTMIAGYSQNKLPVE---AIVLFRRMF 565 (953)
Q Consensus 494 i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~ 565 (953)
++...... + -..+....+-|+..|.+.+......++..- +..+....| .|+..+ +...+....
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW---------QSQLPGIADNCPAIVRLL 468 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH---------HhhhhhhhhhHHHHHHhc
Confidence 77777652 1 122445566778888888774444433322 322222111 223322 233333333
Q ss_pred HcCCCCC---hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHH
Q 037236 566 SIGVQPC---EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVT 640 (953)
Q Consensus 566 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~ 640 (953)
. ..|+ ...+..+-.++.. +..++|...+....... |+......+...+...|++++|...|+++. .++..
T Consensus 469 ~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~ 543 (987)
T PRK09782 469 G--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE 543 (987)
T ss_pred c--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH
Confidence 2 2233 3334444434433 67777887666665543 343333344555578999999999999876 35556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
.+..+...+...|+.++|...|++.++. .|+. ..+..+.......|++++|...+++..+ +.|+...|..+..+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~ 618 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 6778888899999999999999999985 4644 3344445556677999999999999976 67888899999999
Q ss_pred HhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+.+.|++++|++.+++... .| ++..+..+..++...|+.++|...++++++++|+++..+..++.+|...|++++|..
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998764 44 577888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 037236 798 MRQRMKE 804 (953)
Q Consensus 798 ~~~~m~~ 804 (953)
.+++.-+
T Consensus 699 ~l~~Al~ 705 (987)
T PRK09782 699 YARLVID 705 (987)
T ss_pred HHHHHHh
Confidence 8777654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=195.95 Aligned_cols=443 Identities=14% Similarity=0.160 Sum_probs=298.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhH
Q 037236 235 NSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYA 314 (953)
Q Consensus 235 ~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 314 (953)
..+..-..+.|++.+|++.-.... .+ -+.+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~--~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVG--QE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhh--cc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344455567788888877655441 11 11122222222222333334433332222222221 233456777888888
Q ss_pred hcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHH
Q 037236 315 KCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 315 ~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~ 391 (953)
..|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s--------------- 188 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARS--------------- 188 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhc---------------
Confidence 88888888888887654 3466788888888888888888888877765 4455332221
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS--R-TVSSWNALICGYAQNGDHLKALDYFLQMTHSDL 468 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 468 (953)
.+.......|++++|...+.+..+ + =.+.|+.|...+-.+|+...|+..|++.+..
T Consensus 189 -------------------~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 189 -------------------DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred -------------------chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 122222334455555444443322 2 2356777777777777777777777776542
Q ss_pred CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHH
Q 037236 469 EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMI 545 (953)
Q Consensus 469 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li 545 (953)
.|+- ...|-.|...|...+.++.|...+.+... | ..+.+..|.
T Consensus 248 dP~f----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 248 DPNF----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred CCcc----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceE
Confidence 2321 11233344444445555555555544321 1 234444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 037236 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
..|..+|..+-|+..+++.++. .|+ -...|+.|..++-..|++.
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~--~P~----------------------------------F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALEL--QPN----------------------------------FPDAYNNLANALKDKGSVT 337 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhc--CCC----------------------------------chHHHhHHHHHHHhccchH
Confidence 5555556666666666555543 332 3456777788888888888
Q ss_pred HHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 626 QSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 626 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
+|...|.+.. ..-..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.+
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888776 33456788899999999999999999999998 7885 5679999999999999999999999887
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+ |+|+ .+.|+.|...|-..|+.++|.+.+.+... .|. +...+.|...++..|++++|+..++.+++++|+.+.+
T Consensus 416 r---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 416 R---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred h---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 5 9999 88999999999999999999999987753 554 5688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHH
Q 037236 779 YVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~ 796 (953)
|-.|.....--..|.+-.
T Consensus 493 ~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhHHHHHHHHHhcccchH
Confidence 999998888888888743
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-19 Score=186.12 Aligned_cols=354 Identities=14% Similarity=0.140 Sum_probs=277.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchh-hHhhHHH
Q 037236 438 SSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSF-TGISLLS 515 (953)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~ 515 (953)
.+|..+...+-..|+.++|+.+|+.|++. +| ....|..+..++...|+.+.|.+.+.+.++.++ +.+ ..+-+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP--~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP--DLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc--chhhhhcchhH
Confidence 45666666677777777777777777664 33 344566666666667777777777666665432 222 2233444
Q ss_pred HHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchHH
Q 037236 516 LYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE-ISIVSILSACSQLSALRL 591 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 591 (953)
.....|++++|...+.+..+ | -.+.|+.|...+...|+...|++.|++.... .|+- -.|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 55567888888888877654 3 3468999999999999999999999988764 5542 345556666666666777
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 592 GKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
|...+..+...... ...++..|...|-..|.++-|+..|++.. +| -...|+.|..++-..|+..+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 76666655543322 45667778889999999999999999887 33 467999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-hhH
Q 037236 669 GHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP-EEAD-AGI 744 (953)
Q Consensus 669 g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~-~~~~-~~~ 744 (953)
+.|+ ....+.|..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++.. +.|+ +..
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 6775 46789999999999999999999998865 7788 7788999999999999999999998775 4676 458
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
++.++..|...|++..|...+.+++.++|.-+.++..|+.+|..+|+..+|+.-++...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999655443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-16 Score=174.79 Aligned_cols=580 Identities=13% Similarity=0.082 Sum_probs=388.7
Q ss_pred hHHHHHHhccCCCCCeecHHHH-HHH--HHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHH
Q 037236 216 VEEMVKLFEVMPERNLVSWNSI-ICG--SSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHG 292 (953)
Q Consensus 216 ~~~A~~~f~~m~~~~~~~~~~l-i~~--~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 292 (953)
++.|...|..+.+.+..-.-.| ..+ ....|++..|+.+|..........+||... .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 5777777777654222211122 222 234678888888888853345666666542 22345567788888888888
Q ss_pred HHHHhCCCCCchHHHHHHHhhHhc---CChhHHHHHHhcC---CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCC
Q 037236 293 LAVKLGLTRELMVNNALVDMYAKC---GFLSEAQILFDKN---NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366 (953)
Q Consensus 293 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 366 (953)
.+++... .++..+-.|.-.-... ..+..+..++.+. ...|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8776542 2222222221111122 2234444444432 2357788888888888888888888888887654211
Q ss_pred CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHH
Q 037236 367 MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNAL 443 (953)
Q Consensus 367 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l 443 (953)
-..-...|-.+-+++=..|+++.|...+-...+..-...+..+-.|..+|.+.|+++.|...|+.+... +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 112234577777788888888888888877776543333344556778999999999999999887532 44566666
Q ss_pred HHHHHhcC----ChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHH----HHHhCCCCchhhHhhHHH
Q 037236 444 ICGYAQNG----DHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGF----VIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 444 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~ 515 (953)
...|...+ ..+.|..++.+..+.- +.|...|..+-..+... +......++.. +...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666665 4455666665555432 33455555555444333 33333444443 345566678889999999
Q ss_pred HHHhcCChhHHHHHHHhcccC-------Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDK-------SLV------SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
.+...|++++|...|++.... |.. +-..+...+-..++.+.|.+.+..+.+. .|+.+.--.=+.+
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999876532 221 1222445566677899999999999876 5655433222222
Q ss_pred hc-cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHh-----
Q 037236 583 CS-QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGI----- 651 (953)
Q Consensus 583 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~----- 651 (953)
.+ ..+.+.++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 22 2345667777776666543 3367777778888988888888888666554 3466666666664432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 652 -------HGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 652 -------~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
.+..++|+++|.+.+. ..| |...-+.+.-.+++.|++.+|..+|.+..+... ....+|-.+..+|..+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHH
Confidence 2457889999999988 577 888888999999999999999999999976433 3356788899999999
Q ss_pred CCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-------------
Q 037236 724 GKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY------------- 786 (953)
Q Consensus 724 g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y------------- 786 (953)
|++-.|+++|+.... +.++.+.+.|..++...|.+.++...+..++.+.|.|+...+.++-+.
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 999999999986642 467889999999999999999999999999999999998877666643
Q ss_pred ------HhcCCchHHHHHHHHHHHCCC
Q 037236 787 ------AGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 787 ------~~~g~~~~a~~~~~~m~~~~~ 807 (953)
..-+..++|.+++..|...+-
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556777777777776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-16 Score=186.39 Aligned_cols=247 Identities=15% Similarity=0.117 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHHHcC-CCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 037236 552 KLPVEAIVLFRRMFSIG-VQPCE-ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRR 629 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 629 (953)
+++++|++.|++..+.+ ..|+. ..+..+-..+...|++++|...+..+++.... ....+..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666666666665543 22322 23333344445566666666666666554321 34567778888889999999999
Q ss_pred HhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 037236 630 VFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA 705 (953)
Q Consensus 630 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 705 (953)
.|++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|+..|++.++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 998765 45678899999999999999999999999998 567 566778888899999999999999999876
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhH-------HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGI-------WSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..|+ ...|..+..+|...|++++|++.+++... .|+ ..+ ++..+..+...|++++|...++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3455 67888899999999999999999987643 332 111 1222222344699999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|.+.++...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999998877654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-14 Score=161.19 Aligned_cols=559 Identities=13% Similarity=0.030 Sum_probs=280.7
Q ss_pred hhhHHHHhhcCCCCCch-hHHHHHHH--HhcCCChhhHHHHHHHhHhc-CCCCCCcccHHHHHHHhhcCCChhhHhHHHH
Q 037236 114 PLDSRRVFDSLKTRNLF-QWNALVSG--FTKNELYPDVLSIFVELLSD-TELKPDNFTFPCVIKACGGIADVSFGSGVHG 189 (953)
Q Consensus 114 ~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~a~~~~~~m~~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 189 (953)
++.|.+.|..+.+.++. ....+..+ ....|++-.|+.+|...... ...+||.. -.+-..+.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 46777777665432211 11122222 23456777777777775541 12222221 122234456677777777777
Q ss_pred HHHHhCCCCChhHHHHHHHHh---hccC---ChHHHHHHhccCC---CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhc
Q 037236 190 MAAKMGLIGDVFVSNALIAMY---GKCA---FVEEMVKLFEVMP---ERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260 (953)
Q Consensus 190 ~~~~~g~~~~~~~~~~li~~~---~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 260 (953)
.+.+..+ ...++++... .... .+..+..++...- ..|++..|.|-+-|.-.|++..++.+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 7766432 2222222211 1112 2333333333322 245666677777777777777777777776211
Q ss_pred cCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCC---CcccH
Q 037236 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK---NVVSW 337 (953)
Q Consensus 261 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---d~~~~ 337 (953)
...-..-...|-.+.+++-..|+++.|...|....+..-..-+.-+-.|..+|.+.|+++.|...|+++.+. +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 111111223455666667777777777777766665532221223345667777777777777777765432 23344
Q ss_pred HHHHHHHHcCC----ChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 037236 338 NTIIGAFSMAG----DVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFV 413 (953)
Q Consensus 338 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 413 (953)
..+...|...+ ..+.|..++.+..+. .+.|...|..+-..+... +.......+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~-d~~~sL~~~~------------------ 437 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQT-DPWASLDAYG------------------ 437 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhc-ChHHHHHHHH------------------
Confidence 44444444443 334555555554442 122333333333322222 1111122111
Q ss_pred HHHHhcCCcccHHHHhcc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCcc------hHHHHHHhhc
Q 037236 414 VAYAKCGSEISAENVFHG-MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS---DLEPDLF------SIGSLILACT 483 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~~~~ 483 (953)
.|..++.. +....+...|.+..-+...|.+++|...|...... -..+|.. +--.+....-
T Consensus 438 ----------~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 438 ----------NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ----------HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 12211111 11234445555555666666666666666655443 1122221 1112333334
Q ss_pred cccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHH
Q 037236 484 HLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVL 560 (953)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 560 (953)
..++.+.|.+++..+++..+. -+..|--|..+-...+...+|...+....+ .|+..|+-+...|.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 455666677777766654321 111111222122223456677777776543 4666777777777777777777776
Q ss_pred HHHHHHcC-CCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 037236 561 FRRMFSIG-VQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---D 636 (953)
Q Consensus 561 ~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 636 (953)
|....+.- ..+|..+..++-+.|-.. +... ..+. -...+..++|.++|.++. +
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~--~rn~---------ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQA------------LHNP--SRNP---------EKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHH------------hccc--ccCh---------HHHHHHHHHHHHHHHHHHhcCc
Confidence 66655431 234554444444432110 0000 0000 112344556666666554 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV 716 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 716 (953)
+|...-|.+.-.++..|++.+|..+|.+.++.. .-+..+|..+...|...|++-.|++.|+...+++.-.-+.....+|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 455555666666666666667777766666642 2234456666666666666777776666666665544456666666
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 037236 717 VDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~ 735 (953)
..++.++|.+.+|.+....
T Consensus 723 ara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6666666666666665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=182.80 Aligned_cols=291 Identities=12% Similarity=0.088 Sum_probs=210.3
Q ss_pred HHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHhccccchH
Q 037236 517 YMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPC---EISIVSILSACSQLSALR 590 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 590 (953)
+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ...+..+...+...|+.+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666665532 223455566666666666666666666655322111 123444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC------HHHHHHHHHHHHhcCChHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KD------VTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
.|..++..+.+.. +.+...+..++.+|.+.|++++|.+.|+.+.. |+ ...|..++..+...|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665542 23556777888888888888888888888752 11 124566777888999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
+++.+. .| +..++..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999884 56 4567778888999999999999999998752 444 45678889999999999999999988754
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHHHCCCccCCce
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG--SEKWDDVRMMRQRMKERGLQKEAGC 813 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~~~~~~ 813 (953)
.|+...+..++..+...|+++.|...++++++..|++......+...+.. .|+.+++..+++.|.++++++.|++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 57777778888899999999999999999999999887544444433322 5699999999999999999988874
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-15 Score=177.62 Aligned_cols=248 Identities=9% Similarity=-0.026 Sum_probs=181.2
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
..++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+..|++..+. .|+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------ 397 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------ 397 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC------------
Confidence 3445555666677777777777776653 2 2345666677777777777777777777654 333
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..
T Consensus 398 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 398 ----------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45667778888888999999999998876 34567788888899999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHH
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-E-------HYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~lv~~l~~~g~~~eA~~~ 732 (953)
|++.+. ..| +...+..+..++...|++++|+..|+...+ +.|+. . .++.....+...|++++|.++
T Consensus 456 ~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 456 FRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999988 467 567888889999999999999999999866 44431 1 112222334457999999999
Q ss_pred HHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 733 IIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 733 ~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++... .| +...+..++..+...|++++|...+++++++.+.....+ ....|.+|.++....++
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 988643 44 456788999999999999999999999999987654422 22345566676655554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=178.62 Aligned_cols=292 Identities=17% Similarity=0.150 Sum_probs=207.2
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCC
Q 037236 446 GYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEK 522 (953)
Q Consensus 446 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~ 522 (953)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666542 12233445555555555555555555555554322111 2356677778888888
Q ss_pred hhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHH
Q 037236 523 SSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYA 599 (953)
Q Consensus 523 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 599 (953)
+++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 8888888888765 3456778888888888888888888888876542221100
Q ss_pred HHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--H
Q 037236 600 LKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--T 674 (953)
Q Consensus 600 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~ 674 (953)
....+..++..|.+.|++++|...|+++. +.+...+..++..|...|++++|+++|+++.+. .|+ .
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHH
Confidence 01234557778888999999999999876 334667888889999999999999999999984 453 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCR 753 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~ 753 (953)
.++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|.++++++.. .|+...+..++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 5678889999999999999999999876 457766778889999999999999999987654 688888888887765
Q ss_pred h---cCChhHHHHHHHHHh----ccCCC
Q 037236 754 T---YGALKMGEKVAKTLL----ELEPD 774 (953)
Q Consensus 754 ~---~g~~~~a~~~~~~~~----~l~p~ 774 (953)
. +|+.+.+...+++++ +.+|+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 456667666666555 45565
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-16 Score=180.49 Aligned_cols=329 Identities=10% Similarity=0.016 Sum_probs=258.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|.+.++.+.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456777888888888888888888764333 333444445556688888888888888877644 4556777888899
Q ss_pred hcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHH
Q 037236 519 HCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKET 595 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 595 (953)
+.|++++|...|++... | +...|..+...+.+.|++++|...++.+.... |+.......+..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764 3 45678888999999999999999999887653 3333332223446778999999999
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 037236 596 HCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKE----AIELFEKMLAL 668 (953)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~ 668 (953)
+..+.+....++......+...+.+.|+.++|...|++.. +.+...+..+...|...|++++ |+..|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 8888776544444555666788899999999999999876 4467788899999999999985 8999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHH
Q 037236 669 GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIW 745 (953)
Q Consensus 669 g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~ 745 (953)
..| +...+..+...+...|++++|...+++..+ +.|+ ...+..+..+|.+.|++++|++.++++.. .|+...+
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 577 566788999999999999999999999976 4566 56677789999999999999999988764 5665444
Q ss_pred H-HHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 746 S-SLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 746 ~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
. .+..++...|+.+.|...++++++.+|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3 456678899999999999999999999865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-15 Score=181.05 Aligned_cols=362 Identities=11% Similarity=0.022 Sum_probs=223.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHhccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc
Q 037236 408 VANAFVVAYAKCGSEISAENVFHGM---DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484 (953)
Q Consensus 408 ~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 484 (953)
.+..+...+.+.|++++|..+|++. ...+...+..++..+...|++++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445555555555555555555552 2223444555556666666666666666666554 2222214444444555
Q ss_pred ccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc--------cHHHHHHHHHhcCChhH
Q 037236 485 LKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV--------SWNTMIAGYSQNKLPVE 556 (953)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~~~g~~~~ 556 (953)
.|+.+.|...+..+.+..+. +......+..++.+.|..++|.+.++.... ++. ....++..+...+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---- 202 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---- 202 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc----
Confidence 55555555555555554433 233333455556666666666666665553 111 0001111110000
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccch---HHHHHHHHHHHHc-CCCCCcc--HHHH---HHHHHHhcCCHHHH
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSAL---RLGKETHCYALKA-ILTNDAF--VACS---IIDMYAKCGCLEQS 627 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~A 627 (953)
....+.+ +.|.+.++.+.+. ...|+.. .... .+.++...|++++|
T Consensus 203 --------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 203 --------------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred --------------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 0111111 3333333333322 1111111 1111 12233466899999
Q ss_pred HHHhhhcCCCC---HH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 628 RRVFDRLKDKD---VT-SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-----TFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 628 ~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
...|+.+...+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|..+++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999887321 11 1122466789999999999999998874 342 2446667778899999999999999
Q ss_pred HHHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 699 QMQKLHA----------VKPK---LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 699 ~m~~~~~----------~~p~---~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
.+.+..+ -.|+ ...+..+..++...|++++|++.++++.. +.+...|..+...+...|+.+.|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8866321 1123 23456678889999999999999998754 4467899999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
.++++++++|+++..+..++..+...|+|++|..+.+.+.++
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-15 Score=174.69 Aligned_cols=324 Identities=10% Similarity=-0.007 Sum_probs=266.1
Q ss_pred cchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHH
Q 037236 472 LFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGY 548 (953)
Q Consensus 472 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 548 (953)
......++..+.+.|+.+.|..++...+.....+....+. ++......|++++|...|+++.. | +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345567778889999999999999999887776544444 44566679999999999999875 3 456788889999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 549 SQNKLPVEAIVLFRRMFSIGVQPC-EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 549 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
.+.|++++|+..|++..+. .|+ ...+..+..++...|+.++|...+..+......+. ..+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 455 45666777889999999999999988877654433 333333 347889999999
Q ss_pred HHHhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 037236 628 RRVFDRLKDK----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN----GLKYFS 698 (953)
Q Consensus 628 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~----a~~~~~ 698 (953)
...++.+.+. +...+..+...+...|++++|+..|+++.+. .| +...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987632 3344555677889999999999999999984 56 56778889999999999986 899999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 699 QMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 699 ~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
++.+ +.|+ ...+..+..+|.+.|++++|+..+++... .| ++.++..+..++...|+++.|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8876 5676 77889999999999999999999988754 34 56788888999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+..+..++.+|...|++++|...++...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888899999999999999988776554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=163.34 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=140.5
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHH
Q 037236 126 TRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNA 205 (953)
Q Consensus 126 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 205 (953)
.||.+||..+|.-|+..|+.+.|- +|..|.- ...+.+...|+.++.+....++.+.++ +|.+.+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 345555666666666666665555 5555555 455555556666666655555555554 455666666
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCch
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVD 285 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 285 (953)
|...|...||+.. |+...+ ..-.++..+..+|....-..++..+. ...+.-||..+...++ ...|-++
T Consensus 89 Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illl---v~eglwa 156 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLL---VLEGLWA 156 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHH---HHHHHHH
Confidence 6666666666544 221111 12223344555555555555555542 3445555554432221 1122222
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhHh-cCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHHHHHhc
Q 037236 286 LGILVHGLAVKLGLTRELMVNNALVDMYAK-CGFLSEAQILFDKNNN-KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMK 363 (953)
Q Consensus 286 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 363 (953)
.+.+++..+...... .++.. .++-... ...+++-..+.....+ ++..++.+.+..-..+|+.+.|..++.+|.+.
T Consensus 157 qllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 222222222111100 00000 1111111 1122333333333333 67777777777777788888888888888887
Q ss_pred cCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 037236 364 EEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGS 421 (953)
Q Consensus 364 g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 421 (953)
| ++.+.+-|..+|-+ .++......+..-|...|+.|+..|+...+-.+.++|.
T Consensus 234 g--fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 G--FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred C--CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7 77777777777655 66677777777777778888887777777666666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-14 Score=164.66 Aligned_cols=433 Identities=11% Similarity=0.062 Sum_probs=263.2
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHH---HHHHHcCCChhHHHH
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTI---IGAFSMAGDVCGTFD 355 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~ 355 (953)
.+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555555554321112233 677777777888888888887776644444333 345667788888888
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC
Q 037236 356 LLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR 435 (953)
Q Consensus 356 l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 435 (953)
+|+++.+. .|+ ++.++..++..|...++.++|.+.++++...
T Consensus 124 ly~kaL~~----dP~----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 124 LWQSSLKK----DPT----------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHhh----CCC----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 88888764 333 3344445566666667777777777776554
Q ss_pred ChhhHHHHHHHHHh--cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhH
Q 037236 436 TVSSWNALICGYAQ--NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISL 513 (953)
Q Consensus 436 ~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 513 (953)
+......+..+|.. .++..+|++.++++.+. .|+. ...+..+
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n----------------------------------~e~~~~~ 209 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTS----------------------------------EEVLKNH 209 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHH
Confidence 43322223334443 44555577777777765 2332 2222333
Q ss_pred HHHHHhcCChhHHHHHHHhcccC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
+....+.|-...|.++..+-+.- +...+.-+ . .+.|.+ +.+.+..|+..- -.+..-.+.+
T Consensus 210 ~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~a~~~~~~~-------~~r~~~~d~a 270 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRMAVLPTRSE-------TERFDIADKA 270 (822)
T ss_pred HHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhhcccccccc-------hhhHHHHHHH
Confidence 33444444444555444433310 00000000 0 000110 111111110000 0000011222
Q ss_pred HHHHHHHHHc-CCCCCc-cH-HHH---HHHHHHhcCCHHHHHHHhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 593 KETHCYALKA-ILTNDA-FV-ACS---IIDMYAKCGCLEQSRRVFDRLKDK----DVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 593 ~~~~~~~~~~-~~~~~~-~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
..-.+.+... +-.|.. .. ..+ .+-++.+.|++.++.+.|+.+..+ -..+-.++..+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2222222221 111111 11 122 234566788899999999988832 2235566888899999999999999
Q ss_pred HHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------------CCCC-hhHHHHHHHHHhhcC
Q 037236 663 EKMLALGH----KP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA------------VKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 663 ~~m~~~g~----~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~lv~~l~~~g 724 (953)
+++..... .| +......|..++..++++++|..+++.+.+... -.|| ...+..++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99876421 12 333356788899999999999999999965222 1223 445566788889999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
++.+|++.++++.. +-|..++..+...++..|++..|+..++.+..++|++...+..++..+.+.|+|.+|.++.+.+
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998864 4578899999999999999999999999999999999999999999999999999999988777
Q ss_pred HHC
Q 037236 803 KER 805 (953)
Q Consensus 803 ~~~ 805 (953)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-14 Score=172.60 Aligned_cols=163 Identities=8% Similarity=-0.026 Sum_probs=123.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH-
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKD-------VTSWNAIIGGHGIHGYGKEAIELFEKMLALG-----------HKPDT- 674 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~P~~- 674 (953)
+...|...|++++|...|+++...+ ...+..+..++...|++++|+++++++.+.. -.|+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3556777777777777777764211 2345556667788888888888888887742 12332
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHH
Q 037236 675 --FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLL 749 (953)
Q Consensus 675 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll 749 (953)
..+..+...+...|+.++|+..++++.. ..|+ ...+..+..++.+.|+.++|++.+++... .|+ ...+..++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2455677788899999999999999876 3455 67888899999999999999999988764 454 66777777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
..+...|+++.|+..++++++.+|+++.+.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 788889999999999999999999998643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=152.19 Aligned_cols=686 Identities=10% Similarity=0.002 Sum_probs=371.0
Q ss_pred CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHH
Q 037236 58 NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS 137 (953)
Q Consensus 58 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 137 (953)
+.|+..||.++|..|+..|+.+.|- ++..|. ...++....+++.++....+.++.+.|. +|-..+|+.|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 5677788888888888888877777 777776 6667777777888887777777766664 566678888888
Q ss_pred HHhcCCChhh---HHHHHHHhHh---cCCCCCCcccHHHHHHHhhcCC-Chhh------HhHHHHHHHHhCC-CCChhHH
Q 037236 138 GFTKNELYPD---VLSIFVELLS---DTELKPDNFTFPCVIKACGGIA-DVSF------GSGVHGMAAKMGL-IGDVFVS 203 (953)
Q Consensus 138 ~~~~~g~~~~---a~~~~~~m~~---~~g~~p~~~~~~~ll~~~~~~~-~~~~------a~~~~~~~~~~g~-~~~~~~~ 203 (953)
+|.++|+... ..+.+..... ..|+.....-|...+++|...- +... -+.++...++.+. .|...-+
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 8888887643 2221111111 0222222222222222221110 1000 1112222222221 1111111
Q ss_pred HHH---HHHhh-ccCChHHHHHHhccCCC-CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhh
Q 037236 204 NAL---IAMYG-KCAFVEEMVKLFEVMPE-RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 204 ~~l---i~~~~-~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
+.. +.-.. ....+++-........+ ++..++.+++.+-.-+|+.+-|..++..| ++.|.+.+.+-|-.+|-+
T Consensus 172 ~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 172 APFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred chHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCCCcccccchhhhhc-
Confidence 100 11111 11223333333333333 78889999999999999999999999999 899999998888777755
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCC-----C----
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG-----D---- 349 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-----~---- 349 (953)
.++......++.-|...|+.|+..|+...+-.+.+.|....+... . +....+++-...-.-.| +
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 788888889999999999999999998877777776653333222 1 11111222111111122 1
Q ss_pred -hhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCcccH
Q 037236 350 -VCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD---NDELVANAFVVAYAKCGSEISA 425 (953)
Q Consensus 350 -~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A 425 (953)
..-.+..+.+..-.|....| ..|..... ....|.-+...++-+.+..--.. .++..+..++
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~--aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------ 386 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILE--AIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------ 386 (1088)
T ss_pred HHHHHHHHhhHHHHhccccch--HHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------
Confidence 11112222222222211122 11211111 11134444444444443221111 1122233333
Q ss_pred HHHhccCCCCCh-hhHH--H------------HHHHHHhcCChHHHHHHHHHhhhCCC----CC-------CcchHHHHH
Q 037236 426 ENVFHGMDSRTV-SSWN--A------------LICGYAQNGDHLKALDYFLQMTHSDL----EP-------DLFSIGSLI 479 (953)
Q Consensus 426 ~~~f~~~~~~~~-~~~~--~------------li~~~~~~g~~~~A~~~~~~m~~~g~----~p-------~~~t~~~ll 479 (953)
.+.|.+...+.. ..++ . .+.-+...-+...+++-+..+..... .| -...-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 233333332211 1111 0 01111111122222222222111100 00 011123334
Q ss_pred HhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCc------ccHHHHHHHHHhcCC
Q 037236 480 LACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSL------VSWNTMIAGYSQNKL 553 (953)
Q Consensus 480 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~ 553 (953)
..|.+.-+..+++..-+.....-+ ...|..||+........+.|..+.+++..+|. .-+..+...+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 444444444444432222222111 25688999999999999999999999987654 357788888999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 554 PVEAIVLFRRMFSIGVQPC--EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 554 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
...+..++.+|.+.-..-+ ..++-.+++..+..|..+.-++.++.+...|+.-+ .-++....+.++...|.+++
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~ 619 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP 619 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence 9999999999987432222 45666778888888999999999999988876542 33444556778888888887
Q ss_pred hhcC---CCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----------
Q 037236 632 DRLK---DKDVTSWNAIIGGHGI--HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKY---------- 696 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~---------- 696 (953)
+... ++.+.....+.+.+.+ ..+++++..+-.... .|.+.|++.++.++
T Consensus 620 e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di~etpG~r~r~ 683 (1088)
T KOG4318|consen 620 EPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITETPGVRCRN 683 (1088)
T ss_pred hHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhccccCcccccC
Confidence 7654 2222222222222111 112222222211111 12333333333322
Q ss_pred -----------------HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC---
Q 037236 697 -----------------FSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYG--- 756 (953)
Q Consensus 697 -----------------~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g--- 756 (953)
.+.+. +..+..-|+..|.+.|+++.|..++.+++..|+.....-|...++.+.
T Consensus 684 ~RDr~~de~e~~~lEll~elt~-------~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~ev 756 (1088)
T KOG4318|consen 684 GRDRDTDEGEIVPLELLLELTH-------ELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEV 756 (1088)
T ss_pred CCccccccCccccHHHHHHHHh-------HhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhc
Confidence 22221 112334478899999999999999999998888888888888887765
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCch-HHHHHHHHHHHCCC
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSN--IYAGSEKWD-DVRMMRQRMKERGL 807 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~-~a~~~~~~m~~~~~ 807 (953)
|+.++....+++-++.|..+.+--..-. ..+.+++.. .|.+.+...++...
T Consensus 757 dvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 757 DVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred cchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 6777778888888877665443222222 444455555 56668887777643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-13 Score=136.96 Aligned_cols=364 Identities=13% Similarity=0.116 Sum_probs=222.2
Q ss_pred chhhHHHhhccccc---ccccccCCCCC-cccHHHHHHHHHhcCCCHHHHHHHHHHhhc--CCCChhHHHHHHHH--hcc
Q 037236 3 HSLRSIFKAKSSLS---LSAKTNNASTE-GLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQA--CGH 74 (953)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ll~~--~~~ 74 (953)
+-|++.|-+..++- .+.-.+...|+ +.+=|.++. ...+| ..+++.-+|+.|.. ++.++..-..|++. |-+
T Consensus 87 ~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~-EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N 164 (625)
T KOG4422|consen 87 TEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSR-EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN 164 (625)
T ss_pred HhchHhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhc-ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 45677765544332 33334444443 445555554 44566 79999999999988 55566666666554 333
Q ss_pred CCChhHHH-HHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHH
Q 037236 75 EKDIEIGK-RVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFV 153 (953)
Q Consensus 75 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 153 (953)
..+..-+. +.|-.+. ..| +.+..+| +.|.+.+ -+|+..| +...+|.+||+|+++-...+.|.++|+
T Consensus 165 s~~~~~~E~~~Fv~~~-~~~-E~S~~sW--------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~k 231 (625)
T KOG4422|consen 165 SSNVPFAEWEEFVGMR-NFG-EDSTSSW--------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYK 231 (625)
T ss_pred CCCCcchhHHHHhhcc-ccc-ccccccc--------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 34433222 2333444 333 2333344 3455544 4455444 455789999999999999999999999
Q ss_pred HhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHh----ccCC--
Q 037236 154 ELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLF----EVMP-- 227 (953)
Q Consensus 154 ~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f----~~m~-- 227 (953)
+... ...+.+..+||.+|.+-. +..++.+..+|+...+.||.+++|++++..++.|+++.|++.+ .+|+
T Consensus 232 E~~~-~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 232 EHRA-AKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred HHHH-hhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 9998 788999999999998764 3445889999999999999999999999999999998877654 3343
Q ss_pred --CCCeecHHHHHHHHHcCCCchH-HHHHHHHhhh--ccCCCCC----ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhC
Q 037236 228 --ERNLVSWNSIICGSSENGFSCE-SFDLLIKMMG--CEEGFIP----DVATVVTVLPVCAGEGNVDLGILVHGLAVKLG 298 (953)
Q Consensus 228 --~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~--~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 298 (953)
+|...+|.-+|.-+.+.++..+ |..++..+.- .....+| |..-|...+..|.+..+.+.|.++++......
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 3666677777777777666543 3333333310 1112222 44456666777777777777777766554321
Q ss_pred ----CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhH
Q 037236 299 ----LTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTV 374 (953)
Q Consensus 299 ----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~ 374 (953)
+.|+. ....-|..+....++....+.-+..|+.|.-.- .-|+..+.
T Consensus 387 N~~~ig~~~----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~--y~p~~~~m 436 (625)
T KOG4422|consen 387 NWKFIGPDQ----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA--YFPHSQTM 436 (625)
T ss_pred chhhcChHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--ecCCchhH
Confidence 11110 001113334444455555555555555555444 55666666
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 375 LNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
..++++....+.++...+++..++..|...+.....-++...
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 666666666666666666666665555444433333333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-13 Score=138.32 Aligned_cols=332 Identities=15% Similarity=0.087 Sum_probs=221.9
Q ss_pred chhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHh--hcCCChhhH-hHHHHHHHHhCCCCChhHHHH
Q 037236 129 LFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC--GGIADVSFG-SGVHGMAAKMGLIGDVFVSNA 205 (953)
Q Consensus 129 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 205 (953)
+++-|.|+... .+|...++.-+|+.|.. .|++.+...-..+++.. -...++..+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--
Confidence 34666666543 46888899999999999 89888877766665543 233333322 33444454444322 2222
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCch
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVD 285 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 285 (953)
+.|++.+ -+|+..| +...++..||.|+++-...+.|.+++++. .....+.+..+||.+|.+.+- .
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~--~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEH--RAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHH--HHhhheeeHHhhhhhhhHHHh----h
Confidence 3465554 4555555 46678999999999999999999999999 788899999999999987653 3
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc----C----CCCCcccHHHHHHHHHcCCChhH-HHHH
Q 037236 286 LGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK----N----NNKNVVSWNTIIGAFSMAGDVCG-TFDL 356 (953)
Q Consensus 286 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----~----~~~d~~~~~~li~~~~~~g~~~~-A~~l 356 (953)
.++.+..+|+...+.||..++|+++.+..+.|+++.|++.+-+ | .+|...+|..+|..+.+.+++.+ |...
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 4489999999999999999999999999999999988776532 2 24666677777777776666543 3333
Q ss_pred HHHHHhc--cCCCCC----chhhHHHHHHHhccccchHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCcccHH
Q 037236 357 LRKMQMK--EEEMKP----NEVTVLNVLTSCSEKSELLSLKELHGYSLRHG----FDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 357 ~~~m~~~--g~~~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
..+++.. |..++| |..-|...+..|.+..+.+.|.++++...... +.|+.
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-------------------- 395 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-------------------- 395 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH--------------------
Confidence 3333321 222333 23345566666666667776766666543211 11110
Q ss_pred HHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc
Q 037236 427 NVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD 506 (953)
Q Consensus 427 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 506 (953)
....-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++...+++..++..|...+
T Consensus 396 --------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 396 --------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 011234455566666677777777777777776777777777777777777777777777777776664443
Q ss_pred hh
Q 037236 507 SF 508 (953)
Q Consensus 507 ~~ 508 (953)
..
T Consensus 468 ~~ 469 (625)
T KOG4422|consen 468 SD 469 (625)
T ss_pred HH
Confidence 33
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-11 Score=138.08 Aligned_cols=654 Identities=13% Similarity=0.094 Sum_probs=340.3
Q ss_pred cCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHH
Q 037236 41 ESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRR 119 (953)
Q Consensus 41 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~ 119 (953)
.| ++++|.+++..+++ .|-+...|..|...+-..|+.+.+.+..-..- .-.+.|...|-.+.....+.|++..|+-
T Consensus 152 rg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 37 78888888887777 66677778888888877787777665432222 2225556677777777777788888888
Q ss_pred HhhcCCCCCchhHH---HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-----cHHHHHHHhhcCCChhhHhHHHHHH
Q 037236 120 VFDSLKTRNLFQWN---ALVSGFTKNELYPDVLSIFVELLSDTELKPDNF-----TFPCVIKACGGIADVSFGSGVHGMA 191 (953)
Q Consensus 120 ~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~ 191 (953)
.|.+..+.++.-|- --...|-+.|+...|.+-|.++.+ .. +|... +--.+++.+...++.+.|.+.++..
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88776544333232 223466677777778777777776 21 12111 1122233344444445555544444
Q ss_pred HHhC-CCCChhHHHHHHHHhhccCChHHHHHHhccCCC----CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCC
Q 037236 192 AKMG-LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIP 266 (953)
Q Consensus 192 ~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 266 (953)
...+ -..+...++.+..+|.+...++.|......+.. +|..-|.+= ..++.+ ...+.. ...++.+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~~--~~~~~~---~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRREE--PNALCE---VGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcccc--cccccc---CCCCCCc
Confidence 4321 122233444455555554444444443333321 222212100 000000 000000 0112222
Q ss_pred ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhC--CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC----CCcccHHHH
Q 037236 267 DVATVVTVLPVCAGEGNVDLGILVHGLAVKLG--LTRELMVNNALVDMYAKCGFLSEAQILFDKNNN----KNVVSWNTI 340 (953)
Q Consensus 267 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~d~~~~~~l 340 (953)
+... .-+.-++.+....+....+.....+.. +..++..+.-+.++|...|++.+|.++|..+.. .+...|--+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122233445556666666666666665 344566777788888888888888888876654 355678888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
..+|...|.+++|++.|+..+.. .|+ +..+--+|-..|-+.|
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~----~p~----------------------------------~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL----APD----------------------------------NLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc----CCC----------------------------------chhhhhhHHHHHHhcC
Confidence 88888888888888888877653 343 4445556667778888
Q ss_pred CcccHHHHhccCCCCChh------------hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 421 SEISAENVFHGMDSRTVS------------SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
+.++|.+.+..+..+|.. .--.....+.+.|+.++=+.+-..|+.... ....+ +- +.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f~---~~ 566 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--FP---RN 566 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--cc---hH
Confidence 888888888887655421 112233455566666665555555543210 00000 00 00
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhc--------ccCCcccH----HHHHHHHHhcCChhH
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEM--------EDKSLVSW----NTMIAGYSQNKLPVE 556 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~~~~----~~li~~~~~~g~~~~ 556 (953)
.+.+.. .....+..........++.+-.+.++.....+-...- ..-...-| .-++..+++.+++++
T Consensus 567 ~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 567 KKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred HHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000000 0000001111222223333333333322221111100 00011112 223444555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHhh
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDA----FVACSIIDMYAKCGCLEQSRRVFD 632 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~ 632 (953)
|+.+...+...... ..+. ..-...+......+++..|...+.
T Consensus 645 Al~vv~~a~~~~~f----------------------------------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 645 ALSVVFTALEAYIF----------------------------------FQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred HHHHHHHHHhhhhh----------------------------------hccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555442211 1111 112233344445667777776666
Q ss_pred hcCCC-----C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 633 RLKDK-----D---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 633 ~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.|... + ...||...+.+.++|+-.--.+++..... ..|+. ........-....+.+..|+.++-+...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 66532 2 34677666666666654444444444333 23322 2222223334456777778777665544
Q ss_pred hcCCCCChhHH-HHHHHHHhh--cC--------CHHHHHHHHHhCCC--CC--ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 703 LHAVKPKLEHY-ACVVDMLGR--AG--------KLDDAFKLIIEMPE--EA--DAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 703 ~~~~~p~~~~~-~~lv~~l~~--~g--------~~~eA~~~~~~~~~--~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
..|+...+ -||.-++.. .+ ..-.+..++++... .+ -..+..+++.+|..-|=+..|...+++
T Consensus 769 ---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 769 ---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEK 845 (895)
T ss_pred ---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45662222 233322221 11 23345555544322 22 456788899999999999999999999
Q ss_pred HhccCCCCc------------chHHHHHHHHHhcCCchHHHHHHH
Q 037236 768 LLELEPDKA------------ENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 768 ~~~l~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++++.|.+. .+-..|.-+|..+|+..-|.++..
T Consensus 846 vL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 846 VLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 999975432 234567889999999999988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-12 Score=150.21 Aligned_cols=438 Identities=8% Similarity=-0.031 Sum_probs=241.5
Q ss_pred hhccCChHHHHHHhccCCCCCee---cHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHH---HHHHhhhcCCC
Q 037236 210 YGKCAFVEEMVKLFEVMPERNLV---SWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVV---TVLPVCAGEGN 283 (953)
Q Consensus 210 ~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~---~ll~~~~~~~~ 283 (953)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+. .+...+...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka--~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY--Q----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh--c----cCCCCCHHHHHHHHHHHHHcCC
Confidence 44667777777777766642222 1236666666777777777777777 2 33222222 22345556677
Q ss_pred chHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHc--CCChhHHHHHHHHHH
Q 037236 284 VDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSM--AGDVCGTFDLLRKMQ 361 (953)
Q Consensus 284 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 361 (953)
++.|.++++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777777765 33456666778888888999999998888776544433334444444 555556888998888
Q ss_pred hccCCCCCc-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhH
Q 037236 362 MKEEEMKPN-EVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSW 440 (953)
Q Consensus 362 ~~g~~~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 440 (953)
+. .|+ ...+.....++.+.|-...|.++... .|+.++-...... +.+.|.+..+....+
T Consensus 197 ~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~----- 256 (822)
T PRK14574 197 RL----APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP----- 256 (822)
T ss_pred Hh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc-----
Confidence 74 344 33344445555555555444443332 1111111110000 000000000000000
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHhhhC-CCCCCc-chH----HHHHHhhccccccchhhHHHHHHHHhCCCCchhhHh
Q 037236 441 NALICGYAQNGD---HLKALDYFLQMTHS-DLEPDL-FSI----GSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGI 511 (953)
Q Consensus 441 ~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 511 (953)
.-...++ .+.|+.-++.+... +-.|.. .-| .-.+-++...++...+...++.+...+.+....+.-
T Consensus 257 -----~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 257 -----TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -----cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0000111 24455555555442 111322 111 123345566667777777777777666655556777
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccCC---------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDKS---------LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILS 581 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~ 581 (953)
++.++|...+++++|..+|.++...+ ......|.-+|...+++++|..+++++.+. .|..+. |
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----- 404 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----- 404 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc-----
Confidence 77777777777777777777764321 122355677777778888888887777763 231000 0
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDA-FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 657 (953)
.... ....||- .....++..+...|++.+|++.++++. +-|...+..+...+...|.+.+
T Consensus 405 --~~~~--------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 405 --GLPG--------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred --CCCC--------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 0000 0001111 122334555666777777777777665 3466677777777777777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037236 658 AIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH 704 (953)
Q Consensus 658 A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 704 (953)
|++.++.... ..| +..+....+.+....|++++|..+.+...+.+
T Consensus 469 A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 469 AEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 7777755555 456 44556666666677777777777776665533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-10 Score=120.52 Aligned_cols=495 Identities=11% Similarity=0.072 Sum_probs=319.8
Q ss_pred HhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCChhH
Q 037236 276 PVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN---NKNVVSWNTIIGAFSMAGDVCG 352 (953)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~ 352 (953)
++.....+.+.|.-++...++.- +.+. -|.-+|++..-++.|.+++.+.. ..+...|.+-..-=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 33344445555555555555432 2222 23334455555666666665433 2355556555444455666665
Q ss_pred HHHHHHH----HHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHH
Q 037236 353 TFDLLRK----MQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENV 428 (953)
Q Consensus 353 A~~l~~~----m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 428 (953)
...+..+ +...| +..+...|..=..+|...|..-....|...++..|++...
T Consensus 459 v~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed---------------------- 514 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED---------------------- 514 (913)
T ss_pred HHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch----------------------
Confidence 5555443 23344 5555555555555555555555555555555555543321
Q ss_pred hccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchh
Q 037236 429 FHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSF 508 (953)
Q Consensus 429 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 508 (953)
--.+|+.-...|.+.+.++-|..+|...++- ++-+...|......=-..|..+....++..++..-.+ ...
T Consensus 515 -------~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~ 585 (913)
T KOG0495|consen 515 -------RKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEI 585 (913)
T ss_pred -------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chh
Confidence 1123444444444444444444444444432 1222233333333333334444444444444443322 223
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+-....-+-..|++..|+.++.+.-+. +...|-+-+.....+.+++.|..+|.+.... .|+...|.--...---
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 3333444455567777777777665532 3346767777777777777787777776653 4566665555555555
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
++..++|+++++..++.- +.-...|-.+...|...++++.|...|..-. +..+..|-.+...--+.|+.-+|..+|
T Consensus 664 ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 677777777777666642 2245677888899999999999999988765 335668988888888889999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD 741 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~ 741 (953)
++.+-. .| |...|...+..-.+.|..+.|..+..++.+. ...+...|.--|.+..+.++-..+.+.+++. +.|
T Consensus 743 drarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~d 816 (913)
T KOG0495|consen 743 DRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHD 816 (913)
T ss_pred HHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCC
Confidence 998885 56 7788999999999999999999999888774 3334677888888888888877777777765 467
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeC
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELG 819 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~ 819 (953)
+.+.-+....+.....++.|..-+++++..+|++..++..+-..+...|.-++-..++++.... .+.-|..|+.+.
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7777778888888899999999999999999999999999999999999999998998877653 344566776554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-11 Score=132.56 Aligned_cols=343 Identities=15% Similarity=0.139 Sum_probs=205.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHh---cCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 282 GNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFD---KNNNKNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 282 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
|++++|..++.++++.. +.....|..|...|-..|+++++...+- .+...|..-|-.+..-..+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666665554 3344455556666666666666555442 2333444556555555566666666666666
Q ss_pred HHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCCcccHHHHhccCCC
Q 037236 359 KMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANA----FVVAYAKCGSEISAENVFHGMDS 434 (953)
Q Consensus 359 ~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~ 434 (953)
+..... +++...+.--...|.+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQAN---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcC---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 655532 23333333344445555666666555555555433223222222 23445555555666666655433
Q ss_pred --C---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcc----------------------hH----HHHHHhhc
Q 037236 435 --R---TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLF----------------------SI----GSLILACT 483 (953)
Q Consensus 435 --~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~----~~ll~~~~ 483 (953)
. +...+|.++..|.+...++.|......+.....++|.. .| ..+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 34567777788888888888887777776622222211 11 12233445
Q ss_pred cccccchhhHHHHHHHHhC--CCCchhhHhhHHHHHHhcCChhHHHHHHHhccc----CCcccHHHHHHHHHhcCChhHH
Q 037236 484 HLKSLHRGKEIHGFVIRNG--LEGDSFTGISLLSLYMHCEKSSSARVLFDEMED----KSLVSWNTMIAGYSQNKLPVEA 557 (953)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A 557 (953)
+....+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5666666666777777766 444567778888888888999999998888874 3566888888888888889999
Q ss_pred HHHHHHHHHcCCCCChhhH-HHHHHHhccccchHHHHHHHHHHH--------HcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 037236 558 IVLFRRMFSIGVQPCEISI-VSILSACSQLSALRLGKETHCYAL--------KAILTNDAFVACSIIDMYAKCGCLEQSR 628 (953)
Q Consensus 558 ~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~ 628 (953)
++.|...+.. .|+..-. .++-..+.++|+.++|.+++..+. ..+..|+..+.....++|...|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9888888765 5554322 233334566777887777777643 2334555666666677777777777643
Q ss_pred HH
Q 037236 629 RV 630 (953)
Q Consensus 629 ~~ 630 (953)
.+
T Consensus 547 ~t 548 (895)
T KOG2076|consen 547 NT 548 (895)
T ss_pred HH
Confidence 33
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-09 Score=110.83 Aligned_cols=457 Identities=14% Similarity=0.085 Sum_probs=246.2
Q ss_pred HhhccCChHHHHHHhccCCC---CCeecHHHHHHHHHcCCCchHHHHHHHHhhh--ccCCCCCChhhHHHHHHhhhcCCC
Q 037236 209 MYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGSSENGFSCESFDLLIKMMG--CEEGFIPDVATVVTVLPVCAGEGN 283 (953)
Q Consensus 209 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~g~~p~~~t~~~ll~~~~~~~~ 283 (953)
+|++...++.|.++++...+ .+...|-+-...=-.+|+.+....++.+-.. ...|+..+...|-.=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444445555555544432 2333444333333345554444444433110 334555555555555555555555
Q ss_pred chHHHHHHHHHHHhCCCCC--chHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 284 VDLGILVHGLAVKLGLTRE--LMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 284 ~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
.-.+..+...++.-|++.. ..+++.-...+.+.+.++-|+.+|..... .+...|......=-..|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg---------- 564 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG---------- 564 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC----------
Confidence 5555555555554443221 23444444444455555555444443221 23333433333333334
Q ss_pred HHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC---C
Q 037236 359 KMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS---R 435 (953)
Q Consensus 359 ~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 435 (953)
..+....++..++..- +.....+-....-+...|++..|+.++...-+ .
T Consensus 565 ---------------------------t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 565 ---------------------------TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred ---------------------------cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 4444444444443321 11222333333444444555555554443321 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
+...|-+-+..-..+.++++|..+|.+.... .| +..+|..-+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sg-----------------------------------TeRv~mKs~~ 659 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SG-----------------------------------TERVWMKSAN 659 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC-----------------------------------cchhhHHHhH
Confidence 3445555555556666666666666555442 12 2222222222
Q ss_pred HHHhcCChhHHHHHHHhcccC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDK--SL-VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
.---.+..++|.+++++..+. +. ..|-.+...+-+.++.+.|.+.|..-.+. -|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP--------------------- 716 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CP--------------------- 716 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CC---------------------
Confidence 222334555555555444331 11 23444444444445555554444332221 22
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
..+-.|-.|...-.+.|.+-.|..+|++.. ++|...|-..|..-.+.|..+.|..+..+.++.
T Consensus 717 -------------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 717 -------------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred -------------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 245566777777778888888888888766 457778888888888888888888888888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHH
Q 037236 670 HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSS 747 (953)
Q Consensus 670 ~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ 747 (953)
+.-+...|.--|...-+.++-......++. ..-|+...-.+..++-...+++.|.+.|.+... .| +.-+|--
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 333556666666666666654444333322 234445566677777788888899988887754 33 4568888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
+...+..||.-+.-..++.+...-+|.....+...+
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 888889999888889999999889998776655443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=150.87 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=115.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEK 664 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 664 (953)
++.+.+.+.++.+...+.. ++..+..++.. ...+++++|..++...- .++...|..++..+...|+++++.+++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444443333333222 44455566666 67889999998887764 45677788888999999999999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC
Q 037236 665 MLALG-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EA 740 (953)
Q Consensus 665 m~~~g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~ 740 (953)
+.... ..++...|..+...+.+.|+.++|.+.+++.++ ..|+ ......++.++...|+.+++.++++.... ++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 87643 234677788888999999999999999999987 5676 77788899999999999998888766543 46
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
|+..|..+..++...|+.+.|...++++++.+|+|+.....++.++...|+.++|.++++..-
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778999999999999999999999999999999999999999999999999999999887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-12 Score=127.25 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=190.8
Q ss_pred HHHhcCChhHHHHHHHhcccCCcccHH----HH-HHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSLVSWN----TM-IAGYSQNK-LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~~~~~----~l-i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
-|.+.|+++.|.+++.-..++|..+-. .| .--|.+-| ++..|.+.-+...... +-|....+.--+..-..|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 356677777777776666555443221 11 11233322 3445555444443221 11111111111122235677
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
+.|.+.+.......-.-....| .+.-.+.+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7777777666654221111122 23445778899999999998775 5677777788888999999999999998877
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCChh
Q 037236 667 ALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMP-EEADAG 743 (953)
Q Consensus 667 ~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~-~~~~~~ 743 (953)
. +-| |+..+.-|...|-+.|+-.+|.+++-.- |..-| ++++...|...|....-+++|+..|++.. .+|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7 567 7788889999999999999999886543 33445 48888889999999999999999999874 589999
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 744 IWSSLLRSC-RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 744 ~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
-|..++..| ++.|++..|...++.+...-|+|....-.|..+....|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 999999998 67899999999999999999999999999999988888643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-11 Score=124.16 Aligned_cols=191 Identities=14% Similarity=0.218 Sum_probs=165.5
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
-+.+...+.+-|+-.++.++|...|++.. +.-...|+-|..-|....+...|++-+++.++ +.| |...|..|..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhH
Confidence 34566667788888999999999999877 34567899999999999999999999999999 788 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE--ADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~ 759 (953)
+|.-.+...=|+-+|++..+ ++|+ ...|.+|.+.|.+.++++||++.|++...- .+..++..|...+...++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999999865 7776 888999999999999999999999987653 44588999999999999999
Q ss_pred HHHHHHHHHhc-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 760 MGEKVAKTLLE-------LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 760 ~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+|...+++-++ .+|+-..+..-|++-+.+.++|++|...-...
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99999999988 45655667778999999999999998765433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=120.84 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
|--+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|+.=|++.++ +.| +...|.-+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 5555666777777777777777665 34556666666666777888999999999888 678 56778888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---------hhHHHHHHHHHHhc
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---------AGIWSSLLRSCRTY 755 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---------~~~~~~ll~~~~~~ 755 (953)
.+.++++...|++..+++ |+ ++.|+.....|...+++++|.+.|+.... +|+ +.+..+++-.-++
T Consensus 441 ~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk- 516 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK- 516 (606)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-
Confidence 889999999999987754 44 67888888999999999999998876542 333 3344444433333
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|+..|+..++++++++|.-..+|..|+.+-.+.|+.++|++++++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-12 Score=135.52 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|..+..-+.....+|.|...|+..+ ..++.||+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYn 490 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYN 490 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhH
Confidence 44677899999999999999999999998888 678 67788888878888888889999888774 34556665
Q ss_pred H---HHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 715 C---VVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 715 ~---lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+ |.-.|.|.++++.|+-.|+++.. .| +.++...++..+...|+.|+|...+++++-++|.|+..-+..+.++...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 5 45668889999999988887754 44 5667777777788888899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRMKE 804 (953)
Q Consensus 790 g~~~~a~~~~~~m~~ 804 (953)
+++++|...++++++
T Consensus 571 ~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 571 GRYVEALQELEELKE 585 (638)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999988888877
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-09 Score=108.60 Aligned_cols=477 Identities=13% Similarity=0.101 Sum_probs=338.5
Q ss_pred cCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHHHH
Q 037236 316 CGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 316 ~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~a~ 391 (953)
.+++..|+.+|++... +++..|--.+..=.++.....|..++++.... -|-.. .+.--+..=...|++..++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhcccHHHH
Confidence 4566777888876543 56667777777778888888888888877653 33332 2233333445568888889
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGM--DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLE 469 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 469 (953)
++|..-.+ ..|+...+.+.|+.=.+-..++.|+.++++. ..|++..|--...-=.+.|+..-|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 98887665 5788999999999999999999999999874 4688888888888888889999999888887763 1
Q ss_pred CCcchHHHHHHhhc----cccccchhhHHHHHHHHhCCCCc-hhhHhhHHHHHHhcCCh---hHHHHH-----HHhcccC
Q 037236 470 PDLFSIGSLILACT----HLKSLHRGKEIHGFVIRNGLEGD-SFTGISLLSLYMHCEKS---SSARVL-----FDEMEDK 536 (953)
Q Consensus 470 p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~---~~A~~~-----f~~~~~~ 536 (953)
.|...-..++.+++ +...++.+.-++...+..-+... ...|..+...--+-|+. +++.-- ++.+...
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 23333334444443 45678889999998887654432 34444455444455554 333322 2333333
Q ss_pred ---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-------hHHHHHHHh---ccccchHHHHHHHHHHHHcC
Q 037236 537 ---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-------SIVSILSAC---SQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~ 603 (953)
|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+++++...++ -
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence 4457777777777889999999999999865 455321 111111122 346788999999998888 3
Q ss_pred CCCCccHHHHHHHHHH----hcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 604 LTNDAFVACSIIDMYA----KCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
++...+++.-+--||+ ++.++..|.+++.... .|...++...|..-.+.++++....++++.++ ..| |-.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHH
Confidence 4556677777666665 7889999999999877 67788888889988999999999999999999 678 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHH--
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCR-- 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~-- 753 (953)
|......-...|+.|.|..+|+-++....+..-.-.|...||.=...|.++.|..++++... .+-..+|-++..--.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccc
Confidence 98888888899999999999999976444333355677788888899999999999999876 455668988876544
Q ss_pred ---hcC-----------ChhHHHHHHHHHhcc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 ---TYG-----------ALKMGEKVAKTLLEL----EPDKAE--NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ---~~g-----------~~~~a~~~~~~~~~l----~p~~~~--~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+ ++..|..+++++... .|.... .+...-++-...|.-.+...+.++|.+
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 566788888887764 332222 222333455566777777777776643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-07 Score=103.42 Aligned_cols=567 Identities=14% Similarity=0.149 Sum_probs=314.0
Q ss_pred HHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCC
Q 037236 190 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPD 267 (953)
Q Consensus 190 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~ 267 (953)
...+.|..||.. -++....+ -+.+.+.++...|++ +.....+.+...+...+....+..++-.. ..+..|+
T Consensus 503 Y~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLda---LK~~~Pd 575 (1666)
T KOG0985|consen 503 YAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDA---LKLNSPD 575 (1666)
T ss_pred HHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHH---hcCCChh
Confidence 345667777743 34444444 567888887777765 44566788888888888888888777776 4556666
Q ss_pred hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC--CCcccHHH----HH
Q 037236 268 VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN--KNVVSWNT----II 341 (953)
Q Consensus 268 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d~~~~~~----li 341 (953)
....-+-+---.-.+.+..|..+ +-.+.- ..+-+..+.+.|.+.|-...|++.+..+.. |.++.-+. -+
T Consensus 576 ~g~LQTrLLE~NL~~aPqVADAI----LgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 576 EGHLQTRLLEMNLVHAPQVADAI----LGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL 650 (1666)
T ss_pred hhhHHHHHHHHHhccchHHHHHH----Hhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH
Confidence 55443322222222223333222 222211 122256778888999999999988876553 22221111 13
Q ss_pred HHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH-----------cCCCCchhHHH
Q 037236 342 GAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR-----------HGFDNDELVAN 410 (953)
Q Consensus 342 ~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~ 410 (953)
..|...-.++++++.++.|...+ ++.|..+...+..-+...-..+...++|+.... .++..|+.+.-
T Consensus 651 v~yFg~lsve~s~eclkaml~~N--irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~ 728 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSAN--IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF 728 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence 45556667899999999999887 777766655554444433323333333332221 14566778888
Q ss_pred HHHHHHHhcCCcccHHHHhccCCCC-------------------------------ChhhH------HHHHHHHHhcCCh
Q 037236 411 AFVVAYAKCGSEISAENVFHGMDSR-------------------------------TVSSW------NALICGYAQNGDH 453 (953)
Q Consensus 411 ~li~~y~~~g~~~~A~~~f~~~~~~-------------------------------~~~~~------~~li~~~~~~g~~ 453 (953)
..|.+-++.|++.+.+++.++-.-- |.+.| ...|..|++.=++
T Consensus 729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp 808 (1666)
T KOG0985|consen 729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP 808 (1666)
T ss_pred HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 8999999999999998887653210 11111 1223444443222
Q ss_pred HHHHHHHHHhhhCCCCC-----------CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 454 LKALDYFLQMTHSDLEP-----------DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 454 ~~A~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
...-.+.-.+++-...- ..+...-+..-+.+.+++..-...++..+..|.. |..++|+|...|..+++
T Consensus 809 s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 809 SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 22211111111100000 0001111222233344444455555555555644 56666666665554332
Q ss_pred hhH----------------------------------------------------------------HHHHHH-------
Q 037236 523 SSS----------------------------------------------------------------ARVLFD------- 531 (953)
Q Consensus 523 ~~~----------------------------------------------------------------A~~~f~------- 531 (953)
-.+ -.+++.
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rR 967 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRR 967 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHH
Confidence 111 111110
Q ss_pred ----hcc------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh----HHHHHHHhccccchHHHHHHHH
Q 037236 532 ----EME------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS----IVSILSACSQLSALRLGKETHC 597 (953)
Q Consensus 532 ----~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~ 597 (953)
+.. ..|+..-+.-+.++...+-+.+-+++++++.-. |+.++ +..+|---+-..+.....++..
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~ 1044 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHH
Confidence 000 012222223344445555555555555555421 11111 1111100000001111111111
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-------------------------CCCHHHHHHHHHHHHhc
Q 037236 598 YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-------------------------DKDVTSWNAIIGGHGIH 652 (953)
Q Consensus 598 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~li~~~~~~ 652 (953)
.+-.. + .-.+.......+-+++|..+|++.. -..+..|..+..+-.+.
T Consensus 1045 rLdny--D-----a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1045 RLDNY--D-----APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhccC--C-----chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 11000 0 0001112222333444444444322 01345799999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
|...+|++-|-+. -|+..|.-++.++++.|.+++-.+++...+ +..-+|.++ +.|+-+|++.+++.|-+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 9999999887432 367889999999999999999999987664 455566554 5789999999999998887
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 733 IIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 733 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+. -||..-....+.-|...|.++.|.-.+.. .+.+..|+..+...|.+..|...-++.
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 74 47888888999999999999999887764 456777788888888888777654443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=131.70 Aligned_cols=271 Identities=13% Similarity=0.065 Sum_probs=207.7
Q ss_pred ChhHHHHHHHhccc--CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHhccccchHHHHH
Q 037236 522 KSSSARVLFDEMED--KSLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQP----CEISIVSILSACSQLSALRLGKE 594 (953)
Q Consensus 522 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~ 594 (953)
+..+|...|..++. .|.. ....+..+|...+++++|.++|+...+. .| +...|.++|--. .+ +-+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHL---q~-~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHL---QD-EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHH---Hh-hHHHH
Confidence 45678888887654 3433 2234566788888888888888888764 33 223444443221 11 01111
Q ss_pred HHH-HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 595 THC-YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 595 ~~~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
.+. .+++. -+..+.+|.++.+.|+-+++.+.|++.|++..+ ....+|+-+..-+.....+|+|...|+..+. +
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 111 12222 233788999999999999999999999999874 3567888888888999999999999999887 6
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHH
Q 037236 671 KP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWS 746 (953)
Q Consensus 671 ~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~ 746 (953)
.| +...|..+...|.+.++++.|.-.|+.+++ +.|. .....++...+-+.|+.|+|+++++++.. +.|+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 78 567899999999999999999999998865 8888 55667788899999999999999998753 34555544
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
--+..+...++.++|...+|++-++-|+++..|.+++.+|...|+.+.|..-+..+-+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5556677789999999999999999999999999999999999999999887766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-10 Score=127.17 Aligned_cols=255 Identities=12% Similarity=-0.012 Sum_probs=154.9
Q ss_pred ccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHH
Q 037236 483 THLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIV 559 (953)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 559 (953)
...|+.+.+.+.+..+.+....+...........+...|+++.|...++.+.+. +......+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444443222222222223356677788888888888877642 44566777788888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 037236 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---D 636 (953)
Q Consensus 560 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 636 (953)
++..+.+.+..++. ....+- ...+..++....+..+.+...++++.++ +
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888876544321 111000 0011122222233334555556666554 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
.++.....+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .|+ +..+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 46667777777777778888887777777763 3444211 223333457777777777777653 344 455667
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
+..++.+.|++++|.+.|+.+.. .|+...+..+...+...|+.+.|...+++.+.+-
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77777788888888877776654 5777777777777777888888888888777653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-10 Score=115.37 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=88.3
Q ss_pred HHhcCChhHHHHHHHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 517 YMHCEKSSSARVLFDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
+-+.|++++|+..|-.+. ..++.....+...|-...++..|++++-+. ..+-|+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~--~slip~--------------------- 590 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPN--------------------- 590 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCC---------------------
Confidence 444566666666665443 233334444455555555555555555332 223333
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
|+.+.+-|.+.|-+.|+-..|.+.+-.-- +-|+.+..=|..-|....-+++|+..|++..- +
T Consensus 591 -------------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 591 -------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred -------------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 55566666666666666666655543322 23444333344445555556666666666555 5
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 671 KPDTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
.|+.+-|-.++..|. +.|++.+|..+++...++ +..+.+...-||...+..|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 666666665555443 456666666666665432 3334555555555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-09 Score=113.74 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=158.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
.+.+|-++.--|.-.|+..+|++.|.+...- -...|-.....|+-.|..++|+..+...-+ .-| ....+.-+..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHH
Confidence 6677888888888889999999999987632 345899999999999999999999988877 344 4455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--------CC-ChhHHHHHHHHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--------EA-DAGIWSSLLRSC 752 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--------~~-~~~~~~~ll~~~ 752 (953)
-|...+..+-|.++|.+.. ++.|+ +-.++-+.-+....+.+.+|..+|+.... .+ =..+|+.|+.+|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 8889999999999999875 46676 55566666667778899999999876642 11 234689999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
++.+.+++|...+++++.+.|.++.+|-.++-+|...|+.+.|...+.+.-
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=118.39 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=167.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.+++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45667788899999999999999999875 345778888999999999999999999999984 45 5677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|.++++.+.+..........+..+...+.+.|++++|.+.+++... . .+...|..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999976322222356677889999999999999999987754 3 346688889999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=121.20 Aligned_cols=289 Identities=12% Similarity=0.002 Sum_probs=157.1
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCcch-HHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHH
Q 037236 449 QNGDHLKALDYFLQMTHSDLEPDLFS-IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSAR 527 (953)
Q Consensus 449 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 527 (953)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 333222 22233444555666666666666554443333333444466667777777777
Q ss_pred HHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 528 VLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAIL 604 (953)
Q Consensus 528 ~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 604 (953)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 777776542 4445666777777777777777777777776533211 1100000
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTF---V 678 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~---~ 678 (953)
..+..+++.-......+...+.+...+. +++..+..++..+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223444455555542 47778888888888888888888888888884 5554321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCChhHHHHHHHHHHhc
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE--M-PEEADAGIWSSLLRSCRTY 755 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~--~-~~~~~~~~~~~ll~~~~~~ 755 (953)
.........++.+.+.+.++...+..+-.|+.....++..++.+.|++++|.+.|+. . ...|+..++..+...+...
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111222334666666666666655333222223444555666666666666666652 2 2245555555555555555
Q ss_pred CChhHHHHHHHHHh
Q 037236 756 GALKMGEKVAKTLL 769 (953)
Q Consensus 756 g~~~~a~~~~~~~~ 769 (953)
|+.+.|.+.+++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-10 Score=122.59 Aligned_cols=273 Identities=10% Similarity=0.032 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHhcccC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH--HHHHHhccccchHHHHH
Q 037236 520 CEKSSSARVLFDEMEDK--SLVSWNTM-IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIV--SILSACSQLSALRLGKE 594 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 594 (953)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776665442 12222222 22336677777777777777654 45543332 22335566777777777
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CH--------HHHHHHHHHHHhcCChHHHHHHHH
Q 037236 595 THCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DV--------TSWNAIIGGHGIHGYGKEAIELFE 663 (953)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~l~~ 663 (953)
.++.+.+.... ++.+...+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777766533 6777888899999999999999998888732 11 133344444444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-C
Q 037236 664 KMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-D 741 (953)
Q Consensus 664 ~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~ 741 (953)
++-+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++++.+++... .| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65432 233777888999999999999999999998865 34544321 23333455999999999988764 45 5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+....++...|...|+++.|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6678899999999999999999999999999975 45789999999999999999987754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=132.01 Aligned_cols=250 Identities=12% Similarity=0.104 Sum_probs=103.0
Q ss_pred HHHHHHhcCChhHHHHHHHh-ccc----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 037236 513 LLSLYMHCEKSSSARVLFDE-MED----KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS 587 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 587 (953)
+..++.+.|++++|.++++. +.. .|..-|..+.......+++++|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34556666666666666643 221 23344555555555566677777777766654322 23333333333 4566
Q ss_pred chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 588 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
+.+.|.++.....+.. ++...+..++..|.+.|+++++..+++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655443332 355566677788888889988888888754 357778888888899999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--C
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--E 739 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~ 739 (953)
++.++ ..| |......++..+...|+.+++.++++...+.. ..++..+..+..+|...|+.++|+..+++... +
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998 578 46667788888889999999888888886643 33456677888899999999999999988654 3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
.|+.+...+..++...|+.+.|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4778888888899999999999998888765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-08 Score=103.41 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=68.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA 683 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a 683 (953)
|-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 44455555566666666666666665544 3455566666666666666666666666665543 2244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHhc---C-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 684 CNHAGLVENGLKYFSQMQKLH---A-VKPK-LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~---~-~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+.+.++.++|..+|+.-++.. | +.|. .....-|..-+.+.+++++|......
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 666666666666655554432 1 1221 22222344445555566655554433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-09 Score=119.54 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=173.5
Q ss_pred cCChhHHHHHHHhcccC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHhccccchHHHHH
Q 037236 520 CEKSSSARVLFDEMEDK--SL-VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI--SIVSILSACSQLSALRLGKE 594 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~ 594 (953)
.|+++.|.+.+.+..+. +. ..+-.....+.+.|++++|.+.|.+..+. .|+.. .-..........|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555544432 11 11222233444556666666666655443 23322 11112334444555666666
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 037236 595 THCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWN----AIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
.++.+.+.... ++.+...+..+|...|++++|.+.+....+ .+...+. ....++...+..+++.+.+.++.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66555555432 556677788888888888888888887763 2322221 111122333344444556666665
Q ss_pred CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 668 LGHKP-----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEH---YACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 668 ~g~~P-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
. .| +...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++++.+++...
T Consensus 254 ~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 N--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred H--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3 34 6778888999999999999999999999773 454321 11122222345788888888877653
Q ss_pred CC-Ch--hHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 739 EA-DA--GIWSSLLRSCRTYGALKMGEKVAK--TLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 739 ~~-~~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.| |+ ....++++.|...|+++.|.+.++ .+++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34 45 678899999999999999999999 67788886655 669999999999999999988764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-06 Score=94.92 Aligned_cols=242 Identities=11% Similarity=0.045 Sum_probs=151.8
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHH--------hccCCChhHHHHHHHHHhhhcCCC
Q 037236 25 STEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQA--------CGHEKDIEIGKRVHELISASTQFS 95 (953)
Q Consensus 25 ~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~ 95 (953)
+-++.+|---|...... ..++-..+|.++.. .|.+...+-..|+. |-....+......|++.+ .. ++
T Consensus 24 p~svk~W~RYIe~k~~s--p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~l-v~-mH 99 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGS--PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCL-VF-MH 99 (835)
T ss_pred chhHHHHHHHHHHHccC--ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH-HH-Hh
Confidence 34566777666655442 45566677887777 66565555554422 111122233333333332 11 12
Q ss_pred CCchhhhHHHHHHHhcCChhhHHHHhhcCCC-----CCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHH
Q 037236 96 NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPC 170 (953)
Q Consensus 96 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 170 (953)
.-+.+|-.-+....++|++..-+..|++.-. .....|...+.-....|-++-++.+|++..+ +.|.. -.-
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~ee 174 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REE 174 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHH
Confidence 3456676677778889999999999987422 2334688888888888889999999999877 44543 667
Q ss_pred HHHHhhcCCChhhHhHHHHHHHHhC------CCCChhHHHHHHHHhhccCChH---HHHHHhccCCC--CCe--ecHHHH
Q 037236 171 VIKACGGIADVSFGSGVHGMAAKMG------LIGDVFVSNALIAMYGKCAFVE---EMVKLFEVMPE--RNL--VSWNSI 237 (953)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~--~~~--~~~~~l 237 (953)
.|..++..++..+|.+.+..++... ...+-..|.-+.+..++.-+.- ....+++.+.. +|. ..|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 7778888999999999888876542 2345566777766666553321 22334444443 333 368999
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhh
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCA 279 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~ 279 (953)
..-|.+.|.+++|.++|++.+ .. ..+...|+.+.++++
T Consensus 255 AdYYIr~g~~ekarDvyeeai--~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAI--QT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHH--Hh--heehhhHHHHHHHHH
Confidence 999999999999999998872 21 112334555555554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-07 Score=93.20 Aligned_cols=415 Identities=12% Similarity=0.087 Sum_probs=243.3
Q ss_pred ccCChHHHHHHhccCCC---CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHH
Q 037236 212 KCAFVEEMVKLFEVMPE---RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 288 (953)
..+++..|+.+|++... +++..|---+..=.++.....|..++++. ...-...|.. |.--+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA--vt~lPRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA--VTILPRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH--HHhcchHHHH-HHHHHHHHHHhcccHHHH
Confidence 34667788888887664 56666777777777888888888888887 2222222222 222223334568888899
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc--CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCC
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK--NNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 366 (953)
++|....+- +|+...|++.|+.=.+...++.|+.++++ +..|++.+|--...-=.++|....|..+|....+.-..
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 999887754 78999999999999999999999999987 44688888888888778889888888888877653100
Q ss_pred CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCcccHHHHhc--------cCCCC--
Q 037236 367 MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDN-DELVANAFVVAYAKCGSEISAENVFH--------GMDSR-- 435 (953)
Q Consensus 367 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~--------~~~~~-- 435 (953)
-..+...|.+....=.+...++.++-|+...+.+-... ....|..+...=-+.|+........- .+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 11122233333333345677888888888887753222 14456666655556666544443321 11122
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcc-------hHHHHHHhh---ccccccchhhHHHHHHHHhCCC
Q 037236 436 -TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLF-------SIGSLILAC---THLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 436 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
|-.+|-..+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+..+++++..++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 4456666777777778888888888888764 455221 111111111 234566666666666665 223
Q ss_pred CchhhHhhHHHHHH----hcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 505 GDSFTGISLLSLYM----HCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 505 ~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
...+++..+=-+|+ ++.++..|++++.... |.-|-..+|...+
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---------------------------------G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---------------------------------GKCPKDKLFKGYI 444 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---------------------------------ccCCchhHHHHHH
Confidence 33444444444443 3445555555554433 2334444444444
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CC----CHHHHHHHHHHHHhcCCh
Q 037236 581 SACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DK----DVTSWNAIIGGHGIHGYG 655 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~ 655 (953)
..=.+++.++..+.+++..+..+.. +..+|.-....=...|+.+.|..+|+-.. +| -...|.+.|.--...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 4434444444444444444443322 44444444444455566666666665444 22 223555555555556666
Q ss_pred HHHHHHHHHHHH
Q 037236 656 KEAIELFEKMLA 667 (953)
Q Consensus 656 ~~A~~l~~~m~~ 667 (953)
++|..+++++++
T Consensus 524 ekaR~LYerlL~ 535 (677)
T KOG1915|consen 524 EKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-09 Score=101.43 Aligned_cols=299 Identities=15% Similarity=0.146 Sum_probs=195.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCChhHH
Q 037236 450 NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEKSSSA 526 (953)
Q Consensus 450 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 526 (953)
+.+.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++---+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887631 11223334566667777888888888877765421111 23344566778889999999
Q ss_pred HHHHHhcccCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 527 RVLFDEMEDKSL---VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 527 ~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 603 (953)
+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 999998876433 35666888899999999999998888877655532211
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037236 604 LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKD---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGI 680 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~l 680 (953)
...|.-|...+.-..+++.|..++.+..+.| +..--.+...+...|++++|++.++...+.+..--..+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1223344555555677888888888776333 223334556688889999999999999885322234567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI-IEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
..+|.+.|+.+++..++.++.+ ..+....-..|.+......-.++|...+ +....+|+......|+..-...
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 8899999999999999988876 4455555555655554444455555444 4445567766666555432111
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCcee
Q 037236 760 MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCS 814 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 814 (953)
++-|+|.+...+.+.|....++..|.+.
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 1235566777777777666666656543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-07 Score=96.69 Aligned_cols=523 Identities=14% Similarity=0.129 Sum_probs=303.6
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHH
Q 037236 195 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTV 274 (953)
Q Consensus 195 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 274 (953)
+..|+...|-.+-+.+ +.+......| ...|-.-+..+..+|+...-...|++.. +...+......|...
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrAL-raLpvtqH~rIW~ly 144 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRAL-RALPVTQHDRIWDLY 144 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHH-HhCchHhhccchHHH
Confidence 4566666666665544 3344444443 4457667777788888888888888763 344555566677788
Q ss_pred HHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChh-HH
Q 037236 275 LPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVC-GT 353 (953)
Q Consensus 275 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~-~A 353 (953)
++.....+-++.+..+++.-++.. +..-+-.|..+++.+++++|.+.+......|... .+.|+.. .-
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~gkSn~ql 212 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKGKSNHQL 212 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhcccchhhH
Confidence 888888888888888888777653 3335667777788888888877777766544321 1111110 11
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC--Cc--hhHHHHHHHHHHhcCCcccHHHHh
Q 037236 354 FDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD--ND--ELVANAFVVAYAKCGSEISAENVF 429 (953)
Q Consensus 354 ~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~~f 429 (953)
+..+..+... .|+. -.... .+.+++.|+. +| ...+++|.+.|.+.|.++.|..+|
T Consensus 213 w~elcdlis~----~p~~----------------~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 213 WLELCDLISQ----NPDK----------------VQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHHHHHHh----Ccch----------------hcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 1111111111 1111 00000 1112222221 22 346788888888888888888888
Q ss_pred ccCCCC--ChhhHHHHHHHHHhc----------------C------ChHHHHHHHHHhhhCCC-----------CCCcch
Q 037236 430 HGMDSR--TVSSWNALICGYAQN----------------G------DHLKALDYFLQMTHSDL-----------EPDLFS 474 (953)
Q Consensus 430 ~~~~~~--~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~g~-----------~p~~~t 474 (953)
++.... .+.-|+.+.+.|++- | +.+-.+.-|+.+.+.+. +.+..+
T Consensus 272 eeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 272 EEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred HHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 764332 222233333333321 1 12223344444443321 011111
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHh-CC----CCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc-------cHH
Q 037236 475 IGSLILACTHLKSLHRGKEIHGFVIRN-GL----EGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV-------SWN 542 (953)
Q Consensus 475 ~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~ 542 (953)
+..-. -...|+..+....+.++++. .+ ..-...+..+.+.|-..|+++.|+.+|++..+-+-. .|-
T Consensus 352 W~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 352 WHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred HHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 11111 11234455556666666643 11 112346778889999999999999999998764332 455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC----------C-------ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 037236 543 TMIAGYSQNKLPVEAIVLFRRMFSIGVQ----------P-------CEISIVSILSACSQLSALRLGKETHCYALKAILT 605 (953)
Q Consensus 543 ~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 605 (953)
.-...-.++.+++.|+++.++....--. | +...|+..++--...|-++..+.+++.+++..+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 5555566778889999988776532111 1 1122333444444567888889999999887664
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHH-HHHHHHHHHHh-c--CChHHHHHHHHHHHHCCCCCCHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLK----DKDVT-SWNAIIGGHGI-H--GYGKEAIELFEKMLALGHKPDTFTF 677 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~-~--g~~~~A~~l~~~m~~~g~~P~~~t~ 677 (953)
++.+.-...-.+....-++++.+++++-. -|++. .||+.+.-+.+ . -..+.|..+|++.++ |+.|...-+
T Consensus 510 -TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 510 -TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred -CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 33333333444556677899999999765 35553 78887766554 2 368999999999999 677854333
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHH--------------------hcCCCCChhHHHH----------------HHHH
Q 037236 678 VGIL--MACNHAGLVENGLKYFSQMQK--------------------LHAVKPKLEHYAC----------------VVDM 719 (953)
Q Consensus 678 ~~ll--~a~~~~g~~~~a~~~~~~m~~--------------------~~~~~p~~~~~~~----------------lv~~ 719 (953)
.-|+ ..=..-|....|+.+++++.. .+|+.-+...|-- ..++
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL 667 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3333 222345777777777776532 1344333333321 2344
Q ss_pred HhhcCCHHHHHHHHHhCCC--CC--ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPE--EA--DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~--~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
=.+.|..+.|..++.-... .| +...|.+.=.--.+|||-+.-..++
T Consensus 668 EtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 668 ETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567888889888865543 33 5678888888888999955544444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-06 Score=97.26 Aligned_cols=626 Identities=12% Similarity=0.066 Sum_probs=332.4
Q ss_pred hhHHHHHHHhcCChhhHHHHhhcCCC--CCch-----hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHH
Q 037236 101 NTRLITMYSLCGFPLDSRRVFDSLKT--RNLF-----QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIK 173 (953)
Q Consensus 101 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~ 173 (953)
+..+.+.|.+.|-+..|.+.|..+.. +.++ .-..+ ..|...-.++++++.++.|.. .+++.+.++...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~-~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLS-ANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHH-HHHHhhhHHHHHHHH
Confidence 34566777788888888877776642 1111 11112 234445567778888888887 677777666555555
Q ss_pred HhhcCCChhhHhHHHHHHHHh-----------CCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--------------
Q 037236 174 ACGGIADVSFGSGVHGMAAKM-----------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------------- 228 (953)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------- 228 (953)
-+...=..+.-.++|+..... ++.-|+.+.-..|.+-++.|.+.+..++.++-..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 444433333344444433221 3556777777888999999999888887655321
Q ss_pred -----C-----CeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCC-----------hh-------------hHHHH
Q 037236 229 -----R-----NLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPD-----------VA-------------TVVTV 274 (953)
Q Consensus 229 -----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-----------~~-------------t~~~l 274 (953)
| |...+--=+-.|.-.++..+-+++|-+- ...+-.|- .. .-..+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQk--vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK--VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhh--cCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHH
Confidence 1 1111100111222223333333333332 11111110 00 01112
Q ss_pred HHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHH
Q 037236 275 LPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTF 354 (953)
Q Consensus 275 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 354 (953)
..-+-+.+++..-...++..+..| ..|+.++|+|...|....+-.+ +.+.+ |..-=+..+.-||...++.-|.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEE
Confidence 233344455555566667777777 5678889999888877654321 12211 1111122233344444333322
Q ss_pred HHHHHHHhccC--C----------------CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC--CchhHHHHHHH
Q 037236 355 DLLRKMQMKEE--E----------------MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD--NDELVANAFVV 414 (953)
Q Consensus 355 ~l~~~m~~~g~--~----------------~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~ 414 (953)
-.|++=+...+ . -+.|...|..++. .+-..-+++.+.++..+++ .|+.-.+.-+.
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 22211000000 0 0112222222221 0111123444444444432 23334444444
Q ss_pred HHHhcCCcccHHHHhccCC-CCCh-----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 415 AYAKCGSEISAENVFHGMD-SRTV-----SSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 415 ~y~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
++...+-..+-.++++++. ++++ ..-|.||-...+. +..+..+..+++-.-. .| .+...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhhhHH
Confidence 4555554445455444432 1111 1122222222222 2233333333332211 01 111222233334
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIG 568 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 568 (953)
++|..+|+.. ..+....+.|++ ..++++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+.
T Consensus 1065 EEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1065 EEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 4444444332 222222233332 23455556555555544 356999999999999999998877543
Q ss_pred CCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 037236 569 VQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGG 648 (953)
Q Consensus 569 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 648 (953)
-|+..|..++.++++.|.+++-..++.++.+..-+|. +-+.|+-+|++.+++.+-++... -||..-...+..-
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDR 1203 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHH
Confidence 3567788999999999999998888888888766544 44678888888888887766543 4566666667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
|...|.++.|.-+|. +...|..|...+.+.|.+..|...-+.+ -+..+|.-+-.++...+.+.-
T Consensus 1204 cf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhH
Confidence 777777777766664 3345677777777777777776654333 234556656566665555443
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
|.-.= +..--.+.-..-|+..|...|-+++-...++..+.++--+-+.+.-|+-+|++-
T Consensus 1268 AQiCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1268 AQICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 32110 000112233556778888888888888888888888888888888888888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-09 Score=112.13 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHH
Q 037236 587 SALRLGKETHCYALKAI-LTN--DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIE 660 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 660 (953)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555565432 222 24567888889999999999999999876 4577899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 661 LFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 661 l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
.|++.++ +.| +..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 678 567788899999999999999999999876 4565332222233455678999999999664332
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLL-------ELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.++..|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22223432 2223345665444 2444443 5567788899999999999999999999988776643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-08 Score=97.65 Aligned_cols=367 Identities=10% Similarity=0.009 Sum_probs=246.3
Q ss_pred chhHHHHHHHHHHhcCCcccHHHHhccCCCC-ChhhHHHHHHHHHhcCC--hHH-------------HHHHHHHhhh---
Q 037236 405 DELVANAFVVAYAKCGSEISAENVFHGMDSR-TVSSWNALICGYAQNGD--HLK-------------ALDYFLQMTH--- 465 (953)
Q Consensus 405 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~~-------------A~~~~~~m~~--- 465 (953)
+...-...+..|...++-+.|.....+.+.. ....-|.|+.-+.+.|. .++ |++.+.-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344445566677777777777777776654 23333334333333321 111 1121111111
Q ss_pred ------------CCCCCCcchHHHHHHhhccc--cccchhhHHHHHHHH-hCCCCchhhHhhHHHHHHhcCChhHHHHHH
Q 037236 466 ------------SDLEPDLFSIGSLILACTHL--KSLHRGKEIHGFVIR-NGLEGDSFTGISLLSLYMHCEKSSSARVLF 530 (953)
Q Consensus 466 ------------~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 530 (953)
..+.|+..+...-+.+++.. ++-..+.+.+-.+.. .-+..++....++.+.|...|+..+|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 12344444445555554433 333444444444443 456678888999999999999999999999
Q ss_pred HhcccCCcccHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC
Q 037236 531 DEMEDKSLVSWNTM---IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTND 607 (953)
Q Consensus 531 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 607 (953)
++...-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-+...-...+.+.|..+-+..++.... +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 98876665554443 223567888888888888776532 112222222223333456677777776666654322 3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH-H
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGIL-M 682 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll-~ 682 (953)
...+-.-...+...|+.++|.-.|.... +-+..+|..++.+|...|++.+|.-+-+..... -| +..++..+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 3444444567778899999999999765 458899999999999999999999998887663 34 555555442 3
Q ss_pred HHH-hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChh
Q 037236 683 ACN-HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~ 759 (953)
.|. ...--++|.+++++..+ +.|+ ......+..++.+.|+.+++..++++... .||....+.|....+..+.+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 333 23335789999887754 8898 77778889999999999999999998765 799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcch
Q 037236 760 MGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~ 778 (953)
.+...+..++.++|+|..+
T Consensus 489 ~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhcCccchHH
Confidence 9999999999999987754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-08 Score=101.97 Aligned_cols=80 Identities=14% Similarity=-0.022 Sum_probs=40.2
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCC-hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCC-chHHHHHHHhhHh
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPD-VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRE-LMVNNALVDMYAK 315 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 315 (953)
.+-|.++|++++|++.|.+. -...|| +.-|...--++...|+++.+.+--...++. .|+ +-.+..-..++-.
T Consensus 122 GN~~f~~kkY~eAIkyY~~A----I~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQA----IELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhcccHHHHHHHHHHH----HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 33455666666666666665 123445 444445555555666666555444433332 232 2233334445555
Q ss_pred cCChhHHH
Q 037236 316 CGFLSEAQ 323 (953)
Q Consensus 316 ~g~~~~A~ 323 (953)
.|++++|+
T Consensus 196 lg~~~eal 203 (606)
T KOG0547|consen 196 LGKFDEAL 203 (606)
T ss_pred hccHHHHH
Confidence 66666653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-08 Score=95.77 Aligned_cols=311 Identities=12% Similarity=0.089 Sum_probs=167.4
Q ss_pred CcccHHHHhccCCCC--ChhhHHH-HHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc--ccccchhhHHH
Q 037236 421 SEISAENVFHGMDSR--TVSSWNA-LICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH--LKSLHRGKEIH 495 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~ 495 (953)
.+.+|.+++.++... +....|. |.-+|.+..-++-+.++++--+.. -||+ |+..=+.+|.. .=.-..++.-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 455666666665432 2333333 334566667677666666665543 2332 23333333322 21222222222
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHh-----cCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 496 GFVIRNGLEGDSFTGISLLSLYMH-----CEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 496 ~~~~~~g~~~~~~~~~~li~~y~~-----~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
+.+.+.+-..-+ .+.-.++ ..+-+.|++++-.+.+-=+.+--.|+--|.+.++..+|..+.+++.- ..
T Consensus 243 k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 222222211111 1111222 12345666666554432223334455568888999999888776632 23
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAI 645 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 645 (953)
|-......+..+ ++..-.+....+.-|.+.|.-+-. .++..-.+|
T Consensus 316 P~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 322222222221 111111122223344444443321 122233455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-ACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~~~g 724 (953)
.+.+.-..++++.+-.++.+..- +..|...-..+..|.+..|.+.+|.++|-++. ...++ +...| ..|...|.+.|
T Consensus 366 As~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcC
Confidence 55555666777777777776664 23344444467888888999999999887762 22222 23344 44577889999
Q ss_pred CHHHHHHHHHhCCCCCChhH-HHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 725 KLDDAFKLIIEMPEEADAGI-WSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+.+-|.+++-++..+.+..+ ...+.+.|.+.+.+=-|-++++.+-.++|.
T Consensus 443 kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 99999999888765544444 444555799999999999999988888884
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-07 Score=100.07 Aligned_cols=432 Identities=13% Similarity=0.069 Sum_probs=220.6
Q ss_pred HhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh
Q 037236 296 KLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV 372 (953)
Q Consensus 296 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~ 372 (953)
...+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|+.+++.-.... -.|+..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcc
Confidence 334668999999999999999999999999997543 345679999999999999999999999876543 234433
Q ss_pred h-HHHHHHHhc-cccchHHHHHHHHHHHHcC--CC--CchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHH
Q 037236 373 T-VLNVLTSCS-EKSELLSLKELHGYSLRHG--FD--NDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICG 446 (953)
Q Consensus 373 t-~~~ll~~~~-~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 446 (953)
+ +-..-+.|. +.+.++++...-..++... .. ..+..+-.+.-+|...-. ...++.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s----- 454 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS----- 454 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH-----
Confidence 3 333334444 3355555555444444311 00 011112222212211100 000000
Q ss_pred HHhcCChHHHHHHHHHhhhCC-CCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhH
Q 037236 447 YAQNGDHLKALDYFLQMTHSD-LEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSS 525 (953)
Q Consensus 447 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 525 (953)
.+.....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+..+.+-..+...+..|.-.+...+++.+
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 01112345667777766543 234333333332 44556677777777777777666677777777777777777777
Q ss_pred HHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 526 ARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSI--GVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 526 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
|+.+.+..... |.+.--.-+..-..-++.++|+.....+... ...|=..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-------------------------- 585 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-------------------------- 585 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh--------------------------
Confidence 77776654431 1111111112222245555655555554431 0000000
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-- 672 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-- 672 (953)
.|+-....+.+..+. ..|. .++..+.. ... -+.+.+..-.. |...-+.|
T Consensus 586 --------------------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~ 642 (799)
T KOG4162|consen 586 --------------------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGP 642 (799)
T ss_pred --------------------hhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCC
Confidence 000111111111111 0011 11111111 111 00000000000 11111111
Q ss_pred C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hh
Q 037236 673 D------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AG 743 (953)
Q Consensus 673 ~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~ 743 (953)
+ ...|......+...+..++|...+.+..+ +.|. ...|.-....+...|.++||.+.|..... .|+ +.
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 1 12233444455566666666655554432 3343 44455555566666666666666554432 343 44
Q ss_pred HHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEK--VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+..++...+...|+...++. ++..+++++|.++.++..|+.++.+.|+.++|..-+...-
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56666666666666666666 7777777777777777777777777777777777665553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-06 Score=93.57 Aligned_cols=530 Identities=15% Similarity=0.078 Sum_probs=278.4
Q ss_pred hcCChhhHHHHhhcCC-CCCch-hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHH
Q 037236 110 LCGFPLDSRRVFDSLK-TRNLF-QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGV 187 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 187 (953)
.-|+++.|..+++... .|+.. .|-.+...-...|+.--|...|. ..|++..++.+
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa-----------------------ai~dvak~r~l 512 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA-----------------------AIGDVAKARFL 512 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH-----------------------HHHHHHHHHHH
Confidence 3466777777776654 24433 46555555555555544444443 33445555555
Q ss_pred HHHHHH-------hCCC-CChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 188 HGMAAK-------MGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 188 ~~~~~~-------~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
|+...- -|-+ .+-+-..+++.++. .++.+|..+|-+-. + -...|..|....++++|+.+-+..
T Consensus 513 hd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 513 HDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 543321 1222 22222333443333 35677777763321 1 122344555556666666665443
Q ss_pred ccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc--CCCCCcccH
Q 037236 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK--NNNKNVVSW 337 (953)
Q Consensus 260 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~d~~~~ 337 (953)
|.+.-...-.+-++++...|+-+.|-++ ..+..-.-+-|..|.|.|.+..|.+.... ....|....
T Consensus 584 ---~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il 651 (1636)
T KOG3616|consen 584 ---GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEIL 651 (1636)
T ss_pred ---CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHH
Confidence 2221111222334444444444433322 11112223456777777777666555422 112344444
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 037236 338 NTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYA 417 (953)
Q Consensus 338 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 417 (953)
..+..++.+..-+++|-++|+++.. |+. .+. .|-
T Consensus 652 ~~ia~alik~elydkagdlfeki~d------~dk-----ale-----------------------------------~fk 685 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD------FDK-----ALE-----------------------------------CFK 685 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC------HHH-----HHH-----------------------------------HHH
Confidence 4455555555556666666655521 111 111 111
Q ss_pred hcCCcccHHHHhccCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHH
Q 037236 418 KCGSEISAENVFHGMDSRTVS-SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 418 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
+-.-+.+|.++-+-.-...++ .-......+.+.|+++.|+..|-+... ....+.+......+.+|..+++
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 111111222211111000111 112223344555666666655544321 1122333344455555655555
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
.+...... ..-|.-+.+-|+..|+++.|.++|-+.. .++--|..|.++|+|+.|.++-.+.. .|.
T Consensus 757 niqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~----~~e---- 821 (1636)
T KOG3616|consen 757 NIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH----GPE---- 821 (1636)
T ss_pred Hhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc----Cch----
Confidence 55443322 2234455666777777777777775542 34455677777777777776654442 221
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChH
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 656 (953)
.....|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-++|..+
T Consensus 822 -----------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~d 867 (1636)
T KOG3616|consen 822 -----------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDD 867 (1636)
T ss_pred -----------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcch
Confidence 12333444445556678888898888888887753 66788889888
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 657 EAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+.+++.++- .|+ ..|...+..-+...|++.+|...|-+.. -|.+-+++|-..+.+++|.++-+
T Consensus 868 dmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 868 DMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 888887663 443 4577778888888999999888776552 26667888888899999988876
Q ss_pred hCCC----CCChhHHHHH------HHHHHhcCChhHHHHH------HHHHhcc-----CCCCcchHHHHHHHHHhcCCch
Q 037236 735 EMPE----EADAGIWSSL------LRSCRTYGALKMGEKV------AKTLLEL-----EPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 735 ~~~~----~~~~~~~~~l------l~~~~~~g~~~~a~~~------~~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.-.. +.-...|.-- +....+||-++.|... ++-++++ ...-+..++.++-.+-..|+++
T Consensus 933 tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 933 TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchh
Confidence 5321 1112344322 2223456655555432 2222222 3445677888888999999999
Q ss_pred HHHHHHHHH
Q 037236 794 DVRMMRQRM 802 (953)
Q Consensus 794 ~a~~~~~~m 802 (953)
+|.+-+-..
T Consensus 1013 daskhyvea 1021 (1636)
T KOG3616|consen 1013 DASKHYVEA 1021 (1636)
T ss_pred hhhHhhHHH
Confidence 998754433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=120.06 Aligned_cols=211 Identities=13% Similarity=0.009 Sum_probs=159.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFE 663 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 663 (953)
++.++|...++.+.+.... +...+..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456666667666665433 66778888889999999999999999876 3456788889999999999999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC
Q 037236 664 KMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA 740 (953)
Q Consensus 664 ~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~ 740 (953)
+.++ ..|+. ..+..++.++...|++++|...++++.+. ..|+ +..+..+..+|...|++++|.+.++++.. .|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9999 57753 33444555677789999999999988653 2354 55677888899999999999999988654 44
Q ss_pred C-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 741 D-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 741 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+ ...++.+...+...| +.+...++.+++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 445566666667777 4788888888776544444445589999999999999888 656553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-05 Score=85.10 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=102.1
Q ss_pred ccCChHHHHHHhccCCCCCeec--HHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHH
Q 037236 212 KCAFVEEMVKLFEVMPERNLVS--WNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGIL 289 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 289 (953)
+...+..|..+++.+..+++.+ |..+..-|+..|+++.|.++|.+. ..+.-.|..+.+.|.++.|..
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----------chhHHHHHHHhccccHHHHHH
Confidence 3444555555555554433322 334444555555555555555443 112334444555555554444
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCC
Q 037236 290 VHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKP 369 (953)
Q Consensus 290 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p 369 (953)
+-... .|.+.....|-+-..-+-+.|++.+|++++-.+.+||. -|..|-+.|..++.+++..+- .|
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-------h~ 878 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-------HG 878 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-------Ch
Confidence 43322 12233344444444455566777777777777666663 356677777777777776653 22
Q ss_pred ch--hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCC
Q 037236 370 NE--VTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMD 433 (953)
Q Consensus 370 ~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 433 (953)
+. .|-..+-.-+...|++..|..-+-.. .-+.+-++||-..+-+++|.++-..-.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 22 23344445555667777666554432 235667788888888888888776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=84.68 Aligned_cols=50 Identities=32% Similarity=0.509 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH 686 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~ 686 (953)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-09 Score=98.28 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVD 718 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 718 (953)
+...+.-+|...|+...|.+-+++.++ ..| +..++..+...|...|..+.|.+.|+...+ +.|+ .+..|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 345577789999999999999999998 577 567888888999999999999999998876 6676 677888888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
.++..|++++|...|++....|+ +.+|.+++....+.|+.+.|+..+++.++++|+++.+...+++...+.|++.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999988876554 56788888777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 037236 795 VRMMRQRMKERGL 807 (953)
Q Consensus 795 a~~~~~~m~~~~~ 807 (953)
|.-..+....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-07 Score=99.61 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
++...-.-..-+...+++.+.+++++...+. .++....+..-|..+...|+...-..+-..+++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 4444455556667778888888888887765 24455555555555556665554444444444432 335566777777
Q ss_pred HHHhcCChhHHHHHHHhcccCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDKS---LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.= +-...-+.-+---|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 7777788888888888765433 3478888888888888888887776654420 10111111112223444455555
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL--GH 670 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~ 670 (953)
.+++.++..... .|+.+.+-+.-+.-..+.+.+|...| +..+.. .+
T Consensus 400 e~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f-------------------------------~~~l~~ik~~ 447 (611)
T KOG1173|consen 400 EKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYF-------------------------------QKALEVIKSV 447 (611)
T ss_pred HHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHH-------------------------------HHHHHHhhhc
Confidence 555544443321 24444444444444444444444444 444321 00
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhH
Q 037236 671 KP----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGI 744 (953)
Q Consensus 671 ~P----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~ 744 (953)
.+ -..+++.|..+|.+.+.+++|+..|+..+. ..| +..+|+++.-.|...|+++.|.+.|.+... .|+-.+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 01 123455555555555555555555555543 222 245555555555555555555555554432 455555
Q ss_pred HHHHHHHH
Q 037236 745 WSSLLRSC 752 (953)
Q Consensus 745 ~~~ll~~~ 752 (953)
...+++.+
T Consensus 525 ~~~lL~~a 532 (611)
T KOG1173|consen 525 ISELLKLA 532 (611)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-09 Score=112.81 Aligned_cols=228 Identities=13% Similarity=0.141 Sum_probs=165.5
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHc-----CC-CCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcCC----------C-
Q 037236 576 IVSILSACSQLSALRLGKETHCYALKA-----IL-TNDA-FVACSIIDMYAKCGCLEQSRRVFDRLKD----------K- 637 (953)
Q Consensus 576 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~- 637 (953)
+..+-..|...|+++.|...+....+. |. .|.+ ...+.+..+|...+++++|..+|+++.. |
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444555555555555555444332 21 1121 1223577889999999999999988751 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCC
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL-----GHKP-DT-FTFVGILMACNHAGLVENGLKYFSQMQKLHA--VKP 708 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~P-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p 708 (953)
-..+++.|..+|...|++++|...+++..+- |..+ .. .-+..+...|.+.+.+++|..++....+.+. ..+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2347888888999999999998888876541 2222 22 3377788899999999999999998876554 222
Q ss_pred C----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------C--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhcc---
Q 037236 709 K----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------E--A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLEL--- 771 (953)
Q Consensus 709 ~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--- 771 (953)
+ ..+++.|..+|...|+++||+++++++.. . + ....++.|...|...++.+.|.+.++....+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 56799999999999999999999988753 1 2 2456788888999999999999988888764
Q ss_pred ----CCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 772 ----EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 772 ----~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.|+-..+|..|+-+|...|++++|.++...+.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35556678899999999999999999877664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-08 Score=97.84 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=151.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHH
Q 037236 450 NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVL 529 (953)
Q Consensus 450 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 529 (953)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-....++-+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776655544332 2334444455566677777777777766665556666777777778888888888777
Q ss_pred HHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHhccccchHHHHHHHHHH
Q 037236 530 FDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE-------ISIVSILSACSQLSALRLGKETHCYA 599 (953)
Q Consensus 530 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 599 (953)
.+++. ..+.........+|.+.|++.+...++..|.+.|+--|+ .++..+|+-+...+..+.-++.+...
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66554 346667778888899999999999999999888765543 34444554444443333333333322
Q ss_pred HHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 600 LKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK--DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 600 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
.. ....++.+..+++.-+.+||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-... .| ++-.
T Consensus 256 pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L 330 (400)
T COG3071 256 PR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLL 330 (400)
T ss_pred cH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhH
Confidence 21 12224444445555555555555555554444311 221 11111233344444444444443332 22 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+.+|...|.+.+.|.+|..+|+...+ ..|+..+|+-+.++|.+.|+.++|.+..++
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 44445555555555555555554432 445555555555555555555555544443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=118.58 Aligned_cols=177 Identities=14% Similarity=0.029 Sum_probs=143.9
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.+++++|...+++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456889999999876 45778899999999999999999999999999 578 456788889999999999999999
Q ss_pred HHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 697 FSQMQKLHAVKPKL-EHYACVVDMLGRAGKLDDAFKLIIEMPE--EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 697 ~~~m~~~~~~~p~~-~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
++++.+ +.|+. ..+..+...+...|++++|++.+++... +|+ +..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999977 56662 2333445567778999999999988753 353 4556777777889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|++......++..|...| ++|....+.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998888999999999888 477775555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-08 Score=103.31 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=134.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..+..+...|...|++++|.+.|++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 45666778888889999999999888764 243 233445566667
Q ss_pred HhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 619 AKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
...|++++|.+.|++.. +.+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777654 3455667777777777888888888888877643223 3445666677777888888888
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
..+++..+ ..|+ ...+..+...+...|++++|.+.+++... +++...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88887765 2343 55677777778888888888877776533 334556666666777778888887777766554
Q ss_pred CC
Q 037236 772 EP 773 (953)
Q Consensus 772 ~p 773 (953)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=84.10 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-07 Score=101.20 Aligned_cols=396 Identities=14% Similarity=0.090 Sum_probs=230.7
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 399 RHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 399 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
...+..|..+|..|.-+...+|+++.+-+.|++...- ....|+.+...|...|....|+.+++.-....-.|+..+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3346678899999999999999999999999886432 4568999999999999999999999887654433544443
Q ss_pred HHHH-Hhh-ccccccchhhHHHHHHHHh--CC--CCchhhHhhHHHHHHhcC-----------ChhHHHHHHHhcccC--
Q 037236 476 GSLI-LAC-THLKSLHRGKEIHGFVIRN--GL--EGDSFTGISLLSLYMHCE-----------KSSSARVLFDEMEDK-- 536 (953)
Q Consensus 476 ~~ll-~~~-~~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~~~~~-- 536 (953)
..+. ..| .+.+.++++..+-..++.. +. ......+..+.-+|...- .-.++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333 334 3456667766666666552 11 112333444444443221 123344555554332
Q ss_pred -CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc-CCCCCccHHHHH
Q 037236 537 -SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKA-ILTNDAFVACSI 614 (953)
Q Consensus 537 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 614 (953)
|....--+.--|+..++.+.|+...++..+.+-.-+...|..+.-.++..+++..|..+.+..... |.. -..-..-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchhh
Confidence 222222233345666777777777777777655556666665555666666777777776555432 211 0000011
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-D-TFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~-~~t~~~ll~a~~~~g~~~~ 692 (953)
+..-..-++.++|......+. ..|...- +..+.|+-...+++...+.-.--.| + ..|+..+..-... +...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L----~~we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~ 626 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKL----ALWEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKS 626 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHH----HHHHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhh
Confidence 111222445555544433322 1111110 1122233334445554443321133 2 2333333322221 1111
Q ss_pred HHHHHHHHHHhcCCCCCh--------hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHH
Q 037236 693 GLKYFSQMQKLHAVKPKL--------EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~--------~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
+..-.. + ......|+. ..|....+.+.+.+..++|...+.+... +-.+.+|.-.+..+-..|+.++|.
T Consensus 627 ~~se~~-L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELK-L-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccc-c-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 110000 1 223344442 3466778899999999999977766543 335667777777778899999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH--HHHHHHHC
Q 037236 763 KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM--MRQRMKER 805 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~ 805 (953)
.++..++.++|+++.+...++.+|.+.|+-.-|.. +...+-+.
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999998777776 55555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-07 Score=93.46 Aligned_cols=283 Identities=12% Similarity=0.110 Sum_probs=168.1
Q ss_pred cCCChhHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCccc
Q 037236 346 MAGDVCGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEIS 424 (953)
Q Consensus 346 ~~g~~~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 424 (953)
-..++++|+++|-+|.+.. |..+ +-.++-+.+.+.|..+.|..+|..++++. |...-.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~q-------------- 105 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQ-------------- 105 (389)
T ss_pred hhcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHH--------------
Confidence 3468899999999997632 2221 22233334455566666666665554431 110000
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCC
Q 037236 425 AENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 425 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
-......|..-|...|-++.|..+|..+.+.+.-
T Consensus 106 -----------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------------------------------- 139 (389)
T COG2956 106 -----------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------------------------------- 139 (389)
T ss_pred -----------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------------------------
Confidence 0112334556667777777777777777654310
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhcccCCccc--------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVS--------WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
-......|+..|-+..++++|.++-+++.+-+... |.-+...+....+.+.|..++.+..+.. |+
T Consensus 140 -a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~---- 212 (389)
T COG2956 140 -AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KK---- 212 (389)
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc----
Confidence 11122334555555666666665555444332222 3334444455667778888887777652 32
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH----HHHHHHHHHHhc
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT----SWNAIIGGHGIH 652 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~ 652 (953)
.+...-.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.
T Consensus 213 ------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 213 ------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred ------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3444455677888889999999999988865543 566778899999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh---cCCHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR---AGKLDDA 729 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~---~g~~~eA 729 (953)
|+.++.+..+.++.+. .|+...-..+...-....-.++|..+..+-++ -+|+...+..|++.-.. -|+..+.
T Consensus 263 g~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 263 GKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred CCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhh
Confidence 9999999999998884 44444444444433344445666665554434 47998888888876532 3455566
Q ss_pred HHHHHhCC
Q 037236 730 FKLIIEMP 737 (953)
Q Consensus 730 ~~~~~~~~ 737 (953)
+.++..|.
T Consensus 338 L~~lr~mv 345 (389)
T COG2956 338 LDLLRDMV 345 (389)
T ss_pred HHHHHHHH
Confidence 66665553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-07 Score=92.25 Aligned_cols=283 Identities=11% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHH
Q 037236 347 AGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 347 ~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
.|++..|.++..+-.+.+ -. ....|.....+..+.|+.+.+-+.+..+.+..-.++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~--e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 355555555555544432 11 122333344445555666666666655555433455556666666677777777776
Q ss_pred HHhcc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCC
Q 037236 427 NVFHG---MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGL 503 (953)
Q Consensus 427 ~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 503 (953)
.-.++ |..+++.........|.+.|++.+...++.+|.+.|+--|+..- .+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l--------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL--------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH---------
Confidence 65544 44567778888888999999999999999998888754443211 00
Q ss_pred CCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 504 EGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 504 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
...++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ..+
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 112233333333333333444445555553 34555666777788888888888888888887777752 222
Q ss_pred HHhccccchHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHH
Q 037236 581 SACSQLSALRLGKETHCYALK-AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 657 (953)
-.+.+.++.+.-.+..+...+ .+- ++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 234444444444444333333 222 22445555555555555555555555433 3444455555555555555555
Q ss_pred HHHHHHHHH
Q 037236 658 AIELFEKML 666 (953)
Q Consensus 658 A~~l~~~m~ 666 (953)
|.+.+++.+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=98.66 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred HHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~ 692 (953)
..+...++.++|.++|....+ .++.+.-.+..+|.-.|+++-|+..|+++++.|+. +...|..+.-.|.-.+++|-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 334444555555555555442 23334444445555555666666666666655532 44555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
++.-|++.... -- +|+ +-+|.+|.......||+..|.+.++.++.
T Consensus 377 ~L~sf~RAlst-at--------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 377 VLPSFQRALST-AT--------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred hHHHHHHHHhh-cc--------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 55555554321 01 232 45888888888889999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 771 LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 771 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
-+|++..+++.|+-+-...|+.++|..+.+..+..
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999999999888764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-05 Score=91.19 Aligned_cols=639 Identities=14% Similarity=0.085 Sum_probs=320.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 28 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 28 ~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
...|..+..-|+... +-..|...|+++.+ ++.+..........++...+++.|..+.-..-++.....-..-|-...-
T Consensus 492 apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 557888888888888 88889999999988 6667777778888899999999998884333211111111122223455
Q ss_pred HHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHH--hhcCCCh
Q 037236 107 MYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKA--CGGIADV 181 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~--~~~~~~~ 181 (953)
.|.+.++...|..-|+..-+ | |.-+|..+..+|.+.|.+..|+..|.+... +.|+. +|...-.+ -+..|..
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhH
Confidence 67788888899888887543 3 556899999999999999999999988766 55653 33333222 3667888
Q ss_pred hhHhHHHHHHHHhCCCCChhHHHHHHHHhhcc-------CChHHHHHHhccCCCCCeecHHHHH-HHHHcCC----CchH
Q 037236 182 SFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-------AFVEEMVKLFEVMPERNLVSWNSII-CGSSENG----FSCE 249 (953)
Q Consensus 182 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------g~~~~A~~~f~~m~~~~~~~~~~li-~~~~~~g----~~~~ 249 (953)
.++...++.++..- ..-...-+.+...+.|+ |-...|...|+.-. ..+...+ ...+... -...
T Consensus 647 keald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 647 KEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhH
Confidence 88888877776532 11111222233333222 22222222222111 1111111 0000000 0123
Q ss_pred HHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcC
Q 037236 250 SFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKN 329 (953)
Q Consensus 250 A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 329 (953)
|..+|.+. . .. .|+......+.. +..+.+..++.. ++-.-.+|+- ...++-
T Consensus 722 ac~~f~q~--e-~~-~vn~h~l~il~~----------------q~e~~~~l~~~d----~l~Lg~~c~~--~hlsl~--- 772 (1238)
T KOG1127|consen 722 ACYIFSQE--E-PS-IVNMHYLIILSK----------------QLEKTGALKKND----LLFLGYECGI--AHLSLA--- 772 (1238)
T ss_pred HHHHHHHh--c-cc-chHHHHHHHHHH----------------HHHhcccCcchh----HHHHHHHHhh--HHHHHh---
Confidence 44455554 2 11 333322222222 222222222221 1111111111 011111
Q ss_pred CCCCcccHHHHHHHHHc----C----CChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 330 NNKNVVSWNTIIGAFSM----A----GDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHG 401 (953)
Q Consensus 330 ~~~d~~~~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 401 (953)
-+..+|..++..|.+ . .+...|+..+.+..+. ..|...+...|...
T Consensus 773 --~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-------------------- 826 (1238)
T KOG1127|consen 773 --IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-------------------- 826 (1238)
T ss_pred --hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh--------------------
Confidence 125567666655543 1 1123455555544432 12222222222222
Q ss_pred CCCchhHHHHHHHHHHhcCCcccHHHHhccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHH
Q 037236 402 FDNDELVANAFVVAYAKCGSEISAENVFHGM---DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGS 477 (953)
Q Consensus 402 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 477 (953)
...|.+.-|...|-.- .++...+|.-+...+.++.+++.|...|...+.. .| |...+..
T Consensus 827 ---------------sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG 889 (1238)
T KOG1127|consen 827 ---------------SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLG 889 (1238)
T ss_pred ---------------hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHH
Confidence 2223333333333221 1235566777777777777777777777776653 22 2233322
Q ss_pred HHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcc--------cCCcccHHHHHHHHH
Q 037236 478 LILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME--------DKSLVSWNTMIAGYS 549 (953)
Q Consensus 478 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~ 549 (953)
....... .|+.-++..+|..-. -++..-|-.-.....
T Consensus 890 ~Ali~ea-----------------------------------vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 890 EALIPEA-----------------------------------VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred HHHhHHH-----------------------------------HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 2222222 233333333333211 022233333333344
Q ss_pred hcCChhHHHHHHHHHHH---------cCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc-CCCCCccHHH----HHH
Q 037236 550 QNKLPVEAIVLFRRMFS---------IGVQPCEISIVSILSACSQLSALRLGKETHCYALKA-ILTNDAFVAC----SII 615 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li 615 (953)
++|+.++-+..-+.+-. .+.+-+.+.|........+++..+.+......++.. ....+...|+ .+.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 55554443333222211 123334455665555555665555554443332210 0111333333 345
Q ss_pred HHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDT-FTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~-~t~~~ll~a~~~~g~~~~ 692 (953)
..+...|.++.|...+.... +-|..+-..-+.. ...|+++++++.|++...-- -.-|. +....++-+...++.-+.
T Consensus 1015 RL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~ 1093 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKND 1093 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchH
Confidence 56677788888887777655 2222222222222 34678999999999998731 11132 334445555567777788
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhh---cCCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGR---AGKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~---~g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
|...+-+..... .|+....-+|.-++.- .-...-+++-+++.+. .-++.....++ +...|+-..+.+..
T Consensus 1094 A~~lLfe~~~ls--~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i--~~~~~r~~~vk~~~ 1169 (1238)
T KOG1127|consen 1094 AQFLLFEVKSLS--KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELI--YALQGRSVAVKKQI 1169 (1238)
T ss_pred HHHHHHHHHHhC--ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHH--HHHhhhhHHHHHHH
Confidence 887766664432 3444444444333322 2222223333333322 11222222222 46778888999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHh
Q 037236 766 KTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 766 ~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+++.-..|.|+..+.+|++=|++
T Consensus 1170 qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1170 QRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999864443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=87.78 Aligned_cols=218 Identities=11% Similarity=0.029 Sum_probs=124.3
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHH
Q 037236 278 CAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTF 354 (953)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 354 (953)
|-..+++..+....+.+++ +.+....+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3355677777777777777 3333334444444445567888999888876544 56678999988888889999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhcc---
Q 037236 355 DLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHG--- 431 (953)
Q Consensus 355 ~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--- 431 (953)
..|+.... +.||... .+.-|--.-.+.|+++.....-..
T Consensus 96 Kcy~nAl~----~~~dN~q----------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 96 KCYRNALK----IEKDNLQ----------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHh----cCCCcHH----------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999887 4455332 111111111222222221111111
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCcchHHHHHHh------hccccccchhhHHHHHHHHhCCC
Q 037236 432 MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSD-LEPDLFSIGSLILA------CTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 432 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
.....-..|..+..++.-.|++..|..+.++..... -.|+...+.-.... ....|.++.+.+.+..-.. .+.
T Consensus 138 l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~ 216 (700)
T KOG1156|consen 138 LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIV 216 (700)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHH
Confidence 122245678889999999999999999999887754 34555555433222 1223333333333222111 111
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhccc
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMED 535 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 535 (953)
.....--.-.+.+.+.+++++|..++..+..
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 1222223334556666666666666666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-06 Score=89.50 Aligned_cols=363 Identities=12% Similarity=0.073 Sum_probs=215.4
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHHHHHhhccccccchhhHHH
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGSLILACTHLKSLHRGKEIH 495 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~ 495 (953)
.+.+..++|.+.++.....|..+.-.-...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-... ..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 467889999999986655565555556677888999999999999998765432 222222222221111 00
Q ss_pred HHHHHhCCCCchhhHhh---HHHHHHhcCChhHHHHHHHhcc--------cCCcc----------cHHHHHHHHHhcCCh
Q 037236 496 GFVIRNGLEGDSFTGIS---LLSLYMHCEKSSSARVLFDEME--------DKSLV----------SWNTMIAGYSQNKLP 554 (953)
Q Consensus 496 ~~~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~~--------~~~~~----------~~~~li~~~~~~g~~ 554 (953)
..+......| ..+|.. ..-.+...|++.+|+++++... +.|.- .--.|.-.+-..|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111122 223332 2345667899999999998772 11111 112244566778999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHH---HHhccccchHHH--HHHH------------HHHHHcCCCCCccHHHHHHHH
Q 037236 555 VEAIVLFRRMFSIGVQPCEISIVSIL---SACSQLSALRLG--KETH------------CYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 555 ~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a--~~~~------------~~~~~~~~~~~~~~~~~li~~ 617 (953)
++|.+++...++.. .+|......+. .+...-..+-.+ ...+ ..+.+. -.....--++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998875 45543332222 222222222221 1111 111110 00122233456666
Q ss_pred HHhcCCHHHHHHHhhhcCCCC-HHHHHHHHH-HHH-hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037236 618 YAKCGCLEQSRRVFDRLKDKD-VTSWNAIIG-GHG-IHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVEN 692 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~ 692 (953)
|. +..+.+.++-...+..- ...+..++. ++. +.....+|.+++.+.-+. .|.. +.....+......|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 64 45667777777776322 223333433 322 223577888888887774 5644 445555666778999999
Q ss_pred HHHHHH--------HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhc
Q 037236 693 GLKYFS--------QMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP--------EEAD-AGIWSSLLRSCRTY 755 (953)
Q Consensus 693 a~~~~~--------~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~--------~~~~-~~~~~~ll~~~~~~ 755 (953)
|.+++. .+.+ .+.. +.+...++.++.+.+.-+-|.+++.+.. ..+. ..+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 4422 3333 4566788899999887655555554432 2222 23444445555678
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 798 (953)
|+-++|...++++++.+|+|....+.+.-.|+... .+.|..+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999999999999999999999999988888653 3444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-07 Score=97.10 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=152.5
Q ss_pred CChhHHHHHHHhcccC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 521 EKSSSARVLFDEMEDK-------SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
+..+.+..-+.++... ....|..+...|.+.|+.++|+..|++..+. .|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~--------------------- 96 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPD--------------------- 96 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC---------------------
Confidence 4555566555555421 1234666666677777777777777666653 343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
+...++.+...|...|++++|...|++.. +.+..+|..+...+...|++++|++.|++..+ .
T Consensus 97 -------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~ 161 (296)
T PRK11189 97 -------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--D 161 (296)
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 56788889999999999999999999886 34577889999999999999999999999998 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH--HHHHHHhCCC------CCCh
Q 037236 671 KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD--AFKLIIEMPE------EADA 742 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e--A~~~~~~~~~------~~~~ 742 (953)
.|+..........+...++.++|...|++... ...|+...+ .++..+ .|++.+ +.+.+.+... +...
T Consensus 162 ~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 162 DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67544222222334567889999999977643 233433222 333333 454433 3433332211 1234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCC-CCcchHHHHHHHHHh
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEP-DKAENYVLVSNIYAG 788 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~ 788 (953)
..|..++..+...|+.+.|...++++++++| +.......+..+...
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999997 555554555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-05 Score=88.91 Aligned_cols=275 Identities=12% Similarity=0.042 Sum_probs=168.1
Q ss_pred hHHHHHHHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 524 SSARVLFDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 524 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
..|...+.... ..+...||.|.-. ...|.+.-|...|-+-.... +-+..+|..+--.|....+++.|.+.+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666543 3566788887655 55566666666665554432 3455677777777788888888888888777
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL---- 668 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 668 (953)
...+. +...|--..-.-...|+.-++..+|..-. -++..-|-.-..-...+|+.++-+..-+++-..
T Consensus 878 SLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 65432 33333333333345677777777776521 245555655555566777766554443332211
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 669 ----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC----VVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 669 ----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
+-.| +...|...+....+.+.+.+|.+...+.+.-...+-+...|+. ...++...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1245 5577888888888888888888887776554334444455553 334556678888877777666555
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH---HHHhcCCchHHHHHHHHH
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN---IYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~---~y~~~g~~~~a~~~~~~m 802 (953)
.+.-+-++-+.. .-.|+++.+...+++++.+-.++.-.-++++. ....++.-+.|....-+.
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 555554444443 45678899999999998876555544444444 344556666666644333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.7e-06 Score=83.13 Aligned_cols=280 Identities=10% Similarity=-0.028 Sum_probs=154.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-HhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS-ACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
|+.....+...+...|+.++|+..|++.+.. .|+.++-.-+-. -+...|+.+....+...+....- .....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 5556666777777777777777777766543 344332111111 12334555555444444332210 0111121112
Q ss_pred HHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
.......+++.|..+-++..+ +++..+-.-...+...|+.++|.-.|+..+. +.| +...|..|+..|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 222334556666666665542 3333443334456666777777777776666 455 5566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH-HHHhh-cCCHHHHHHHHHhCCC-CCCh-hHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHYACVV-DMLGR-AGKLDDAFKLIIEMPE-EADA-GIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~~~lv-~~l~~-~g~~~eA~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
||.-.-+...+..+ -+..+...+. +.+.- ----++|.+++++... +|+- .....+...|...|..+.+...+++
T Consensus 386 EA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 76665555444221 1223332221 22211 1123566777765543 4543 2445555566777777777777777
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEE 847 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~ 847 (953)
.+...| |...++.|++++...+.+.+|...+..... ..|+.+.-.+-|+.|++
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHh
Confidence 777666 344567777777777777777776554433 56888888888888877
Q ss_pred HHH
Q 037236 848 QIS 850 (953)
Q Consensus 848 ~~~ 850 (953)
+++
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.5e-06 Score=81.68 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=40.2
Q ss_pred hhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHH-----hccccchHHHHHH
Q 037236 319 LSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTS-----CSEKSELLSLKEL 393 (953)
Q Consensus 319 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~-----~~~~~~~~~a~~i 393 (953)
-+.|++++-.+...=+..--.++--|.++++..+|..+.+++.. ..|-.+....+..+ ..+...+..|.+.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 35566655433221122222345567889999999998877632 34444433333322 1122234445555
Q ss_pred HHHHHHcCCC
Q 037236 394 HGYSLRHGFD 403 (953)
Q Consensus 394 ~~~~~~~g~~ 403 (953)
+..+-.++..
T Consensus 346 fqlVG~Sa~e 355 (557)
T KOG3785|consen 346 FQLVGESALE 355 (557)
T ss_pred HHHhcccccc
Confidence 5554444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-07 Score=100.55 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=164.6
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhcccC----------Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCC
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMEDK----------SLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSI---GVQPC 572 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 572 (953)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555788888888888888888765431 111 2334556788888888888888887642 11122
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC----------CCCHH-H
Q 037236 573 EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK----------DKDVT-S 641 (953)
Q Consensus 573 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~ 641 (953)
... -..+++.|...|.+.|++++|...+++.. .+.+. .
T Consensus 279 h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred CHH-------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 211 23345566777888888888777776543 22333 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLAL---GHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK 709 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~ 709 (953)
.+.++..+...+++++|..++.+..+. -+.++ ..++..|...|.+.|++++|.++|+++++.. +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 566777788899999999998876653 12233 3578899999999999999999999987653 12233
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 710 -LEHYACVVDMLGRAGKLDDAFKLIIEMP--------EEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 710 -~~~~~~lv~~l~~~g~~~eA~~~~~~~~--------~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+++.|...|.+.++.++|.++|.+.. ..|+ ..++.+|...|...|++|.|++..++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5567888889999999998988887643 1344 35899999999999999999999988763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-05 Score=85.33 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=132.7
Q ss_pred CchhhhHHHH--HHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCC-------CCccc
Q 037236 97 DFIINTRLIT--MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELK-------PDNFT 167 (953)
Q Consensus 97 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-------p~~~~ 167 (953)
|+.+..++++ .|.-.|+.+.|-+-.+.+.. -..|..|.+.+.+..+.+-|.-.+-.|....|.+ -+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 3444444544 35566777776555554432 3456667766666666665555554443322211 11122
Q ss_pred HHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCC-eecHHHHHHHHHcCCC
Q 037236 168 FPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN-LVSWNSIICGSSENGF 246 (953)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~ 246 (953)
=..+.-.....|-+++|+.++.+-.+ |..|-..|-..|.+++|.++-+.-.+-. -.||..-..-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 22222223456667777777776655 3344455666777777777654432211 1134444444445666
Q ss_pred chHHHHHHHHhhhccCCC-------------------CCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHH
Q 037236 247 SCESFDLLIKMMGCEEGF-------------------IPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN 307 (953)
Q Consensus 247 ~~~A~~l~~~m~~~~~g~-------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 307 (953)
.+.|++.|++. ..... ..|..-|.---.-+-..|+.+.|..++..... |-
T Consensus 874 i~~AleyyEK~--~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 874 IEAALEYYEKA--GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 77777777654 11110 11222233333334456666666666665543 34
Q ss_pred HHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 037236 308 ALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQ 361 (953)
Q Consensus 308 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 361 (953)
+++...|-.|..++|-++-++- .|......+.+-|-..|++.+|+.+|.+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5666667777777777776542 355667778888888888888888887764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-06 Score=82.51 Aligned_cols=192 Identities=13% Similarity=0.028 Sum_probs=152.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
...|.-.|...|+...|..-+++..+ .+..+|..+...|.+.|+.+.|.+.|++.++ +.| +....+....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 34466788889999999999998873 3455888888889999999999999999988 577 55678888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
.|.+++|...|++...+...---..+|..++-+-.++|+++.|.+.+++... +..+...-.+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8899999999998876432222256788888888899999999999987764 23456677777778888899999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++...--+-......+...+-...|+-+.+.+.-..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9888887777788888888888888998888887777665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-05 Score=85.83 Aligned_cols=241 Identities=13% Similarity=0.079 Sum_probs=149.8
Q ss_pred hHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
.+.++..+..+++.|.+-++...+ .++.-++....+|...|.+.+....-....+.|-.. ..-|
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~------------- 294 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADY------------- 294 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHH-------------
Confidence 344555555666666666665443 233334555566777777766665555544333110 0000
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
..+. .....+...|.+.++.+.|...|.+... ++... ..+....+++++..+...-
T Consensus 295 -------klIa--------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 295 -------KLIA--------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY 352 (539)
T ss_pred -------HHHH--------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 0000 0111145577777888888888887552 22111 2233345666666655554
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hh
Q 037236 668 LGHKPDTFT-FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AG 743 (953)
Q Consensus 668 ~g~~P~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~ 743 (953)
+.|.... ...-.+.+.+.|++..|+..+.++++ ..|+ ...|+.-.-+|.+.|.+.+|++=.+.... .|+ ..
T Consensus 353 --~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 353 --INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred --hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 4564322 33336778889999999999999876 3465 77888888899999999888877665543 333 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.|.-=+.++....+++.|..++++.++.+|++......+.+.+..+....
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC
Confidence 55555556677788999999999999999999888887777777643333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00041 Score=75.12 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=67.6
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHH--HHHhhH-
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNA--LVDMYA- 314 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~- 314 (953)
+.-+..+|++++|.....++ ..+.+-|...+-.-+-++...+.++.|..+.. +.+. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Ki---l~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKI---LSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHH---HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHH
Confidence 44566677788888888777 33334455556666666667777777663322 2221 011111 234444
Q ss_pred -hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhcc
Q 037236 315 -KCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKE 364 (953)
Q Consensus 315 -~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 364 (953)
+.+..++|.+.++.....|..+.-.-...+.+.|++++|+.+|+.+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56777777777774444343344444455667777777777777775543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.2e-07 Score=87.91 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=180.7
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-ILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~ 585 (953)
--+.+..+|.+.|.+.+|.+.|+.-.+ +-+.||--|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. .-.....
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 345677889999999999999887653 56678888889999999999999999888765 677777754 4446667
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
.+..+.+.+++..+.+.... ++....++...|.-.++.+-|...|.++. -.+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78889999999888886433 56666677778888899999999999876 467888999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 663 EKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 663 ~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
++.+..--.|+. ..|..+.......|++.-|.+.|+-... -.|+ .+.++.|.-+-.|.|++++|..+++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999886555643 4588888888899999999999988754 3344 7788888888899999999999998764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=84.11 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..+|++.++ +.|+. +..+..++...|++++|...|+..+. +.|+ ...|..+..++.+.|++++|...+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356667666 56654 44567778888888888888888865 5565 7778888888888888888888888775
Q ss_pred C--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 738 E--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 738 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
. +.++..|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 4467788888888899999999999999999999999999988877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=88.49 Aligned_cols=278 Identities=15% Similarity=0.069 Sum_probs=139.4
Q ss_pred HHhcCChhHHHHHHHhccc--CCcccH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc----c--cc
Q 037236 517 YMHCEKSSSARVLFDEMED--KSLVSW-NTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS----Q--LS 587 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~~ 587 (953)
+...|++++|++.++.-.. .|..+| ......+.+.|+.++|..+++.+++. .|+...|-..+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556666666666655433 233333 33445566666666666666666665 355555555444443 1 11
Q ss_pred chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH-HHHHHhhhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE-QSRRVFDRLKDKDV-TSWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 588 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
..+.-.++++.+...-...+.. ..+.-.+..-..+. .+...+..+..+.+ .+++.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344445555444332111111 11100011101111 12222233333333 34444444444444434444444443
Q ss_pred HHC----C---------C-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 666 LAL----G---------H-KPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 666 ~~~----g---------~-~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
... | . .|.. .++..+...|.+.|++++|+++.++.++ .+|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 322 1 0 1222 2445555666677777777777776655 4566 6666667777777777777
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch----------HHHHHHHHHhcCCchHHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN----------YVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~~a~ 796 (953)
|.+.++.... ..|-.+-+-....+.+.|+++.|+..+.....-+- ++.. ..--+..|...|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777766543 23444444444555666777777777666654432 1111 123456777888888887
Q ss_pred HHHHHH
Q 037236 797 MMRQRM 802 (953)
Q Consensus 797 ~~~~~m 802 (953)
+-+..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 755544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=94.33 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=154.7
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
+.|++..|.-.++..++.... +...|--|.-.-...++-..|+..+.+.. +.|....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 456677777777776666543 55666666666666666666777776655 34556666667777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHH--------HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 037236 662 FEKMLALGHKPDTFTFVG--------ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI 733 (953)
Q Consensus 662 ~~~m~~~g~~P~~~t~~~--------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~ 733 (953)
++.-+.. +|-..-... .-....+...+.+..++|-.+....+.++|++.+.+|.-+|--.|.++.|.+.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766552 211000000 001122223344556666666666676678889999999999999999999999
Q ss_pred HhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 734 IEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 734 ~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
+.+.. +| |..+||-|+.....-.+-++|+.+|.+++++.|.-..+...|+-.|...|-++||.+.+-.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 98865 45 7889999999999999999999999999999999999999999999999999999995433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.4e-06 Score=86.12 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=143.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CH
Q 037236 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG-CL 624 (953)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 624 (953)
..+...++.++|+.+..++++. .|+. ..+|+....++.+.| ++
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~----------------------------------ytaW~~R~~iL~~L~~~l 88 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGN----------------------------------YTVWHFRRLCLEALDADL 88 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--Cchh----------------------------------HHHHHHHHHHHHHcchhH
Confidence 3445566777788777777764 4442 223333344444555 56
Q ss_pred HHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 625 EQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG--KEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 625 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
+++...++++. .++..+|+...-.+.+.|+. ++++.+++++++ ..| |..+|.....++.+.|+++++++.++
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 78888887765 45666787666556666653 678888889988 567 77888888889999999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhhc---CCH----HHHHHHHHhCC-C-CCChhHHHHHHHHHHhcC----ChhHHHHH
Q 037236 699 QMQKLHAVKPK-LEHYACVVDMLGRA---GKL----DDAFKLIIEMP-E-EADAGIWSSLLRSCRTYG----ALKMGEKV 764 (953)
Q Consensus 699 ~m~~~~~~~p~-~~~~~~lv~~l~~~---g~~----~eA~~~~~~~~-~-~~~~~~~~~ll~~~~~~g----~~~~a~~~ 764 (953)
++++. .|+ ...|+....++.+. |.+ ++++++..++. . +.|...|+.+.+.+..++ +...+...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 99773 344 45565555555444 323 46777775443 3 457889999999988743 45678888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhc
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+..+++.+|.++.++..|+++|...
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00023 Score=77.85 Aligned_cols=396 Identities=13% Similarity=0.100 Sum_probs=209.8
Q ss_pred ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHHHHHHHhcCChHHHHHHH
Q 037236 384 KSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNALICGYAQNGDHLKALDYF 460 (953)
Q Consensus 384 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 460 (953)
.+++..+....+.+++ +++....+.....-.+...|+.++|......-... +.+.|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555555555 33333333333333445567777777766554433 5578888888888888999999999
Q ss_pred HHhhhCCCCCCcch-HHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc
Q 037236 461 LQMTHSDLEPDLFS-IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV 539 (953)
Q Consensus 461 ~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 539 (953)
+..... .||... +.-+--.-++.++++........+.+.. ...-.
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------------------------~~~ra 144 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------------------------PSQRA 144 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------------------------------hhhHH
Confidence 888764 343322 2211111122233332222222222211 12334
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHH------HhccccchHHHHHHHHHHHHcCCCCCccHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIG-VQPCEISIVSILS------ACSQLSALRLGKETHCYALKAILTNDAFVAC 612 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 612 (953)
.|...+.++--.|++..|..+.++..+.. -.|+...+..... .....|.++.+.+.+......-++ ....--
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhh
Confidence 56666666666666666666666665543 2344443332221 122344444444443332221110 112223
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHH-HHHHHHHhcCChHH--------------------------------
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD--KDVTSWN-AIIGGHGIHGYGKE-------------------------------- 657 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g~~~~-------------------------------- 657 (953)
.-.+.+.+.|++++|..++..+.. ||-.-|. .+..++.+--+.-+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 345566667777777777776653 3322222 22223321111112
Q ss_pred ---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cC----------CCCC--hhHHHHHHHH
Q 037236 658 ---AIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKL---HA----------VKPK--LEHYACVVDM 719 (953)
Q Consensus 658 ---A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~----------~~p~--~~~~~~lv~~ 719 (953)
.-+++..+++.|+.| +|..+.+.+-.-...+--.++...+... .| -.|. ..++..++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 223333444444433 2222222222211111111111111110 00 1344 3455677888
Q ss_pred HhhcCCHHHHHHHHHhCCCC-CChh-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEE-ADAG-IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~-~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+-+.|+++.|+..++..... |+.+ .+.+=...+.-.|+++.|-..++.+.++|-.|....-.-++....+++.++|.+
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 99999999999999987653 4432 333344556677899999999999999998777766677888889999999999
Q ss_pred HHHHHHHCCCcc-----CCceeEEEe
Q 037236 798 MRQRMKERGLQK-----EAGCSWIEL 818 (953)
Q Consensus 798 ~~~~m~~~~~~~-----~~~~s~i~~ 818 (953)
+..+....|..- +..|.|..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhH
Confidence 998888776421 235777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-05 Score=84.41 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=171.5
Q ss_pred hhHHHHHHhcCChhHHHHHHHhccc---CCccc---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHH---HH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMED---KSLVS---WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-SIVS---IL 580 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll 580 (953)
..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++..+. .|+.. .+.. ..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHH
Confidence 3344445555666665555544332 12221 122233456778888888888888765 34433 2221 11
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH
Q 037236 581 SACSQLSALRLGKETHCYALKAILTND-AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 656 (953)
......+....+.+.... .....|+ ......+...+...|++++|...+++.. +.+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111223444444444433 1112222 2344456678889999999999999876 445677888888999999999
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 037236 657 EAIELFEKMLALGH-KPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-A--CVVDMLGRAGKLDDAF 730 (953)
Q Consensus 657 ~A~~l~~~m~~~g~-~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~lv~~l~~~g~~~eA~ 730 (953)
+|+..+++...... .|+. ..+..+...+...|++++|..++++........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999999887421 1232 245577888899999999999999875422211221111 1 2333444455333333
Q ss_pred HH---HHhC----CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC-C--------CCcchHHHHHHHHHhcCCchH
Q 037236 731 KL---IIEM----PEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE-P--------DKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 731 ~~---~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~-p--------~~~~~~~~l~~~y~~~g~~~~ 794 (953)
++ .... +.+...........++...|+.+.|...++.+...- + ......+..+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1111 111112222345556677888999998888876532 1 135566788899999999999
Q ss_pred HHHHHHHHHH
Q 037236 795 VRMMRQRMKE 804 (953)
Q Consensus 795 a~~~~~~m~~ 804 (953)
|.+.......
T Consensus 326 A~~~L~~al~ 335 (355)
T cd05804 326 ALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHH
Confidence 9997666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00072 Score=84.86 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKD-------K----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG--HKP--DTFT 676 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~P--~~~t 676 (953)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++..... ..| ...+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 4455566667777777776655431 1 11233444555666688888887777765521 112 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCh----hHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-----ACVVDMLGRAGKLDDAFKLIIEMPEE--ADA----GIW 745 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~lv~~l~~~g~~~eA~~~~~~~~~~--~~~----~~~ 745 (953)
+..+.......|+.++|...++.+............+ ......+...|+.++|.+++...... ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556677888888888777774422111111111 11123445578888888887665431 111 113
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELE------PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..++...|+.+.|...++++++.. ++...++..++.+|...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556677788888888888887752 12234667788888888888888886655544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00081 Score=75.12 Aligned_cols=43 Identities=16% Similarity=0.000 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccch
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
....+...+.++|.+..|-+-|.+.-.+ ...++++.+.|+.++
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 4556677888888888887777664332 234555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-06 Score=86.68 Aligned_cols=179 Identities=14% Similarity=0.061 Sum_probs=109.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DV---TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF----T 676 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~----t 676 (953)
....+..++..|.+.|++++|...|+++. .| +. ..|..+..+|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 34445556666666677777777766554 12 11 3455566666667777777777777666 344221 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH
Q 037236 677 FVGILMACNHA--------GLVENGLKYFSQMQKLHAVKPKLE-HYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS 747 (953)
Q Consensus 677 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ 747 (953)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+. +.+....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHHH-----------HHHHH
Confidence 44444455443 5566666666666553 23311 111111 1111111000 01124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556788899999999999999997765 478999999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=90.74 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN----HAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~----~~g~ 689 (953)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchh
Confidence 345566678888888877765 4555556667778888888888888888876 34443 3333444332 2235
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh-hHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL-KMGEKVAK 766 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 766 (953)
+.+|..+|+++.+.+ .+++...+.+.-+....|+++||.+++++... +.++.++.+++-.+...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 778888888875533 35556666777777777777777777665443 22344555555555555554 55666666
Q ss_pred HHhccCCCCc
Q 037236 767 TLLELEPDKA 776 (953)
Q Consensus 767 ~~~~l~p~~~ 776 (953)
++...+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-05 Score=81.15 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=113.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhc
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-EHYACVVDMLGRA 723 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~~~ 723 (953)
+..+|.+.++++.|+..|.+.+.....||..+ +....+++....+.. .-+.|.. .-.-.=..-+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhc
Confidence 44567778899999999999887655554322 233345555544443 2255652 1122226678889
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
|++.+|...+.++.. +.|+..|.+...++.+.|++..|..-++..++++|+....|..=+-++....+|+.|.+.+.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 346788888888889999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 037236 802 MKE 804 (953)
Q Consensus 802 m~~ 804 (953)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 766
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.2e-05 Score=74.27 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=181.4
Q ss_pred HHHHhcCChhHHHHHHHhcccCCcccHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHhccccchH
Q 037236 515 SLYMHCEKSSSARVLFDEMEDKSLVSWNTMI---AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-ILSACSQLSALR 590 (953)
Q Consensus 515 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~ 590 (953)
..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-|.+.++. +||-..-.. --....+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 3344456666666666666665555554442 3466666666666666666553 454221110 011234556666
Q ss_pred HHHHHHHHHHHcCCCCC--ccHH------------HHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC
Q 037236 591 LGKETHCYALKAILTND--AFVA------------CSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG 653 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~--~~~~------------~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 653 (953)
.|..=|..++++..... ..++ ...+..+.-.|+...|+.....+. .-|...+..-..+|...|
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 66666666665433111 0111 112233445688888888887766 337777788888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHH---HH------HH
Q 037236 654 YGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE----HYACV---VD------ML 720 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l---v~------~l 720 (953)
++..|+.=++..-+.. .-|..++.-+...+...|+.+.++...++..+ +.||-. +|..| +. ..
T Consensus 204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777766631 22556677777788888999888888777755 677722 22221 11 23
Q ss_pred hhcCCHHHHHHHHHhCC-CCCC--hh---HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 721 GRAGKLDDAFKLIIEMP-EEAD--AG---IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~-~~~~--~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
.+.+++.++++-.++.. .+|. .+ +...+-..++..|++-+|.+...++++++|+|..++.-.+.+|..-..+++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 45677777777666543 2444 12 333344445677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 037236 795 VRMMRQRMKE 804 (953)
Q Consensus 795 a~~~~~~m~~ 804 (953)
|+.-+++..+
T Consensus 360 AI~dye~A~e 369 (504)
T KOG0624|consen 360 AIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHh
Confidence 9988877765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-06 Score=88.65 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=114.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHhhc
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL---EHYACVVDMLGRA 723 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~lv~~l~~~ 723 (953)
..+...|++++|++++.+- .+.......+..+...+++|.|.+.++.|.+ +..|. ....+.+.+..-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCc
Confidence 4466789999999988642 3556677788899999999999999999954 45552 2223334433334
Q ss_pred CCHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc-hHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPEE--ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW-DDVRMMRQ 800 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~ 800 (953)
+.+.+|.-+|+++... +++.+++.+..+....|++++|+..++.+++.+|.++.+...++-+....|+. +.+.+...
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5799999999998653 67778888888889999999999999999999999999999999999999999 55667888
Q ss_pred HHHH
Q 037236 801 RMKE 804 (953)
Q Consensus 801 ~m~~ 804 (953)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-05 Score=87.28 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHhcCCcccHHHHhccCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh
Q 037236 414 VAYAKCGSEISAENVFHGMDSR--TV-SSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA 481 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 481 (953)
..+...|+.++|++.+..-... |. .........+.+.|+.++|..+|..+++.+ |+...|-..+..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 4456667777777777654332 32 334455566667777777777777777653 555555444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00016 Score=72.55 Aligned_cols=311 Identities=13% Similarity=0.137 Sum_probs=188.8
Q ss_pred HHHHHHhcCCcccHHHHhccCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 412 FVVAYAKCGSEISAENVFHGMDSRTVSSWNALI---CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 412 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|.+.++ ++||-..-. +
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-i---------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-I---------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH-H----------
Confidence 444555566777777777777666666666654 456667777777776666665 355532110 0
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc----------------cH--HHHHHHHHh
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV----------------SW--NTMIAGYSQ 550 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------------~~--~~li~~~~~ 550 (953)
+ -...+.|.|.++.|..=|+.+.+.++. .| ...+..+.-
T Consensus 111 -----------Q------------Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 -----------Q------------RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG 167 (504)
T ss_pred -----------H------------hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 0 012245566666666666655432221 01 112223333
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 037236 551 NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRV 630 (953)
Q Consensus 551 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 630 (953)
.|+...|++....+++. .| .|...+..-...|...|++..|+.=
T Consensus 168 ~GD~~~ai~~i~~llEi--~~----------------------------------Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI--QP----------------------------------WDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred CCchhhHHHHHHHHHhc--Cc----------------------------------chhHHHHHHHHHHHhcCcHHHHHHH
Confidence 45555555555555442 22 2555666666777777887777665
Q ss_pred hhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHH---------HHHHHhcCCHHHHH
Q 037236 631 FDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTF----VGI---------LMACNHAGLVENGL 694 (953)
Q Consensus 631 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~----~~l---------l~a~~~~g~~~~a~ 694 (953)
+.... ..+..+.--+-..+-..|+.+.++...++-++ +.||.... -.| .......+.|.++.
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55433 44555555566667777888888888888777 67765321 111 11223456677777
Q ss_pred HHHHHHHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 695 KYFSQMQKLHAVKPK-----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+-.+...+ ..|. ...+..+-.++...|++.||+....+... .|| +.++---..+|.....++.|+.-+++
T Consensus 290 e~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 290 EAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred HHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77666654 3444 22334455667788999999999887764 454 77888888899888999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCcc
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQK 809 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 809 (953)
+.+.+|+|..+-.-+ +.|.++.+...++..-|
T Consensus 367 A~e~n~sn~~~reGl----------e~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 367 ALELNESNTRAREGL----------ERAKRLKKQSGKRDYYK 398 (504)
T ss_pred HHhcCcccHHHHHHH----------HHHHHHHHHhccchHHH
Confidence 999999888654433 44555555444444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=79.64 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
+-.|.+.|+++........+..+. ..+...++.++++..+++.++ ..| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456777777776654443322211 012235666777777777777 355 666777777888888888888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHH-hhcCC--HHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDML-GRAGK--LDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l-~~~g~--~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
...|++..+ +.|+ ...+..+..++ .+.|+ .++|.+++++... .| +..++..+...+...|+++.|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887765 5555 66666666653 56666 4777777776654 23 556677777777777777777777777
Q ss_pred HhccCCCCcchH
Q 037236 768 LLELEPDKAENY 779 (953)
Q Consensus 768 ~~~l~p~~~~~~ 779 (953)
+++++|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 777777665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.2e-06 Score=79.93 Aligned_cols=145 Identities=11% Similarity=0.143 Sum_probs=115.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
+..|...|+++......+++.. |. . .+...++.+++...++...+ ..|+ ...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998887554433222 21 0 12236677888888877765 4565 889999999999999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSC-RTYGA--LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
++++|.+.+++... +.++.++..+..+. ...|+ .+.|..+++++++++|+++.++..|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998754 44678888888874 67776 599999999999999999999999999999999999999999
Q ss_pred HHHHHC
Q 037236 800 QRMKER 805 (953)
Q Consensus 800 ~~m~~~ 805 (953)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-06 Score=91.11 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=136.3
Q ss_pred CCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 502 GLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 502 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
++.|-......+...+.+.|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345556666778899999999999999999874 577889999999999999999888877 3777777777777
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 658 (953)
..-+..-++.|.++..+.... .-..+.....+.++++++.+.|+.-. .--..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 666666666666665544221 11111111223466666666666433 22344566666666666666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 659 IELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
.+.|..-.. ..|| ...|+.+-.+|.+.|+-.+|...+.+..+ ..- -+...|-...-...+.|.+++|++.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 666666665 4563 34466666666666666666666666644 221 112223333334455666666666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-06 Score=77.21 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 695 KYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+|++.++ +.|+ ++..+...+...|++++|.+.|+.... +.+...|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 5565 456678899999999999999998754 4578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|+++.++..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998877755
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-06 Score=76.44 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=99.9
Q ss_pred CCC-CC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 705 AVK-PK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 705 ~~~-p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
++. ++ .+..-.+...+...|++++|.++|+-... +-+..-|-.|...|+..|+++.|..++.++..++|+||.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 43 56666677788899999999999987654 457789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHH
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQI 849 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 849 (953)
.++..|...|+.+.|.+.++..... ++ .+|+..+|.++-+.....+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~---------------------~~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI---------------------CG--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---------------------hc--cChhHHHHHHHHHHHHHHh
Confidence 9999999999999999988766542 11 4677777777666655544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-07 Score=60.69 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=27.7
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 195 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 195 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-05 Score=72.86 Aligned_cols=412 Identities=12% Similarity=0.048 Sum_probs=207.7
Q ss_pred CCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC--ChhhHHH-HH
Q 037236 368 KPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR--TVSSWNA-LI 444 (953)
Q Consensus 368 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li 444 (953)
..-..-+.+++..+.+...+..+.+++..-.+.. +.+....+.|..+|-...++..|-..++++... ...-|.. -.
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 3333446666766777777777777776655543 124455666677777778888887777776542 2222221 23
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh--hccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA--CTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
..+.+.+.+..|+.+...|.+. |+...-..-+.+ .-..+++..++.+..+.-. +.+..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecccc
Confidence 4556677788888887777652 211111111111 1123444444444433321 1123333333344456666
Q ss_pred hhHHHHHHHhccc----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchHHHHHHHH
Q 037236 523 SSSARVLFDEMED----KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILSACSQLSALRLGKETHC 597 (953)
Q Consensus 523 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 597 (953)
.+.|.+-|+...+ ...+.||.-+ +..+.|+++.|++...++.+.|++-.+.. ....... .....+.....+|.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHH
Confidence 6666666665543 2334454433 33445666666666666666665421110 0000000 00000000000010
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 598 YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 598 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
.. -+..+|.-...+.+.|+.+.|.+.+..|++ -|++|...+.-.- ..|++.+..+-+.-++. +.|
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nP 307 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNP 307 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCC
Confidence 00 011223334456788999999999999984 3778776655332 23445555555555555 456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCChhHHHHHH
Q 037236 673 -DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV-KPKLEHYACVVDMLGR-AGKLDDAFKLIIEMPEEADAGIWSSLL 749 (953)
Q Consensus 673 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~~-~g~~~eA~~~~~~~~~~~~~~~~~~ll 749 (953)
-..||..++-.|++..-++-|..++.+--. .-. -.+...|+ |++.+.- .-..++|++-++.+...-....-..-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAI 385 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888887643210 000 01112222 3444443 345666666554432100000000001
Q ss_pred HH-HHhcCChh----HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 750 RS-CRTYGALK----MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 750 ~~-~~~~g~~~----~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.. -.++.+-+ .+..-++..+++- -......+++|....++.-+.+++..-.
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 11 01122211 2233344444432 1234566788888999988888766443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00024 Score=78.37 Aligned_cols=264 Identities=14% Similarity=0.061 Sum_probs=171.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHH-HHHhccccchHHHHHHHHHHHHcCCCCCccHHH---H
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV-QPCEISIVSI-LSACSQLSALRLGKETHCYALKAILTNDAFVAC---S 613 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 613 (953)
..|..+...+...|+.+++...+.+..+... .++......+ ...+...|+.+.+..++..+.+.... +...+. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 4566677777778888888777776655321 2232222222 22345678999999999988876433 333333 2
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD--K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
+.......|..+.+.+.+....+ | ....+..+...+...|++++|+..+++..+ ..| +...+..+..++...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCC
Confidence 22222335666677777665332 2 334455566788999999999999999999 466 45677888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC--ChhHHH----HHHHHHHhcCChhH
Q 037236 690 VENGLKYFSQMQKLHAVKPKL--EHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--DAGIWS----SLLRSCRTYGALKM 760 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--~~~~~~----~ll~~~~~~g~~~~ 760 (953)
+++|..+++...+.....|+. ..|..+...+...|++++|.+.+++... .| ...... .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887643333342 3456788999999999999999998642 23 212111 33444555665555
Q ss_pred HHHH---HHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKV---AKTLLELEPD--KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.+. ......-.|. ....-...+..+...|++++|.++.+.++..
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5444 2222111122 1222246777888999999999999888663
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=86.42 Aligned_cols=239 Identities=13% Similarity=0.172 Sum_probs=147.4
Q ss_pred HHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHhccccchHHH
Q 037236 517 YMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-SIVSILSACSQLSALRLG 592 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a 592 (953)
+.+.|++.+|.-.|+...+. +...|--|....+.+++-..|+..+++.++. .|+.. .+..|--.+...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 45667777777777776554 3457777777777888777788777777764 45433 334444455666666666
Q ss_pred HHHHHHHHHcCCC-----C---CccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 593 KETHCYALKAILT-----N---DAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 593 ~~~~~~~~~~~~~-----~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
...++..++..+. + +...-+. ..+.....+.+..++|-++. ..|+.....|.-.|--.|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6665544332211 0 0000000 00001111233344444432 246666677777777788888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..|+.++. ++| |...|+-|..++....+.++|+..|.++++ ++|+ +.....|.-.|...|.++||.+.|-+..
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888877 677 667788888888888888888888887765 7777 6666667777777888887776653321
Q ss_pred C------------CCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 738 E------------EADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 738 ~------------~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
. .++..+|.+|=.+....++.|.+..+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 12346888888777777777655444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0048 Score=66.34 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHc-CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 554 PVEAIVLFRRMFSI-GVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN-DAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 554 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
.+...+.+++.... ...| ..+|...++..-+..-++.|+.+|..+.+.+..+ +++++++++.-|+ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44555556555543 2333 3556667777777777777777777777766655 7777777777666 46677777777
Q ss_pred hhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 037236 632 DRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHA- 705 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 705 (953)
+--. ..++.--+..+.-+...|+-..|..+|++.+..++.||. ..|..+|.-=+.-|++.-+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 7543 223333445566666677777777777777776555543 5677777777777777777777776655554
Q ss_pred -CCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 706 -VKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 706 -~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
..|...+-..+++.|+=.++...-..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHH
Confidence 44444555556666666665444333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-05 Score=80.02 Aligned_cols=182 Identities=11% Similarity=0.110 Sum_probs=139.1
Q ss_pred HHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 615 IDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG-YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
-..+.+.++.++|..+.+++. +.+..+|+.....+...| ++++++..++++++. .| +..+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 334555678889999988876 345667887777777777 679999999999984 56 55667766666667776
Q ss_pred H--HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc---CCh---
Q 037236 690 V--ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---GAL--- 758 (953)
Q Consensus 690 ~--~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---g~~--- 758 (953)
. +++..+++.+++ +.|. ...|+....++.+.|++++|++.++++.. ..|..+|+......... |..
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3 678888888876 5665 67788888889999999999999999864 45788999888777654 222
Q ss_pred -hHHHHHHHHHhccCCCCcchHHHHHHHHHhc----CCchHHHHHHHH
Q 037236 759 -KMGEKVAKTLLELEPDKAENYVLVSNIYAGS----EKWDDVRMMRQR 801 (953)
Q Consensus 759 -~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~ 801 (953)
+......+++++++|+|.+++..++.+|... ++..+|......
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 4677778899999999999999999999883 344556555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-05 Score=87.63 Aligned_cols=197 Identities=14% Similarity=0.169 Sum_probs=166.4
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 556777778888889999999999998762 24568999999999999889999999999883 22345588
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---ChhHHHHHHHHHHh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA---DAGIWSSLLRSCRT 754 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~---~~~~~~~ll~~~~~ 754 (953)
.|+..|...+.+++|.++++.|.++++ -....|...++.+.+...-++|.++++++.. -| -.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999887 4467899999999999999999999987653 23 34455555666688
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+||.|.|+.+++-++.-.|...-.|..+.+.-.+.|..+.++.+++..-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998877655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.1e-05 Score=89.24 Aligned_cols=164 Identities=11% Similarity=0.075 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILM 682 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~ 682 (953)
+...+-....+.|.+..+.+-+-+.. ..++..+-.|.....+.|+.++|+.+++...+ +.|| ...+..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~ 128 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 33334444445555554444433332 24577777888888888999999999998888 6885 455777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~ 759 (953)
++.+.+++++|...+++... ..|+ ..+...+..++.+.|++++|.++|++... .|+ +.+|-++..++...|+.+
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 88889999999988888765 5676 67777888888889999999999888764 343 678888888888889999
Q ss_pred HHHHHHHHHhccCCCCcch
Q 037236 760 MGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~ 778 (953)
.|..+++++++...+-...
T Consensus 206 ~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHhhCcchHH
Confidence 9999999988876544444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-07 Score=58.62 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=24.3
Q ss_pred CCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 298 GLTRELMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 298 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.7e-05 Score=73.80 Aligned_cols=147 Identities=19% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++... ..| |..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChh
Confidence 33333444444444444322 22333444455555555555555555555554 233 4455555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+|..-|.+..+ +.|+ +..++.|.-.|.-.|+++.|..++.+... . .|..+-.+|.-+....|+++.|+.+..+
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 55555555544 2222 23344444445555555555555444322 1 2344444444444555555555444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00022 Score=75.81 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACV 716 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 716 (953)
...+-...-.+...|++++|+..++.++.. .|| ..-.......+...++.++|.+.++.++. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566778899999999998884 674 44455566778899999999999998876 5666 4556667
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
..+|.+.|+..+|...++.... +.|+..|..|..+|...|+..++..+ .+..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 8889999999999999887764 45788999999999999987777665 4557888999999
Q ss_pred HHHHHHHHHHCC
Q 037236 795 VRMMRQRMKERG 806 (953)
Q Consensus 795 a~~~~~~m~~~~ 806 (953)
|....+..+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999887777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=73.18 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
..|+ ......++..+...|++++|.+.++.... +.++..|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 34455566666667777777776666532 33566777777777778888888888888888888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887776655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.7e-05 Score=87.01 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=116.5
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 037236 604 LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVG 679 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ 679 (953)
...++..+-.|.......|.+++|..+++... +.+...+..++..+.+.+++++|+..+++... ..|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 34467788888999999999999999999887 34566788899999999999999999999999 5785 455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
+..++.+.|++++|..+|+++.. -.|+ ...+..+...+-+.|+.++|...|++... .|.+.-++.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 77888899999999999999975 3455 77888899999999999999999998754 355555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.011 Score=74.28 Aligned_cols=365 Identities=10% Similarity=-0.047 Sum_probs=184.6
Q ss_pred HHHhhccCChHHHHHHhccCCCCCeec--HHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCc
Q 037236 207 IAMYGKCAFVEEMVKLFEVMPERNLVS--WNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNV 284 (953)
Q Consensus 207 i~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~ 284 (953)
...|...|++.+|..........+... .......+...|++..+...+..+ .......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l--p~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL--PWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC--CHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344566677777776665555432211 111122345577787777777766 2221222222222333444567888
Q ss_pred hHHHHHHHHHHHhCCC------CC--chHHHHHHHhhHhcCChhHHHHHHhcCC----CCCc----ccHHHHHHHHHcCC
Q 037236 285 DLGILVHGLAVKLGLT------RE--LMVNNALVDMYAKCGFLSEAQILFDKNN----NKNV----VSWNTIIGAFSMAG 348 (953)
Q Consensus 285 ~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~----~~~~~li~~~~~~g 348 (953)
+++...+....+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 8888888776543111 11 1122223345567889999888887532 2221 23455666677889
Q ss_pred ChhHHHHHHHHHHhccCCC-CCc--hhhHHHHHHHhccccchHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHh
Q 037236 349 DVCGTFDLLRKMQMKEEEM-KPN--EVTVLNVLTSCSEKSELLSLKELHGYSLRH----GFDN---DELVANAFVVAYAK 418 (953)
Q Consensus 349 ~~~~A~~l~~~m~~~g~~~-~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~li~~y~~ 418 (953)
++++|...+.+........ .+. ..++..+-..+...|+++.|...+...+.. +... ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 9999998888876432101 111 123333444566678888887776665442 2111 12223344445555
Q ss_pred cCCcccHHHHhccCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-cchHHHHHHhhccccccc
Q 037236 419 CGSEISAENVFHGMDS------R--TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPD-LFSIGSLILACTHLKSLH 489 (953)
Q Consensus 419 ~g~~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 489 (953)
.|++++|...+.+... + ....+..+...+...|++++|.+.+.+.....-... ...+.
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~------------- 652 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI------------- 652 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh-------------
Confidence 6777666666554321 0 112233344455566666666666665543110000 00000
Q ss_pred hhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc-------cHHHHHHHHHhcCChhHHHHHHH
Q 037236 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV-------SWNTMIAGYSQNKLPVEAIVLFR 562 (953)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~ 562 (953)
.......+..+...|+.+.|...+.....+... .+..+..++...|++++|...++
T Consensus 653 -----------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 653 -----------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000001122334456666666666554432111 12334455666677777777776
Q ss_pred HHHHc----CCCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 563 RMFSI----GVQPCE-ISIVSILSACSQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 563 ~m~~~----g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 603 (953)
+.... |..++. .+...+-.++...|+.+.|...+..+.+..
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 65542 222211 233334445566777777777776666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=85.17 Aligned_cols=237 Identities=16% Similarity=0.090 Sum_probs=160.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHH
Q 037236 401 GFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLIL 480 (953)
Q Consensus 401 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 480 (953)
+++|-...-..+...+.++|-...|..+|++ +..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 4566666777888899999999999999987 45688899999999999999888888776 3566666665555
Q ss_pred hhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHH
Q 037236 481 ACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVL 560 (953)
Q Consensus 481 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 560 (953)
...+..- +++|.++++....+--..|+.+ ..++++++++.+.
T Consensus 466 v~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSL-----------------------------------YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 4333333 3444444444332211111111 1235667777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-
Q 037236 561 FRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK- 637 (953)
Q Consensus 561 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~- 637 (953)
|+.-.+. .| ....+|-.+..++.++++++.|.+.|.... +|
T Consensus 508 le~sl~~--np----------------------------------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 508 LERSLEI--NP----------------------------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHhhc--Cc----------------------------------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 7665543 12 134455666667777888888888887665 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
+..+||++-.+|.+.|+-.+|...+.+..+-+.. +...|..........|.+++|++.+.++........|..+...++
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 5678999999999999999999999999886522 344455556666788999999999988866544444555555554
Q ss_pred HH
Q 037236 718 DM 719 (953)
Q Consensus 718 ~~ 719 (953)
..
T Consensus 631 ~~ 632 (777)
T KOG1128|consen 631 RT 632 (777)
T ss_pred HH
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-05 Score=76.94 Aligned_cols=181 Identities=11% Similarity=0.021 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC--CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHH---HHH
Q 037236 572 CEISIVSILSACSQLSALRLGKETHCYALKAILTN--DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--K-DVT---SWN 643 (953)
Q Consensus 572 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~~ 643 (953)
....+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+ | +.. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34556666778889999999999999988765431 124667789999999999999999998862 2 222 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 644 AIIGGHGIH--------GYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 644 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
.+..++... |+.++|++.|+++.. ..|+.. ....+..... ... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHH
Confidence 666666654 789999999999998 467542 2222211100 000 00 01122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.+.+.|.+.|++++|...+++... .| .+..|..++.++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677888888888887776542 12 245777888888888888888887777665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.2e-05 Score=73.10 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=69.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
|..+...++....+.|++..|...|.+.. ++|...|+.+.-+|.+.|+.++|..-|.+.++ +.| +....+.+..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHH
Confidence 33444445555556666666666666554 34555666666666666666666666666665 445 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
.+.-.|+.+.|..++..... ..+ +...-..|+-+.+..|++++|.++...
T Consensus 177 s~~L~gd~~~A~~lll~a~l---~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYL---SPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666666655532 111 234444555555666666666665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00015 Score=85.27 Aligned_cols=232 Identities=11% Similarity=0.137 Sum_probs=147.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-HhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS-ACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
+...|..|+..|...+++++|.++.++..+. .|+...+-.++. .+.+.+..+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4456777888888888888888888766554 566554433332 22222332222222 223
Q ss_pred HHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
+...+..++.-...+...|. ..+-..+..+..+|.+.|+.++|..+++++++ +.| |....+.+...++.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence 33333333322222333332 12334667788889999999999999999998 567 677788888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------------------CCChhHHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE----------------------EADAGIWSSLLR 750 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------------------~~~~~~~~~ll~ 750 (953)
|.+++..++.. |...+++.++.++++++.. ..-..+|.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99988887653 2333344444444433322 122334455556
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
-|...++++.+..+++.+++.+|.|..+..-++..|. +++.+-..+-+.++-.|+.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~ 287 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIG 287 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccc
Confidence 7788889999999999999999999999999999888 5555544444445544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00021 Score=75.93 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=132.6
Q ss_pred CCHHHHHHHhhhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 622 GCLEQSRRVFDRLK------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 622 g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
.++.++...-+.++ .++.......+.+.........+..++.+ ... | -........-.+...|.+++|+
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~---~~~~aa~YG~A~~~~~~~~~d~A~ 326 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAK-RSK---RGGLAAQYGRALQTYLAGQYDEAL 326 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHH-HhC---ccchHHHHHHHHHHHHhcccchHH
Confidence 34556666666665 34556666666654443333333333322 221 2 2233444555667889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
..++.+++ -.|+ +.......+.+.+.++.++|.+.++++.. .|+ ...|-++..++.+.|+..+|+..++....-
T Consensus 327 ~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 327 KLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99999876 4566 66667779999999999999999998865 565 788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 772 EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 772 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|+|+..|.+|+..|..+|+-.+|...+.++-
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999887664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00021 Score=70.40 Aligned_cols=270 Identities=14% Similarity=0.089 Sum_probs=137.5
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhcccC--CcccHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh-
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMEDK--SLVSWNT-MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC- 583 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~- 583 (953)
.-.+.|..+|....++..|-..++++... ...-|.. -...+.+.+.+.+|+.+...|... |+...-..-|.+.
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 33445555666666677777777666532 1111211 123445567777777777766542 2211111111110
Q ss_pred -ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC----CCHHHHHHHHHHHHhcCChHHH
Q 037236 584 -SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD----KDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 584 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 658 (953)
...+++..++.+.++... +.+..+.+.......+.|++++|.+-|....+ .....||.- -+.-+.|++..|
T Consensus 122 kYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasA 197 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASA 197 (459)
T ss_pred hcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHH
Confidence 112223233332222211 11233333333344455555555555554431 122333322 223344555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH-------HHHHhhcCCHHHHHH
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV-------VDMLGRAGKLDDAFK 731 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-------v~~l~~~g~~~eA~~ 731 (953)
+++..+++++|++-.+.. .-|..-++... +.+ | .|-.-|-+.+ ...+.+.|+++.|.+
T Consensus 198 Lk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHHHHHhhhhcCCcc---------CccceeccCch-hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 555555555554321100 00000000000 000 0 0111122333 344678899999999
Q ss_pred HHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 732 LIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 732 ~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
-+..||- +.|+++..++.-. -..+++-.+.+-+.-+++++|--+.++-.+.-+|.+..-++-|..+..
T Consensus 263 aLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 9999974 3578887766422 345667777788888899999888888888889999999999888764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.9e-05 Score=68.86 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=88.9
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
+.|++.++ ..| +......+...+...|++++|.+.|+.+.. ..|+ ...+..+...|.+.|++++|.+.+++..
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666 466 345566777788888999999999988865 3343 6778888888989999999998888764
Q ss_pred C--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 738 E--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 738 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
. +.+...|..+...+...|+.+.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 2 4467788888888899999999999999999999987763
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00073 Score=80.05 Aligned_cols=199 Identities=16% Similarity=0.147 Sum_probs=134.2
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHc-CCC---CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-CC-HHHHHHHH
Q 037236 573 EISIVSILSACSQLSALRLGKETHCYALKA-ILT---NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-KD-VTSWNAII 646 (953)
Q Consensus 573 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~li 646 (953)
++.|...+.-..+++..+.|+++.+.+.+. ++. --..+|.+++++-.--|.-+...++|++..+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345566666666677777777776666553 221 1234666777766666777777788887763 23 34567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
.-|.+.+.+++|.++|++|.+. +.-....|..++..+.+...-+.|..++.++.+...-.-.++...-.+++-.+.|+-
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7788888888888888888775 344556677777888887777788888877765321111234445556667778888
Q ss_pred HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 727 DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 727 ~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
+.+..+|+.... +...-.|+.++..-.+||+.+.++.++++++++.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888876654 2355678888888888888888888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0002 Score=77.28 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.+.. .| |...+......|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456667777899999999999999777666777888888899999999999999974 56 666666667778899
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 688 GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
++++.|+.+.+++++ +.|+ ..+|..|+.+|.+.|++++|+-.++.+|.-
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999976 6787 779999999999999999999999999863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00091 Score=64.91 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=117.2
Q ss_pred HHHhcCCHHHHHHHhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 037236 617 MYAKCGCLEQSRRVFDRLKDK-----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV 690 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~ 690 (953)
+..-+|+.+.|...++.+..+ -+.-..+| -+-..|++++|+++++..++. .| |.+++.--+...-..|+.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCc
Confidence 334467788888887776522 22222222 255678999999999999886 46 778887777777778888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcC---ChhHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYG---ALKMGEKVA 765 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g---~~~~a~~~~ 765 (953)
-+|++-+....+. +.-|.+.|.-+.++|...|+++.|.-.++++.. .| ++..+..+...+...| |++.+.+.+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888877664 445678899999999999999999999988753 44 5667777777766555 889999999
Q ss_pred HHHhccCCCCcchH
Q 037236 766 KTLLELEPDKAENY 779 (953)
Q Consensus 766 ~~~~~l~p~~~~~~ 779 (953)
++++++.|.+....
T Consensus 215 ~~alkl~~~~~ral 228 (289)
T KOG3060|consen 215 ERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHhChHhHHHH
Confidence 99999999666544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=77.34 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRT 754 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~ 754 (953)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++... .| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345666677788888888888888652 354 445577778788888888888877654 33 56677777777889
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.++.+.|..+++++.++.|++..++..|+.+|...|+|++|+...+.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999887664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=53.03 Aligned_cols=35 Identities=34% Similarity=0.588 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE 573 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 573 (953)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=52.95 Aligned_cols=34 Identities=41% Similarity=0.679 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0091 Score=58.67 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN----HAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~----~~g~ 689 (953)
-...|.+.|++++|.+.......-+....+. ..+.+..+.+-|.+.+++|.+ + -+..|.+-|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchh
Confidence 3456677777777777776633323333332 234555667777777777766 2 24455555555553 2345
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC-ChhHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG-ALKMGEKVAK 766 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g-~~~~a~~~~~ 766 (953)
+.+|.-+|++|.++ ..|+..+.+.+..+....|+++||..+++.... ..++.+..+++-.-...| +.+...+...
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 66777777777543 345555555555555566666666666655543 223444433333333333 3344455555
Q ss_pred HHhccCCCCc
Q 037236 767 TLLELEPDKA 776 (953)
Q Consensus 767 ~~~~l~p~~~ 776 (953)
++...+|+.+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 5555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=61.77 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYAC 715 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ 715 (953)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+...... ..|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 34444444 367777777777777774 3322 334445566777788888888888776532 2222 123344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPEE-ADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
|..++...|++++|+..++..+.. ..+..+..++..+...|+.+.|..+++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566777777777777777664422 22334444444455555555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=72.51 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhH-HHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCCh
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPKLEH-YACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~ 758 (953)
+-..+.+++.+|+..|..+++ +.|+-.+ |..=..+|.+.|.++.|.+=.+.... .|. ...|..|.-++...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 456788999999999999876 7787444 44558889999999999988877654 443 56889999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
++|+++|+++++++|+|...-..|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999888544333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00083 Score=62.71 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCh----hHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE-ADA----GIWSSLL 749 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~~~----~~~~~ll 749 (953)
.|..++.+. ..++.+.+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+..... ||. ..+-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 488899999999999886554432 334445678889999999999999987653 443 3556677
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
..+...|+++.|...++. ..-.|-.+..+.+++++|...|++++|...++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778899999999999977 344556778889999999999999999998764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=76.65 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~ 757 (953)
...+...|++++|+.+|+++++ +.|+ ...|..+..+|.+.|++++|+..++++.. +.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4455566677777777766655 3444 45555566666666666666666655532 2244555566666666666
Q ss_pred hhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 758 LKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
++.|...++++++++|+++.....+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666666666666666666655544433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.8e-05 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888777
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.2 Score=57.93 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=82.5
Q ss_pred HhcCChhhHHHHhhcCCCCCc-hhHHHHHHHH--hcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHh
Q 037236 109 SLCGFPLDSRRVFDSLKTRNL-FQWNALVSGF--TKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGS 185 (953)
Q Consensus 109 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 185 (953)
...+++..|.+-.+++-.+.+ ..|...+.++ .+.|..++|..+++.... .+.. |..|...+-..+...++.+++.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 456777778777777643322 2455555554 478888888888777654 2222 6667777777788888888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhccCChH----HHHHHhccCCCCCeecHHH
Q 037236 186 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE----EMVKLFEVMPERNLVSWNS 236 (953)
Q Consensus 186 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~ 236 (953)
.++++..+.. |+......+..+|+|-+++. .|.+++...|++--.-|+.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 8888887654 44666677777777776654 4666777666655555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=7e-05 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQP 571 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 571 (953)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=64.29 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYA 714 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 714 (953)
....+..+...+...|++++|+..|++.++....|+ ...+..+..++.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677788888888999999999999887533332 35677888888899999999999888876 4454 55666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
.+..+|...|+...|..-++... ..++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 77777877777666554333211 12567888999999999877 56666666666553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00064 Score=61.01 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHH
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRS 751 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~ 751 (953)
..+...+...|++++|.+.|+.+.+.++-.|. ...+..+..++.+.|++++|.+.++.... .|+ +.+|..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444444455555555555555432211111 22333344555555555555555544322 122 3445556666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 6666777777777777777777665433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0026 Score=61.86 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=130.7
Q ss_pred cCCHHHHHHHhhhcC--------CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 037236 621 CGCLEQSRRVFDRLK--------DKDVT-SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLV 690 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~ 690 (953)
..+.++..+++.++. .++.. .|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 457888888888776 12332 3445566667789999999999999886 3 6433 222233345678999
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP--EEADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
++|++++++.+++ .|+ ...|--=+-++-..|+--+|++-+.... +..|...|.-|...|...|+++.|.-++|+
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999774 354 5556666667777888889988877664 367999999999999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
++=+.|-++..+..|+.++...|--+.-
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999888764443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=69.20 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=84.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA 723 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~ 723 (953)
..-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 5557788999999999999999 788 778888999999999999999999888876 7888 88999999999999
Q ss_pred CCHHHHHHHHHhCCC-CCChhHHHH
Q 037236 724 GKLDDAFKLIIEMPE-EADAGIWSS 747 (953)
Q Consensus 724 g~~~eA~~~~~~~~~-~~~~~~~~~ 747 (953)
|++++|++.|++... .|+-.+|.+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999998764 676555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=60.86 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=83.2
Q ss_pred cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 704 HAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 704 ~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.|+.++ .+..-....-+...|++++|..+|+-+.. .-++.-|..|...|...++++.|...+..+..++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 345554 34444455556778999999988876543 456778999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..|...|+.+.|...+....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999998876654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=73.42 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 037236 635 KDKDVTSWNAIIGGHGI--HG---YGKEAIELFEKMLALGHKPDT-FTFVGILMA 683 (953)
Q Consensus 635 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a 683 (953)
...|...|...+.+... .+ +..+|..+|++.++ ..|+. ..+..+..+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~ 385 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALA 385 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 35677788888777543 22 36789999999999 68854 445444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00042 Score=58.89 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
+..+...+.+.|++++|.+.+++... +.+..+|..+...+...|+++.|...++.+++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455666677777777777766543 2334566667777777788888888888888888888888888888888888
Q ss_pred CchHHHHHHHHHH
Q 037236 791 KWDDVRMMRQRMK 803 (953)
Q Consensus 791 ~~~~a~~~~~~m~ 803 (953)
++++|....+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 8888887766554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0032 Score=60.59 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
...|..++..+...|++++|+..|++.+.....| ...++..+...+.+.|++++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 4567778888888999999999999998753233 234788888999999999999999998875 4455 555666
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 VVDMLG-------RAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 lv~~l~-------~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+..++. +.|++++|+..+ +.|...++++++.+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 666666 555555554443 356677888888888544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00075 Score=73.37 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR 722 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~ 722 (953)
....+...|++++|+++|+++++ ..| +...|..+..+|...|++++|+..++++++ +.|+ ...|..+..+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 35567788999999999999999 567 677888899999999999999999999976 5665 7788889999999
Q ss_pred cCCHHHHHHHHHhCCC-CCChhHHHHHHHHH
Q 037236 723 AGKLDDAFKLIIEMPE-EADAGIWSSLLRSC 752 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~ 752 (953)
.|++++|+..+++... .|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988754 45544444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00083 Score=60.27 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLV 782 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 782 (953)
..+..++..+.+.|++++|.+.++.+.. .|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778889999999999999988754 343 3467778888999999999999999999999885 5678999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHC
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.+|...|++++|.+.++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999998888764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=57.08 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE-KWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 804 (953)
++.+|..++..+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999997766543
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.22 Score=54.14 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.+|-.+++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+.+|-.| .--.+.++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 357777777667667889999999999988888 5555666666554 6788999999998888776555 44466788
Q ss_pred HHhhcCCHHHHHHHHHhCCCC---C--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----chHHHHHHHHHhc
Q 037236 719 MLGRAGKLDDAFKLIIEMPEE---A--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA----ENYVLVSNIYAGS 789 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~ 789 (953)
.+.+.++-..|..+|++.... | ...+|..++.--..-||+..+.++-++....-|.+. ..-.++.+-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 899999999999999987643 2 347999999999999999999999988887766221 1234566677777
Q ss_pred CCchHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRM 802 (953)
Q Consensus 790 g~~~~a~~~~~~m 802 (953)
+....-..-.+.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 7776665555555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0052 Score=72.72 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=142.7
Q ss_pred CCCCC-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHH
Q 037236 568 GVQPC-EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAII 646 (953)
Q Consensus 568 g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 646 (953)
+..|+ ...+..++..+...+.++++.++.....+.... ....|-.++..|...++.++|..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 34443 345666777777777888887777755554332 334444444466666665555443 233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK 725 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~ 725 (953)
.......++....-+...|.+. .-+...+..+..+|.+.|+.+++...++++++ +.|+ +...+.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-h
Confidence 4444444454444444455552 22456888899999999999999999999987 4566 88899999999999 9
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH--------------------HHHHH
Q 037236 726 LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV--------------------LVSNI 785 (953)
Q Consensus 726 ~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~--------------------~l~~~ 785 (953)
+++|++++.+.. ..+...+++..+....+++++.+|++..... -|-+-
T Consensus 165 L~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 999999998753 2244555777788888888888887665532 23356
Q ss_pred HHhcCCchHHHHHHHHHHHCCCc
Q 037236 786 YAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 786 y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
|.+.++|+++..+++.+-+...+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 88889999999999998775444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00079 Score=67.84 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc-C--ChhHHHHHHHHHhccCCCCcchHH
Q 037236 707 KPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY-G--ALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 707 ~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
+|+ .+.|..|...|.+.|++++|..-|.+... .+++.++..+..++... | ...++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 454 77788888888888888888877776543 45677777777775433 2 568899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+|+-.+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.41 Score=55.44 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=83.4
Q ss_pred ccCChHHHHHHhccCCCC-CeecHHHHHHHH--HcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHH
Q 037236 212 KCAFVEEMVKLFEVMPER-NLVSWNSIICGS--SENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 288 (953)
..+++..|....+++..+ ....|..++.++ .+.|+.++|..+++.. ...+.. |..|...+-.++...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~--~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL--YGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh--ccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 457777888777776532 223466666655 4688888888888887 344333 7778877777888888888888
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhH----HHHHHhcCCCCCcccHHHH
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSE----AQILFDKNNNKNVVSWNTI 340 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~f~~~~~~d~~~~~~l 340 (953)
.+++...+. .|+......+..+|.+.+++.+ |.+++...+++--.-|+.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 888887765 3556666677777777766543 5566665555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=67.09 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=115.6
Q ss_pred HHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH----
Q 037236 640 TSWNAII-GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY---- 713 (953)
Q Consensus 640 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---- 713 (953)
.+|..+- .++...|++++|...--..++ ..+ +......-..++-..++.+.|...|++.++ +.|+-..-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHh
Confidence 4444432 356678888888888777766 344 333333333345567788889998887754 45542211
Q ss_pred ---------HHHHHHHhhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 714 ---------ACVVDMLGRAGKLDDAFKLIIEMPE------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 714 ---------~~lv~~l~~~g~~~eA~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.-=.....+.|++.+|.+.+.+... +|++..|.....+...+|+.++|....+.+++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1122345678999999999987753 3556667777777888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 779 YVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|..-++.|...++|++|.+-++..-+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996655433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=46.62 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV 569 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 569 (953)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00017 Score=46.63 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=57.29 Aligned_cols=95 Identities=7% Similarity=-0.039 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHY 713 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 713 (953)
+.+....-++..-+...|++++|..+|+-... +.| +..-|..|..+|-..|++++|+..|..... +.|+ +..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHH
Confidence 33444444455555666667777776666666 456 445566666666666677777766666644 4444 5555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 037236 714 ACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 714 ~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
-.+..+|...|+.++|++-|+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666666666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=9.9e-05 Score=48.54 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=30.6
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 796 (953)
++++++++|+|+.+|..|+++|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00012 Score=60.98 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
..|-.+...+...|+++.|..++++ .+.+|.++....+++..|.+.|++++|++++++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444455555555555555555555 555666666666677777777777777776653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.22 Score=52.85 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLV 690 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~ 690 (953)
.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..|++++-.++... +-.++-|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888898888888888888888899999999998876654332 12347777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRS 751 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~ 751 (953)
.+|..+...+ | +.--+.+|.++|.+.+|.+..-+ ..|...+..+...
T Consensus 254 ~eA~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~---~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 254 KEASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFK---EKDIDLLKQILKR 300 (319)
T ss_pred HHHHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 8888887653 1 24467888889998888776544 2344444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00048 Score=53.95 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=44.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888888888888888888887776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.031 Score=55.09 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=70.0
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDK-DVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
+..+.|..+++-|.+.+++|.+- +-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+..+.++...|+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 44455666777777777777643 33455555555433 34577777777777664 56777777777777777788
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
+++|..+++....+..- ++++...++-.-...|.-.++
T Consensus 223 ~eeAe~lL~eaL~kd~~--dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK--DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhCCChHH
Confidence 88888777777654322 245555555554555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0065 Score=63.67 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA-CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 468888888888888999999999998632 2245556555555 33467777799999999887654 4567888889
Q ss_pred HHhhcCCHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 719 MLGRAGKLDDAFKLIIEMPEE-AD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+.+.|+.+.|..+|++.... |. ..+|...+.--..+|+++....+.+++.+.-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987652 33 3599999999999999999999999999998875543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.32 Score=50.70 Aligned_cols=265 Identities=15% Similarity=0.141 Sum_probs=169.5
Q ss_pred cCChhHHHHHHHhcc---cCCcccHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccccchHHH
Q 037236 520 CEKSSSARVLFDEME---DKSLVSWNTMIAGY--SQNKLPVEAIVLFRRMFSIGVQPCE--ISIVSILSACSQLSALRLG 592 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a 592 (953)
.|+-..|++.-.+.. ..|....-.++.+- .-.|+++.|.+-|+.|... |.. .-+..+.-.-.+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666555433 23444444444432 3368888888888888752 221 1223333344567888888
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHH--HHHHHHHHHH---hcCChHHHHHHH
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVT--SWNAIIGGHG---IHGYGKEAIELF 662 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~ 662 (953)
+++-+........ -.-...+.++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8777666554322 23456778888999999999999998654 44443 1122222211 123566676666
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH------Hh
Q 037236 663 EKMLALGHKPDTFT-FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI------IE 735 (953)
Q Consensus 663 ~~m~~~g~~P~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~------~~ 735 (953)
.+..+ +.||-+. -..-..++.+.|++.++-.+++.+-+ ..|.+..+. ...+.|.|+. +++-+ ++
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHh
Confidence 66666 6787644 44456788999999999999999865 566655443 2234555543 22222 23
Q ss_pred CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc-CCchHHHHHH
Q 037236 736 MPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS-EKWDDVRMMR 799 (953)
Q Consensus 736 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 799 (953)
|. +.+....-++..+...-|++-.|....+.+...+| ..+.|.+|+++-... |+-.++....
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHH
Confidence 32 34566667777788889999999999999999999 566888999987766 8777665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=54.14 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM 719 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 719 (953)
|..+...+...|++++|+..|+++.+. .| +...+..+...+...|++++|.++|+...+ ..|. ...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence 445556666667777777777766663 34 334555566666666666666666666543 2222 2344444445
Q ss_pred HhhcCCHHHHHHHHHh
Q 037236 720 LGRAGKLDDAFKLIIE 735 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~ 735 (953)
+...|++++|.+.+++
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 5555555555444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0031 Score=60.86 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
.+..+...|.+.|++++|.+.+++... .|+ ...|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555555555555554431 111 356777777788888888888888888888898888888888888
Q ss_pred HhcCC
Q 037236 787 AGSEK 791 (953)
Q Consensus 787 ~~~g~ 791 (953)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=62.41 Aligned_cols=91 Identities=12% Similarity=-0.052 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
...|..++..+...|++++|+..+++... .| .+.+|..+...+...|+.+.|...++++++++|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34455556666666777777777665531 12 23478888888899999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHHHHH
Q 037236 785 IYA-------GSEKWDDVRMMRQ 800 (953)
Q Consensus 785 ~y~-------~~g~~~~a~~~~~ 800 (953)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 988 7888886666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00065 Score=53.76 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=38.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++.+.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888888888888888888888877765544
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00056 Score=53.54 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+...+.+.|++++|++.+++... .| ++.+|..+...+...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788888888888887754 34 567888888889999999999999999999999875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.021 Score=55.78 Aligned_cols=229 Identities=10% Similarity=-0.055 Sum_probs=154.4
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHh-ccCCC--hhHHHHHHHHHhhhcCCCC
Q 037236 21 TNNASTEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQAC-GHEKD--IEIGKRVHELISASTQFSN 96 (953)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~ 96 (953)
+..+......|...+..+.+.. ..++|...+...-. +.|+-. |...-..+ .+.|+ +-..+-+|..+.+..|+
T Consensus 62 ~~~t~~~lq~wT~r~~~l~kLR-~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-- 137 (366)
T KOG2796|consen 62 TSHTTDSLQLWTVRLALLVKLR-LFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-- 137 (366)
T ss_pred eccchhHHHHHHHHHHHHHHHh-hhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC--
Confidence 3344455667888888899888 88888887777665 444421 11111111 23444 23445677777733342
Q ss_pred CchhhhHHHHHHHhcCChhhHHHHhhcCCCC--Cc--------hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc
Q 037236 97 DFIINTRLITMYSLCGFPLDSRRVFDSLKTR--NL--------FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNF 166 (953)
Q Consensus 97 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 166 (953)
-++.|+..|.-...+++-...|+.=..| .+ ..-+.++..+.-.|.+.-.+.++.+.++ ...+.++.
T Consensus 138 ---pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~ 213 (366)
T KOG2796|consen 138 ---PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQ 213 (366)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHH
Confidence 3677888877777777777777653332 22 2346677777778888888999999988 66666777
Q ss_pred cHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCCh-----hHHHHHHHHhhccCChHHHHHHhccCCCC---CeecHHHHH
Q 037236 167 TFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDV-----FVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSII 238 (953)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li 238 (953)
....+.+.-.+.||.+.|...++.+.+..-..|. -+....-..|.-.+++..|...|++++.. |++.-|.-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 7888888888999999999999988776433333 33444444566678899999999988864 445555444
Q ss_pred HHHHcCCCchHHHHHHHHh
Q 037236 239 CGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 239 ~~~~~~g~~~~A~~l~~~m 257 (953)
-+..-.|+..+|++..+.|
T Consensus 294 LcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455578899999999998
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=52.78 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888887776654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.045 Score=57.61 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhc
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIH-GYGKEAIELFEKMLAL----GHKP--DTFTFVGILMACNHA 687 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~P--~~~t~~~ll~a~~~~ 687 (953)
++.|.+.|++..|-+++.+ +...|... |++++|++.|++..+. | .| -..++..+...+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4556666666666555443 45556666 7777777777776552 2 22 123455666677777
Q ss_pred CCHHHHHHHHHHHHHhcCCCC----Ch-hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC------ChhHHHHHHHHHHhc
Q 037236 688 GLVENGLKYFSQMQKLHAVKP----KL-EHYACVVDMLGRAGKLDDAFKLIIEMPE-EA------DAGIWSSLLRSCRTY 755 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p----~~-~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~------~~~~~~~ll~~~~~~ 755 (953)
|++++|.++|++.....--.| +. .+|-..+-++...|+...|.+.+++... .| .......|+.+|...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 777777777777754321111 11 2223333355556777777777766432 12 123455566655432
Q ss_pred C--ChhHHHHHHHHHhccCC
Q 037236 756 G--ALKMGEKVAKTLLELEP 773 (953)
Q Consensus 756 g--~~~~a~~~~~~~~~l~p 773 (953)
. .++.+..-++.+-.++|
T Consensus 249 D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp -CCCHHHHCHHHTTSS---H
T ss_pred CHHHHHHHHHHHcccCccHH
Confidence 2 33444444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.014 Score=66.45 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHhC
Q 037236 671 KPDTFTFVGILMACNHA--G---LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--------GKLDDAFKLIIEM 736 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~--g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------g~~~eA~~~~~~~ 736 (953)
..|...|..++.+.... + ..+.|..+|+++++ +.|+ ...|..+..++... +++..+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44778888888776543 2 37789999999987 7888 55566554444221 2344555555543
Q ss_pred C----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 737 P----EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 737 ~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
. ...++.++..+.-.....|+++.|...++++++++| +..+|..++.+|...|+.++|...++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 234567788887777788999999999999999999 578999999999999999999998766544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00065 Score=53.75 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..|++++|+++|+.+.+. .|+ ...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555442 232 3444444555555555555555554443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.61 Score=49.48 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=82.4
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++... +-+++.|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455566788899999999888888999999999999999999886665332 22458888899999988888
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhh
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDR 633 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 633 (953)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8877766552 225668889999999988776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.018 Score=53.31 Aligned_cols=150 Identities=9% Similarity=0.026 Sum_probs=99.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhhcCCH
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK-PKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~lv~~l~~~g~~ 726 (953)
+..+.=+++...+-..+-.+ ..|....-..|..+....|+..||...|++... |+- -|....-.+..+....+++
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccH
Confidence 33344455555554444444 567666777788888888888888888887743 443 3456666677777778888
Q ss_pred HHHHHHHHhCCC-CC---ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 727 DDAFKLIIEMPE-EA---DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 727 ~eA~~~~~~~~~-~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.+|...+++... +| .+-..-.+...+...|..+.|+.+++.++.--| ++..-...+.+++++|+.+++..-...+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 888877776543 22 122334456667778888888888888888777 5566677778888888887776644333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.019 Score=50.71 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHH
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-EHYACVVDML 720 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l 720 (953)
.+..++-..|+.++|+.+|++.++.|..+. ...+..+.+++...|++++|..+++.....++-.+.. .....+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345677888999999999999999887664 3567788899999999999999999887754332212 2222344577
Q ss_pred hhcCCHHHHHHHHHh
Q 037236 721 GRAGKLDDAFKLIIE 735 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~ 735 (953)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999999887654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.045 Score=57.62 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=78.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA-GLVENGLKYFSQMQKLHAVKPK----LEHYACVVDM 719 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~ 719 (953)
.+..|...|++..|-+++.+ +...|... |++++|+++|++..+.+..... ...+.-+..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 45667777777776665554 44567777 8999999999998776543333 4456677889
Q ss_pred HhhcCCHHHHHHHHHhCCC---C-C--ChhHHHHHHH---HHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 720 LGRAGKLDDAFKLIIEMPE---E-A--DAGIWSSLLR---SCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~---~-~--~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+.+.|++++|.++|++... . + ...+-..++. .+...||...|...+++..+.+|.-..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999999987642 1 1 1112122222 3355689999999999999999965443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=53.03 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 037236 652 HGYGKEAIELFEKMLALGH-KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~-~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA 729 (953)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788888888888888422 12344555678888888888888888876 22 3333 23334457778888888888
Q ss_pred HHHHHh
Q 037236 730 FKLIIE 735 (953)
Q Consensus 730 ~~~~~~ 735 (953)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.095 Score=48.67 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
++..--.|..++...|+..+|...|++...--+.-|......+..+....+++.+|...++.+.+...-.-+++..-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33334455666666666666666666665532233556666666666666666666666666644221111133344455
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
..|...|+.++|+.-|+.... -|++..---......++|+.+++..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 666666666666666655433 2443322222223344554444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=1 Score=50.54 Aligned_cols=302 Identities=14% Similarity=0.119 Sum_probs=138.5
Q ss_pred HHHHHhcCCcccHHHHhccCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccc
Q 037236 413 VVAYAKCGSEISAENVFHGMDSR-----TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKS 487 (953)
Q Consensus 413 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 487 (953)
|.++.+.|++-...++++.-... -...|+.+...+.....+++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 34445555555555544432211 1135556666565555666665555542210 112222222222
Q ss_pred cchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037236 488 LHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSI 567 (953)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 567 (953)
++.-+.+ ...++.+....-.+.+|+...|.-++|.+.|-+-..|. +-+..|...++|.+|.++-++.+-
T Consensus 838 f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 2221111 11233445555566677777777777776665544332 234456666667777766555431
Q ss_pred CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH---HHHH
Q 037236 568 GVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT---SWNA 644 (953)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~ 644 (953)
|...| ++.- .+-++ +. +..+ ---|.++.+.|+.-+|.+++.+|.++... .+.-
T Consensus 907 ---~qv~t---liak--------~aaql---l~------~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQT---LIAK--------QAAQL---LA------DANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHH---HHHH--------HHHHH---Hh------hcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 21111 1110 01111 11 1111 12367788888888888888887632111 1111
Q ss_pred -----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 645 -----IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 645 -----li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
++.++. ..+..++++-.++....|...|... +...|...++-++.+..-+ | ....|+-.|..-
T Consensus 963 ~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQr 1030 (1189)
T KOG2041|consen 963 LKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHH
Confidence 111111 1233445555555555554433322 2234444444444443211 1 224556666666
Q ss_pred HhhcCCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 720 LGRAGKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
-..-|+.+.|+.---.+.. -|...+++.|.-+......+-..-+++-++-.
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 6778888888765433321 24455555444333333333344444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.56 Score=49.02 Aligned_cols=247 Identities=16% Similarity=0.124 Sum_probs=164.9
Q ss_pred cHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc--ccchHHHHHHHHHHHHcCCCCCccHH----
Q 037236 540 SWNTMIAGYSQ--NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ--LSALRLGKETHCYALKAILTNDAFVA---- 611 (953)
Q Consensus 540 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---- 611 (953)
.|.+|-.++.. .|+...|.++-.+-.+. +..|...+..+|.+-.. .|+.+.+++-|+.|.. |+.+-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 35555555544 56777777666554432 45677777788876544 5899999999998876 33322
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDTFT--FVGILMACN 685 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t--~~~ll~a~~ 685 (953)
..|.---.+.|..+.|...-++... .-...|.+.+...+..|+++.|+++.+.-++.. +.||..- -..|+.+-.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 1222223467888888888877652 344578899999999999999999999876643 4555422 223333221
Q ss_pred h---cCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhH
Q 037236 686 H---AGLVENGLKYFSQMQKLHAVKPKLE-HYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 686 ~---~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
. ..+...|...-.+. ..+.|+.. .-..-...|.+.|++.++-.+++.+-. +|.+.+|..+.. .+.|+...
T Consensus 238 ~s~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~ 312 (531)
T COG3898 238 MSLLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTAL 312 (531)
T ss_pred HHHhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHH
Confidence 1 22345555554443 45888833 333345789999999999999998854 788888866553 45666443
Q ss_pred HH-HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 761 GE-KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 761 a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.. +-.+++-++.|+|......++..-...|.+..|..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 32 34567778899999999999988888887766654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=49.08 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG-LVENGLKYFSQMQK 702 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 702 (953)
+...|..+...+...|++++|+..|++.++ +.| +...+..+..++...| ++++|++.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 566788888888899999999999999888 567 5567888888888888 68899988888765
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0067 Score=62.85 Aligned_cols=128 Identities=6% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--------CCCh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQ---KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--------EADA 742 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--------~~~~ 742 (953)
..|-.|.+.|.-.|+++.|+...+.-. +.+|-... ...++.|...+.-.|+++.|.+.++.... ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345566666667788888887765432 33443333 45677788888888888888888765421 1234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLEL------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
....+|.+.|....+++.|+....+=+.+ .-....++..|++.|...|..+.|..+...-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56667888888777888887776665443 1235567888888888888888887754443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.073 Score=54.30 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC--CC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD--KD-VTS---WNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMAC 684 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~ 684 (953)
.....+.+.|++++|.+.|+.+.. |+ ... .-.++.+|.+.+++++|+..|++.++. .|+ ...+.....+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344455566777777777777652 22 111 123455666777777777777777763 442 22333333333
Q ss_pred Hh--cC---------------C---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhH
Q 037236 685 NH--AG---------------L---VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGI 744 (953)
Q Consensus 685 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~ 744 (953)
++ .+ + ..+|...|+..++.+ |+ ..-..+|...+..+...-- .-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la-~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLA-KY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHH-HH
Confidence 21 11 1 123444444444433 22 1122233222221110000 00
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
--....-|.+.|++.-|..-++.+++--|+ .+.+...+.+.|...|..++|..+.+.+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 012334477788898999999999988776 455667888999999999999998876643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.029 Score=57.60 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP 708 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 708 (953)
|..-+..+...|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+++.+.-.|
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 333333335567777777777777773 5543 4566677777777777777777777766554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.31 Score=53.94 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a 693 (953)
-..|+...|+.++|..+ +..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 34566667777776544 3344545555555444322 2445555555555666777788
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCh
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADA 742 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~ 742 (953)
.++|.+|-. ...++++....|+++||..+-++.|. .||.
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 888887732 34678888999999999999998885 3443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.017 Score=59.40 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
...|++++|...|+.+++.+.-.+- ...+-.+..+|...|++++|...|+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445566666666655554322211 223334444445555555554444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.22 Score=48.96 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLKD--KDV--------TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ 679 (953)
-+++|...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-+|.+.-.+.++.+.++....-+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 345565555554445555555543332 122 2345677777788889999999999999543337777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-ChhHHHHHHHHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHA----VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-DAGIWSSLLRSCR 753 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-~~~~~~~ll~~~~ 753 (953)
|.+.-.+.|+.+.|..+|+...+..+ +.-..-....+...|.-++++.+|...+.+++.. | |+...|+-.-...
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 89999999999999999997754432 2222233333444566678889999999888763 2 3444443333334
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
-.|+...|.+..+.+.+..|.....-..+.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 4688889999999999998876555444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.003 Score=44.65 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
.+|..+..++...|+++.|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999998887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0059 Score=48.99 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
.+|.+.+++++|.+.++.+.. +.++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 467777888888888877654 34566777788888889999999999999999999887655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.4 Score=49.49 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred ChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHH
Q 037236 215 FVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLA 294 (953)
Q Consensus 215 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 294 (953)
.+++|.+..+.-|.| ..|..+.......-.++.|...|-+.- .-.|++.- ..-..+|..-
T Consensus 678 gledA~qfiEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~-dY~Gik~v-----------------krl~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCG-DYAGIKLV-----------------KRLRTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhc-cccchhHH-----------------HHhhhhhhHH
Confidence 467777776665543 456666666566666666666665551 11233210 0001111111
Q ss_pred HHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCc----
Q 037236 295 VKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPN---- 370 (953)
Q Consensus 295 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~---- 370 (953)
.+ .+=|.+ -.|++++|++++-.+..+|. -|..+.+.|++-...++++. .| ...|
T Consensus 738 ~q----------~aei~~--~~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~--~d~dD~~~ 795 (1189)
T KOG2041|consen 738 QQ----------RAEISA--FYGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GG--SDDDDEGK 795 (1189)
T ss_pred HH----------hHhHhh--hhcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cC--CCcchHHH
Confidence 11 011111 13556666666666665553 23444455555555444432 11 1111
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhc
Q 037236 371 EVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQN 450 (953)
Q Consensus 371 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 450 (953)
...+..+-..+.....++.|.+.+..... ....+.+|.+..++++-+.+-..+++. ....-.|...+...
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhh
Confidence 12233333333333344444443332110 112445555555555555555555543 33445566666677
Q ss_pred CChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHH
Q 037236 451 GDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEI 494 (953)
Q Consensus 451 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 494 (953)
|..++|.+.|-+--. | ...+..|..++++.+|.++
T Consensus 866 GMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 866 GMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred chHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHH
Confidence 777777666543211 1 1234455555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.39 Score=50.64 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=66.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
.-..+.|++.+|.+.|.+.+. +.| +...|.....+..+.|+.++|+.-.+...+ +.|. +..|-.-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 334566667777777776665 334 334455555566666777777666665543 4444 33333333444
Q ss_pred hhcCCHHHHHHHHHhCCC-CCCh------------------hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 721 GRAGKLDDAFKLIIEMPE-EADA------------------GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~-~~~~------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
.-.++|++|.+-+++... +.+. .-|-.+++.-+...+.+......+.++..+|+-.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 445566666666654432 1111 1244444444444455555555566666677643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=62.50 Aligned_cols=118 Identities=12% Similarity=0.012 Sum_probs=90.4
Q ss_pred CCCchhhhHHHHHHHhcCChhhHHHHhhcCCC-CC-----chhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccH
Q 037236 95 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RN-----LFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTF 168 (953)
Q Consensus 95 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 168 (953)
+.+..-...+++......+++++..++.+.+. |+ ..|..++|+.|...|..++++.++..=.. .|+-||.+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhH
Confidence 34444455566666677777778887777653 21 23567899999999999999999988888 8999999999
Q ss_pred HHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhcc
Q 037236 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 213 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 213 (953)
+.++..+.+.|++..|.++...|..++.-.++.++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888888777777666666555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.01 Score=63.82 Aligned_cols=64 Identities=22% Similarity=0.041 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN---YVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|...+++.-+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777777777888888888888888888877744 77788888888888888775555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=60.25 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 758 (953)
.-.+.+.+.|++..|..-|++++......- .-+.+|..... ..-...+.+|...|.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~--------------~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR--------------SFDEEEQKKAE-----ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc--------------cCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhH
Confidence 446677788888888888777654221110 00111111111 11224556666677888899
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEI 838 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i 838 (953)
..|.....++++++|+|..+.+.-+.+|...|.++.|...++++.+ ..|..+.|
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~ 327 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAA 327 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHH
Confidence 9999999999999999999999999999999999999998888876 45777888
Q ss_pred HHHHHHHHHHHHh
Q 037236 839 RGMWGRLEEQISK 851 (953)
Q Consensus 839 ~~~l~~l~~~~~~ 851 (953)
...|..|..++++
T Consensus 328 ~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 328 RAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.29 Score=52.33 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKDK-------DVTSWNAIIGGHGI---HGYGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
-.|+-.|....+++...++.+.+... ....--...-++.+ .|+.++|+.++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455678888888888888888732 12222234455666 789999999999977666677888888777
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-----CCC--
Q 037236 682 MACNH---------AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLD----DAFKLI---IE-----MPE-- 738 (953)
Q Consensus 682 ~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~----eA~~~~---~~-----~~~-- 738 (953)
..|-. ....++|+..|.+. +.++|+..+--.++-++.-+|.-. |..++. .. -..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 76531 23477888888755 457776433333344444455322 222222 11 111
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..|--...+++.++...||.+.|.+++++++.+.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2444556899999999999999999999999997743
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.37 Score=52.34 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=107.4
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 037236 640 TSW--NAIIGGHGIH-----GYGKEAIELFEKMLA-LGHKPDT-FTFVGILMACNH---------AGLVENGLKYFSQMQ 701 (953)
Q Consensus 640 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~P~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 701 (953)
..| ..++.|.... -..+.|+.+|.+... +.++|+. ..|..+..++.. .....+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554431 135778889999882 2267754 444444333321 233456777776665
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+ +.|+ ......+..++.-.|+++.|..+|++... .|| +.+|......+.-.|+.+.|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5 5554 66666777777888889999999998764 554 5688888888889999999999999999999987776
Q ss_pred HHHHHHH-HHhcCCchHHHHHHH
Q 037236 779 YVLVSNI-YAGSEKWDDVRMMRQ 800 (953)
Q Consensus 779 ~~~l~~~-y~~~g~~~~a~~~~~ 800 (953)
-+.--++ .+--...++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHh
Confidence 6655555 333445677777653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.025 Score=49.97 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEE----A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGS 789 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~ 789 (953)
.++-..|+.++|+.++++.... + -...+-.+.+.++..|++++|..++++.++-.|+ +......++-.+...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3344445555555555443321 1 1224445666677777777777777777776676 666666777777778
Q ss_pred CCchHHHHHH
Q 037236 790 EKWDDVRMMR 799 (953)
Q Consensus 790 g~~~~a~~~~ 799 (953)
|+++||....
T Consensus 89 gr~~eAl~~~ 98 (120)
T PF12688_consen 89 GRPKEALEWL 98 (120)
T ss_pred CCHHHHHHHH
Confidence 8888877743
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.09 Score=55.12 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=68.7
Q ss_pred hHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh-cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHH
Q 037236 575 SIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK-CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHG 650 (953)
Q Consensus 575 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 650 (953)
+|..++..+-+.+..+.++.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+... ..+...|...+.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555322 1233444444444333 344444777777665 456666777777677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..|+.+.|..+|++.+.. .|.. ..|...+.-=.+.|+++...++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776664 3322 3566666666666777777777666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=49.65 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=73.6
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK----AENYVLVSNIYAGSEK 791 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~ 791 (953)
-++...|++++|++.|.+... +.++..||+-..+++..|+.+.|..-+++++++--+. -.+|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 357788899999998877643 4578899999999999999999999999999985433 2467889999999999
Q ss_pred chHHHHHHHHHHHCC
Q 037236 792 WDDVRMMRQRMKERG 806 (953)
Q Consensus 792 ~~~a~~~~~~m~~~~ 806 (953)
-+.|..-+....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999888777655
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.1 Score=57.02 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=87.9
Q ss_pred cCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc--CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHH
Q 037236 567 IGVQPCEISIVSILSACSQLSALRLGKETHCYALKA--ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK----DKDVT 640 (953)
Q Consensus 567 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~ 640 (953)
.+...+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..++..=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567777778888888877788777776666554 232233444588888888888888888877644 37888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
++|.++..+.+.|++..|.++..+|..++...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888777666777777666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=3.6 Score=47.13 Aligned_cols=336 Identities=11% Similarity=0.034 Sum_probs=165.1
Q ss_pred CCCchhhHHH-----HHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCc---ccHHHHhccCCC--CC
Q 037236 367 MKPNEVTVLN-----VLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSE---ISAENVFHGMDS--RT 436 (953)
Q Consensus 367 ~~p~~~t~~~-----ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~--~~ 436 (953)
++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+.++=+++.. .+
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~ 506 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTP 506 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCC
Confidence 5554444433 4555555666666666665553221111 45666666666665332 223333344444 45
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC----CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhh
Q 037236 437 VSSWNALICGYAQNGDHLKALDYFLQMTHSDL----EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGIS 512 (953)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (953)
.++|..+..-..+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+....+.-++...-..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~-------- 578 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR-------- 578 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH--------
Confidence 67888888888888998888877764222110 011122333344444555555554444443322100
Q ss_pred HHHHHHhcCChhHHHHHHHhccc-CCcccHHHHHHHHHhcCChhHHHHHHH--HHH----HcCCCCChhhHHHHHHHhcc
Q 037236 513 LLSLYMHCEKSSSARVLFDEMED-KSLVSWNTMIAGYSQNKLPVEAIVLFR--RMF----SIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+.+....+.-.|..+|.+..+ .|..+ +-+.|- .++-.+++.-|. ... ..|..|+ ....-++|++
T Consensus 579 -s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~ 650 (829)
T KOG2280|consen 579 -SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAK 650 (829)
T ss_pred -HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhh
Confidence 0001111222333344433322 11110 111111 222222222221 100 0122232 2233344444
Q ss_pred ccchHHHHHH-------H---HHHH-HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 037236 586 LSALRLGKET-------H---CYAL-KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 586 ~~~~~~a~~~-------~---~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (953)
......+.+. + ..+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 3332111111 1 1111 122222222233334445557888888888888887777777777888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+++-+++-+.+. + ++-|.-...+|.+.|+.+||.+++.+.. + +.-.+.+|.+.|++.+|.++--
T Consensus 731 weeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~------~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 731 WEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG------G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC------C----hHHHHHHHHHhccHHHHHHHHH
Confidence 876665554432 1 4556666778888888888888875441 1 1146778888888888877654
Q ss_pred h
Q 037236 735 E 735 (953)
Q Consensus 735 ~ 735 (953)
+
T Consensus 795 ~ 795 (829)
T KOG2280|consen 795 E 795 (829)
T ss_pred H
Confidence 3
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.64 Score=50.50 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
+...|+.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|.+.|+.++|+..++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666666666666666 45542 2466666666666666666666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.6 Score=45.11 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=46.2
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHH-HHHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAI-LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSW-NAIIGGH 649 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~ 649 (953)
..|...+++..+..-++.|+.+|..+.+.+ +.+++.++++++..|+ .|+...|.++|+--. -+|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345555555555556666666666666665 4456666666665554 355555555555322 2232222 2233333
Q ss_pred HhcCChHHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEK 664 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~ 664 (953)
...|+-+.|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 444555555555553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.2 Score=45.39 Aligned_cols=54 Identities=9% Similarity=-0.079 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
..-|.+.|.+..|..-|+.+++.+.-.|. .+....|+++|.+.|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34455666666666666666665554444 4455555666666666666655443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.059 Score=51.89 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=72.2
Q ss_pred HHHhhhc--CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 037236 628 RRVFDRL--KDKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA------------- 687 (953)
Q Consensus 628 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~------------- 687 (953)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356777777777777643 66666777778888888888888888888765431
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 037236 688 ---GLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725 (953)
Q Consensus 688 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~ 725 (953)
.+-+-|++++++| +.+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688999999 679999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.24 Score=49.13 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHK-P-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
.....+...|++.+|++.|+++...... | -......++.++...|++++|...+++.++.++-.|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3455567778888888888888874211 1 2344566777888888888888888888777766665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=3.8 Score=45.86 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=128.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA 683 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a 683 (953)
+...|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777777778889999999999988744 2335655555555558888888777766664333345555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhCCC-CCChhHHHHHHH-----HHH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAF---KLIIEMPE-EADAGIWSSLLR-----SCR 753 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~---~~~~~~~~-~~~~~~~~~ll~-----~~~ 753 (953)
+...|+++.|..+++.+.+.+ |+ +..-.--+.+..|.|.++.+. +++..... .-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 778899999999999997754 76 444444467788899999988 66654432 233333322222 145
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
..++.+.|..++.++.+..|++...|..+.++....+-.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 578999999999999999999999999999988777633
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.048 Score=46.37 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCcchHHHHHHhhcccc--------ccchhhHHHHHHHHhCCCCchhh
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDL-EPDLFSIGSLILACTHLK--------SLHRGKEIHGFVIRNGLEGDSFT 509 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~ 509 (953)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 999999999999877643 34456777888888888888888
Q ss_pred HhhHHHHHHh
Q 037236 510 GISLLSLYMH 519 (953)
Q Consensus 510 ~~~li~~y~~ 519 (953)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=48.17 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVK--PKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.....|+.+.+...++.+...+.=. |+... ..-.....+.++++ -..++..++..+...|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHH
Confidence 3455677778887777776654211 11111 11122222222221 12355667777888999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+...+++++.++|-|...|..+..+|...|+..+|.++++.++
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.3 Score=42.69 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=139.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
..........+...+.+..+...+.... ......+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 4566667777788888888887777653 3445566677777778888889999998888743333 122222333
Q ss_pred -HHHhcCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC--ChhHHHHHHHHHHh
Q 037236 683 -ACNHAGLVENGLKYFSQMQKLHAVKP----KLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--DAGIWSSLLRSCRT 754 (953)
Q Consensus 683 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--~~~~~~~ll~~~~~ 754 (953)
++...|+++++...++.... ..| ....+......+...++.++|...+.+... .+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 78889999999999988843 333 234444445556778899999988877654 23 35778888888888
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999988777778888888877778888876665544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.053 Score=46.14 Aligned_cols=78 Identities=18% Similarity=0.037 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHhhhccCCC-CCChhhHHHHHHhhhcCC--------CchHHHHHHHHHHHhCCCCCchHH
Q 037236 236 SIICGSSENGFSCESFDLLIKMMGCEEGF-IPDVATVVTVLPVCAGEG--------NVDLGILVHGLAVKLGLTRELMVN 306 (953)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 306 (953)
..|..+...+++..-..+|+.+ +..|+ .|+..+|+.+|.+.++.. .+...+.+++.++..++.|+..+|
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqsl--kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSL--KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHH--HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455566679999999999999 88999 999999999999887554 234456788899999999999999
Q ss_pred HHHHHhhHh
Q 037236 307 NALVDMYAK 315 (953)
Q Consensus 307 ~~li~~~~~ 315 (953)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.062 Score=56.63 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=103.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
-.+.|.+.|++..|...|++.+.. -+ +...-+.++..... . .-...+..|.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 466788999999999999997762 11 11111113322221 1 12345667778888999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV-RMMRQR 801 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 801 (953)
++.+|++..++... ++|+-..---..+|...|+++.|+..++++++++|+|-.+..-|..+-.+..+.++. .++++.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887764 567777878888999999999999999999999999999999999888888777777 447888
Q ss_pred HHH
Q 037236 802 MKE 804 (953)
Q Consensus 802 m~~ 804 (953)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=3.5 Score=47.17 Aligned_cols=334 Identities=11% Similarity=0.001 Sum_probs=167.1
Q ss_pred ccCCCCCChhhHHH-----HHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCC---hhHHHHHHhcCCC
Q 037236 260 CEEGFIPDVATVVT-----VLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGF---LSEAQILFDKNNN 331 (953)
Q Consensus 260 ~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~ 331 (953)
..-|++.+..-|.. +|+-+...+.+..|.++-..+--.-... ..++.....-+.+..+ -+.+.++=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35566666655543 4566666777777777766654222122 5677777777776532 2334444445555
Q ss_pred --CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh----------hHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 332 --KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV----------TVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 332 --~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
...++|..+.+--.+.|+.+-|..+++ ..|+.. -+...+.-+...++.+...+++-++..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle--------~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLE--------LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHh--------cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 567888888888889999999988887 444432 244445555566666655555444433
Q ss_pred cCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC-CChhhHHHHHHHHHhcCChHHHHHHHH--Hhhh-CCCCCCcchH
Q 037236 400 HGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS-RTVSSWNALICGYAQNGDHLKALDYFL--QMTH-SDLEPDLFSI 475 (953)
Q Consensus 400 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~ 475 (953)
.- +...+ .....+...|..++..... .|.. .+ ..+.+.++-.+++..|. .... .-+.+-....
T Consensus 575 ~~---~~s~l------~~~l~~~p~a~~lY~~~~r~~~~~---~l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 575 KL---NRSSL------FMTLRNQPLALSLYRQFMRHQDRA---TL-YDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred HH---HHHHH------HHHHHhchhhhHHHHHHHHhhchh---hh-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 21 00111 1111222233333332211 1110 01 11112222222222221 1000 0011122223
Q ss_pred HHHHHhhccccccchhhHHHHH----------HH-HhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHH
Q 037236 476 GSLILACTHLKSLHRGKEIHGF----------VI-RNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTM 544 (953)
Q Consensus 476 ~~ll~~~~~~~~~~~a~~i~~~----------~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 544 (953)
...-.++++........+..+. +. +.|......+.+--+.-+...|+..+|.++-.+..-+|-..|---
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk 721 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLK 721 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHH
Confidence 3333444444332211111111 11 112222222333334445566777788888777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 037236 545 IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCL 624 (953)
Q Consensus 545 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 624 (953)
+.+++..+++++-.++-+.+. +++-|..+..+|.+.|+.++|..+...+.. +.-.+.+|.++|++
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDV 786 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccH
Confidence 777888887777555544432 145566666777777776666665544311 11456666666666
Q ss_pred HHHHHH
Q 037236 625 EQSRRV 630 (953)
Q Consensus 625 ~~A~~~ 630 (953)
.+|.++
T Consensus 787 ~eAad~ 792 (829)
T KOG2280|consen 787 KEAADL 792 (829)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.79 E-value=3.5 Score=44.35 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=29.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
-.+|++.++.-.-.-..+ +.|+..+|..+.-......++++|+.++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666555555555 66666666666666666666677766664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.17 Score=51.47 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCC-hhH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG---LVENGLKYFSQMQKLHAVKPK-LEH 712 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~-~~~ 712 (953)
|...|-.|...|..+|+++.|...|.+..+ +.| |...+..+..++..+. .-.++..+|+++++ .+|+ +..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 445555555555555555555555555555 333 3333444444333221 23345555555543 3333 334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
...|...+...|++.+|...++.|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444444555555555555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.95 Score=50.29 Aligned_cols=205 Identities=10% Similarity=0.024 Sum_probs=102.5
Q ss_pred HHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc
Q 037236 86 ELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDN 165 (953)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 165 (953)
+++. +.|..|+..+. ...++-.|++.+|-++|.+ .|.-..|+++|..|+- .
T Consensus 624 ~~~k-~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-F------ 674 (1081)
T KOG1538|consen 624 EERK-KRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-F------ 674 (1081)
T ss_pred HHHH-hcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-H------
Confidence 3444 55655665432 3446667888888888864 4566667777666554 0
Q ss_pred ccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCC
Q 037236 166 FTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENG 245 (953)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 245 (953)
-...-+...|+.++-+.+..+-.. +..++.--.+...++...|+.+.|..+. ..+|
T Consensus 675 ----D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g 730 (1081)
T KOG1538|consen 675 ----DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG 730 (1081)
T ss_pred ----HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence 112223334444433333222111 1111111112233444455555554432 2233
Q ss_pred CchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHH
Q 037236 246 FSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQIL 325 (953)
Q Consensus 246 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 325 (953)
-.+-+.++-+++ -..+..+.-.+-..+.+...+..|.++|..+-.. .+++++....+++++|-.+
T Consensus 731 W~d~lidI~rkl------d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 731 WVDMLIDIARKL------DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred HHHHHHHHHhhc------chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 333334444333 1223334444444455566666677776655322 3577788888888888888
Q ss_pred HhcCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 326 FDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 326 f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
-++.|+--...|-....-++.+.++++|.+.|.
T Consensus 796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred hhhCccccccccchHHHHhhhhhhHHHHHHHHH
Confidence 888887322233333333444444555544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.59 E-value=4.2 Score=43.82 Aligned_cols=352 Identities=10% Similarity=0.013 Sum_probs=173.1
Q ss_pred HHHhccccchHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCCh
Q 037236 378 LTSCSEKSELLSLKELHGYSLRHGFD----NDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDH 453 (953)
Q Consensus 378 l~~~~~~~~~~~a~~i~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 453 (953)
...+...|.+.+|+.++..++..=++ .+..+|+.++-++++.=-++. -+.+...=...|--||..|.+.=+.
T Consensus 135 a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 135 AHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH
Confidence 34455667777777766666554333 677777777666665421111 1111111112355555555443111
Q ss_pred HHHHHHHHHhhhCCCCCCcchHHHHHHhhccc--cccchhhHHHHHHHHhCCCCch-hhHhhHHHHHHhcCChhHHHHHH
Q 037236 454 LKALDYFLQMTHSDLEPDLFSIGSLILACTHL--KSLHRGKEIHGFVIRNGLEGDS-FTGISLLSLYMHCEKSSSARVLF 530 (953)
Q Consensus 454 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f 530 (953)
-++ -.=..+.|...-+..++....-. ..+.--.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-
T Consensus 211 ~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 211 FDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred Hhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 111 00011233333333333322211 1222223333333334444432 233344444443 334443333
Q ss_pred Hhcc--------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-------HHHHhc-cc---cchHH
Q 037236 531 DEME--------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-------ILSACS-QL---SALRL 591 (953)
Q Consensus 531 ~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~a~~-~~---~~~~~ 591 (953)
+.+. +.=+.++..++...++.++..+|-+.+.-+.-. .|+...-.- +-+..+ .- .++..
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 3222 223456777888888888888888887766543 343321111 111111 11 11222
Q ss_pred HHHHHHHHHHcCCCCCc-cHH-HHHHHHHHhcCC-HHHHHHHhhhcC---CCCHHHHHHHHH----HHHh---cCChHHH
Q 037236 592 GKETHCYALKAILTNDA-FVA-CSIIDMYAKCGC-LEQSRRVFDRLK---DKDVTSWNAIIG----GHGI---HGYGKEA 658 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~-~~~-~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~----~~~~---~g~~~~A 658 (953)
-..++..+....++... ++| .--..-|-+.|. -++|.+++..+. +.|..+-|.+.. .|.+ ......-
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRL 440 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22233333333322111 011 111233445555 778888888766 456655444322 2221 1123344
Q ss_pred HHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 659 IELFEKMLALGHKP----DTFTFVGILMA--CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 659 ~~l~~~m~~~g~~P----~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
+.+-+-+.+.|+.| +...-+.|..| +...|++.++.-+-.=.. .+.|++.+|..+.-.+....+++||.++
T Consensus 441 lkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44444556678887 33333444433 457888888876644443 3889999999999899999999999999
Q ss_pred HHhCCCCCChhHHHHH
Q 037236 733 IIEMPEEADAGIWSSL 748 (953)
Q Consensus 733 ~~~~~~~~~~~~~~~l 748 (953)
+...| |+..+|++-
T Consensus 518 l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 518 LQKLP--PNERMRDSK 531 (549)
T ss_pred HHhCC--CchhhHHHH
Confidence 99986 455555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.13 Score=55.63 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 689 LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR---------AGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 689 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~---------~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
..+.|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++... +.|+.....++.+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788899999866678888 6667666554422 2245567777776654 567888888888888899
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
+++.|...+++++.++|+.+.++...+++..-+|+.++|.+..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=6.8 Score=45.62 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=69.0
Q ss_pred HHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHH----HHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhh
Q 037236 203 SNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIIC----GSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
...-++++.+...++.|..+-+.-.. |...-..+.. -+-+.|++++|...|-+- -.-+.| +.+++-+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t---I~~le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIET---IGFLEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---cccCCh-----HHHHHHh
Confidence 34455666666677777766654332 2222222222 344678888888888766 222333 2344444
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
........-..+++.+.+.|+.. ..--+.|+++|.|.++.+.-.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44444455556667777777543 3334668888888888888777776655
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=4.3 Score=46.78 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc
Q 037236 407 LVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484 (953)
Q Consensus 407 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 484 (953)
.++..+|+.+.-.|++++|-...-.|...+..-|--.+..+...++......+ +.....+.+...|-.+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 35566777777788888888888888888888888888777777766544332 2211122344556666665544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.28 E-value=2 Score=42.61 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
+..-|.+.|.+..|..-++.+++.+.-.|. .+....|+..|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 344566666666666666666665544333 3344555566666665553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.062 Score=43.67 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----CC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVK----PK-LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~-~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
++..+...+...|++++|+.+|++..+..... |+ ..++..+..+|.+.|++++|++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555556666666666666666554321111 11 2334444444444555555444444
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=8.5 Score=44.87 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=70.7
Q ss_pred HHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHH----HHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCC
Q 037236 104 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS----GFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIA 179 (953)
Q Consensus 104 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~ 179 (953)
-+....+-.-++-|..+-..-..+ ...-..+.+ -+.+.|++++|...|-+-.. -+.| +.+++-+....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHHHHhcCHH
Confidence 355555556666666665543322 222222222 34568999999988877654 2333 34555565555
Q ss_pred ChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 180 DVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 180 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
....-..+++.+.+.|+. +...-+.|++.|.+.++.+.-.+..+.-+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555666677777787865 44455678888888888888777766655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.51 Score=47.84 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcC
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS---LLRSCRTYG 756 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~---ll~~~~~~g 756 (953)
.......|++.+|...|+..... .|+ .+.-..|+..|...|+.++|..++..+|.+....-|.. -+.......
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 33455678888888888877652 333 45566677888888888888888888876433333322 222222222
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH-HHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM-MRQRMKE 804 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 804 (953)
+..... .++.-+..+|+|...-+.|+..|...|+.++|.. ++..|+.
T Consensus 218 ~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222222 2344556799999999999999999999999998 4555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.17 Score=48.94 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHhc--ccCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccc-------------
Q 037236 527 RVLFDEM--EDKSLVSWNTMIAGYSQN-----KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQL------------- 586 (953)
Q Consensus 527 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 586 (953)
...|+.. ..+|..++..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 345666777777776653 55555666677788888888888888888776541
Q ss_pred ---cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 037236 587 ---SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG 622 (953)
Q Consensus 587 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 622 (953)
...+.|..++++|...|+.||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234556777777777777777777777777776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.5 Score=38.60 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+...|..++..++..+...+ . +..-++-++--...+-+=+-..+.++++-+-+.+.|- .....++..|.+.|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S--s-ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--S-NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--S--HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc--C-CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH
Confidence 44568888889998888763 1 2222333333333333444455556655443333332 123345566666554433
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
....-+++....|.-++-.+++..++.-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344566678888899999999988766678999999999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=53.81 Aligned_cols=256 Identities=13% Similarity=0.046 Sum_probs=141.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCC---CCcchHHHHHHhhccccccchhhHHHHHHH--Hh--CCC-CchhhHhhHHHHHH
Q 037236 447 YAQNGDHLKALDYFLQMTHSDLE---PDLFSIGSLILACTHLKSLHRGKEIHGFVI--RN--GLE-GDSFTGISLLSLYM 518 (953)
Q Consensus 447 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~--g~~-~~~~~~~~li~~y~ 518 (953)
+++.|+....+.+|+..++-|.. .=+..|..+-.+|.-++++++|.++|..=+ .. |-. -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45666666666666666665422 122234445555666666777766664422 11 110 01122223333344
Q ss_pred hcCChhHHHHHHHh-cc------cC--CcccHHHHHHHHHhcCC--------------------hhHHHHHHHHHH----
Q 037236 519 HCEKSSSARVLFDE-ME------DK--SLVSWNTMIAGYSQNKL--------------------PVEAIVLFRRMF---- 565 (953)
Q Consensus 519 ~~g~~~~A~~~f~~-~~------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~---- 565 (953)
-.|.+++|.-.-.+ +. .+ ...++..+...|...|+ .+.|.++|.+=+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443221 11 00 11233444555544332 123444443321
Q ss_pred HcCCC-CChhhHHHHHHHhccccchHHHHHHHHHHHH----cCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcC----
Q 037236 566 SIGVQ-PCEISIVSILSACSQLSALRLGKETHCYALK----AILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLK---- 635 (953)
Q Consensus 566 ~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---- 635 (953)
+.|-. .--..|..+-+.|.-+|+++.+...|+.-.. .|-. .....+..|.+.+.-.|+++.|.+.|....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11111 1113455555566667889999888764332 2321 233456677888888899999999888643
Q ss_pred ---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 636 ---DKD--VTSWNAIIGGHGIHGYGKEAIELFEKMLAL----G-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 636 ---~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+. ..+.-+|...|.-..++++|+.++.+-+.- + ..-....+.+|..++...|..++|+.+.+.-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 335567888888888899999988874431 1 111446788999999999999999887765543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.032 Score=45.43 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
..|+.+...|.+.|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666666666666543
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.5 Score=42.23 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG-HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE 711 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g-~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 711 (953)
-+..-.+.|++++|.+.|+.+..+. ..| ...+...++-++.+.+++++|+..+++..+.++-.|++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 3444567788999999998888752 122 456677778888889999999999998888888888754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.26 Score=45.92 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEH 712 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 712 (953)
....++..+...|++++|+.+.++++. ..| |...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445566777788888888888888888 567 777888888888888988888888877643 4688887554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=3 Score=50.34 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=90.6
Q ss_pred cCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV----GILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~----~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|..-+.++. ...|.-.+.---+||.+.+|+.++ +|+...+. +...-|...+.+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 355666666666554 222333344345677777777664 56655444 444445567777777777
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 697 FSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGI--WSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 697 ~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
|+..-+ + .--+.+|..+|++.+|+.+..++....|... -..|.+-+...++.-+|-++.+....
T Consensus 962 Ye~~Gk---l-------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---- 1027 (1265)
T KOG1920|consen 962 YERCGK---L-------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---- 1027 (1265)
T ss_pred HHHhcc---H-------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----
Confidence 765522 1 1124567778888888888887765445443 36777777777766666555554432
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 775 KAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 775 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|+ .--...|.+...|++|.++-..-
T Consensus 1028 d~---~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1028 DP---EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred CH---HHHHHHHhhHhHHHHHHHHHHhc
Confidence 11 12234567777788888765443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.5 Score=42.21 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=105.5
Q ss_pred HHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|-..|-..-|+.=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ ..| ...++..-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 334455555555555543 33 345677777777888889999999888888 566 344554445556667888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI-IEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+-|...-+..+-.|=...|-.+ --+.-+..+|..-+ ++.. ..|..-|+..+-.+..-. + .-+.+++++.+..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgk-i-S~e~l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGK-I-SEETLMERLKADA 226 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhh-c-cHHHHHHHHHhhc
Confidence 77666554432222312222211 22333556666443 3333 455566766665543322 1 1122333333332
Q ss_pred CCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDK-------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++ ..+|..|+..|...|..++|..++|..-.
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 232 46789999999999999999999987654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=5.5 Score=39.82 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=114.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH-HHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KDV-TSWNAIIG-GHGIHGYGKEAIELFEKMLALGHKP----DTFTFV 678 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~P----~~~t~~ 678 (953)
....+..+...+...+....+...+..... ++. ..+..... .+...|+.+.|...|++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344455556666667777777777776653 221 22333333 68888999999999999866 344 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRT 754 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~ 754 (953)
.....+...++.+++...+....+. .|+ ...+..+...+...|++++|...+..... .|+ ...+..+...+..
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 5555577888999999999888653 333 56677888888889999999998887654 343 4566666666666
Q ss_pred cCChhHHHHHHHHHhccCCC
Q 037236 755 YGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~ 774 (953)
.++.+.+...+++.++..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGRYEEALEALEKALELDPD 268 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc
Confidence 67799999999999999887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.15 Score=47.95 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred HhhcCCHHHHHHHHHhCCC-------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 720 LGRAGKLDDAFKLIIEMPE-------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
+.+.|++++|..-|..... +-.++.|..-..+..+.+..+.|....-+++++.|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3445555555555443321 123455666666677888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHC
Q 037236 793 DDVRMMRQRMKER 805 (953)
Q Consensus 793 ~~a~~~~~~m~~~ 805 (953)
++|+.-++++.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888773
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.3 Score=49.08 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
.|+.-+. +...|++.+|...|...++. -|+ ...+.-|..++...|++++|..+|..+.+.++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555444 45667899999999998885 342 345666888999999999999999999988887777 577777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE 738 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~ 738 (953)
|...+.+.|+.++|...+++...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888877776653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.7 Score=47.52 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChh--HHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAG--IWSSLLRS 751 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~--~~~~ll~~ 751 (953)
+-..+...+-+.|+.+||++.|++|.+.+...-.......|+..|...+++.|+..++.+-.. -|.+. .|++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566777789999999999999987654333355667799999999999999999988753 24433 45554444
Q ss_pred HHhcCCh---------------hHHHHHHHHHhccCCCCcch
Q 037236 752 CRTYGAL---------------KMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 752 ~~~~g~~---------------~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+.-++. ..|.+++.++++.+|.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4444431 23568899999999976653
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.30 E-value=17 Score=44.29 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=97.3
Q ss_pred CChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 521 EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
+++++|+.-+..+. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 56777777666665 233444455556677888888765 67777777766665432 11
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT--FV 678 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t--~~ 678 (953)
....+.--.-+|.++|+.++|.+. |...|++++|+.+..+|.. .-|... -.
T Consensus 951 ------~~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 ------EELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred ------HhccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 112233345678888888888655 4456788888887776633 112222 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.|..-+..+++.-+|-++..+... .| .--+..|+++..+++|+.+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 566677778887777777655432 23 23456777788888888776554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.2 Score=41.35 Aligned_cols=91 Identities=11% Similarity=-0.035 Sum_probs=53.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
..-+-..|++++|..+|.-+.. ..| |..-+..|..+|-..+.+++|...|........-.|.+ +-.+...|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhC
Confidence 3334566777777777776666 344 44445566666666777777777776654322222322 333556667777
Q ss_pred CHHHHHHHHHhCCCCC
Q 037236 725 KLDDAFKLIIEMPEEA 740 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~ 740 (953)
+.++|++.|+.....|
T Consensus 120 ~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 120 KAAKARQCFELVNERT 135 (165)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 7777777766655433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.7 Score=40.04 Aligned_cols=121 Identities=13% Similarity=0.299 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
.++..+...+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 344444444555555555554432 23445555666665543 2333444432 1233444556777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA-GKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~-g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
++++..++..+.. |...++.+... ++.+.|.+++.+ ..++..|..++..|.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK---QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 7777777765521 23334444444 777788887776 335667777776654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.066 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
.+|..++..+...|+++.|...++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999999864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.57 Score=41.91 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 670 HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 670 ~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5567777777777777777777777777777777776555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.098 Score=34.20 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
.+|..+...+...|+++.|...++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888889999999999999888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.47 Score=48.99 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=106.5
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc--CCCCCc---cHHHHHHHHHHh
Q 037236 548 YSQNKLPVEAIVLFRRMFSI--GVQPCEISIVSILSACSQLSALRLGKETHCYALKA--ILTNDA---FVACSIIDMYAK 620 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~y~~ 620 (953)
+.+..+.++|+..+.+-... ...---.++..+..+.++.|..++....---.+.. ...... ..|-.|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776653 11112245555666666666666554442111111 111111 122223333333
Q ss_pred cCCHHHHHHHhhhcC-----CC--C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc
Q 037236 621 CGCLEQSRRVFDRLK-----DK--D-VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH---KP--DTFTFVGILMACNHA 687 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~-----~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~P--~~~t~~~ll~a~~~~ 687 (953)
.-++.+++.+-..-. .+ + -...-+|..++...+.++++++.|+....--- .| .-..+.+|.+.+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 333333333322111 00 0 01222345555555667777777776654211 11 224566666667777
Q ss_pred CCHHHHHHHHHHHH---HhcCCCCChhHHHHH-----HHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHH
Q 037236 688 GLVENGLKYFSQMQ---KLHAVKPKLEHYACV-----VDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRS 751 (953)
Q Consensus 688 g~~~~a~~~~~~m~---~~~~~~p~~~~~~~l-----v~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~ 751 (953)
.++++|.-+..... +.+++..-..-|.++ .-+|...|++.+|.+..++... ..| ......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777666554432 233333222223332 2344555666556555544321 122 2234555666
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 037236 752 CRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l 771 (953)
|+..|+.|.|-.-++.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77777777766666665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.86 Score=50.78 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=88.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
....|+++++.++.+.-. +-| ...-...++.-+.+.|..+.|+++-..- . .-.++-.+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDP----------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------H---HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------H---HHhHHHHhcCCH
Confidence 345678888766664111 222 2344677788888999999998874322 2 124677889999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 727 DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 727 ~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
+.|.++.++. ++...|..|...+..+||++.|+.+++++ .-+..|+-+|...|+-+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999988764 47889999999999999999999999984 345678889999999877777766666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.99 Score=40.86 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.7
Q ss_pred HhhcCCHHHHHHHHHhCCC----CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 720 LGRAGKLDDAFKLIIEMPE----EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
..+.|++++|.+.|+.+.. .| ...+--.|+.++...|+++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3445566666655555432 11 2234445677778888888888888888888877654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.62 Score=46.45 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=78.8
Q ss_pred HHHHhhhcC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------
Q 037236 627 SRRVFDRLK--DKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL---------- 689 (953)
Q Consensus 627 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~---------- 689 (953)
.+..|.... ++|-.+|-+++..+..+ +..+=--..++.|.+-|+.-|..+|..|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 67888888888887654 4566667778899999999999999999987654322
Q ss_pred ------HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 690 ------VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 690 ------~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
-+=++.++++| +.+|+.||.+.-..|+.+++|.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 23478999999 7899999999999999999999864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.86 E-value=8.1 Score=43.83 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHHhcCCCCChhH
Q 037236 643 NAIIGGHGIHGYGKEAIELFEKMLALG-HKPDT-----FTFVGILMACN----HAGLVENGLKYFSQMQKLHAVKPKLEH 712 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 712 (953)
..+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+.| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 345666677788888888888766532 21111 12333333332 2456788999999887754 66444
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH-HHHHH
Q 037236 713 YACV-VDMLGRAGKLDDAFKLIIEMPE------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY-VLVSN 784 (953)
Q Consensus 713 ~~~l-v~~l~~~g~~~eA~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-~~l~~ 784 (953)
|... ..++...|++++|++.+++... +-....+--+.+.+...+++++|...+.++.+.+.-....| ...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 5667778999999999987543 11233455566677788899999999999999877655555 45566
Q ss_pred HHHhcCCc-------hHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHH
Q 037236 785 IYAGSEKW-------DDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLE 846 (953)
Q Consensus 785 ~y~~~g~~-------~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~ 846 (953)
.|...|+. ++|..++++......+ ++| ++-|--+.+..+.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k-----------------~~g-k~lp~E~Fv~RK~~~~~ 399 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK-----------------KAG-KSLPLEKFVIRKAQKYE 399 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHhh-----------------hcc-CCCChHHHHHHHHHHHH
Confidence 77788888 7777776666442211 122 45576667776666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=14 Score=38.61 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=109.8
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLP----VEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444444455555555433333333323344544444455566666653 3566666665333 455555445555
Q ss_pred HhccccchH--HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-ChHHH
Q 037236 582 ACSQLSALR--LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHG-YGKEA 658 (953)
Q Consensus 582 a~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A 658 (953)
++.+.+.-. ........+...-.+++..+-...+.++++.|+.+....+..-+..+|...-..-+.++...+ +...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 554443211 011222222222223345555555666666665433333333333444444444444454432 23455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE 738 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~ 738 (953)
...+..+.. .+|...-...+.++.+.|.. ++...+-...+. ++ .....+.+++..|.- +|...+..+..
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555554 45555666666666666663 444444433331 22 123455666666663 56665555543
Q ss_pred -CCChhHHHHHHHHH
Q 037236 739 -EADAGIWSSLLRSC 752 (953)
Q Consensus 739 -~~~~~~~~~ll~~~ 752 (953)
.||..+-..-+.+|
T Consensus 263 ~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 263 KFDDNEIITKAIDKL 277 (280)
T ss_pred hCCChhHHHHHHHHH
Confidence 45555444444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.5 Score=38.19 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 757 (953)
+++.-...++.+++..++..+.- +.|. .++-..-+..+.+.|++.+|+.+++++.. .|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33444577788999999888854 5666 33334445667889999999999998865 3555666788888876655
Q ss_pred hhHHHHHHHHHhccCC
Q 037236 758 LKMGEKVAKTLLELEP 773 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p 773 (953)
-..=...++.+++..|
T Consensus 93 D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA 108 (160)
T ss_pred ChHHHHHHHHHHhcCC
Confidence 5566666777777665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.86 Score=40.79 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQM--------------QKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP-- 737 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~-- 737 (953)
..++..++.++++.|+++....+.++. ....++.|+.....+++.+|+..|++..|+++++...
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555544332 1223455777778888888888888888888776543
Q ss_pred --CCCChhHHHHHHHHHHhcC
Q 037236 738 --EEADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 738 --~~~~~~~~~~ll~~~~~~g 756 (953)
.+-+..+|..|+.=+...-
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 3344677887777655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.4 Score=45.21 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPD--KAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
..|...+++.|+.++|.+.++.+++..|. +.+.+..|.+.+...+++.|+..+..+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444455666666666666666655443 34455566666666666666666555443
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.45 E-value=8.5 Score=39.40 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH---HHHHHHHhh
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY---ACVVDMLGR 722 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~lv~~l~~ 722 (953)
......|+..+|..+|...... .| +...-..+..++...|++++|..++..+-. .-...-+ ..-+..+.+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~----~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPL----QAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc----cchhhHHHHHHHHHHHHHH
Confidence 3455667777777777776663 44 344555666667777777777777665411 1111111 223455555
Q ss_pred cCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHHHHHHHHhcC
Q 037236 723 AGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELE--PDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g 790 (953)
+....+..++..+....| |...--.|...+...|+.+.|..-+=.++..+ -+|..+--.|..++..-|
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555555555554444 44555555566666666665544443333332 234444555555555555
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.2 Score=36.90 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=69.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHK-P-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~-P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
.....+.|++++|.+.|+.+...-.. | ....-..++.++...|++++|...+++.++.+.-.|++. |.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHH
Confidence 44456678888888888888875211 1 345667788888888888888888888888666666533 43333333322
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 724 GKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
...+ ..+..+.. .=+-.+....|...++.++..-|++.
T Consensus 96 ~~~~---~~~~~~~~------------~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDE---GSLQSFFR------------SDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhh---hHHhhhcc------------cccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222 12222211 00112234477777888888888654
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.31 E-value=19 Score=38.95 Aligned_cols=205 Identities=11% Similarity=0.172 Sum_probs=134.4
Q ss_pred cCCHHHHHHHhhhcC----CCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 037236 621 CGCLEQSRRVFDRLK----DKDVTSWNAIIGGH-GIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVE 691 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~ 691 (953)
.|+.++|.+.+..+. ++.+..+-+|+.+- ....+..+|+++|++..- .-|- .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 699999999999887 34566777777764 455689999999999877 5673 344555566778999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHH-HHHHHHHhhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHY-ACVVDMLGRAG---KLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~~~g---~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
++..+-....+.|.-.|=...| .-++..+.+.+ ..+.-.+++..|.-.--..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888877777777666653333 33344444433 3334344555554333355788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGS-----EKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMW 842 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l 842 (953)
++.+-+ ....-...+++|... ...+++.+....+.. ++.+|.-..+.+.-
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHHH
Confidence 999963 344445566666543 344444443332211 23556556666666
Q ss_pred HHHHHHHHhc
Q 037236 843 GRLEEQISKI 852 (953)
Q Consensus 843 ~~l~~~~~~~ 852 (953)
..+...+++.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 6666666543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.13 E-value=3 Score=47.23 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCHHHHHHHhhhcCC--CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 037236 622 GCLEQSRRVFDRLKD--KDVTSWNAII-GGHGIHGYGKEAIELFEKMLALG--HKP-DTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 622 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~~P-~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
...+.|.++++.+.. |+...|.-.- ..+...|+.++|++.|++..... .+. ....+.-+...+.-..+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555542 4444443322 23344555555555555443210 000 22333334444455555555555
Q ss_pred HHHHHHH
Q 037236 696 YFSQMQK 702 (953)
Q Consensus 696 ~~~~m~~ 702 (953)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=6.8 Score=39.30 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHhcccCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 518 MHCEKSSSARVLFDEMEDKSLV------SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
.+.|++++|.+.|+.+..+.+. +--.++-++-+.+++++|+..+++....-..-...-|...|.+.+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 4568999999999988754322 233455677889999999999999887543333344444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.05 E-value=14 Score=38.66 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred HHHHhccccchHHHHHHHHHHHHcC-----CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHH------
Q 037236 579 ILSACSQLSALRLGKETHCYALKAI-----LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-------DKDVT------ 640 (953)
Q Consensus 579 ll~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------ 640 (953)
+-.|...++.++.+.+.|+.+.+.. ......++.+|...|.+..++++|.-...+.. -.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555666777777776655431 12345677788888888888887665544332 12222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA----LGHKP-DTFTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
+.--|..++...|+..+|.+.-++..+ .|-.| -......+.+.|...|+.|.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122244456666776666666666443 23222 2233445566666777777766665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.00 E-value=4.6 Score=37.09 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCch
Q 037236 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSC 248 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 248 (953)
..++..+...+.......+++.+.+.+. .++...|.++..|++.. .......++. ..+......++..+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555566666666666666653 56677888888887653 3444455442 234444555666666667777
Q ss_pred HHHHHHHHh
Q 037236 249 ESFDLLIKM 257 (953)
Q Consensus 249 ~A~~l~~~m 257 (953)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 777777666
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.99 E-value=21 Score=38.65 Aligned_cols=143 Identities=16% Similarity=0.100 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-HH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-AC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ 715 (953)
=...|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+...|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34566667776666666777788888888777 4556666776666544 567777778877665533 443333 33
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
.++.+.+.++-+.|..+|+.... +.+ ..+|..++..-...|++..+...-++..++-|.....-+.++.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 45667778888888888875432 222 4578888887788888888888888888888866555444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.47 Score=48.49 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD--AGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~--~~~~~~ll~~~~~~g 756 (953)
-.+-|.++|.+++|+..|...+. +.| ++..|..-..+|.+..++..|+.=.+....-.+ ...|.--..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35667788888888888876654 445 456666667778888888777766655432111 234444444555567
Q ss_pred ChhHHHHHHHHHhccCCCCcc
Q 037236 757 ALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~ 777 (953)
+.++|.+-++.+++++|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888888888887543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.2 Score=37.42 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA 705 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 705 (953)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.=+++.++..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 34555666666666666655 344 455566666666666666666666555555333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.76 E-value=30 Score=40.34 Aligned_cols=105 Identities=17% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcC
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCG 317 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 317 (953)
|.-+.+.+.+++|+++.+.- .|..|... -..++...|+.+.-.|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~----~~~~~~~~--------------------------------i~kv~~~yI~HLl~~~ 406 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS----IGNEERFV--------------------------------IKKVGKTYIDHLLFEG 406 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc----cCCccccc--------------------------------hHHHHHHHHHHHHhcc
Confidence 55667788888888877665 23322110 1223455666666677
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhcc
Q 037236 318 FLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSE 383 (953)
Q Consensus 318 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~ 383 (953)
++++|-...-.|...+..-|---+.-+...++......++ .... .+.+...|..+|..+..
T Consensus 407 ~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~--~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 407 KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGP--PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCC--cccCchHHHHHHHHHHH
Confidence 7777777766666666666666666666666554433322 1111 12344456666655544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.60 E-value=13 Score=40.10 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=45.1
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccC---Ccc----cHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDK---SLV----SWNTMIAGYSQ---NKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
.|+-.|....+++...++.+.+... ++. .-....-++.+ .|+.++|++++..+......+++.|+..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344577777777777877777653 111 11123344555 7888888888888666666677777766555
Q ss_pred Hh
Q 037236 582 AC 583 (953)
Q Consensus 582 a~ 583 (953)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.1 Score=43.14 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC-hhHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD-AGIWSSLLR 750 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~-~~~~~~ll~ 750 (953)
|..-+ .+...|++.+|..-|...++.|.-.+- ...+-.|...+...|++++|...|..+.. .|- +..+--|..
T Consensus 145 Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44433 445678899999999999887644332 55666788888899999988888765532 221 234444555
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.....|+.+.|...++++++--|+.+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 5667788888888888888888866643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.07 E-value=21 Score=38.89 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCChhH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTFVGILMACNHAGLVENGLKYFSQMQKLH-AVKPKLEH 712 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~ 712 (953)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++...+.. .-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888888888888888888887743222 23344444556667788888888877776511 11101111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 713 YACVVDMLGRAGKLDDAFKL-IIEMPEEADAGIWSSLLRSCRTY------GALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~-~~~~~~~~~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
...+...+.. ..+..... ........-+.++..+..-+... ++.+.+...++.+.++.|+...++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012233333333333 788899999999999999999888888887
Q ss_pred HHh
Q 037236 786 YAG 788 (953)
Q Consensus 786 y~~ 788 (953)
+..
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 764
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=40 Score=39.97 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 653 GYGKEAIELFEKMLALG-HKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g-~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
.+.+.|..++.+..... ..+.. .....+.......+..+++..+++.... ...+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34566777776654432 22222 2222332222232224556666554321 111223333334444477777777
Q ss_pred HHHHHhCCCC-CChhHHHH-HHHHHHhcCChhHHHHHHHHHh
Q 037236 730 FKLIIEMPEE-ADAGIWSS-LLRSCRTYGALKMGEKVAKTLL 769 (953)
Q Consensus 730 ~~~~~~~~~~-~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 769 (953)
...|..|+.. .+..-|.- +..+....|+.+.|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777541 12222322 3334455677777777777763
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.16 Score=47.22 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=67.1
Q ss_pred HHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchH
Q 037236 170 CVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCE 249 (953)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 249 (953)
.+++.+.+.+.+....++++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888999998877777899999999999999988999998885433 444567777888888888
Q ss_pred HHHHHHHh
Q 037236 250 SFDLLIKM 257 (953)
Q Consensus 250 A~~l~~~m 257 (953)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 88888877
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=16 Score=36.14 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMF 565 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~ 565 (953)
.|..-..+|...+++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35555566777777777776665554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.20 E-value=20 Score=35.88 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=137.7
Q ss_pred cCChhHHHHHHHhccc--C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHH---cCC--CCChhhHHHHHHHhcccc
Q 037236 520 CEKSSSARVLFDEMED--K-----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFS---IGV--QPCEISIVSILSACSQLS 587 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~ 587 (953)
...+++|..-|+...+ + ...+...||..+.+.|++++.++.+.+|.. +.+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777776643 1 223455678888889999998888888753 222 234556777777666655
Q ss_pred chHHHHHHHHHHHH----c-CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--------CC-------HHHHHHHHH
Q 037236 588 ALRLGKETHCYALK----A-ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--------KD-------VTSWNAIIG 647 (953)
Q Consensus 588 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 647 (953)
..+.-..+++-..+ . +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555555433221 1 1111222335577778777888877777776641 11 235666778
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhcCCCCChh-----HHHHH
Q 037236 648 GHGIHGYGKEAIELFEKMLALG-HKPDTFTFVGILMACN-----HAGLVENGLKYFSQMQKLHAVKPKLE-----HYACV 716 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l 716 (953)
.|....+-.+-..++++.+.-. .-| ......++.-|. +.|.+++|..=|-++.+.|.-.-++. -|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888898877632 123 334456676663 67888888765555545554433322 25556
Q ss_pred HHHHhhcCC----HHHHHHHHHhCCC--CCChhHHHHHHHHHHhc
Q 037236 717 VDMLGRAGK----LDDAFKLIIEMPE--EADAGIWSSLLRSCRTY 755 (953)
Q Consensus 717 v~~l~~~g~----~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~ 755 (953)
..++.+.|- -.||. |. .|.......|+.+|...
T Consensus 279 ANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc
Confidence 677777662 12221 22 34556678888887654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.74 Score=47.12 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR 722 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~ 722 (953)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=....+. +.-. +..|+.-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 36679999999999999999888 688 999999999999999999988877776643 1111 2333333333333
Q ss_pred cCCHHHHHHHHHhCCC-CCCh
Q 037236 723 AGKLDDAFKLIIEMPE-EADA 742 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~-~~~~ 742 (953)
.|...||.+=++.... +|+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 5566677666665543 6663
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.95 Score=31.72 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
+|..+...|...|++++|+++|++.++ ..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 455566666666666666666666666 355
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.9 Score=43.20 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=76.8
Q ss_pred HHHHHHhcc--cCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-----------
Q 037236 526 ARVLFDEME--DKSLVSWNTMIAGYSQN-----KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS----------- 587 (953)
Q Consensus 526 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 587 (953)
.++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67778888888887654 455666667788999999999999999998876532
Q ss_pred -----chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 037236 588 -----ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCL 624 (953)
Q Consensus 588 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 624 (953)
.-+-+..++++|...|+.||..+-..|++++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345778888999999999999999999998887753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.78 E-value=7.1 Score=43.65 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
++..++|+++.|.++..+.. +...|..|......+|+.+-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 45556888888888877655 666888888888888888888888876432 4455556666777655555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+-+.... .| -++.....+.-.|+.++..+++.+
T Consensus 395 l~~~a~~-~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEE-RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHH-TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHH-cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544422 11 122222333344555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.48 Score=30.84 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777778888888888888888888774
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.90 E-value=9.3 Score=39.48 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=93.0
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG----ILMACNHAGLVENG 693 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~----ll~a~~~~g~~~~a 693 (953)
.|+..+|...++++. +.|..+|+--=.+|...|+.+.-...+++++.. ..||...|.. +..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 577777777777776 457778877777888888888888888877764 3455533332 23344577888888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-------ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-------DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
.+.-++..+ ++|. .-...++...+--.|++.|+.+++.+-...- .-.-|.+-+- +...+.++.|+.++
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~-~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF-HIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh-hhcccchhHHHHHH
Confidence 887776654 4443 3334456666777888888888877654210 1122322221 12235677777776
Q ss_pred HHHh--ccCCCCcch
Q 037236 766 KTLL--ELEPDKAEN 778 (953)
Q Consensus 766 ~~~~--~l~p~~~~~ 778 (953)
++=+ +++.+|+.+
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 6533 345555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.15 Score=47.38 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 037236 273 TVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCG 352 (953)
Q Consensus 273 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 352 (953)
.+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877677788999999999999888888888874332 333455666666666666
Q ss_pred HHHHHHHH
Q 037236 353 TFDLLRKM 360 (953)
Q Consensus 353 A~~l~~~m 360 (953)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.73 E-value=4.7 Score=38.41 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=33.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPD-----TFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..-+..+|++++|..-|.+.++. +.|. .+.|..-..+..+.+.++.|+.-....++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 44566777888888888777774 2221 23344444555666666666666555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.5 Score=32.21 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455788999999999999999999999886543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.3 Score=38.95 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC----HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK----LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~----~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
+++|+.-|++.+. +.|+ ...+.|+..+|...+. ..+|.++| ++|...
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F-------------------------~kA~~~ 102 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF-------------------------EKATEY 102 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH-------------------------HHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH-------------------------HHHHHH
Confidence 4455555555544 7788 6788888888776553 33444444 467888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
++++.+.+|+|......|--. ..|-.+..++.+.+.
T Consensus 103 FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 103 FQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 888888888877554433221 234555555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.31 E-value=36 Score=35.64 Aligned_cols=19 Identities=5% Similarity=-0.191 Sum_probs=11.8
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 037236 751 SCRTYGALKMGEKVAKTLL 769 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~ 769 (953)
.+...++++.|..-++.++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3555667777777666543
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.07 E-value=23 Score=33.99 Aligned_cols=129 Identities=16% Similarity=0.062 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH----
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT--FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC---- 715 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---- 715 (953)
|..++.... .+.. +.....+++....-.....+ -..+...+...|++++|...++.... .|.-+.+..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHH
Confidence 333444332 3333 55566666666421111222 22344567889999999998887643 233334443
Q ss_pred -HHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 -VVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 -lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
|..++...|.+|+|+..++....+. .+..-..-+..+...|+-+.|+..++++++.+++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 4456788999999999998765221 233344556678889999999999999999876544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.3 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 456666666666666666666666666 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.76 E-value=5.1 Score=38.70 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHH
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~ 762 (953)
..|.++-|.-=|.+... +.|+ ++.||.|.--|...|+++.|.+.|+.... .|. ..+..+-.-+..--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 44555555555554433 5566 56666666666667777777777766543 121 112212222233456777777
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 763 KVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+-+-+..+-+|+|| ..-.|+|....+
T Consensus 154 ~d~~~fYQ~D~~DP---fR~LWLYl~E~k 179 (297)
T COG4785 154 DDLLAFYQDDPNDP---FRSLWLYLNEQK 179 (297)
T ss_pred HHHHHHHhcCCCCh---HHHHHHHHHHhh
Confidence 77777777777776 333455554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.46 E-value=2.2 Score=39.53 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
..+++.+.++.++..+.-+.|+.+..-..-++++...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455677777777777777788888877788888888888888888777765543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.32 E-value=6.6 Score=40.37 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEHY 713 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 713 (953)
++..++..+...|+.+.+.+.++++.. ..| |...|..++.+|...|+...|+..|+.+.+ ..|+.|.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 444555555555666666666666655 345 555566666666666666666665555533 34555554433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.6 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.86 E-value=16 Score=33.39 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
...++.+++..+++.|.- +.|+ .+.-..-+..+.+.|+++||..++++....+ ....-..|+..|..-..-..=.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 347888888888888854 5565 2333334556788899999999998887643 4455556666664433222333
Q ss_pred HHHHHHhc
Q 037236 763 KVAKTLLE 770 (953)
Q Consensus 763 ~~~~~~~~ 770 (953)
..+..+++
T Consensus 98 ~~A~~~le 105 (153)
T TIGR02561 98 VHADEVLA 105 (153)
T ss_pred HHHHHHHH
Confidence 33444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.52 E-value=3.3 Score=37.65 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=47.4
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
..++.+.++.+++.+--+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888899999999999999999999999999999999999999988887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.52 E-value=6.8 Score=36.95 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+.|..-++.++.++|+...++..++++|...+.
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 357777889999999999999999999988665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.39 E-value=16 Score=36.25 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHH
Q 037236 28 GLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITM 107 (953)
Q Consensus 28 ~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~ 107 (953)
...|...-.+|.-.. ++++|...+.++.+...+......-.++ ++.|.-+..++. .++.-+..++.-..+
T Consensus 31 as~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhAAKa------yEqaamLake~~---klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHAAKA------YEQAAMLAKELS---KLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHHHHH------HHHHHHHHHHHH---HhHHHHHHHHHHHHH
Confidence 334555555666666 7777777777766511111111122222 233333333333 122334566777788
Q ss_pred HHhcCChhhHHHHhhc
Q 037236 108 YSLCGFPLDSRRVFDS 123 (953)
Q Consensus 108 y~~~g~~~~A~~~f~~ 123 (953)
|..+|.++.|--.+++
T Consensus 101 Y~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEK 116 (308)
T ss_pred HHHhCCcchHHHHHHH
Confidence 9999998888776665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.37 E-value=7.7 Score=40.07 Aligned_cols=159 Identities=16% Similarity=0.051 Sum_probs=118.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH----HHHHhhcCCH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV----VDMLGRAGKL 726 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----v~~l~~~g~~ 726 (953)
-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++.. .-.|+...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999985 333888888888999999999999988888754 236776555544 3456789999
Q ss_pred HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 727 DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 727 ~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++|++.-++... +.|.-.-.++.......|+..+|.+..++--..-.+ -+-.|-+.+-.|.+.+.++.|..++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988865 345556677777788899999999887774433111 24466777888999999999999876
Q ss_pred HHHHCCCccCCc
Q 037236 801 RMKERGLQKEAG 812 (953)
Q Consensus 801 ~m~~~~~~~~~~ 812 (953)
.=--+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 544444555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.34 E-value=18 Score=38.11 Aligned_cols=90 Identities=14% Similarity=0.342 Sum_probs=52.8
Q ss_pred HHHHHHhhhcCC-------CCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-C--
Q 037236 625 EQSRRVFDRLKD-------KDVTSWNAIIGGHGIHGY----GKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG-L-- 689 (953)
Q Consensus 625 ~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g-~-- 689 (953)
..|..+|+.|.+ ++-..+.+|+.. ..++ .+.+..+|+.+.+.|+.. |...+.+-+-++.... .
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 445666666652 233444444433 2222 356677888888888877 4444444444443222 2
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
+..+.++++.+. ..++++...+|..+.
T Consensus 198 v~r~~~l~~~l~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALK-KNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHH-HcCCccccccccHHH
Confidence 446778888884 568888888877664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.1 Score=29.67 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
|..|...|...|+++.|+.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=54 Score=34.28 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
++..+-...+.++++.|+..-.-.+.+.+..+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 3555555666666666664333333333333332 23566677777774 577777777763 456555544455443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.70 E-value=1.1 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhhcCCHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA 729 (953)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444445555554444
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.59 E-value=20 Score=41.26 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=108.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----------hhHHHHHHHhccccchHHHHHHHHHHHH-cCC-CCC
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE----------ISIVSILSACSQLSALRLGKETHCYALK-AIL-TND 607 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~-~~~ 607 (953)
+-..|+-.|....+++..+++.+.+++. ||. +.|...|+--.+-|+-+.|..+.--+++ .|. .|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666778888888888888888763 332 2344455555566777777776544443 332 23
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
+|||-||++-+- |- +-+.|...+..+.|.+.|++..+ +.|+..+=..+...+..+
T Consensus 279 --------Dm~Cl~GRIYKD------mF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYKD------MF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhhhh------hh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 456667764332 11 12335556667888999999888 688654322222222223
Q ss_pred CC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037236 688 GL-VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAK 766 (953)
Q Consensus 688 g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 766 (953)
|. ++...++ +. -| -.|-.+++|.|.++.-.++++- .+.+++-...+|+..|..+++
T Consensus 334 G~~Fens~El-q~----Ig--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 334 GEHFENSLEL-QQ----IG--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hhhccchHHH-HH----HH--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHH
Confidence 32 2222221 11 11 1244567888888776666543 245556666788889999999
Q ss_pred HHhccCCC
Q 037236 767 TLLELEPD 774 (953)
Q Consensus 767 ~~~~l~p~ 774 (953)
.++++.|.
T Consensus 391 ~mfKLk~P 398 (1226)
T KOG4279|consen 391 MMFKLKPP 398 (1226)
T ss_pred HHhccCCc
Confidence 99998874
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.72 E-value=39 Score=31.90 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHh
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFD 327 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 327 (953)
+....+.+.+++++..++..+|+.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445556777777777777777777777666655554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=6.9 Score=40.32 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIH 823 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~ 823 (953)
..++|-.++...++++.|.++.+.++.+.|+++.-.--.|-+|++.|.+..|..-.+..-+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----------------- 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----------------- 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----------------
Confidence 356777788899999999999999999999999988899999999999999998665554321
Q ss_pred EEeeCCCCCccHHHHHHHHHHHHHH
Q 037236 824 SFVVGDNMHPEWEEIRGMWGRLEEQ 848 (953)
Q Consensus 824 ~f~~~d~~hp~~~~i~~~l~~l~~~ 848 (953)
...|.++.|...+.+|...
T Consensus 246 ------P~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 246 ------PEDPISEMIRAQIHSIEQK 264 (269)
T ss_pred ------CCchhHHHHHHHHHHHhhc
Confidence 1346677777776666533
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.49 E-value=79 Score=35.12 Aligned_cols=157 Identities=10% Similarity=0.131 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
...-+++..+.++-++.-...+-.+|..-| -+...+..++..+... .-+.-..+++.+++..+. |+.....|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 344556666777777777777777777654 4556666777776666 444555667777776665 667777788888
Q ss_pred HhcCCHHHHHHHhhhcCCC------CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 037236 619 AKCGCLEQSRRVFDRLKDK------DV---TSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~~t~~~ll~a~~~~g 688 (953)
.+ ++.+.+...|.++..+ +. ..|.-++.- -..+.+..+.+..++... |..--.+.+--+-.-|+...
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 77 8888888888876521 11 145554431 123455555555555442 22223444445555666677
Q ss_pred CHHHHHHHHHHHHH
Q 037236 689 LVENGLKYFSQMQK 702 (953)
Q Consensus 689 ~~~~a~~~~~~m~~ 702 (953)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777776654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.22 E-value=25 Score=33.11 Aligned_cols=134 Identities=8% Similarity=0.044 Sum_probs=78.2
Q ss_pred HHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHH-HHHHhhHhcCChhHHHHHHhcC
Q 037236 251 FDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN-ALVDMYAKCGFLSEAQILFDKN 329 (953)
Q Consensus 251 ~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~ 329 (953)
++.++.+ ...+++|+...+..+++.+.+.|.+.... .++..++-+|..... .|+..-. ....+.++=-.|
T Consensus 14 lEYirSl--~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSL--NQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHH--HHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHH
Confidence 3455555 57788899999999999999988765443 344455444444333 3332221 222333332233
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 330 NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 330 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
..+=...+..++..+...|++-+|+++.+.... .+...-..++.+....+|...-..++.....
T Consensus 85 LkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 85 LKRLGTAYEEIIEVLLSKGQVLEALRYARQYHK------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333223466778889999999999999887532 2222334456666666665555555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.06 E-value=4.9 Score=41.28 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..++..+...|+.+.+...++++++.+|-+...|..|...|...|+...|+..++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666677778888888888888888888888888888888888888888888877765
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=1.4e+02 Score=37.41 Aligned_cols=139 Identities=10% Similarity=-0.010 Sum_probs=62.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH 686 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~ 686 (953)
|..+-...++.+...+.- ....+...+..+|...-...+.++...+..+. +.... -.||...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 444444444544433211 11233344445555554555555555443321 11222 24455555555555555
Q ss_pred cCCHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 037236 687 AGLVEN-GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 687 ~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 757 (953)
.+..+. +...+..+.+ .++...-...+..+++.|.-+.+...+..+...++..+=..-+.++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 554332 2233333322 344555556666666666554443334444444554444444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=82.53 E-value=35 Score=30.41 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=46.4
Q ss_pred cCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
||++......+-.+. .+......-+..+...|+-++-.+++.++... -+|++..+..+.+||.+.|+..++.+++.++
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443332 22333444566677788888888888777653 3677778888888888888888888888877
Q ss_pred HH
Q 037236 701 QK 702 (953)
Q Consensus 701 ~~ 702 (953)
.+
T Consensus 147 Ce 148 (161)
T PF09205_consen 147 CE 148 (161)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.50 E-value=2.9 Score=26.95 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.43 E-value=44 Score=31.40 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=80.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHH--HHHHhhcC
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE-HYACV--VDMLGRAG 724 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--v~~l~~~g 724 (953)
+++.|..++|+..|.++.+.|...-+ ....-........|+...|...|+++-.+..+ |.+. -..-| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 56677888888888888887654322 22334455667888899999999988654332 3221 12222 23466788
Q ss_pred CHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 725 KLDDAFKLIIEMPEEAD---AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
.+++....++.+..+.+ ...-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888877654333 33445677777888899998888888776
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.48 E-value=1.2e+02 Score=35.92 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHHHH-hCCCCC--chHHHHHHHhhH-hcCChhHHHHHHhcCC---CCCccc------HHHHHHHHHcCCChhHH
Q 037236 287 GILVHGLAVK-LGLTRE--LMVNNALVDMYA-KCGFLSEAQILFDKNN---NKNVVS------WNTIIGAFSMAGDVCGT 353 (953)
Q Consensus 287 a~~~~~~~~~-~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~f~~~~---~~d~~~------~~~li~~~~~~g~~~~A 353 (953)
|.+.++.+.+ ..++|. ..++-.+...|. ...+++.|+..+++.. +++... -..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555666663 223332 334455566665 4567888888877532 121111 123344444444444 7
Q ss_pred HHHHHHHHhc
Q 037236 354 FDLLRKMQMK 363 (953)
Q Consensus 354 ~~l~~~m~~~ 363 (953)
+..+++..+.
T Consensus 119 ~~~l~~~I~~ 128 (608)
T PF10345_consen 119 LKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHH
Confidence 7777776554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.41 E-value=48 Score=31.16 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=74.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
+++.++.++|+.-|.++.+.|...=+ .| ..--........|+-..|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Yp----vL------------------------------A~mr~at~~a~kgdta~A 113 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYP----VL------------------------------ARMRAATLLAQKGDTAAA 113 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcch----HH------------------------------HHHHHHHHHhhcccHHHH
Confidence 46677888888888888776543210 00 001123345567888888
Q ss_pred HHHhhhcCC----CCHHHHHH-H--HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 628 RRVFDRLKD----KDVTSWNA-I--IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 628 ~~~~~~~~~----~~~~~~~~-l--i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
...|+++.. |-+.-=.+ + .-.+..+|.+++.....+.+-..| .| -...-..|.-+-.+.|++.+|.++|..
T Consensus 114 V~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 114 VAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 888888762 21110011 1 123567888888877777665543 33 344456677777889999999999998
Q ss_pred HHHh
Q 037236 700 MQKL 703 (953)
Q Consensus 700 m~~~ 703 (953)
+..+
T Consensus 193 ia~D 196 (221)
T COG4649 193 IAND 196 (221)
T ss_pred HHcc
Confidence 8654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.17 E-value=21 Score=34.25 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...|++..+..+..++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444455555555555555555554333322 22344445555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.92 E-value=0.93 Score=46.80 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
|.+++|++.+..... +|...++..-.+++.+.+....|++-+..+++++|+....|-.-+......|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 334444444433322 223334444445556666677788888888888888888888888888888888888888777
Q ss_pred HHHCCCccC
Q 037236 802 MKERGLQKE 810 (953)
Q Consensus 802 m~~~~~~~~ 810 (953)
.-+.++...
T Consensus 208 a~kld~dE~ 216 (377)
T KOG1308|consen 208 ACKLDYDEA 216 (377)
T ss_pred HHhccccHH
Confidence 777666544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.45 E-value=2.3e+02 Score=38.30 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHhc-cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccc
Q 037236 408 VANAFVVAYAKCGSEISAENVFH-GMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLK 486 (953)
Q Consensus 408 ~~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 486 (953)
.+-.+...|...+++|....+.. +...++ ...-|.-....|++..|...|+.+.+.+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 34444558888888887766665 233332 3334555667899999999999998753 233667777777666666
Q ss_pred ccchhhHHHHHHHHhCCCCchh-hHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHH
Q 037236 487 SLHRGKEIHGFVIRNGLEGDSF-TGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTM 544 (953)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 544 (953)
.++...-..+...... .+... .++.=+.+--+.++++....... .++..+|.+.
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 6655544333222211 11111 12222233345566666555544 4566666665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.31 E-value=11 Score=36.20 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLKDK------DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD---TFTFVG 679 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~---~~t~~~ 679 (953)
..+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+....--.+. ...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667899999999999999999998853 234677888888899999999888887765322221 111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHH
Q 037236 680 ILM--ACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 680 ll~--a~~~~g~~~~a~~~~~~m 700 (953)
+.. ++...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223456666666665444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 106/678 (15%), Positives = 195/678 (28%), Gaps = 207/678 (30%)
Query: 326 FDKN----NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMK-----PNEVTVLN 376
F+ K+++S AF D D+ + + + +EE+ + V+
Sbjct: 9 FETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTL 65
Query: 377 VLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRT 436
L L K+ F + L N Y S I E M +R
Sbjct: 66 RLFWT------LLSKQEEMVQK---FVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRM 111
Query: 437 -VSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIH 495
+ + L N + + F + S L+P L L L K
Sbjct: 112 YIEQRDRL-----YNDNQV-----FAKYNVSRLQP----YLKLR---QALLELRPAK--- 151
Query: 496 GFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPV 555
V+ +G+ G +G + ++L + S +V +M+ K + W + S +
Sbjct: 152 -NVLIDGVLG---SGKTWVAL----DVCLSYKVQ-CKMDFK--IFWLNLKNCNSPETVLE 200
Query: 556 EAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR--LGKETHCYALKAILTN------- 606
L ++ + S L S + LR L + + L +L N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAW 259
Query: 607 DAF-VACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKM 665
+AF ++C I L +R K VT + + H
Sbjct: 260 NAFNLSCKI---------LLTTR-------FKQVT--DFLSAATTTH------------- 288
Query: 666 LALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC-----VVDML 720
++L H T T + + L L + ++
Sbjct: 289 ISLDHHSMTLT-------------PDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSII 333
Query: 721 GRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY- 779
+ I + D W + K+ + +L LEP +
Sbjct: 334 A---------ESIRDGLATWDN--W-------KHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 780 ---------------VLVSNIYAGSEKWDDVRMMRQRMKERGL----QKEAGCS----WI 816
+L + DV ++ ++ + L KE+ S ++
Sbjct: 376 DRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 817 ELGGNI------HSFVV----------GDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEA 860
EL + H +V D++ P + + + S IG+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYF------YSHIGH------ 479
Query: 861 VLH--ELEEEEKVNILRGHSEKLAISFGLL--KTTKDLTLRVCKN--LRICVDCHNAAKL 914
H +E E++ + R + + F L K D T L
Sbjct: 480 --HLKNIEHPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 915 ISK-VAEREIVIRDNKRF 931
I + E ++ F
Sbjct: 534 ICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-10
Identities = 119/736 (16%), Positives = 224/736 (30%), Gaps = 218/736 (29%)
Query: 53 QENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSN---DFIIN-------T 102
+ D+ V A + + K V ++ + S D II T
Sbjct: 13 EHQYQYKDILS---VFEDA--FVDNFDC-KDVQDMPKSI--LSKEEIDHIIMSKDAVSGT 64
Query: 103 RLITMYSLCGFPLDSRRVF--DSLKTRNLFQWNALVSGFTKNELYPDVLS-IFVE----L 155
+ ++L + + F + L+ +++ L+S + P +++ +++E L
Sbjct: 65 LRL-FWTLLSKQEEMVQKFVEEVLRIN--YKF--LMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 156 LSDTE-LKPDNFT-FPCVIKACGGIADVSFGSGV--HGMAAKMGLIGDVFVSNALIAMYG 211
+D + N + +K + ++ V G+ G G
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------G-----------SG 162
Query: 212 KCAFVEEMVKLFEVMPERNL-VSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVAT 270
K ++ ++V + + + W ++ +C S + +++M+ + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL-------K-NCNSPETVLEML---QKLLYQIDP 211
Query: 271 VVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN 330
T + + ++ + +H + +L R L+ + Y C L +L
Sbjct: 212 NWTSRS----DHSSNIKLRIHSIQAEL---RRLLKSK----PYENC-LL----VL-L--- 251
Query: 331 NKNVVSWN-TIIGAFSMAGDV-CGTFDLL--RKMQMKEEEMKPNEVTVLNVLTSCSEKSE 386
NV N AF ++ C LL R V + L++ +
Sbjct: 252 --NV--QNAKAWNAF----NLSCKI--LLTTR------------FKQVTDFLSAATTTH- 288
Query: 387 LLSLKELHGYSLRHGFDNDE---LVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNAL 443
+SL DE L+ E+ N +S
Sbjct: 289 -ISLDHH-----SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------LS----- 331
Query: 444 ICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILAC-THLKSLHRGKEIHGFVIRNG 502
I D L D + + L ++I + L+ K +
Sbjct: 332 IIA-ESIRDGLATWDNWKHVNCDKLT-------TIIESSLNVLEPAEYRKMFDRLSV--- 380
Query: 503 LEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFR 562
+ LLSL S V+ +++ SLV K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----------EK---------- 419
Query: 563 RMFSIGVQPCE--ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK 620
QP E ISI SI L LK L N+ + SI+D Y
Sbjct: 420 -------QPKESTISIPSI-----YLE------------LKVKLENEYALHRSIVDHYNI 455
Query: 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG- 679
+ D + + + IG H + E + LF + D F F+
Sbjct: 456 PKTFDSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-----D-FRFLEQ 505
Query: 680 ----ILMACNHAGLVENGL----KYFSQMQKLHAVKPKLEHYAC-VVDMLGRAG------ 724
A N +G + N L Y + PK E ++D L +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAILDFLPKIEENLICS 562
Query: 725 KLDDAFKLIIEMPEEA 740
K D ++ + +EA
Sbjct: 563 KYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 9e-10
Identities = 79/567 (13%), Positives = 174/567 (30%), Gaps = 162/567 (28%)
Query: 16 SLSAKTNNASTEGLHFLQEITTLCEESKSLNK-------ALSLLQENLHNADLKEATGVL 68
+ + S ++++ L +++ K L++ L L+ A VL
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVL 154
Query: 69 LQA---CG-----------HEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFP 114
+ G ++ ++ ++ ++ S + ++ L +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLE-MLQKLLYQIDPN 212
Query: 115 LDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSD----TELKPDNFTFPC 170
SR S + A + K++ Y + L + L + F C
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNA--FNLSC 266
Query: 171 VIKACGGIADVSFGSGVHGMAAKMGLI--GDVFVSNALIAMYGKCAFVEEMVKLFEVMPE 228
I L+ V++ L A ++ P+
Sbjct: 267 KI-----------------------LLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PD 301
Query: 229 RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLP-VCA--GEGNVD 285
E LL+K + C +P +T P + E
Sbjct: 302 --------------------EVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAE---- 335
Query: 286 LGILVHGLAV----------KLGLTRELMVNN----ALVDMYAKCGFLSEAQILFDKNNN 331
+ GLA KL E +N M+ + +F + +
Sbjct: 336 --SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFPPSAH 386
Query: 332 --KNVVS--WNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSEL 387
++S W +I + M V + L K + E++ K + +++ ++ K +L
Sbjct: 387 IPTILLSLIWFDVIKSDVM--VV---VNKLHKYSLVEKQPKESTISIPSIY--LELKVKL 439
Query: 388 LSLKELH-----GYSLRHGFDNDELVANA------FVVAY----AKCGSEISA-ENVFHG 431
+ LH Y++ FD+D+L+ + + + ++ VF
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-- 497
Query: 432 MDSR--------TVSSWNALICGYAQNGDHLKALDYFLQ-MTHSDLEPD--LFSIGSLIL 480
+D R ++WNA + L+ L ++ + +D + + + +I +
Sbjct: 498 LDFRFLEQKIRHDSTAWNAS----GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 481 ACTHLKSLHRGKEIHGFVIRNGLEGDS 507
+L K + ++R L +
Sbjct: 554 KIEE--NLICSK--YTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 9e-08
Identities = 57/396 (14%), Positives = 111/396 (28%), Gaps = 129/396 (32%)
Query: 593 KETHCY----ALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGG 648
C K+IL+ + I + + + R+F L K
Sbjct: 31 DNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSK----------- 74
Query: 649 HGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVE-----------NGLKY 696
+E ++ F + + + F I ++ N +
Sbjct: 75 ------QEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 697 FSQM-----QKLHAVKPKL-----EHYACVVDMLGRAGK-------LDDAFKLIIEMPEE 739
F++ Q ++ L + +LG +GK +K+ +M
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVALDVCLS-YKVQCKMDF- 182
Query: 740 ADAGI-WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV--R 796
I W +L L+M + K L +++P+ SNI R
Sbjct: 183 ---KIFWLNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 797 MMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEW--EEIRGMWG--------RLE 846
+++ + E L +V N+ + R +
Sbjct: 237 LLKSKPYENCL------------------LVLLNV---QNAKAWNAFNLSCKILLTTRFK 275
Query: 847 EQISKIGYKPYTEAVLHE----LEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCK-N 901
+ + T L L +E ++L + L +DL V N
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRP------QDLPREVLTTN 326
Query: 902 LRICVDCHNAAKLISKVAEREIVIRDNK-RFHHFRD 936
R +S +AE IRD + +++
Sbjct: 327 PR----------RLSIIAES---IRDGLATWDNWKH 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 67/452 (14%), Positives = 131/452 (28%), Gaps = 132/452 (29%)
Query: 12 KSSLSLSA----KTNNASTEGLHFLQEITTL--CEESKSLNKALSLLQENLHNADLKEAT 65
K+ ++L K + +L L C +++ L +LQ+ L+ D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWL----NLKNCNSPETV---LEMLQKLLYQIDPN--- 212
Query: 66 GVLLQACGHEKDIEIGKRVHELIS------ASTQFSNDFII-----NTRLITMYSL-CGF 113
H +I++ R+H + + S + N ++ N + ++L C
Sbjct: 213 --WTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 114 PLDSR--RVFDSL--KTRNLFQWNALVSGFTKNEL----------------------YPD 147
L +R +V D L T + T +E+ P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 148 VLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALI 207
LSI E + D DN+ K + L +V
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDK--------------LTTIIESSL--NVLEPAEYR 372
Query: 208 AMYGKCAFVEEMVKLFEVMPERNLVS-WNSIICGSSENGFS-CESFDLLIKMMGCEEGFI 265
M+ + + + P L W +I + + L+ K
Sbjct: 373 KMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--------- 419
Query: 266 PDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELM--VNNALVDMY-AKCGFLSEA 322
+ I + + ++L + E ++ ++VD Y F S+
Sbjct: 420 ----------------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 323 QILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRK-------MQMKEEEMKPNEVTVL 375
+ IG + L R ++ K +
Sbjct: 464 ---LIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQK----------IR 508
Query: 376 NVLTSCSEKSELLS-LKELHGYSLRHGFDNDE 406
+ T+ + +L+ L++L Y + DND
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYK-PYICDNDP 539
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 4e-08
Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 9/178 (5%)
Query: 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619
L P E + +L +L + + +A L+ +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 620 KCGCLEQSRRVFDRLKDK-------DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672
L + + + + +NA++ G G KE + + + G P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 673 DTFTFVGILMACNHAGLVENGL-KYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729
D ++ L + + QM + L A ++ RA L
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF-TAVLLSEEDRATVLKAV 255
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 1e-07
Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 8/182 (4%)
Query: 362 MKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGS 421
++ P E + +L K L + G + + AF
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 422 EISAENVFHGMDSR-------TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFS 474
A ++ + T+ +NA++ G+A+ G + + + + L PDL S
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 475 IGSLILACTHL-KSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEM 533
+ + + + + + GL+ + LLS + +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 534 ED 535
Sbjct: 263 SL 264
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 7e-05
Identities = 18/162 (11%), Positives = 51/162 (31%), Gaps = 12/162 (7%)
Query: 266 PDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQIL 325
P + +L G+ ++D+ G + L+ + A L A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 326 FDKNNNK-------NVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVL 378
++ + + +N ++ ++ G +L +K+ + P+ ++
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF--MVKDAGLTPDLLSY-AAA 206
Query: 379 TSCSEKSELL--SLKELHGYSLRHGFDNDELVANAFVVAYAK 418
C + + +++ + G L + +
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 8e-05
Identities = 21/175 (12%), Positives = 52/175 (29%), Gaps = 8/175 (4%)
Query: 470 PDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVL 529
P + L+ SL + G + L G ++ + ++ A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 530 FDEMEDK-------SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582
+ +L +N ++ G+++ E + + + G+ P +S + L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 583 CSQLS-ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD 636
+ + + L A ++ + L+ +V
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 12/189 (6%)
Query: 599 ALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTS----WNAIIGGHGIHGY 654
A+ +L + + + D E+ +++RL + + +
Sbjct: 90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 149
Query: 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714
K +F+K LM + K F K + P+
Sbjct: 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VL 207
Query: 715 CVVDMLGRAGKLDDAFKLI------IEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTL 768
+D L + ++ L +P E IW+ L G L KV K
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
Query: 769 LELEPDKAE 777
++ E
Sbjct: 268 FTAFREEYE 276
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 54/449 (12%), Positives = 132/449 (29%), Gaps = 46/449 (10%)
Query: 375 LNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS 434
+LT + + + L + L +D N E +A +
Sbjct: 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG-ALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 435 RTVSSWNALICG--YAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGK 492
+ + + G Y + +A + + + D + +++ L +
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWD 253
Query: 493 EIHGFVIRNGLEGDSFTGISL----LSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIA 546
+ + D+ SL L+ H ++ A + KS
Sbjct: 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313
Query: 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN 606
++ + + ++ I P + + + A L + + + + +
Sbjct: 314 TLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLAS--LHESGEKNKLYLISNDLVDRH 369
Query: 607 -DAFVACSII-DMYAKCGCLEQSRRVFDR---LKDKDVTSWNAIIGGHGIHGYGK--EAI 659
+ V + Y + ++RR F + + + +W H G+ +AI
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF--AHSFAIEGEHDQAI 427
Query: 660 ELFEKMLALGHKPDTFT-FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718
+ L T ++ + M G + +Y L P L +
Sbjct: 428 SAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--LNELGV 483
Query: 719 MLGRAGKLDDA---FKLIIEMPEEAD------AGIWSSLLRSCRTYG----ALKMGEKVA 765
+ + A F+ + + ++ A W++L + R A+ +
Sbjct: 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG- 542
Query: 766 KTLLELEPDKAENYVLVSNIYAGSEKWDD 794
L L + A + ++ +Y +
Sbjct: 543 ---LLLSTNDANVHTAIALVYLHKKIPGL 568
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.56 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.16 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.19 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.17 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.12 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.98 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.97 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.89 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.88 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.63 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.48 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.13 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.69 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.26 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.93 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.96 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.25 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.15 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.68 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.12 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.69 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.43 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.36 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.83 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.95 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 84.72 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.25 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 83.61 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 80.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.07 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=393.40 Aligned_cols=495 Identities=9% Similarity=-0.043 Sum_probs=357.8
Q ss_pred hhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHH
Q 037236 210 YGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGIL 289 (953)
Q Consensus 210 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 289 (953)
+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++| . +..||..++..+..+|...|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~--~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKV--L--DITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH--H--HHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHH--H--hhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 456788888899999999899999999999999999999999999999 4 466888999999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHcCCCh
Q 037236 290 VHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK-------------------NVVSWNTIIGAFSMAGDV 350 (953)
Q Consensus 290 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------d~~~~~~li~~~~~~g~~ 350 (953)
++..+... +++..+++.++.+|.++|++++|+++|+++... ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987644 678999999999999999999999999964433 478999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHH--HHHH-HHHHHHcCCCCchhHHHHHHHHHHhcCCcccHH
Q 037236 351 CGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLS--LKEL-HGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 351 ~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
++|+++|++|.+.+ |+.. .+..+...+...+.... ...+ +..+...+..+...+++.++.+|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALMVD----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHHHC----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999999998853 5443 33333333332222211 1111 444444444555667777788888999999999
Q ss_pred HHhccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCC
Q 037236 427 NVFHGMDS--RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 427 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
++|+++.. +++.+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~------------------------- 346 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL------------------------- 346 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH-------------------------
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH-------------------------
Confidence 99988876 688889999999999999999999999887654 22344444444
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+. .|+
T Consensus 347 ----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--------- 405 (597)
T 2xpi_A 347 ----------ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQ--------- 405 (597)
T ss_dssp ----------HHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred ----------HHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC---------
Confidence 444444555555555544432 23445555555566666666666666555542 221
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 658 (953)
+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|
T Consensus 406 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 406 -------------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666666666666666554 34667778888888888888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHH
Q 037236 659 IELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK--LEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 659 ~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
+++|++|.+. .| +..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 461 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888774 34 67778888888888888888888888886543 55676 67888888888888888888888
Q ss_pred HHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 733 IIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 733 ~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
++++.. ++++.+|..++.+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 887653 44788999999999999999999999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=385.56 Aligned_cols=479 Identities=9% Similarity=-0.028 Sum_probs=401.9
Q ss_pred hhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHH
Q 037236 312 MYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 312 ~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~ 391 (953)
.+.+.|.+..+...|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 355677888888999999989999999999999999999999999999985 5688899999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC-------------------ChhhHHHHHHHHHhcCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR-------------------TVSSWNALICGYAQNGD 452 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 452 (953)
.++..+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987543 678899999999999999999999999965433 47899999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCcc-hHHHHHHhhccccccc--hhhHH-HHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHH
Q 037236 453 HLKALDYFLQMTHSDLEPDLF-SIGSLILACTHLKSLH--RGKEI-HGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARV 528 (953)
Q Consensus 453 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 528 (953)
+++|+++|++|.+.+ |+.. .+..+...+...+..+ .+..+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999853 4433 3444444333332222 12222 4455555666677788889999999999999999
Q ss_pred HHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC
Q 037236 529 LFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN 606 (953)
Q Consensus 529 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 606 (953)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|+.++|.+++..+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999987 789999999999999999999999999999875 3477889999999999999999999999998654 34
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+. .| +..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 78899999999999999999999999875 467889999999999999999999999999985 45 7899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM-------PEEAD--AGIWSSLLRSCR 753 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~-------~~~~~--~~~~~~ll~~~~ 753 (953)
+|.+.|++++|.++|+++.+.. ..+...|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999998742 234788999999999999999999999987 33566 679999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.+|++++|...++++++++|+++.+|..++++|...|+|++|.+.++++.+
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=240.01 Aligned_cols=370 Identities=12% Similarity=0.107 Sum_probs=269.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
...+.+.|++++|++.+.++.+. .|+.. ..+..+...+.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~----~p~~~----------------------------------~~~~~l~~~~~~~~ 47 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ----EPDNT----------------------------------GVLLLLSSIHFQCR 47 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTCH----------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCH----------------------------------HHHHHHHHHHHHcC
Confidence 34556677888888888777653 34432 22233333444444
Q ss_pred CcccHHHHhccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCc-chHHHHHHhhccccccchhhHHHH
Q 037236 421 SEISAENVFHGMD---SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDL-FSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 421 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
++++|...++... ..+..+|..+...|.+.|++++|+..|+++... .|+. .++..+..++...|+++.|.+.+.
T Consensus 48 ~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444443321 224556666677777777777777777776653 2332 345555555555666666666665
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE 573 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 573 (953)
.+++..+. +...+..+...|...|++++|.+.|+++.+ .+..+|+.+...|.+.|++++|+..|+++.+. .|+
T Consensus 126 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~- 201 (388)
T 1w3b_A 126 SALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN- 201 (388)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT-
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-
Confidence 55554322 334455566666777777777777776643 23456777777777777777777777777654 232
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHG 650 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 650 (953)
+...+..+...|...|++++|...|++.. +.+..+|..+...|.
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 45567777888888999999999988765 456889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
..|++++|++.|+++++ ..| +..++..+..++...|++++|...|+++.+.. .++...+..+..++.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 467 56789999999999999999999999998742 23478899999999999999999
Q ss_pred HHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 730 FKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 730 ~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
.+.++++.. +.+..+|..++..+...|++++|...++++++++|+++.+|..++.+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999998865 34578999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-24 Score=235.91 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=292.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCcc-hHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 444 ICGYAQNGDHLKALDYFLQMTHSDLEPDLF-SIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 444 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
...+.+.|++++|++.+.++.+. .|+.. .+..+...+...++++.+...+...++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677778888777777664 34433 34444455666777777777777777654 3366778888888999999
Q ss_pred hhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchHHHHHHHHH
Q 037236 523 SSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILSACSQLSALRLGKETHCY 598 (953)
Q Consensus 523 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~ 598 (953)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+... +..+-..+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999988753 3 4457888899999999999999999998875 465544 44555677788999999999988
Q ss_pred HHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 037236 599 ALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DT 674 (953)
Q Consensus 599 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~ 674 (953)
+.+.... +...+..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++... ..| +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 8876433 56788999999999999999999999886 45677899999999999999999999999998 567 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
.++..+..++...|++++|...|+++.+ +.|+ ...|..++.+|.+.|++++|++.++++.. +++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 8899999999999999999999999977 5565 77899999999999999999999998754 5678899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...|+++.|...+++++++.|+++.++..++.+|...|++++|...++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988865
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=250.21 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=173.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc---------chHHHHHHHHHHHHcCCCCCcc
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS---------ALRLGKETHCYALKAILTNDAF 609 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 609 (953)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 68999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
+.|++++|.++|++|. ..++.|+..+|+.+++.+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999994 689999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=248.77 Aligned_cols=136 Identities=9% Similarity=-0.032 Sum_probs=123.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 552 KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
+..++|.++|++|...|+.||.+||++++.+|++.|++++|.++++.|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 34577888888888888888888888888888888888888888888888888899999999999999999999999999
Q ss_pred hhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 632 DRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 632 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9986 6899999999999999999999999999999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=227.98 Aligned_cols=336 Identities=10% Similarity=0.020 Sum_probs=236.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+.. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34556666666666666666666666666531 223444444444555555555555555555444322 3455566666
Q ss_pred HHHhcCChhHHHHHHHhcccCCc------ccHHHHHHH------------HHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSL------VSWNTMIAG------------YSQNKLPVEAIVLFRRMFSIGVQPCEISIV 577 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 577 (953)
+|.+.|++++|.+.|+++.+.++ ..|..++.. +.+.|++++|+..|+++.+. .|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~------ 174 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CV------ 174 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------
Confidence 66666677777666666654222 344444332 55556666666666555543 12
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC
Q 037236 578 SILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 578 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 654 (953)
.+..++..++.+|.+.|++++|...|+++. +.+..+|..++..|...|+
T Consensus 175 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 175 ----------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred ----------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 256778888999999999999999999876 5678999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTF-TFVGI------------LMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDM 719 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~ 719 (953)
+++|+..|+++.. ..|+.. .+..+ +.+|.+.|++++|..+|+++.+..+-.|. ..+|..++.+
T Consensus 227 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999998 567543 34443 78999999999999999999874322222 4588999999
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH------------HH
Q 037236 720 LGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS------------NI 785 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~ 785 (953)
+.+.|++++|++.++++.. +.++.+|..++.+|...|+++.|...++++++++|+++.++..++ +.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 9999999999999998753 447899999999999999999999999999999999999999999 56
Q ss_pred HHhcC--CchHHHHHHHHHHHCCCccCC
Q 037236 786 YAGSE--KWDDVRMMRQRMKERGLQKEA 811 (953)
Q Consensus 786 y~~~g--~~~~a~~~~~~m~~~~~~~~~ 811 (953)
|...| ++....++++.+++..++..|
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 77777 333333344444433333333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-21 Score=221.80 Aligned_cols=258 Identities=12% Similarity=-0.010 Sum_probs=184.0
Q ss_pred cCChhHHHHHHHhccc----------------C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 520 CEKSSSARVLFDEMED----------------K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
.|++++|...|+++.+ + +...|..+...+...|++++|+..|+++.+.. |+...+..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 6777888777776544 1 23466777777888888888888888877754 335566666667
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
+...|+++.|...+..+.+.... +...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777665432 55667777778888888888888877664 345667777777788888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhh---cCCHHHHHH
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGR---AGKLDDAFK 731 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~---~g~~~eA~~ 731 (953)
..|+++.+. .| +..++..+...+...|++++|..+++.+.+...-.|+ ...+..+...|.+ .|++++|.+
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 888887773 44 4566777777788888888888888777664333332 2367777777777 788888888
Q ss_pred HHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 732 LIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 732 ~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
.++++.. +.+..+|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7776543 33566777777777888888888888888888888777666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-17 Score=193.44 Aligned_cols=378 Identities=11% Similarity=0.083 Sum_probs=290.3
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcC
Q 037236 374 VLNVLTSCSEKSELLSLKELHGYSLRHG--FDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNG 451 (953)
Q Consensus 374 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 451 (953)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556667778888888888888887432 223456667777776666 4455555555544323 455778888999
Q ss_pred ChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHH
Q 037236 452 DHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFD 531 (953)
Q Consensus 452 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 531 (953)
.+++|..+|++... .....+.++ ...+++++|.++...+ .+..+|..+..++.+.|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998521 111122222 2677888888887754 357788999999999999999999997
Q ss_pred hcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHH
Q 037236 532 EMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVA 611 (953)
Q Consensus 532 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 611 (953)
+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.+.++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 75 677888999999999999999999999877654 44434445888899998887644442 1 2355666
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~ 691 (953)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|...|.+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 77999999999999999999985 58999999999999999999999876 35689999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhc--CChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTY--GALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 767 (953)
.|...... +..+++.+..++..|.+.|.++||+.+++.... + .....|.-|.-.+.+. +++.++.+.+..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99887543 345567788999999999999999999988754 3 3345676666666554 477788888888
Q ss_pred HhccCC-----CCcchHHHHHHHHHhcCCchHHHH
Q 037236 768 LLELEP-----DKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 768 ~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
-+.+.| ++...+.-+.-+|.+.|+|+.|..
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888777 788889999999999999999984
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-20 Score=215.98 Aligned_cols=426 Identities=11% Similarity=-0.002 Sum_probs=300.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVV 414 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 414 (953)
..|......+.+.|++++|+..|+++... .|+..++..+..++...|+++.|...+..+++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 69 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------------- 69 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------------
Confidence 34666777888888888888888888774 3555555555555555555555555555554432
Q ss_pred HHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHH
Q 037236 415 AYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEI 494 (953)
Q Consensus 415 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 494 (953)
..+...|..+...|.+.|++++|+..|+++...+ +++......++..+........+.+.
T Consensus 70 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (514)
T 2gw1_A 70 -------------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEK 129 (514)
T ss_dssp -------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 2245667777778888888888888888887764 23444444444444433333333333
Q ss_pred HHHHHHhCCCCchhhHhhHHH---HHHhcCChhHHHHHHHhcc---------cC-CcccHHHHHHHHHh---cCChhHHH
Q 037236 495 HGFVIRNGLEGDSFTGISLLS---LYMHCEKSSSARVLFDEME---------DK-SLVSWNTMIAGYSQ---NKLPVEAI 558 (953)
Q Consensus 495 ~~~~~~~g~~~~~~~~~~li~---~y~~~g~~~~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~ 558 (953)
+..+...+..|+......... ..........+...+.... .+ +...|..+...+.. .|++++|+
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 322222111111110000000 0000011111111111111 11 23344445554554 89999999
Q ss_pred HHHHHHHH-----cCCCCC--------hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 037236 559 VLFRRMFS-----IGVQPC--------EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 559 ~~~~~m~~-----~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
..|+++.+ ....|+ ..++..+...+...|+++.|...+..+.+.... ...+..++..|...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 99999988 322332 345666777888999999999999999987655 888899999999999999
Q ss_pred HHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 626 QSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 626 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
+|...|+++. +.+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999876 446788999999999999999999999999984 56 56788899999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHh---cCChhHHHHHHHHHh
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRT---YGALKMGEKVAKTLL 769 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~ 769 (953)
+. .|+ ...+..+...|.+.|++++|.+.++++.. .++ ..+|..+...+.. .|+++.|...+++++
T Consensus 366 ~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 366 RK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 74 343 67889999999999999999999987743 222 3489999999999 999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 770 ELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 770 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++|+++.++..++.+|...|++++|...+++..+
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888766
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-16 Score=184.89 Aligned_cols=312 Identities=10% Similarity=0.110 Sum_probs=210.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC--CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhc
Q 037236 443 LICGYAQNGDHLKALDYFLQMTHSDL--EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHC 520 (953)
Q Consensus 443 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 520 (953)
.+.+|...|.+.+|++++++....+- .-+...-+.++.+..+. +..++.++...+.+ ....-+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhC
Confidence 34566677777777777777763311 01112223333333333 44444444433321 1123355666677
Q ss_pred CChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 521 EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+-.++...|.+++|...+...
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 788888888877641 111222222 2567777777777654 23566777777888888888888777543
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
.|...|..++..+.+.|++++|.+.|.... .+++...+.++.+|++.++.++ ++-| ++ .|+...+.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQ 1199 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHH
Confidence 366677778888888888888888887654 2333333347777888877774 3333 22 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 758 (953)
.+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHH
Confidence 8899999999999999999875 36889999999999999999999886 5678999999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.+|..+... +.. ++..+..+++.|.+.|.|++|+.+.+..
T Consensus 1267 ~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888765 333 4556678999999999999999988543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=211.31 Aligned_cols=415 Identities=12% Similarity=0.038 Sum_probs=209.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 337 WNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|+++.|.+.+..+++.. +.+..++..+..+|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4444555555555555555555555432 2233344444444444445555544444444432 22455566666666
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC------CCCCCcchHHHHHHhhccccccch
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS------DLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~------------- 169 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS------------- 169 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-------------
Confidence 6777777777666432 222222333344455555566777777776543 11222222222
Q ss_pred hhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc---cHHHHHHHHHh--------cCChhHHHH
Q 037236 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV---SWNTMIAGYSQ--------NKLPVEAIV 559 (953)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~ 559 (953)
|....+.+.+...+......+.. .+..+...+.. .|++++|+.
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 170 --------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp --------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22222222222222222221111 11111111111 123444444
Q ss_pred HHHHHHHcCCCCCh--------hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 560 LFRRMFSIGVQPCE--------ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 560 ~~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
+|+++.+. .|+. .++..+-..+...|+++.|...+..+.+... +...+..+...|.+.|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHH
Confidence 44444432 2221 1122222333334444444444444444322 2444555555555666666666666
Q ss_pred hhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 037236 632 DRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK 707 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 707 (953)
+++. +.+..+|..+...|...|++++|++.|+++.+. .| +..++..+..++...|++++|..+|+.+.+. .
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 374 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---F 374 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 5543 334556666666666677777777777766663 34 3456666666666777777777777666553 2
Q ss_pred CC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC----ChhHHHHHHHHHHhc----------CChhHHHHHHHHH
Q 037236 708 PK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EA----DAGIWSSLLRSCRTY----------GALKMGEKVAKTL 768 (953)
Q Consensus 708 p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~ 768 (953)
|+ ...+..+..+|.+.|++++|.+.++++.. .+ ....+..+...+... |+++.|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 33 45666666677777777777766665432 11 111233344455555 7777777777777
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 769 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++++|+++.++..++.+|...|++++|...++...+
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777777777777777777777777777666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-19 Score=205.05 Aligned_cols=443 Identities=10% Similarity=-0.032 Sum_probs=272.8
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHh
Q 037236 233 SWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDM 312 (953)
Q Consensus 233 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 312 (953)
.|..+...+.+.|++++|++.|+++. .. .+.+..++..+..++...|+++.|...+..+++.. +.+...+..+...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al--~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAI--EL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHH--HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH--hh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45556666777777777777777762 21 23345566666666666666777776666666654 3345566667777
Q ss_pred hHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHH
Q 037236 313 YAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKE 392 (953)
Q Consensus 313 ~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 392 (953)
|...|++++|.+.|+.+ ..+....+..+..+...+...+|+..++++.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~----~~~~-------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD----EGRG-------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC----cccc--------------------
Confidence 77777777777777532 2222222233344444455566666666664421 1000
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChh---hHHHHHHHHHhc--------CChHHHHHHHH
Q 037236 393 LHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVS---SWNALICGYAQN--------GDHLKALDYFL 461 (953)
Q Consensus 393 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~ 461 (953)
....|+ ...+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+
T Consensus 158 -------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 158 -------SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp --------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 001111 22233344445555555555555444332 222222222211 34555555555
Q ss_pred HhhhCCCCCCcc-hHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCccc
Q 037236 462 QMTHSDLEPDLF-SIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVS 540 (953)
Q Consensus 462 ~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 540 (953)
++.+. .|+.. .+..+ ..+
T Consensus 227 ~~l~~--~p~~~~~~~~~-----------------------------------------------------------~~~ 245 (537)
T 3fp2_A 227 SLLSA--NTVDDPLRENA-----------------------------------------------------------ALA 245 (537)
T ss_dssp HHHC----CCCHHHHHHH-----------------------------------------------------------HHH
T ss_pred HHHHH--CCCcchhhHHH-----------------------------------------------------------HHH
Confidence 55542 12111 00000 012
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 037236 541 WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK 620 (953)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 620 (953)
|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.... +..++..+...|.+
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence 333344455555555555555555553 344445555555556666666666666655554322 56778889999999
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999876 456788999999999999999999999999984 56 567888999999999999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhhc----------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 697 FSQMQKLHAVKPK----LEHYACVVDMLGRA----------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 697 ~~~m~~~~~~~p~----~~~~~~lv~~l~~~----------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
|+.+.+..+-.+. ...+..+..+|.+. |++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9998764422222 22244556778888 999999999998754 4567899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~ 781 (953)
|...+++++++.|+++.....
T Consensus 481 A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-19 Score=201.03 Aligned_cols=303 Identities=14% Similarity=0.036 Sum_probs=221.1
Q ss_pred CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHH
Q 037236 471 DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAG 547 (953)
Q Consensus 471 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 547 (953)
+...+..+...+.+.|+++.|..++..+++... .+...+..+..+|.+.|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344455555555556666666666665555432 2345555555566666666666666655542 233455555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCE----ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC 623 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 623 (953)
|.+.|++++|++.|+++.+. .|+. ..+..+...+.. ..+..+...|.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 66666666666666655543 2322 122222211100 112234556889999
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
+++|...|+++. +.+...|..++..|...|++++|++.|+++.+. .| +..++..++.++...|++++|..+|+.
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999876 557889999999999999999999999999984 45 678899999999999999999999999
Q ss_pred HHHhcCCCCC-hhHHHHH------------HHHHhhcCCHHHHHHHHHhCCC-CCC-----hhHHHHHHHHHHhcCChhH
Q 037236 700 MQKLHAVKPK-LEHYACV------------VDMLGRAGKLDDAFKLIIEMPE-EAD-----AGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 700 m~~~~~~~p~-~~~~~~l------------v~~l~~~g~~~eA~~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~ 760 (953)
+.+ +.|+ ...+..+ +..+.+.|++++|.+.++++.. .|+ ...|..++..+...|+++.
T Consensus 237 ~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 976 4555 4444444 8899999999999999988753 344 3478888999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++.+.+
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988866
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-17 Score=179.54 Aligned_cols=302 Identities=15% Similarity=0.018 Sum_probs=220.2
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHH
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYS 549 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 549 (953)
..+..+...+...|+++.|...+..+++..+. +...+..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455555666667777777777776665432 455666666667777777777777766543 23456666666677
Q ss_pred hcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 037236 550 QNKLPVEAIVLFRRMFSIGVQP---CEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQ 626 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 626 (953)
+.|++++|+..|++..+. .| +.......+. .... ...+..+...|...|++++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHH
Confidence 777777777777766654 33 1111111000 0000 1112334678889999999
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
|...|+++. +.+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999876 557788999999999999999999999999984 56 678899999999999999999999999976
Q ss_pred hcCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhCCC-CCC-h----hHHHHHHHHHHhcCChhHHHH
Q 037236 703 LHAVKPK-LEHYA------------CVVDMLGRAGKLDDAFKLIIEMPE-EAD-A----GIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 703 ~~~~~p~-~~~~~------------~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~----~~~~~ll~~~~~~g~~~~a~~ 763 (953)
. .|+ ...+. .+...+.+.|++++|.+.++++.. .|+ . ..|..+...+...|+++.|..
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4 344 23222 236779999999999999987653 343 3 235567788899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-17 Score=178.17 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHH
Q 037236 437 VSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSL 516 (953)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (953)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.... +...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445566666666777777777777666542 223455556666666667777777777766665432 45667778888
Q ss_pred HHhcCChhHHHHHHHhcccCCc------ccHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 037236 517 YMHCEKSSSARVLFDEMEDKSL------VSWNTM------------IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS 578 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 578 (953)
|.+.|++++|...|++..+.++ ..|..+ ...+...|++++|++.|+++.+. .|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------ 152 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVW------ 152 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------
Confidence 8888888888888887764332 233333 46677778888888888777664 232
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh
Q 037236 579 ILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG 655 (953)
Q Consensus 579 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 655 (953)
+...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++
T Consensus 153 ----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 153 ----------------------------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred ----------------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45567778888899999999999998775 45778899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHH
Q 037236 656 KEAIELFEKMLALGHKPD-TFTFV------------GILMACNHAGLVENGLKYFSQMQKLHAVKPKL--EHYACVVDML 720 (953)
Q Consensus 656 ~~A~~l~~~m~~~g~~P~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l 720 (953)
++|+..|++..+ ..|+ ..++. .+...+...|++++|...++.+.+..+-.|.. ..+..+..+|
T Consensus 205 ~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999999998 4564 33222 33667889999999999999998744322221 3456688999
Q ss_pred hhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 721 GRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.+.|++++|.+.+++... +.++.+|..+...+...|+++.|...++++++++|+++.....|..++...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999988754 347889999999999999999999999999999999999988888876643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-17 Score=174.89 Aligned_cols=286 Identities=11% Similarity=-0.012 Sum_probs=229.8
Q ss_pred CCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 504 EGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 504 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
..+..+...+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34555666777777888888888888887754 244566667777888888888888888887753 23455666666
Q ss_pred HHhcccc-chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH
Q 037236 581 SACSQLS-ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 581 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 656 (953)
..+...| ..+.|...+..+.+.... +...+..+...|...|++++|...|+++. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777778 788888888887765433 56778899999999999999999999876 445677888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-------CCChhHHHHHHHHHhhcCCHHH
Q 037236 657 EAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV-------KPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+|++.|+++.+ ..| +..++..+...+...|++++|..+++.+.+...- ......+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 456 6788899999999999999999999999774321 2236788999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCch
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY-AGSEKWD 793 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~ 793 (953)
|.+.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+| ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999988753 456789999999999999999999999999999999999999999988 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-16 Score=168.43 Aligned_cols=261 Identities=12% Similarity=0.046 Sum_probs=227.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|+.+++...+..+.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888899999999999999999998864 334456666778888999999999999999886543 678889999
Q ss_pred HHHHhcC-CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 037236 616 DMYAKCG-CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV 690 (953)
Q Consensus 616 ~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~ 690 (953)
..|...| ++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999876 446788999999999999999999999999984 45 467788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-----------CCChhHHHHHHHHHHhcCCh
Q 037236 691 ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-----------EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-----------~~~~~~~~~ll~~~~~~g~~ 758 (953)
++|..+++.+.+ +.|+ ...+..+..+|.+.|++++|.+.++++.. +..+.+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999976 4455 78889999999999999999999887642 23467999999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+.|...+++++++.|+++.++..++.+|...|++++|...+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=168.96 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=85.8
Q ss_pred ccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHH
Q 037236 212 KCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVH 291 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 291 (953)
+.|++++|.+.+++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5688999999999997665 8999999999999999999999765 68889999999999999999999988
Q ss_pred HHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCch
Q 037236 292 GLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNE 371 (953)
Q Consensus 292 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~ 371 (953)
...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence 888774 45678889999999999999999988864 67789999999999999999999999865
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcC
Q 037236 372 VTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNG 451 (953)
Q Consensus 372 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 451 (953)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRG 221 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCC
Confidence 25777888888888888888777766 367788888888888888888877766654 34444456777888888
Q ss_pred ChHHHHHHHHHhhhC
Q 037236 452 DHLKALDYFLQMTHS 466 (953)
Q Consensus 452 ~~~~A~~~~~~m~~~ 466 (953)
++++|+.+++..+..
T Consensus 222 ~~eEai~lLe~aL~l 236 (449)
T 1b89_A 222 YFEELITMLEAALGL 236 (449)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhCC
Confidence 888888888877643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=170.64 Aligned_cols=321 Identities=12% Similarity=0.108 Sum_probs=144.3
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHH
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
-+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999998665 4899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4457888899999999999999888875 367779999999999999999999999876 378
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChH
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 656 (953)
..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888889999999888888877 278888889999999999999988777655 34444456888899999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhhcCCHH
Q 037236 657 EAIELFEKMLALGHKP-DTFTFVGILMACN--HAGLVENGLKYFSQMQKLHAVKP------KLEHYACVVDMLGRAGKLD 727 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~l~~~g~~~ 727 (953)
+|+.++++.+. ..| ....|..+.-+++ +.+++.+.++.|. +.-++.| +..+|.-++.+|...+.++
T Consensus 225 Eai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999988876 445 3344444444444 4555666666554 3334555 3677888999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 728 DAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 728 eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.|...+-+-+ |++.--..+.....+-.|.|.--++..-.++-.|
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 8887665432 2222223333333444444444444444443333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=173.55 Aligned_cols=275 Identities=11% Similarity=0.023 Sum_probs=207.3
Q ss_pred hcCChhHHHH-HHHhccc---C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 519 HCEKSSSARV-LFDEMED---K----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 519 ~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 6664432 1 24456677777777777777777777777653 234455666666777777777
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHH---------------HHHHHHhc
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNA---------------IIGGHGIH 652 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~---------------li~~~~~~ 652 (953)
.|...+..+.+.... +...+..++..|.+.|++++|...|+++. +.+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777777665432 56777888888888888888888888765 222222221 13334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPD---TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...|..+..+|.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999984 554 788999999999999999999999999773 455 7789999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCchHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-----------AENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 795 (953)
|++.++++.. +.+..+|..+...+...|+++.|...+++++++.|++ +.++..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999988753 4567899999999999999999999999999999988 88999999999999999999
Q ss_pred HHHHH
Q 037236 796 RMMRQ 800 (953)
Q Consensus 796 ~~~~~ 800 (953)
..+.+
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-15 Score=169.79 Aligned_cols=365 Identities=9% Similarity=0.001 Sum_probs=270.9
Q ss_pred chhHHHHHHHHHHh----cCCcccHHHHhccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 405 DELVANAFVVAYAK----CGSEISAENVFHGMDS-RTVSSWNALICGYAQ----NGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 405 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555555 5666666666655432 245566666666666 667777777777766654 33344
Q ss_pred HHHHHhhcc----ccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHh----cCChhHHHHHHHhccc-CCcccHHHHHH
Q 037236 476 GSLILACTH----LKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMH----CEKSSSARVLFDEMED-KSLVSWNTMIA 546 (953)
Q Consensus 476 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 546 (953)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 566777777777766655 45566667777776 6788888888887654 45667777777
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 547 GYSQ----NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ----LSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 547 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
.|.+ .+++++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7877 788888888888887764 34455555555543 677888888888877764 556777788888
Q ss_pred Hh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037236 619 AK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g 688 (953)
.. .++.++|...|++.. ..+...+..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 88 899999999999876 34677888888888887 89999999999999864 4567777888887766
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCC
Q 037236 689 ---LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGA 757 (953)
Q Consensus 689 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~ 757 (953)
++++|.++|++..+. .++..+..|..+|.. .+++++|.+.+++.....++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999999763 457788889999988 89999999999988766778899999999887 899
Q ss_pred hhHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 037236 758 LKMGEKVAKTLLELEPD---KAENYVLVSNIYAG 788 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 788 (953)
.++|...++++++.+|+ ++.+...|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999954 78787878777664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=159.31 Aligned_cols=219 Identities=10% Similarity=0.024 Sum_probs=121.7
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
..+|...|+++.|...++....++..++..+...+...|+.++|++.++++...+..|+
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~--------------------- 99 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT--------------------- 99 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS---------------------
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC---------------------
Confidence 34455555555555544443333334444455555555555555555555554443343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .|+
T Consensus 100 -------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 100 -------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 344455556677777777777777776 456666777777777777777777777777763 454
Q ss_pred HHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHH
Q 037236 674 TFTF---VGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~ 750 (953)
.... ..++..+...|++++|..+|+++.+. . ++++.+|+.+..
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~-------------------------------p~~~~~~~~la~ 208 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---C-------------------------------SPTLLLLNGQAA 208 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---S-------------------------------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---C-------------------------------CCcHHHHHHHHH
Confidence 3211 11222233345666666666666543 1 234445555555
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHHH
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV-RMMRQRMKE 804 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 804 (953)
++...|++++|+..++++++++|+++.++..++.++...|+++++ .++++++.+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555556666666666666666666666666666666543 345444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-14 Score=163.77 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHh-------cCCHH-------HHHHHhhhcCC----CCHHHHHHHHHHHHhc
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAK-------CGCLE-------QSRRVFDRLKD----KDVTSWNAIIGGHGIH 652 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~----~~~~~~~~li~~~~~~ 652 (953)
.+..+++.+++... .+..+|..++..+.+ .|+++ +|..+|++... .+...|..++..+...
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 55667777776532 367788888888876 68877 89999998752 3578899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM-LGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~~~g~~~e 728 (953)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 56743 4788888888889999999999999876 3343 3333333222 346899999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE----NYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|.++|++... +.++.+|..++......|+.+.|..+++++++..|.++. .+..........|+.+.+..+.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999987653 346789999999999999999999999999998877665 6666778888899999999988877
Q ss_pred HH
Q 037236 803 KE 804 (953)
Q Consensus 803 ~~ 804 (953)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-16 Score=168.85 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=181.3
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+. .|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p-------------- 130 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QP-------------- 130 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--------------
Confidence 344455555555555555555555432 23345555555555555555555555555443 12
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-----------HHHHHHHHHHHHhc
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KD-----------VTSWNAIIGGHGIH 652 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~ 652 (953)
.+...+..++..|.+.|++++|...|+++.. |+ ...+..+...+...
T Consensus 131 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 131 --------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred --------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 1456677778888888888888888887752 21 22334557888999
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKP---DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+++.+. .|+ ...|..+..+|.+.|++++
T Consensus 191 g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp HHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999985 45 5788999999999999999999999999773 454 7789999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------------KAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~ 794 (953)
|++.++++.. +.++.+|..+...+...|+++.|...+++++++.|+ +...+..|+.++...|+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 9999988753 345789999999999999999999999999999887 36778999999999999998
Q ss_pred HHHHHH
Q 037236 795 VRMMRQ 800 (953)
Q Consensus 795 a~~~~~ 800 (953)
+.++.+
T Consensus 346 a~~~~~ 351 (365)
T 4eqf_A 346 FQAANL 351 (365)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=165.79 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=162.3
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.......+
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-- 172 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-- 172 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH--
Confidence 445566677777888888888888876653 355678888888888888888888888888753 3322111000
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC---CHHHHHHHHHHHHhcCChHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK---DVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~ 657 (953)
+.... .......+..+...+ +.|++++|...|+++. .| +..+|..+...|...|++++
T Consensus 173 ----~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 173 ----EEGAG------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp -----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHhh------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 00000 000001111222333 6777888888887765 22 46778888888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 658 AIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 658 A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
|+..|+++++. .| +..++..+...+...|++++|..+|+++.+. .|+ ...+..+..+|.+.|++++|.+.+++
T Consensus 236 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 236 AVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888773 45 5667788888888888888888888887663 344 66778888888888888888888776
Q ss_pred CCC--CCC-----------hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 736 MPE--EAD-----------AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 736 ~~~--~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
+.. +.+ ..+|..+..++...|+.+.|..+.++.++
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 542 112 57888888888888998888888876654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-13 Score=157.46 Aligned_cols=352 Identities=12% Similarity=0.011 Sum_probs=296.1
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc----ccccchhhHHHHHHHHhCCCC
Q 037236 434 SRTVSSWNALICGYAQ----NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH----LKSLHRGKEIHGFVIRNGLEG 505 (953)
Q Consensus 434 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~ 505 (953)
..++..+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998865 44566666666766 889999999999998876
Q ss_pred chhhHhhHHHHHHh----cCChhHHHHHHHhcccC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 506 DSFTGISLLSLYMH----CEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQ----NKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 506 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
+...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677788889988 78999999999987654 56678888888887 789999999999998875 45666
Q ss_pred HHHHHHhcc----ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHH
Q 037236 577 VSILSACSQ----LSALRLGKETHCYALKAILTNDAFVACSIIDMYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIG 647 (953)
Q Consensus 577 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 647 (953)
..+-..+.. .++.++|...+....+.+ +......|..+|.. .++.++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665 789999999999998876 66788889999987 899999999999876 456778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 648 GHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA-----GLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 648 ~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.|.. .++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999998864 556777788888877 8999999999999762 24567888888
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 037236 719 MLGRAG---KLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG--- 788 (953)
Q Consensus 719 ~l~~~g---~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--- 788 (953)
+|.+.| ++++|++.+++.....++..|..|...+.. .+|.+.|...++++.+.. ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888867 889999999988766788999999999988 899999999999998864 68899999999999
Q ss_pred -cCCchHHHHHHHHHHHCC
Q 037236 789 -SEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 789 -~g~~~~a~~~~~~m~~~~ 806 (953)
.+++++|...+++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 899999999998887755
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-14 Score=164.61 Aligned_cols=369 Identities=11% Similarity=0.038 Sum_probs=238.0
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHH-HHHhcCCcccHHH----HhccC------CCCChhhHHH
Q 037236 374 VLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVV-AYAKCGSEISAEN----VFHGM------DSRTVSSWNA 442 (953)
Q Consensus 374 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~-~y~~~g~~~~A~~----~f~~~------~~~~~~~~~~ 442 (953)
|...+..+.+.|+.+.+..++..+++. .|+...+..++. .....|+.+.|.+ +|+.. ...+...|..
T Consensus 49 w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~ 126 (530)
T 2ooe_A 49 WKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD 126 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 333333344444444444444444433 245556666664 3345688887765 55543 1235667887
Q ss_pred HHHHHHh---------cCChHHHHHHHHHhhhCCCCCCc---chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhH
Q 037236 443 LICGYAQ---------NGDHLKALDYFLQMTHSDLEPDL---FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTG 510 (953)
Q Consensus 443 li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 510 (953)
.+....+ .|++++|..+|++.+.. |+. ..|..........+. .+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 127 YINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred HHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 7776554 67888888898888872 322 122211110000000 000
Q ss_pred hhHHHHHHhcCChhHHHHHHHh-------ccc------CC--------cccHHHHHHHHHhc----CCh----hHHHHHH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDE-------MED------KS--------LVSWNTMIAGYSQN----KLP----VEAIVLF 561 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~-------~~~------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~ 561 (953)
..++. .+.++++.|..++.. +.. |+ ...|...+.-...+ ++. ++|+.+|
T Consensus 184 ~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 184 KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 11110 123445555555543 111 11 23455554333222 122 3677888
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcc-------ccchH-------HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQ-------LSALR-------LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
++..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|
T Consensus 262 ~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 8887752 2244555555555543 67776 7888888887632334678899999999999999999
Q ss_pred HHHhhhcC--CC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 037236 628 RRVFDRLK--DK-DV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA-CNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 628 ~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~ 701 (953)
..+|+++. .| +. ..|..++..+.+.|+.++|.++|++.++. .| +...+...+.. +...|++++|..+|+..+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99999876 34 43 58999999999999999999999999984 44 33344433333 336899999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-C----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-D----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+.. |+ ...|..+++.+.+.|+.++|..+|++.... | + ..+|...+.....+|+.+.+..+.+++.+..|+
T Consensus 419 ~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 419 KKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 754 54 788999999999999999999999987431 2 2 348999999999999999999999999999885
Q ss_pred C
Q 037236 775 K 775 (953)
Q Consensus 775 ~ 775 (953)
+
T Consensus 496 ~ 496 (530)
T 2ooe_A 496 E 496 (530)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=164.25 Aligned_cols=279 Identities=14% Similarity=0.011 Sum_probs=175.5
Q ss_pred CChhHHHHHHHhccc--C-CcccHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHhc----cccch
Q 037236 521 EKSSSARVLFDEMED--K-SLVSWNTMIAG---YSQNKLPVEAIVLFRRMFSIGVQPC-EISIVSILSACS----QLSAL 589 (953)
Q Consensus 521 g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~ 589 (953)
+++++|...|++..+ | ++..+..+... +...++.++|++.|++..+. .|+ ...+..+...+. ..+..
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHH
Confidence 457788888877653 3 33444444443 34457778888888877765 343 333333333332 34567
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc--------------
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-------------- 652 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-------------- 652 (953)
+++.+.+..+.+.... +..++..+...|.+.|++++|...|++.. +.+..+|..+...|...
T Consensus 230 ~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7888888777765433 56677888889999999999999988775 44566777776665432
Q ss_pred -----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHH-HHh
Q 037236 653 -----GYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE----HYACVVD-MLG 721 (953)
Q Consensus 653 -----g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~lv~-~l~ 721 (953)
+..++|+..|++..+ ..| +..++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+.
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHH
Confidence 336778888888887 456 556788899999999999999999999876 344422 2233333 245
Q ss_pred hcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 722 RAGKLDDAFKLIIEMP-EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
..|++++|++.+++.. ..|+...+... .+.++..+++.++.+|+++.+|..||.+|...|++++|.+.++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7899999999998764 35665444333 2355677888999999999999999999999999999999988
Q ss_pred HHHHCCCccCCceeEE
Q 037236 801 RMKERGLQKEAGCSWI 816 (953)
Q Consensus 801 ~m~~~~~~~~~~~s~i 816 (953)
+.-+.+-......+|+
T Consensus 455 kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 455 RGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------------
T ss_pred HHHhcCCCCCcHhhcC
Confidence 8776554433344454
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=161.16 Aligned_cols=252 Identities=9% Similarity=0.050 Sum_probs=187.2
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
..+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|++.|+++.+.. |+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~------------ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK------------ 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cC------------
Confidence 3344555566666666666666666542 234456666666666666666666666665542 21
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHH--------------HH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAI--------------IG 647 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~ 647 (953)
+...+..+...|.+.|++++|...|+++. +.+...+..+ ..
T Consensus 88 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 ----------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34455566666666777777777666654 1122222222 22
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 648 -GHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 648 -~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
.+...|++++|++.++++.+. .| +..++..+...+...|++++|..+++.+.+. .|+ ...+..+...|.+.|
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcC
Confidence 377788999999999999984 45 6788899999999999999999999999763 454 778899999999999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcC
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------------KAENYVLVSNIYAGSE 790 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g 790 (953)
++++|.+.++++.. +.+..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+|...|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999988753 346789999999999999999999999999999999 7899999999999999
Q ss_pred CchHHHHHHH
Q 037236 791 KWDDVRMMRQ 800 (953)
Q Consensus 791 ~~~~a~~~~~ 800 (953)
++++|..+.+
T Consensus 301 ~~~~A~~~~~ 310 (327)
T 3cv0_A 301 RPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHH
Confidence 9999998765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=162.81 Aligned_cols=230 Identities=8% Similarity=-0.027 Sum_probs=193.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...+.+.|++++|+..|+++.+. .|+ +...+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG----------------------------------DAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcC----------------------------------CHHHHHHHHH
Confidence 4556888888999999999999999988875 343 5567788899
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT-----------FTFVGILM 682 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~-----------~t~~~ll~ 682 (953)
.|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++.+ ..|+. ..+..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 9999999999999999876 45688999999999999999999999999998 45632 22234578
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+|+++.+..+-.++...+..+..+|.+.|++++|++.++++.. +.++.+|..++..+...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999999988544433578899999999999999999999998754 4568899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++++.+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=148.99 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccc
Q 037236 410 NAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLH 489 (953)
Q Consensus 410 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 489 (953)
..+..+|...|+++.|...++....++..++..+...+...|+.++|++.++++...+..|+..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~---------------- 101 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT---------------- 101 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----------------
Confidence 3455677777888888877776555566677777777888888888888888877665555533
Q ss_pred hhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037236 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV 569 (953)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 569 (953)
..+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 102 ------------------~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 102 ------------------TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------------------HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 3344555678889999999999988 456778888999999999999999999999876
Q ss_pred CCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHH
Q 037236 570 QPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAII 646 (953)
Q Consensus 570 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 646 (953)
.|+... ..+ ..+++..+...|++++|..+|+++. +.++..|+.+.
T Consensus 160 ~p~~~~-~~l-------------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 160 DEDATL-TQL-------------------------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp CTTCHH-HHH-------------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CcCcHH-HHH-------------------------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 354321 111 1122334445577888888888775 45777888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN-GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
.++...|++++|++.|++.++ ..| +..++..++..+...|+.++ +.++++++.+ +.|+-. .+.+...+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~---~~P~~~---~~~d~~~~~~ 279 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD---AHRSHP---FIKEYRAKEN 279 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCH---HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hCCCCh---HHHHHHHHHH
Confidence 888888888888888888887 466 66778888888888888865 5678887766 445522 2345566666
Q ss_pred CHHHHHHHH
Q 037236 725 KLDDAFKLI 733 (953)
Q Consensus 725 ~~~eA~~~~ 733 (953)
.+++|..-|
T Consensus 280 ~fd~~~~~~ 288 (291)
T 3mkr_A 280 DFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=145.48 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=161.0
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGI 680 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~l 680 (953)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3467788889999999999999999999875 45788999999999999999999999999999 577 56788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHH
Q 037236 681 LMACNHA-----------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSS 747 (953)
Q Consensus 681 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ 747 (953)
..++... |++++|+..|++.++ +.|+ ...+..+..+|...|++++|++.+++... ..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 999999999999987 5676 77889999999999999999999987642 277889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+...+...|++++|...++++++++|+++.++..++.+|...|++++|...++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=147.24 Aligned_cols=273 Identities=11% Similarity=0.033 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
+...|..+...+...|++++|+.+|+++.+.. |+ +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45567788888889999999999999887642 21 2334445566
Q ss_pred HHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-HHhccccchHH
Q 037236 516 LYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL-SACSQLSALRL 591 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~ 591 (953)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. |+.......+ ..+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------- 133 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-------- 133 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH--------
Confidence 67777777777777776643 345677778888888888888888888887753 3322221111 000
Q ss_pred HHHHHHHHHHcCCCCCccHHHHH-HH-HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 592 GKETHCYALKAILTNDAFVACSI-ID-MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
++......+ .. .+...|++++|...|+++. +.+...|..+...|...|++++|++.++++.
T Consensus 134 --------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 134 --------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp --------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 000000011 11 1333444444444444433 2244455555555555555555555555555
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---
Q 037236 667 ALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--- 740 (953)
Q Consensus 667 ~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--- 740 (953)
+. .| +..++..+...+...|++++|..+|+++.+. .|+ ...+..+..+|.+.|++++|.+.++++.. .|
T Consensus 200 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 200 EL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred Hh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 42 33 3444555555555555555555555555442 222 44455555555555555555555544321 11
Q ss_pred ----------ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 741 ----------DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 741 ----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
+..+|..+..++...|+.+.|...++++++..|
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 244555666666666666666666655555433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=157.67 Aligned_cols=380 Identities=11% Similarity=-0.004 Sum_probs=217.4
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHc-----C---CCCchhHHHHHHHHHHhcCCcccHHHHhccCC-------C-
Q 037236 371 EVTVLNVLTSCSEKSELLSLKELHGYSLRH-----G---FDNDELVANAFVVAYAKCGSEISAENVFHGMD-------S- 434 (953)
Q Consensus 371 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~- 434 (953)
...|+.+-..+...|+.+.|.+.+...++. + -+....+++.+..+|...|++++|...|++.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345667777777888899888888776653 1 12234567888888888888888887776532 1
Q ss_pred ---CChhhHHHHHHHHHh--cCChHHHHHHHHHhhhCCCCCCcc-hHHHHHHh---hccccccchhhHHHHHHHHhCCCC
Q 037236 435 ---RTVSSWNALICGYAQ--NGDHLKALDYFLQMTHSDLEPDLF-SIGSLILA---CTHLKSLHRGKEIHGFVIRNGLEG 505 (953)
Q Consensus 435 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g~~~ 505 (953)
....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.+.+.+.+...++..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 123455555555544 34688888888888764 34433 33333333 33445667777777777776543
Q ss_pred chhhHhhHHHHHHh----cCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HH
Q 037236 506 DSFTGISLLSLYMH----CEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IV 577 (953)
Q Consensus 506 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 577 (953)
+..++..+...+.. .|+.++|.+.|++... .+...|..+...|.+.|++++|+..|++..+. .|+... +.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 33444444444433 4567788888876643 34557778888888888888888888888765 454332 22
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC
Q 037236 578 SILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 578 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 654 (953)
.+-.++...+.. ..... ...........+..++|...|++.. +.+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 222222111000 00000 0001111112234567777777654 4456688899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDT--FTFVGILM-ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
+++|++.|++.++....|.. ..+..+.. ...+.|+.++|+..|++.++ +.|+....... .+.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 99999999999985433322 12333333 34578999999999999876 66764332222 233334
Q ss_pred HHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 732 LIIEMP--EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 732 ~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
++++.. .+.++.+|..|+..+...|++++|...+++++++.|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444332 1456789999999999999999999999999999999998776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=143.33 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=177.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..|..+...+...|++++|+..|++..+.. + +...+..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 356667777888888888888888877654 3 455566677777
Q ss_pred HhcCCHHHHHHHhhhcCC--C-C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037236 619 AKCGCLEQSRRVFDRLKD--K-D-------VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g 688 (953)
...|++++|...|++... | + ...|..+...|...|++++|+..|+++.+ ..|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 777888888877777652 1 1 57888899999999999999999999998 45664 3456678
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 689 LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 689 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
++++|...++.+.+ ..|+ ...+..+...+.+.|++++|.+.++++.. +.++.+|..+...+...|+++.|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998876 4555 67788899999999999999999988753 456788999999999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 766 KTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 766 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++++++|+++.++..++.+|...|++++|...++...+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877755
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-15 Score=172.77 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=113.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK-------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ 679 (953)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 680 ILMACNHAGL-VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 680 ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+|.++++.|+ .++|.++|++|. ..|+.||..+|++++....|.+-++...++..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 9999999998 478999999995 57999999999999988888766665555533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=176.40 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=126.9
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHhccCC-------CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCCh
Q 037236 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP-------ERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDV 268 (953)
Q Consensus 196 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 268 (953)
...-..+||+||++||++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++| ...|+.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM--~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV--KDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCcH
Confidence 33446789999999999999999999997764 589999999999999999999999999999 899999999
Q ss_pred hhHHHHHHhhhcCCCc-hHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC-----CCcccHHHHHH
Q 037236 269 ATVVTVLPVCAGEGNV-DLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN-----KNVVSWNTIIG 342 (953)
Q Consensus 269 ~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~d~~~~~~li~ 342 (953)
.||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++..++++..+.. +.+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 78999999999999999999999999888887766666666554432 12344455556
Q ss_pred HHHcCC
Q 037236 343 AFSMAG 348 (953)
Q Consensus 343 ~~~~~g 348 (953)
-|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=138.91 Aligned_cols=244 Identities=12% Similarity=-0.001 Sum_probs=154.8
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
........|.+.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+....|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------ 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH------------
Confidence 344556667777777777777777653 23446777777777777777777777777763211111
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 12235556666666677777777666654 335566777777777777777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC---HHHHHHHHHhCC
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK---LDDAFKLIIEMP 737 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~---~~eA~~~~~~~~ 737 (953)
++.++. .| +...+..+...+...+++++|...|+.+.+ +.|+ ...+..+..++...|+ +++|...+++..
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 776663 45 444555555244444577777777777765 3344 4555666666666665 555555555442
Q ss_pred C----CCC------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 738 E----EAD------AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 738 ~----~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
. .|+ ..+|..+...+...|+++.|...++++++++|+++.+...+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2 133 2467778888899999999999999999999999988877776655444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-13 Score=144.17 Aligned_cols=223 Identities=12% Similarity=0.088 Sum_probs=190.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|+.+...+.+.|++++|++.|++.++. .|+ +...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~~ 140 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHHH
Confidence 346777888889999999999999998875 454 56677788888
Q ss_pred HHhcCC-HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 618 YAKCGC-LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 618 y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
|.+.|+ +++|...|+++. +.+...|+.+...+...|++++|+..|+++++ +.| +...|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHH
Confidence 889996 999999999876 55788999999999999999999999999999 578 77889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh-cCCHHHH-----HHHHHhCCC--CCChhHHHHHHHHHHhcC--ChhHH
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDMLGR-AGKLDDA-----FKLIIEMPE--EADAGIWSSLLRSCRTYG--ALKMG 761 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~-~g~~~eA-----~~~~~~~~~--~~~~~~~~~ll~~~~~~g--~~~~a 761 (953)
|+..|+++++ +.|+ ...|..+..+|.+ .|..++| ++.+++... +.+...|..+...+...| +++.|
T Consensus 219 Al~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 219 ELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH
Confidence 9999999987 5666 7889999999999 6666887 477766543 346789999999998888 68999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcC---------CchHHHHHHHHH
Q 037236 762 EKVAKTLLELEPDKAENYVLVSNIYAGSE---------KWDDVRMMRQRM 802 (953)
Q Consensus 762 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 802 (953)
...++++ +.+|+++.++..|+++|...| ..++|.++++.+
T Consensus 296 ~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 296 LNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999985 258899988887
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=145.50 Aligned_cols=242 Identities=11% Similarity=0.091 Sum_probs=203.1
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKL-PVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
..++..+...|.+.|++++|.+.|+++.. .+...|+.+...+.+.|+ +++|+..|++..+. .|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC----------
Confidence 44567777888899999999999998764 356789999999999997 99999999999875 454
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
+...|..+..+|.+.|++++|...|+++. ..+...|..+..++...|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 56677778888888899999999999876 568889999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC--CHHHH
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNH-AGLVENG-----LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG--KLDDA 729 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g--~~~eA 729 (953)
..|+++++ +.| +...|..+..++.. .|..++| +..|+++++ +.|+ ...|..+..+|.+.| ++++|
T Consensus 221 ~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 221 QYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHH
Confidence 99999999 577 67889999999998 6665777 588888876 5677 778899999999988 69999
Q ss_pred HHHHHhCCCCC-ChhHHHHHHHHHHhcC--------C-hhHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 037236 730 FKLIIEMPEEA-DAGIWSSLLRSCRTYG--------A-LKMGEKVAKTL-LELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 730 ~~~~~~~~~~~-~~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+++++++...| +..++..++..+...| + ++.|..+++++ .+++|.....|..++..+..+
T Consensus 296 ~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 296 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99998884344 5678888988888764 2 58999999999 999999999999888877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-13 Score=138.59 Aligned_cols=238 Identities=9% Similarity=-0.085 Sum_probs=181.8
Q ss_pred HhcCChhHHHHHHHhcccC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 518 MHCEKSSSARVLFDEMEDK-------SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
...|++++|...|+++.+. +...|..+...|...|++++|+..|++..+. .|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~------------------ 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPD------------------ 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCC------------------
Confidence 3456677777777766542 2345666666777777777777777766654 222
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|+..|+++.+
T Consensus 76 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 76 ----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56677788889999999999999999876 45688999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-----C
Q 037236 668 LGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-----D 741 (953)
Q Consensus 668 ~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-----~ 741 (953)
..|+.......+..+...|++++|...++...... .++...+ .++..+...++.++|.+.+++.... | +
T Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 140 --DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp --HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 56766655556666778899999999998887643 2333444 4777888889999999999887642 2 2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
..+|..+...+...|+++.|...++++++++|++...+ +.++...|++++|.+..
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 57899999999999999999999999999999886544 67888889988887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-12 Score=142.67 Aligned_cols=350 Identities=8% Similarity=0.011 Sum_probs=210.8
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCc---ccHHHHhccCCCCChhhHHHHHHHHHhcC-----ChHHH
Q 037236 385 SELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSE---ISAENVFHGMDSRTVSSWNALICGYAQNG-----DHLKA 456 (953)
Q Consensus 385 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A 456 (953)
|+++.|.+++....+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...| ++++|
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 33444444444443333 233334455556666766 88888888876667777777777666655 67899
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCCh----hHHHHHHHh
Q 037236 457 LDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKS----SSARVLFDE 532 (953)
Q Consensus 457 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~f~~ 532 (953)
+..|++..+.|.. ..+..+...+...+..+.+...+..+.+.....+......|..+|...+.+ +.+..++..
T Consensus 94 ~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 94 ESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999999886632 255556666655555444444444443332222455666777777777744 445555666
Q ss_pred cccCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCcc
Q 037236 533 MEDKSLVSWNTMIAGYSQNK---LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAF 609 (953)
Q Consensus 533 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 609 (953)
....++.++..|...|.+.| +.++|++.|++..+.|. + +..
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~-----------------------------------~a~ 214 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V-----------------------------------TAQ 214 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-----------------------------------CHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-----------------------------------HHH
Confidence 66666667888888888888 77888888887777652 2 222
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHhhhcCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 610 VACSIIDMYAKC----GCLEQSRRVFDRLKDKDVTSWNAIIGG-H--GIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 610 ~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
.+..|..+|... ++.++|...|++..+.++..+..+... | ...|+.++|++.|++..+.| +...+..|..
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 223445555433 678888888887764466677777776 4 45788999999999888865 5666777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 683 ACNHAG-----LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 683 a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
.|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|.+++++.....++.....|...|.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 776 45 8899999888763 2346677777777766 3488999999988766666667777776665
Q ss_pred h----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 754 T----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 754 ~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
. .+|.+.|...++++.+..+ +.+...+..+..
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~ 401 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEA 401 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHT
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 3 4588899999988887664 344455555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=133.57 Aligned_cols=195 Identities=10% Similarity=-0.037 Sum_probs=166.2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA 683 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a 683 (953)
...+..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4566777888889999999999988775 456788888999999999999999999999884 45 66778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
+...|++++|.++|+++.+ .+..|+ ...+..+..+|.+.|++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998865 335565 67788888999999999999999987653 3457888899999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-12 Score=129.25 Aligned_cols=196 Identities=12% Similarity=0.029 Sum_probs=168.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 45667778889999999999999998765 456788999999999999999999999999884 45 6778888999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh
Q 037236 683 ACNHA-GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 683 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 758 (953)
.+... |++++|..+++.+.+ .+..|+ ...+..+...+.+.|++++|++.++++.. +.+...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 444455 67788899999999999999999987653 34578899999999999999
Q ss_pred hHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 759 KMGEKVAKTLLELEP-DKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.|...++++++..| +++..+..++.++...|+.++|..+.+.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999998888653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-13 Score=135.80 Aligned_cols=211 Identities=14% Similarity=0.079 Sum_probs=137.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|..+...+.+.|++++|+..|+++.+. .|+ +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 345666666777777777777777777653 232 34455556666
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence 777777777777777654 346677777888888888888888888888774 34 566777777888888888888
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 694 LKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+++++.+. .| +...+..+..++.+.|++++|++.++++.. +.+..+|..+...+...|+++.|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888887663 33 366777778888888888888888876643 34567788888888888888888888888888
Q ss_pred cCCCCcchHHHHHHHHHhc
Q 037236 771 LEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 771 l~p~~~~~~~~l~~~y~~~ 789 (953)
++|+++.++..++.+....
T Consensus 222 ~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HCTTCHHHHHHHTC-----
T ss_pred cCcchHHHHHHHHHHHhhc
Confidence 8888888777766655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-12 Score=130.72 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=170.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|..+...|...|++++|++.|+++.+.. |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4567788888999999999999999987752 32 44566777788
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..| +...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999888765 4577888999999999999999999999998844556 556788888999999999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++.. +.+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998763 344 77888999999999999999999988753 35677888888889999999999999999999
Q ss_pred cCCCCcchHHH
Q 037236 771 LEPDKAENYVL 781 (953)
Q Consensus 771 l~p~~~~~~~~ 781 (953)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998876543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=134.65 Aligned_cols=235 Identities=11% Similarity=-0.026 Sum_probs=182.4
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHh
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV--QPCEISIVSILSAC 583 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~ 583 (953)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---------
Confidence 4566777888899999999999887643 5667888899999999999999999999876421 11100
Q ss_pred ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
....++..+...|.+.|++++|...|++.. .|+. ..+...|++++|+..
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHH
Confidence 013556677778888888888888888766 3442 345666788999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
++++.. ..| +...+..+...+...|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|++.+++...
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999888 466 5567888888889999999999999988763 343 67788889999999999999999887653
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHHHHHH
Q 037236 739 -EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE------PDKAENYVLVSNI 785 (953)
Q Consensus 739 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 785 (953)
+.++.+|..+...+...|+++.|...++++++++ |++...+..+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3457789999999999999999999999999998 8777766666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=128.13 Aligned_cols=208 Identities=13% Similarity=0.052 Sum_probs=165.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...+...|++++|++.|+++.+. .|+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHH
Confidence 3446677777788888888888888877764 232 3445666777
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-GYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVE 691 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~ 691 (953)
.|...|++++|...|+++. +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7888888888888888765 44677888899999999 999999999999988444453 567888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--C-CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--E-ADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+|..+|+.+.+. .|+ ...+..+..++.+.|++++|.+.++++.. + .+...|..+...+...|+.+.+...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999998763 454 77888899999999999999999987653 3 5667777777778899999999999999
Q ss_pred HhccCCCCcchHHHHH
Q 037236 768 LLELEPDKAENYVLVS 783 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~ 783 (953)
+.+..|+++.....+.
T Consensus 208 ~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 208 LQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHCTTCHHHHHHHC
T ss_pred HHHhCCCCHHHHHHhc
Confidence 9999999988766553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=134.26 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=155.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
....+..+...+.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 56677778889999999999999999875 457889999999999999999999999999984 55 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+++++.+.. ..+...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997743 22467888999999999999999999988753 4568899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999888766
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-11 Score=126.66 Aligned_cols=223 Identities=9% Similarity=-0.021 Sum_probs=149.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+..++..+...|...|++++|++.|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 34456666666777777777777777766521 2233444555
Q ss_pred HHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 037236 617 MYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH- 686 (953)
Q Consensus 617 ~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~- 686 (953)
+|.. .|++++|...|++.. ..+...+..+...|.. .|++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 666666666666554 2355666666666766 777777777777777653 55666667777776
Q ss_pred ---cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----c
Q 037236 687 ---AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----Y 755 (953)
Q Consensus 687 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~ 755 (953)
.+++++|..+|++..+. + +...+..+..+|.+ .+++++|++.+++.....++..+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77777777777777542 1 34556666666766 77777777777766544556667777777777 7
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCC
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 806 (953)
++++.|...++++++.+| +.++..|+.+|.. .|++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777777765 6677777888877 778888887777666544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-12 Score=127.15 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCC-CH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-----------GYGKEAIELFEKMLALGHKP-DT 674 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~P-~~ 674 (953)
.+..+...|.+.|++++|...|++.. +.+...|..+...|... |++++|+..|++.++ ..| +.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~ 118 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYA 118 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccH
Confidence 33344444444444444444444432 22334444444444444 555555555555555 344 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSC 752 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~ 752 (953)
..+..+..++...|++++|+..|+++++.. .+...+..+..+|...|++++|++.+++... +.++.++..+...+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 445555555555555555555555554422 3345555555555555555555555554432 22344555555555
Q ss_pred HhcCChhHHHHHHHH
Q 037236 753 RTYGALKMGEKVAKT 767 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~ 767 (953)
...|+++.|...+++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 555555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-12 Score=122.10 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
++..|..+...|...|++++|++.|++.++ +.| +..++..+..++...|++++|...++.... ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 566778888888888888888888888887 467 567788888888888888888888888765 3344 566777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
+...+...+++++|.+.+++... +.+..+|..+...+...|++++|...++++++++|+++.++..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 77788888888888888876543 3457788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037236 794 DVRMMRQRMKE 804 (953)
Q Consensus 794 ~a~~~~~~m~~ 804 (953)
+|...+++.-+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-11 Score=126.38 Aligned_cols=227 Identities=13% Similarity=0.008 Sum_probs=183.6
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhcccC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQ----NKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 4456667778888999999999999987765 45678888888998 999999999999887654
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----
Q 037236 581 SACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGI---- 651 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 651 (953)
+...+..+..+|.. .|++++|...|++.. ..+...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 33445556667777 888888888888765 3467788888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----c
Q 037236 652 HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH----AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----A 723 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~ 723 (953)
.|++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 899999999999998865 56677778888887 89999999999988763 245777888889988 9
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcc
Q 037236 724 GKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
|++++|++.+++.....++..+..+...+.. .++.++|...+++++++.|+++.
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999887655557788888888888 89999999999999999986543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-11 Score=134.25 Aligned_cols=344 Identities=11% Similarity=0.004 Sum_probs=225.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc---chhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 442 ALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL---HRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 442 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
.+...+.+.|++++|++.|++..+.|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356777889999999999999988763 33344444455556666 8888888888755 4455566666455
Q ss_pred hcC-----ChhHHHHHHHhcccC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 519 HCE-----KSSSARVLFDEMEDK-SLVSWNTMIAGYSQNKLPV---EAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 519 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
..+ +.++|...|++..++ +...+..|...|...+..+ ++.+.+......|. ......+-..+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 544 678899998887654 5567888888888766544 45555555555443 33444444455555544
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc----CChHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCG---CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH----GYGKEAI 659 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~ 659 (953)
+.+........+.-...++..+..|..+|.+.| +.++|...|++.. .++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444443333333323335558888999999999 8889999998765 44555557777777554 6899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC-----CHHHHHH
Q 037236 660 ELFEKMLALGHKPDTFTFVGILMA-C--NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG-----KLDDAFK 731 (953)
Q Consensus 660 ~l~~~m~~~g~~P~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g-----~~~eA~~ 731 (953)
+.|++.. .| +...+..|... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999886 32 45566666665 3 568899999999998864 22 5677777888777 55 9999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHH
Q 037236 732 LIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMK 803 (953)
Q Consensus 732 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 803 (953)
.|++.. +.++..+..|...|.. ..|.+.|...++++.+ +.++.+...|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999888 7677888888766655 3389999999999876 5678888999999985 558888988888877
Q ss_pred HCCC
Q 037236 804 ERGL 807 (953)
Q Consensus 804 ~~~~ 807 (953)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-11 Score=127.05 Aligned_cols=242 Identities=9% Similarity=-0.065 Sum_probs=192.3
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--CCcc----cHHHHHH
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--KSLV----SWNTMIA 546 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 546 (953)
..+......+...|+++.|...+..+++.... +...+..+...|...|++++|...|++..+ ++.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556667788899999999999999987643 555788888999999999999999998765 2332 3888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 037236 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQ 626 (953)
Q Consensus 547 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 626 (953)
.|...|++++|++.|++..+. .|+ +..++..+...|.+.|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~----------------------------------~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTT----------------------------------RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STT----------------------------------CTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Ccc----------------------------------cHHHHHHHHHHHHHccCHHH
Confidence 999999999999999999874 332 45677888999999999999
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL---VENGLKYFSQ 699 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~---~~~a~~~~~~ 699 (953)
|...|++.. +.+...|..+...+...+++++|++.|+++++ ..| +...+..+..++...|+ +++|...++.
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999987 34677888888344445699999999999999 467 46778888888888888 8889999999
Q ss_pred HHHhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 700 MQKLHAVKPKL------EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 700 m~~~~~~~p~~------~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+.+...-.|+. ..|..+...|.+.|++++|.+.+++... +.++..+..+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 98765444552 5788899999999999999999998753 345666666554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=147.12 Aligned_cols=189 Identities=8% Similarity=-0.013 Sum_probs=168.4
Q ss_pred CccHHHHHHHHHHhcCCH-HHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCL-EQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
+...+..+...|...|++ ++|...|++.. +.+...|..+...|...|++++|++.|++.++ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 667777888888889999 99999998775 44688999999999999999999999999998 5788888999999
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHhCCC-CC---
Q 037236 683 ACNHA---------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--------GKLDDAFKLIIEMPE-EA--- 740 (953)
Q Consensus 683 a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------g~~~eA~~~~~~~~~-~~--- 740 (953)
++... |++++|+..|+++.+ +.|+ ...|..+..+|.+. |++++|++.+++... .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 999999999999987 4565 78889999999998 999999999988754 44
Q ss_pred -ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 741 -DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 741 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++..|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+...
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999999987543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-12 Score=146.79 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+..+|+.+...|...|++++|++.|++.++ +.| +..++..+..++.+.|++++|+..|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888889999999999999999888 577 567788888999999999999999998876 5676 778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
+..+|.+.|++++|++.+++... . .+...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998887653 3 457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 037236 794 DVRMMRQRMK 803 (953)
Q Consensus 794 ~a~~~~~~m~ 803 (953)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=120.15 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=146.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+..+|..|...|.+.|++++|...|++.. +.++.+|..+...|...|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 66789999999999999999999999876 457889999999999999999999999999884 56 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~ 759 (953)
.+...++++++...+....+ +.|+ ...+..+..+|.+.|++++|++.+++... +.++.+|..++..+...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999876 3455 77888999999999999999999988754 456789999999999999999
Q ss_pred HHHHHHHHHhccCCCCc
Q 037236 760 MGEKVAKTLLELEPDKA 776 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~ 776 (953)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=127.28 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=162.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++++. .| +..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHH
Confidence 45667788899999999999999999876 457889999999999999999999999999994 56 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+|+.+.+ +.|+......+...+.+.|++++|...+++... +++...|. ++..+...++.+.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 99999999999999999977 456654555555666788999999999966542 34444454 7777788888999
Q ss_pred HHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
|...++++++..|. ++..+..++.+|...|++++|...+++..+.
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999998774 3788999999999999999999998888653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-12 Score=139.68 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=196.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
....+......+...|++++|+..|++..+.+ |+.... -..++..+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~ 55 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGN 55 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH------------------------------HHHHHHHHHH
Confidence 33455566677777888888888887776642 221100 0123445556
Q ss_pred HHHhcCChhHHHHHHHhccc---------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhcc
Q 037236 516 LYMHCEKSSSARVLFDEMED---------KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQ 585 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 585 (953)
.|...|++++|...|++... ....+|..+...|...|++++|+..|++..+.... ++...
T Consensus 56 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------- 125 (406)
T 3sf4_A 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---------- 125 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc----------
Confidence 66677777777776665431 12346677777888888888888888877653110 11000
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC--------------------HHHHHHHhhhcC-------C--
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC--------------------LEQSRRVFDRLK-------D-- 636 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~-------~-- 636 (953)
...++..+...|...|+ +++|...|.+.. .
T Consensus 126 ---------------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 184 (406)
T 3sf4_A 126 ---------------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence 12234445555555666 666666655443 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-- 709 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 709 (953)
....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++...+...-.++
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 1234677888888889999999999988876310 112 236778888889999999999999888653322222
Q ss_pred --hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccC------C
Q 037236 710 --LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELE------P 773 (953)
Q Consensus 710 --~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p 773 (953)
...+..+...|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++. |
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 344 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 344 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45677888899999999999988877642 122 5578888888999999999999999999873 3
Q ss_pred CCcchHHHHHHHHHhcCCchH
Q 037236 774 DKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 774 ~~~~~~~~l~~~y~~~g~~~~ 794 (953)
....++..++.+|...|+...
T Consensus 345 ~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 345 GELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred chhHHHHHHHHHHHHhhHhHH
Confidence 346678889999998887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.3e-12 Score=139.95 Aligned_cols=264 Identities=9% Similarity=0.010 Sum_probs=184.3
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhccc--C-Cc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMED--K-SL----VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|++.|++..+...
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------- 117 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------- 117 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 33445556666666666666665543 1 11 2455566666666666666666666543200
Q ss_pred hccccchHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHhc
Q 037236 583 CSQLSALRLGKETHCYALKAI-LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---------KDVTSWNAIIGGHGIH 652 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~ 652 (953)
+.+ .......+..+...|...|++++|...|++... ....+|..+...|...
T Consensus 118 ------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 118 ------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000 011334566777888888888888888877641 1234778888888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 037236 653 GY-----------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK- 709 (953)
Q Consensus 653 g~-----------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 709 (953)
|+ +++|++.+++..+. +-.| ...++..+...+...|++++|..++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 99 88898888887652 1112 2356778888899999999999999988664322222
Q ss_pred ---hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---
Q 037236 710 ---LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--- 775 (953)
Q Consensus 710 ---~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--- 775 (953)
...+..+..+|...|++++|.+.+++... ..+ ..+|..+...+...|+++.|...+++++++.++.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 23678888999999999999998876642 111 5678888888999999999999999999875543
Q ss_pred ---cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 ---AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|...++...+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44888999999999999999998877655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=136.82 Aligned_cols=267 Identities=11% Similarity=0.047 Sum_probs=194.1
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhccc--C-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMED--K-S----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSI 579 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 579 (953)
...+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++......
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------- 78 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR---------- 78 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------
Confidence 33444555666666777777776666542 1 1 13455566666666666666666666543210
Q ss_pred HHHhccccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHH
Q 037236 580 LSACSQLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGH 649 (953)
Q Consensus 580 l~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 649 (953)
+.+.. ....++..+...|...|++++|...|++... ++ ..++..+...|
T Consensus 79 ---------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 79 ---------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 00000 1244566778888999999999998887652 22 44788899999
Q ss_pred HhcCC--------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037236 650 GIHGY--------------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH 704 (953)
Q Consensus 650 ~~~g~--------------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 704 (953)
...|+ +++|++.+++..+. +-.| ...++..+...+...|++++|..++++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 99999999987652 1122 23568888899999999999999999987643
Q ss_pred CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 705 AVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 705 ~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.-.++ ...+..+..+|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 33333 34788899999999999999999987642 122 5678889999999999999999999999986
Q ss_pred CCC------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDK------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|.. ..++..++.+|...|++++|...++...+
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 544 66889999999999999999998777644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-11 Score=131.25 Aligned_cols=262 Identities=11% Similarity=0.055 Sum_probs=183.6
Q ss_pred hHHHHHHhcCChhHHHHHHHhccc--C-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMED--K-S----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
.....+...|++++|...|+++.+ + + ...|..+...|...|++++|++.+++......
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------------- 74 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR--------------- 74 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------
Confidence 344556666677777666666542 1 2 23455566666666666666666666543200
Q ss_pred cccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 585 QLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
+.+.. ....++..+...|...|++++|...|++... ++ ..++..+...|...|+
T Consensus 75 ----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 75 ----------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ----------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 00000 1234566677888888888888888877541 22 3377788888888888
Q ss_pred --------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 655 --------------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 655 --------------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
+++|++.+++..+. +-.| ...++..+...+...|++++|..+++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 88998888887652 1122 2346778888889999999999999988654322222
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--
Q 037236 710 ----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-- 775 (953)
Q Consensus 710 ----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-- 775 (953)
...+..+...|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 33678888899999999999998877542 122 5577888888999999999999999999876543
Q ss_pred ----cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 ----AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|...+++..+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44788999999999999999998887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=121.89 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DVT-SWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
++|..+++.+++.-.+.+...|..++..+.+.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555555555542112255677888888888889999998888776 23 343 7888888888889999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 666 LALGHKP-DTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 666 ~~~g~~P-~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
++. .| +...|........ ..|++++|..+|+.+++.. |+ ...|..+++.+.+.|++++|..+|++...
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 884 34 4444544433322 3689999999999887743 44 67788888888899999999999887753
Q ss_pred CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 739 EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 739 ~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
+| ...+|..++.....+|+.+.|..+++++++..|+++.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 33 3568888888888899999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=117.80 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=97.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---D-KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGIL 681 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll 681 (953)
++..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|++.|++.++ ..| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555556666666666666666543 2 4555555555556666666666666666655 344 334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---hhHHHHHH
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPK-L-------EHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---AGIWSSLL 749 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---~~~~~~ll 749 (953)
.++...|++++|...|++..+. .|+ . ..|..+...+.+.|++++|++.+++... .|+ +..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666655542 232 2 3344555555555555555555555433 232 23444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+.. .+...++++..+.+.++..| ........+.+++|...+++..+
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44432 23344445555544443333 22233344445888887776655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-08 Score=117.99 Aligned_cols=444 Identities=10% Similarity=-0.012 Sum_probs=262.6
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCC---hhHHHHHHHHHH
Q 037236 288 ILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGD---VCGTFDLLRKMQ 361 (953)
Q Consensus 288 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~ 361 (953)
...++..+... +-|...|..++..+.+.+.++.++.+|+++.. .....|...+..-.+.+. .+.+.++|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34445555554 56888999999999888999999999988664 345568888888888888 899999999887
Q ss_pred hccCCCCCchhhHHHHHHHhccccch--------HHHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHhcCCcccHHHHhc
Q 037236 362 MKEEEMKPNEVTVLNVLTSCSEKSEL--------LSLKELHGYSLR-HGF-DND-ELVANAFVVAYAKCGSEISAENVFH 430 (953)
Q Consensus 362 ~~g~~~~p~~~t~~~ll~~~~~~~~~--------~~a~~i~~~~~~-~g~-~~~-~~~~~~li~~y~~~g~~~~A~~~f~ 430 (953)
.... ..|+...|..-+.-..+.++. +..+++|+.++. .|. .++ ...|...+......+...
T Consensus 131 ~~~~-~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~------- 202 (679)
T 4e6h_A 131 SKEL-GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN------- 202 (679)
T ss_dssp CSSS-CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS-------
T ss_pred HhcC-CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC-------
Confidence 7521 137766666555544433332 334466665554 244 442 345555555443211000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHH---HHHhh----------ccccccchhhHHHHH
Q 037236 431 GMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGS---LILAC----------THLKSLHRGKEIHGF 497 (953)
Q Consensus 431 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~----------~~~~~~~~a~~i~~~ 497 (953)
.+..+++.+.+..+|+..+......-..+|.. .-... ....+++.|+..+..
T Consensus 203 ---------------~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 203 ---------------KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQD 267 (679)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHH
Confidence 00112233444555555443100000011110 00000 000111222222222
Q ss_pred HHHh--CCC---Cch-hhHhhHHHHHHhcCChhHHHHHHHhcccCC------cccHHHHHHHHHhcCC-------hhHHH
Q 037236 498 VIRN--GLE---GDS-FTGISLLSLYMHCEKSSSARVLFDEMEDKS------LVSWNTMIAGYSQNKL-------PVEAI 558 (953)
Q Consensus 498 ~~~~--g~~---~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~-------~~~A~ 558 (953)
+.+. ++. |.. ...+ ...++..+ ...|...+.--..++. .+.+.
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~------------------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~ 329 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQAT------------------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMT 329 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCC------------------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred HHHHHHhHhhccccccccch------------------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence 1110 100 000 0000 00000000 1234444432222221 12345
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH-HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-
Q 037236 559 VLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK-ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD- 636 (953)
Q Consensus 559 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 636 (953)
.+|++....- .-+...|.....-+...|+.+.+. .+++...... +.+...+-.++..+.+.|+++.|..+|+++..
T Consensus 330 ~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666666542 234455555555566667777885 8888887643 33566677888888899999999999987752
Q ss_pred ------------C------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCH
Q 037236 637 ------------K------------DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDTFTFVGILMACNHA-GLV 690 (953)
Q Consensus 637 ------------~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~~t~~~ll~a~~~~-g~~ 690 (953)
| ....|...+....+.|..+.|..+|.++++. + .+....|...+..-.+. +++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCH
Confidence 2 1236888888888899999999999999985 2 11233444333333333 559
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
+.|..+|+..++.++- +...+...++.+...|+.+.|..+|++... .| ...+|..++..-..+|+.+.+..+.
T Consensus 487 e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 487 KTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999886543 345667888888999999999999998765 23 3468999999999999999999999
Q ss_pred HHHhccCCCCcch
Q 037236 766 KTLLELEPDKAEN 778 (953)
Q Consensus 766 ~~~~~l~p~~~~~ 778 (953)
+++.+..|+++..
T Consensus 565 ~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 565 KRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHSTTCCHH
T ss_pred HHHHHhCCCCcHH
Confidence 9999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.6e-11 Score=132.94 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=156.9
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG-KEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
+++|...+++.. ..+...|..+...|...|++ ++|++.|++.++ ..| +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 45788999999999999999 999999999999 467 57889999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc--------CChh
Q 037236 699 QMQKLHAVKPKLEHYACVVDMLGRA---------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY--------GALK 759 (953)
Q Consensus 699 ~m~~~~~~~p~~~~~~~lv~~l~~~---------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~--------g~~~ 759 (953)
+..+ +.|+...+..+..+|.+. |++++|++.+++... +.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 678888899999999999 999999999998754 45688999999999988 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 760 MGEKVAKTLLELEP---DKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 760 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|...++++++++| +++.+|..++.+|...|++++|...+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998887765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9e-11 Score=126.54 Aligned_cols=273 Identities=14% Similarity=0.085 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
.+......+...|++++|+..|+++.+.. |+.... ...++..+...|.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~~~~ 54 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGNAYF 54 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH------------------------------HHHHHHHHHHHHH
Confidence 44555667788888888888888887642 321100 0233455566677
Q ss_pred hcCChhHHHHHHHhccc---------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhccccc
Q 037236 519 HCEKSSSARVLFDEMED---------KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQLSA 588 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~ 588 (953)
..|++++|...|++..+ .....|..+...|...|++++|+..|++..+.... ++...
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------- 121 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------- 121 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------
Confidence 77777777777765432 12346777888888999999999998887653111 11100
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC--------------------HHHHHHHhhhcC-------C--CCH
Q 037236 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC--------------------LEQSRRVFDRLK-------D--KDV 639 (953)
Q Consensus 589 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~-------~--~~~ 639 (953)
...++..+...|...|+ +++|...+++.. . ...
T Consensus 122 ------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 122 ------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 11233444455555555 555555555432 1 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----h
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----L 710 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 710 (953)
..+..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4677788888888999999988888775310 011 236778888888999999999998887654322222 4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
..+..+..+|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.++
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5677788889999999999988877642 122 447788888899999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-10 Score=116.14 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=163.7
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIG 647 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 647 (953)
.|+..+...-..+...|++++|...+..+.+....++...+..+...|.+.|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35567777778888999999999999999998765677777779999999999999999999876 346678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHH
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKPD-T-------FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACV 716 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 716 (953)
.|...|++++|++.|++.++ ..|+ . ..|..+...+...|++++|+..|+.+++ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999999 4674 4 4578888899999999999999999865 5675 5677788
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 717 VDMLGRAGKL--DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 717 v~~l~~~g~~--~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
..+|...|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.+...|+.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 8888776654 3332221 22333333332 3456778999999999999999999998888877543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-11 Score=132.72 Aligned_cols=268 Identities=13% Similarity=0.035 Sum_probs=197.2
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCChhHHHHHHHhccc---------CCccc
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEKSSSARVLFDEMED---------KSLVS 540 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~ 540 (953)
..+..+...+...|+++.|...+..+++.+.... ..++..+...|...|++++|...|++..+ .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677889999999999999999855422 14788889999999999999999987653 13357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 541 WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
|..+...|...|++++|+..|++..+.... .+.. .....+..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL-------------------------------SEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH-------------------------------HHHHHHHHHHHHHH
Confidence 888889999999999999999987653100 0000 02234455566666
Q ss_pred hcCC-----------------HHHHHHHhhhcC-------C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 037236 620 KCGC-----------------LEQSRRVFDRLK-------D--KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP- 672 (953)
Q Consensus 620 ~~g~-----------------~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P- 672 (953)
..|+ +++|...|++.. . .....|..+...|...|++++|+..|++..+. .|
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~ 255 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI--ARE 255 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--HHh
Confidence 6666 666666665543 1 12347778888899999999999999988763 22
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 673 --D----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 673 --~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
+ ..++..+...+...|++++|..+|+++.+...-..+ ...+..+..+|.+.|++++|.+.+++...
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 236788888999999999999999888664322122 46678888999999999999999887643
Q ss_pred CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 739 EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 739 ~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.++ ..++..+...+...|+++.|...+++++++.+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 122 34778888889999999999999999998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=143.17 Aligned_cols=163 Identities=10% Similarity=0.145 Sum_probs=145.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...++.|...|.+.|++++|.+.|++.. +.+..+|+.+...|.+.|++++|++.|++.++ +.| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678889999999999999999999876 45688999999999999999999999999999 678 5788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~ 759 (953)
++...|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... .| +...|..|+..+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 5677 78899999999999999999999998754 44 5789999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 037236 760 MGEKVAKTLLELEPD 774 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~ 774 (953)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-10 Score=123.24 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcCChhHHHHHHHhccc-----C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 037236 513 LLSLYMHCEKSSSARVLFDEMED-----K----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC 583 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 583 (953)
....+...|++++|...|++..+ + ...+|..+...|...|++++|+..+++..+.-...+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----------
Confidence 34455666777777777666532 1 1235666666666777777777666665442100000
Q ss_pred ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 584 SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
. ......+++.+...|...|++++|...|++... ++ ..+|..+...|...|+
T Consensus 179 -----~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 179 -----Y--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp -----T--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----c--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 0 000123556677777788888888777776541 11 1367777778888888
Q ss_pred hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhcCC-
Q 037236 655 GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGRAGK- 725 (953)
Q Consensus 655 ~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~~g~- 725 (953)
+++|++.|++..+. +..| ...++..+..++...|++++|..++++..+...-.++ ...+..+..+|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888877662 2224 3456777777888888888888888777553211112 2234556667777777
Q ss_pred --HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 726 --LDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 726 --~~eA~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
+++|++++++....|+ ..++..+...+...|+++.|...+++++++
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6777777766543222 223444444555555555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=111.11 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLG 721 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~ 721 (953)
.+...+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.+. .|+ ...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3333444444444444444444331 22 3333444444444444444444444444332 121 334444444455
Q ss_pred hcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 722 RAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+.|++++|.+.++++.. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554444321 2345566666666777777777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 037236 800 QRMKE 804 (953)
Q Consensus 800 ~~m~~ 804 (953)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-10 Score=117.90 Aligned_cols=194 Identities=9% Similarity=0.059 Sum_probs=157.2
Q ss_pred CccHHHHHHHHHH-------hcCCH-------HHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 607 DAFVACSIIDMYA-------KCGCL-------EQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 607 ~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
++.+|..++..+. +.|++ ++|..+|++.. +.+...|..++..+...|++++|.++|+++++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~- 127 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 127 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Confidence 4555555555554 35775 89999999765 33667999999999999999999999999999
Q ss_pred CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCCh
Q 037236 669 GHKPD-TF-TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLG-RAGKLDDAFKLIIEMPE--EADA 742 (953)
Q Consensus 669 g~~P~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~-~~g~~~eA~~~~~~~~~--~~~~ 742 (953)
+.|+ .. .|..++..+.+.|++++|..+|+++++ ..|+ ...|...+.... ..|++++|.++|++... +.++
T Consensus 128 -~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 128 -IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp -SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred -ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6774 33 799999999999999999999999976 3344 455544444422 37999999999998754 4568
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLEL---EPD-KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
..|..++..+...|+++.|..+++++++. .|+ ....+..+++++...|++++|..+.+.+.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999995 554 6778889999999999999999988877664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=126.96 Aligned_cols=236 Identities=12% Similarity=0.110 Sum_probs=153.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV---QPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSI 614 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 614 (953)
..+|..+...|...|++++|+.+|+++.+... .++. ......+..+
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------------------------------~~~~~~~~~l 75 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-------------------------------PDVATMLNIL 75 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-------------------------------HHHHHHHHHH
Confidence 35788889999999999999999999876310 0000 0123445566
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFT 676 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t 676 (953)
...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.| ...+
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 6677777777777777766541 12446777788888888888888888887764 2223 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CC
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----------EA 740 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~ 740 (953)
+..+...+...|++++|..+|+.+.+.. +..|. ...+..+..+|.+.|++++|.+.++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 7777888888888888888888876531 11333 45677788888888888888888876542 11
Q ss_pred -Chh------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 -DAG------IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 -~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
... .+..+...+...+.++.+...++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112 2223333344556677777788888888899999999999999999999999998776643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-10 Score=107.22 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=144.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMAC 684 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~ 684 (953)
..+..+...|...|++++|...|+++. +.+...|..+...+...|++++|+..++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 456677888999999999999999987 347788999999999999999999999999984 45 677888999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
...|++++|..+++.+.+.. ..+...+..+..+|.+.|++++|.+.++++.. +.+..+|..+...+...|+++.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997742 23477888899999999999999999988753 446789999999999999999999
Q ss_pred HHHHHHhccCCCCcchH
Q 037236 763 KVAKTLLELEPDKAENY 779 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~ 779 (953)
..+++++++.|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999877543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-10 Score=125.32 Aligned_cols=196 Identities=13% Similarity=0.090 Sum_probs=150.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC---
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKD-----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD--- 673 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~--- 673 (953)
..++..+...|...|++++|...+.+.. .++ ..+++.+...|...|++++|++.|++.++... .++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3566778888999999998888888765 122 35788899999999999999999999886311 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCh--
Q 037236 674 -TFTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EADA-- 742 (953)
Q Consensus 674 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~~-- 742 (953)
..++..+...|...|++++|..+|++..+.. +..|. ...+..+..+|.+.|++++|.+.+++... .+++
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2478889999999999999999999987632 23244 66788999999999999999999987643 1222
Q ss_pred -hHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 743 -GIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 743 -~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..+...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 235667777788888 77777777765 34455667888999999999999999998777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=127.35 Aligned_cols=241 Identities=12% Similarity=0.059 Sum_probs=164.8
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhccc--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMED--------K---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI 574 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 574 (953)
+..++..+...|...|++++|...|+++.+ . ....|..+...|...|++++|+..|++.......
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK---- 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 456788899999999999999999998764 2 2346788889999999999999999988753100
Q ss_pred hHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHH
Q 037236 575 SIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWN 643 (953)
Q Consensus 575 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~ 643 (953)
............+..+...|...|++++|...|+++.. .....|.
T Consensus 102 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 ------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00000001234566677778888888888888776541 1345688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCC-
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH------AVKPK- 709 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~- 709 (953)
.+...|...|++++|++.|+++.+. +-.| ...++..+..++...|++++|..+|+++.+.. ...|.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8889999999999999999998874 2244 34578888999999999999999999987531 12222
Q ss_pred ------hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 710 ------LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 710 ------~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
...+..+...+...+.+.+|...++.... .| +..+|..+...+...|+++.|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11222333444555666666667766653 23 4668899999999999999999999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.14 E-value=9.7e-08 Score=111.14 Aligned_cols=213 Identities=9% Similarity=-0.014 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH-HHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSR-RVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
....+++.++... .....+|-..+..+.+.|+.++|. .+|++.. +++...|-..+...-..|++++|.++|++++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445676666653 337788888888888999999996 9998776 4567778889999999999999999999998
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC-
Q 037236 667 ALGH---------KPD------------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG- 724 (953)
Q Consensus 667 ~~g~---------~P~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g- 724 (953)
.... .|+ ...|...+....+.|..+.|..+|..+++..+ .+....|...+.+-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 7310 142 23577778888888999999999999976411 112344544444445555
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+.+.|.++|+.... +.++..|..++......|+.+.|+.+++++++..|+ ....+......-...|..+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48999999987754 457788999999888999999999999999999883 4456777788888899999999999
Q ss_pred HHHHHC
Q 037236 800 QRMKER 805 (953)
Q Consensus 800 ~~m~~~ 805 (953)
+++.+.
T Consensus 565 ~R~~~~ 570 (679)
T 4e6h_A 565 KRFFEK 570 (679)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-08 Score=110.60 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=142.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKD----------K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK--P--DTF 675 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P--~~~ 675 (953)
...+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45677788888999998888886641 1 2345667788899999999999999998874221 1 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhCCCC-CC-----hhH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA-----CVVDMLGRAGKLDDAFKLIIEMPEE-AD-----AGI 744 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~lv~~l~~~g~~~eA~~~~~~~~~~-~~-----~~~ 744 (953)
++..+...+...|++++|..++++......-......+. .++..+...|++++|...+++.... |. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677888889999999999999999865432211111222 2345577999999999999988642 21 225
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+..+...+...|+++.|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777888889999999999999998874432 24778889999999999999997766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-09 Score=109.86 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCchHHHHHHHHHHHCCCccCC
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYAGS----------EKWDDVRMMRQRMKERGLQKEA 811 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~ 811 (953)
+..+...+...|+++.|...++++++..|++ +.++..++.+|... |++++|...++.+.+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----- 225 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----- 225 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----
Confidence 3566778899999999999999999999984 45889999999977 99999999988776532
Q ss_pred ceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHh
Q 037236 812 GCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISK 851 (953)
Q Consensus 812 ~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 851 (953)
..+|...+....+.++...+.+
T Consensus 226 ------------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2467777788888887777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=108.20 Aligned_cols=140 Identities=9% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
..+...|++++|++.+++... ..| +...+..+...|...|++++|++.|++.++ +.|+ ...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556667777777776655 344 344566677777777777777777777765 4555 666777777777777
Q ss_pred CHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 725 KLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEK-VAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 725 ~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
++++|+..+++... .| ++.+|..+...+...|+.+.+.+ .++++++++|+++.+|.+.+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777776543 34 56788888888888998876555 4699999999999999999999998885
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-09 Score=115.53 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=146.9
Q ss_pred ccccchHHHHHHHHHHHHcCCC-C----CccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CC-----CHHHHHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKAILT-N----DAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DK-----DVTSWNAIIGG 648 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~li~~ 648 (953)
...|+++.|...+..+.+.... + ....+..+...|...|++++|...+.+.. .+ ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3445555555555555432110 1 23456677888888888888887777654 11 13467788888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCC-hhHHHHHHHHH
Q 037236 649 HGIHGYGKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA--VKPK-LEHYACVVDML 720 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~~~~lv~~l 720 (953)
|...|++++|++.|++.++. +-.+ ...++..+..++...|++++|..+|++..+... ..|. ...+..+..+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88999999999988887763 1111 234677788888899999999999888865221 2233 56677888889
Q ss_pred hhcCCHHHHHHHHHhCCC------CCC-hhHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 721 GRAGKLDDAFKLIIEMPE------EAD-AGIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~------~~~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
.+.|++++|.+.+++... .|. ...+..+...+...|+ ++.|...+++ ....|+....+..++.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence 999999999888876532 122 2344555555666677 6666666655 2233455667788999999999
Q ss_pred CchHHHHHHHHHH
Q 037236 791 KWDDVRMMRQRMK 803 (953)
Q Consensus 791 ~~~~a~~~~~~m~ 803 (953)
++++|...+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998777664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=111.10 Aligned_cols=184 Identities=8% Similarity=0.013 Sum_probs=131.6
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKD-------K--DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---D----TFTFV 678 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~----~~t~~ 678 (953)
+..|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++.++. .| + ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 3456677777777777776541 1 1457888899999999999999999988763 23 1 35788
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---Ch-----hH
Q 037236 679 GILMACNHA-GLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA---DA-----GI 744 (953)
Q Consensus 679 ~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~---~~-----~~ 744 (953)
.+..+|... |++++|+..|++..+...-..+ ...+..+..+|.+.|++++|++.+++... .| .. ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888999996 9999999999998764321111 35678889999999999999999987643 22 21 15
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCchHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN-----YVLVSNIYA--GSEKWDDVRMMRQ 800 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 800 (953)
|..++..+...|+++.|...++++++++|+.... +..+...|. ..+++++|.+.++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6777778889999999999999999999987654 344556664 4567888777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-08 Score=109.77 Aligned_cols=226 Identities=11% Similarity=0.077 Sum_probs=159.7
Q ss_pred HHHHhcCChhHHHHHHHhccc-----CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhc
Q 037236 515 SLYMHCEKSSSARVLFDEMED-----KS----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACS 584 (953)
Q Consensus 515 ~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~ 584 (953)
..+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.... ++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------ 176 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------------ 176 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT------------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC------------
Confidence 345566667777666665532 11 234555666666666666666666665442100 00
Q ss_pred cccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 585 QLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
.. ....+++.+...|...|++++|...|++... ++ ..+++.+...|...|+
T Consensus 177 -------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 177 -------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00 0234566788888899999999888887652 22 3478888999999999
Q ss_pred hHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhcCC--
Q 037236 655 GKEAIELFEKMLALG---HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGRAGK-- 725 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g---~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~~g~-- 725 (953)
+++|++.|++.++.. ..| ...++..+..++...|++++|..++++..+...-.++ ...+..+...|...|+
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999988710 133 3567888999999999999999999999875443222 4456777778888888
Q ss_pred -HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 726 -LDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 726 -~~eA~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
+++|++.+++....|+ ...+..+...+...|+++.|...+++++++
T Consensus 318 ~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 318 KIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999998654333 346678888899999999999999997754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-08 Score=105.51 Aligned_cols=215 Identities=11% Similarity=-0.064 Sum_probs=139.5
Q ss_pred ChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 522 KSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK 601 (953)
Q Consensus 522 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 601 (953)
++++|...|++. ...|...|++++|++.|.+..+.... .++...
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~---------- 75 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKK---------------AGNEDE---------- 75 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHH---------------TTCHHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHH---------------hCCHHH----------
Confidence 366676666554 44567778888888777766542100 000000
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC
Q 037236 602 AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIH-GYGKEAIELFEKMLALGHK 671 (953)
Q Consensus 602 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~ 671 (953)
...+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++ +.
T Consensus 76 -----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~ 148 (292)
T 1qqe_A 76 -----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WY 148 (292)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HH
Confidence 123455566666667777777666665541 11 34677888888886 999999999998887 33
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 672 PD-------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-----EHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 672 P~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
|+ ..++..+...+...|++++|+.+|++..+...-.+.. ..|..+..++...|++++|+..+++...
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 31 3467888889999999999999999887632222222 1467778888899999999999988754
Q ss_pred CCCh------hHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcchH
Q 037236 739 EADA------GIWSSLLRSCR--TYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 739 ~~~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
.|+. ..+..++.++. ..++++.|...++++.+++|.+....
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 3432 13445555554 34568888888888888888654433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-09 Score=109.98 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=157.0
Q ss_pred ccccchHHHHHHHHHHHHc-------CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKA-------ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWNAI 645 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 645 (953)
...|+++.|...+....+. ..+....++..+...|...|++++|...|+++.. ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456677777766655542 2223466788899999999999999999987651 134578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC-hhH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK-LEH 712 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 712 (953)
...|...|++++|++.|++.++. .-.| ...++..+...+...|++++|..+|+++.+.. +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 1134 45678889999999999999999999987641 11343 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC----------CC-ChhHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE----------EA-DAGIWSSLLRSCRTYGA------LKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~ 775 (953)
+..+..+|.+.|++++|.+.++++.. .+ ....|..+.......+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88899999999999999999876542 12 23455555444444333 333333344434445677
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.++..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999999999998876643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.4e-09 Score=122.94 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=116.1
Q ss_pred HhcCCHHHHHHHhhhcC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 619 AKCGCLEQSRRVFDRLK-----------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
...|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++++ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45666777766666554 34556677777777777777777777777777 355 55667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
.|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++ ++.+++... +.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777765 4454 5667777777777777777 777766543 3356677777777777788888888
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888777777777777766655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-08 Score=100.41 Aligned_cols=179 Identities=13% Similarity=0.034 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC--CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK--DKD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFV 678 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~ 678 (953)
..+..+...+.+.|++++|...|+++. .|+ ...+..+..+|...|++++|+..|+++++. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 344455566666777777777777655 122 235566666677777777777777776663 4432 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 679 GILMACNH------------------AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 679 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
.+..++.. .|++++|...|+.+++.+ |+ ...+..+. +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHH----HHHHHHHHH---------
Confidence 44444433 344555555555554422 22 11111110 000000000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA---ENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
......+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455667889999999999999999999986 5799999999999999999999998887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=104.91 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=143.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C-HHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-D---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---D-TFT 676 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~-~~t 676 (953)
+...+..+...+.+.|++++|...|+++. .| + ...|..+..+|...|++++|+..|++.++. .| + ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 45566677888889999999999999887 23 3 567888999999999999999999999984 44 2 355
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCChh-HH--------------HHHHHHHhhcCCHHHHHHHH
Q 037236 677 FVGILMACNH--------AGLVENGLKYFSQMQKLHAVKPKLE-HY--------------ACVVDMLGRAGKLDDAFKLI 733 (953)
Q Consensus 677 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~-~~--------------~~lv~~l~~~g~~~eA~~~~ 733 (953)
+..+..++.. .|++++|+..|+++++.++-.|... .. ..+...|.+.|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777888888 9999999999999988554333321 11 55688899999999999999
Q ss_pred HhCCC-CCC----hhHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCchH
Q 037236 734 IEMPE-EAD----AGIWSSLLRSCRTY----------GALKMGEKVAKTLLELEPDKAE---NYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 734 ~~~~~-~~~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 794 (953)
+++.. .|+ ...|..+..++... |+++.|...++++++..|+++. ++..+..++...|++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 87743 343 34677777777765 8899999999999999999864 44556666665555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=106.51 Aligned_cols=171 Identities=9% Similarity=-0.041 Sum_probs=138.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 625 EQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 625 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
+.....+....+.+...+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3344445555555666777888889999999999999999998 577 667888899999999999999999998854
Q ss_pred cCCCCChhHHHH-HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cch
Q 037236 704 HAVKPKLEHYAC-VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--AEN 778 (953)
Q Consensus 704 ~~~~p~~~~~~~-lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~ 778 (953)
..|+...... ..-.+.+.|+.++|.+.+++... +.+...+..+...+...|+++.|...++++++.+|++ +.+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4566433322 23346778888889888877653 4567899999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 037236 779 YVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
+..|+.+|...|+.++|...++
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHH
Confidence 9999999999999999988544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-07 Score=95.18 Aligned_cols=174 Identities=9% Similarity=-0.013 Sum_probs=123.0
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 556666554 3455566677778888888888888888877754323 445677777888888888888888888865
Q ss_pred hcCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 037236 703 LHAVKP-----KLEHYACVVDM--LGRAG--KLDDAFKLIIEMPEE-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL- 771 (953)
Q Consensus 703 ~~~~~p-----~~~~~~~lv~~--l~~~g--~~~eA~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 771 (953)
..| +-.....|..+ ....| ++.+|..+|+++... |+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 455 23333444433 33334 888888888887653 44233334444677889999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 772 ---------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 772 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+|+|+.++..++.++...|+ +|.+++.++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 888888888874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=99.34 Aligned_cols=156 Identities=7% Similarity=-0.018 Sum_probs=122.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD--K-DVTSWNA----------------IIGGHGIHGYGKEAIELFEKMLALGHKP-D 673 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~P-~ 673 (953)
....+.+.|++++|...|++... | +...|.. +...|...|++++|+..|++.++ ..| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 44566678888888888887762 2 3445666 88899999999999999999999 578 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCh--hHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK--LDDAFKLIIEMPEEADA--GIWSSL 748 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~--~~eA~~~~~~~~~~~~~--~~~~~l 748 (953)
...+..+..++...|++++|...|+++++ +.|+ ...|..+..+|...|. .+++...++... .|++ ..|..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence 78899999999999999999999999987 5676 7788889888876654 455667777665 3443 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..++...|+++.|+..+++++++.|++
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 667778899999999999999999964
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-08 Score=114.68 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=125.7
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..| +..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888999888876 34678899999999999999999999999998 567 577889999999999999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 037236 697 FSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---GALKMGEKVAKTLLE 770 (953)
Q Consensus 697 ~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 770 (953)
|++..+ +.|+ ...+..+..+|.+.|++++|.+.+++... +.+...|..+...+... |+.+.|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999977 3455 77889999999999999999999988753 34677899999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 037236 771 LEPDKAENYVLVS 783 (953)
Q Consensus 771 l~p~~~~~~~~l~ 783 (953)
.+|++..++..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-09 Score=98.49 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
|...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|++.+++... +.++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556678899999999887743 4555 55567789999999999999999998754 446889999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM-RQRMKE 804 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 804 (953)
+++.|...++++++++|+++.++..++.+|...|++++|.+. .++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 354443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-07 Score=99.48 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC----CC-CHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLK----DK-DVTSWNA-----IIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTF 677 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~----~~-~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~ 677 (953)
+..+...+...|++++|...+++.. .+ +...|.. .+..+...|+.++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 4445555555666666665555432 11 1111211 2222455666666666666554422111 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
..+..++...|++++|...++...... +..++ ...+..+..++.+.|+.++|.+.+++.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666666666666666554321 11112 234455556666666666666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-08 Score=116.09 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=138.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++.++ ..| +...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 56778888899999999999999999877 45788999999999999999999999999999 577 5678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCC--
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGA-- 757 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~-- 757 (953)
++...|++++ +..|+++++ +.|+ ...|..+..+|.+.|++++|++.+++... .|+ ...|..+..++...|+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 9999999999 999999977 5566 77899999999999999999999999875 455 5678788777766555
Q ss_pred ---hhHHHHHHHHHhccCCCCcchHHH
Q 037236 758 ---LKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 758 ---~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
.+...++.+.+.++.++++..+..
T Consensus 586 ~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 586 EVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp -CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 455666666666676666655433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-08 Score=88.62 Aligned_cols=126 Identities=23% Similarity=0.372 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
.|..+...+...|++++|+.+|+++.+. .| +..++..+...+...|++++|..+|+++.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 3555666666666666666666666653 23 4455555666666666666666666666442 122
Q ss_pred HhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 22333334444444444444444444444455555555555555555555555555554
Q ss_pred HHH
Q 037236 800 QRM 802 (953)
Q Consensus 800 ~~m 802 (953)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-08 Score=88.25 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.|..++..+.+.|++++|.++++++.. +.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 455566677777777777777766532 345677888888888889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHCC
Q 037236 790 EKWDDVRMMRQRMKERG 806 (953)
Q Consensus 790 g~~~~a~~~~~~m~~~~ 806 (953)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999988876643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=104.02 Aligned_cols=223 Identities=10% Similarity=0.011 Sum_probs=156.5
Q ss_pred hcCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc------CC-CCCccHHHHHH
Q 037236 550 QNKLPVEAIVLFRRMFSI-------GVQPCEISIVSILSACSQLSALRLGKETHCYALKA------IL-TNDAFVACSII 615 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 615 (953)
..|++++|+.+|++..+. .......++..+...+...|++++|...+..+.+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356666666666665541 21223456677778889999999999999888764 22 22456788899
Q ss_pred HHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD----------K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTF 677 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~ 677 (953)
..|...|++++|...|.+... | ...+|..+...|...|++++|+..|+++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999998751 1 3457888999999999999999999999884 1144 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHhhcC------CHHHHHHHHHhCCCC-C-Ch
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLH------AVKPK-LEHYACVVDMLGRAG------KLDDAFKLIIEMPEE-A-DA 742 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~lv~~l~~~g------~~~eA~~~~~~~~~~-~-~~ 742 (953)
..+..++...|++++|..+++++.+.. ...|. ...+..+...+...+ .+.++...++..... | ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 899999999999999999999997641 12333 333444444443333 355555555555432 2 35
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+|..+...+...|+++.|...+++++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 578889999999999999999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=96.68 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=54.2
Q ss_pred HHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 729 AFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--AENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 729 A~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|++.+++... .| ++..|..+...+...|+++.|...++++++.+|+. +.++..++.+|...|+.++|...+++.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4444444322 23 46777777788888888888888888888888865 558888888999999998888866543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-07 Score=94.07 Aligned_cols=190 Identities=13% Similarity=0.187 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 610 VACSIIDMYAKCG--CLEQSRRVFDRLK---DKDVTSWNAIIGGH----GIH---GYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 610 ~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
+++.-...+...| ++++++..++.+. +++..+|+.-...+ ... +++++++++++++++ ..| |..+
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 4444445555556 7777777777665 45566777655544 444 678888888888888 466 7777
Q ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC------HHHHHHHHHhCCC--CCChhHH
Q 037236 677 FVGILMACNHAGLVE--NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK------LDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~------~~eA~~~~~~~~~--~~~~~~~ 745 (953)
|..-...+.+.|.++ +++++++.+++ ..|. ...|+.-..++.+.|+ ++++++.++++.. +.|...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 777777777788877 88888888876 3343 4556555556666665 7888888876643 4578888
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGA-LKMGEKVAKTLLELE---PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+...+...|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|.++.+.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888877776 455667888888776 77888888888899888898999888888765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=89.42 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=81.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHH
Q 037236 670 HKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 670 ~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~ 745 (953)
+.|+ ...+......+.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4553 34566666777777777777777777665 3444 56666677777777777777777766543 3456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
..++.++...|+++.|...++++++++|+++.++..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888889999999999999999998888777765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-07 Score=94.25 Aligned_cols=240 Identities=9% Similarity=-0.020 Sum_probs=159.0
Q ss_pred HhcCChhHHHHHHHhcccCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHH
Q 037236 518 MHCEKSSSARVLFDEMEDKSLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETH 596 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 596 (953)
.-.|.+..+..-...+...+.. .-.-+..+|...|++.... .-.|....+.. +..+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~-la~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDL-YVQFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHH-HHHHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHH-HHHHhccc----HHHHH
Confidence 3457777766655554432222 1222346677777665321 11232222222 22222222 44455
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 037236 597 CYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK 671 (953)
Q Consensus 597 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 671 (953)
+.....+ .++......+..+|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 5555444 33455556788899999999999999998742 3566777888999999999999999999988 57
Q ss_pred C-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 672 P-----DTFTFVGILMA--CNHAG--LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 672 P-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 36666666666 33334 899999999999653 35433334445589999999999999876533
Q ss_pred --------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 739 --------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 739 --------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
+.|+.+...++......|+ .|.+.++++.+.+|+++-..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 2356667677666666786 88999999999999998654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-08 Score=89.27 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=91.1
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 705 AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 705 ~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
-+.|+ ...+......|.+.|++++|++.|++... +.++.+|..+..++...|+++.|...++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 36777 67788899999999999999999998753 4578899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++.+|...|++++|.+.+++..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998887765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=91.40 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=133.5
Q ss_pred HHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG----LVENGLKYFSQMQ 701 (953)
Q Consensus 627 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 701 (953)
|.+.|.+.. ..++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3467777778888888888888888888888754 55667777777777 6 8889999988885
Q ss_pred HhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 037236 702 KLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRT----YGALKMGEKVAKTLL 769 (953)
Q Consensus 702 ~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 769 (953)
+ . -++..+..|..+|.. .+++++|++++++.....+ +..+..|...|.. .+|.+.|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4 1 246677778888877 7899999999988776444 7888888888887 789999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHHHCC
Q 037236 770 ELEPDKAENYVLVSNIYAGS-E-----KWDDVRMMRQRMKERG 806 (953)
Q Consensus 770 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 806 (953)
++ |.++.++..|+.+|... | ++++|...+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77888999999999864 3 8999999888877755
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-08 Score=91.97 Aligned_cols=100 Identities=5% Similarity=-0.051 Sum_probs=84.5
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 705 AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 705 ~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
.+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35565 56677777778888888888888877653 4467889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++.+|...|++++|...+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998877765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=113.96 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=116.5
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 037236 652 HGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA 729 (953)
.|++++|++.|++..+ ..| +...+..+...+...|++++|...|++..+ +.|+ ...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 467 578899999999999999999999999876 5666 78899999999999999999
Q ss_pred HHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCchHHHHHHHHHHH
Q 037236 730 FKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS---EKWDDVRMMRQRMKE 804 (953)
Q Consensus 730 ~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 804 (953)
.+.+++... +.+...|..+...+...|++++|...++++++++|+++.++..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988753 346789999999999999999999999999999999999999999999999 999999987766644
Q ss_pred C
Q 037236 805 R 805 (953)
Q Consensus 805 ~ 805 (953)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=92.14 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=81.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4554 55566677778888888888888876643 44678888888889999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=91.19 Aligned_cols=159 Identities=11% Similarity=0.052 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVG----------------ILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..+-.....+...|++++|+..|++.++ ..| +...+.. +..++...|++++|+..|++.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556678899999999999999999 578 4456767 88899999999999999999987
Q ss_pred hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC--hhHHHHHHHHHhccCCCCcc
Q 037236 703 LHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA--LKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 703 ~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~ 777 (953)
+.|+ ...+..+..+|...|++++|++.+++... +.++.+|..++..+...|+ .+.+...+++++...|. ..
T Consensus 83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (208)
T 3urz_A 83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QY 158 (208)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HH
T ss_pred ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hH
Confidence 4565 78899999999999999999999998754 4467889999888866653 44556666666544332 22
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 778 NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 778 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.+..++..+...|++++|...+++..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456678889999999999998877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-06 Score=88.76 Aligned_cols=158 Identities=7% Similarity=0.058 Sum_probs=129.9
Q ss_pred CCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC------
Q 037236 622 GCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK--EAIELFEKMLALGHKP-DTFTFVGILMACNHAGL------ 689 (953)
Q Consensus 622 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~------ 689 (953)
++++++..+++.+. +++..+|+--.-.+...|.++ ++++.++++++. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 77889999998876 678889998888888889888 999999999994 66 77788877777777776
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCChhHHHHHHHHHHhcCChhHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD-AFKLIIEMPE-----EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e-A~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
+++++++++.++. ..|+ ...|+.+..++.+.|+..+ +.++.++... ..++..|..++..+...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999887 4565 7788888888989888554 5567776543 346789999999999999999999
Q ss_pred HHHHHHhc-cCCCCcchHHHHHH
Q 037236 763 KVAKTLLE-LEPDKAENYVLVSN 784 (953)
Q Consensus 763 ~~~~~~~~-l~p~~~~~~~~l~~ 784 (953)
++++.+.+ .+|-+...+...++
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988887766554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-08 Score=103.56 Aligned_cols=190 Identities=9% Similarity=-0.078 Sum_probs=142.4
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..+++.++ ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44566778889999999999999999876 44788999999999999999999999999998 567 6678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMG 761 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 761 (953)
++...|++++|...|+...+.. |+ ...+...+....+..+..+... .......++..+...+.. + ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 9999999999999999987633 32 1112222222222222222222 223333455555555533 3 36899999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHH
Q 037236 762 EKVAKTLLELEPDKAENYVLVSNIYAGS-EKWDDVRMMRQRMKE 804 (953)
Q Consensus 762 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 804 (953)
...++++++++|++......+..++... +++++|.+++..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988888888888887 789999998887754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=89.57 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=122.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA-C 684 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a-~ 684 (953)
.....+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 345566778889999999999999987 457788999999999999999999999998773 4544333222211 2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---hhHHHHHHHHHHhcCChh
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---AGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---~~~~~~ll~~~~~~g~~~ 759 (953)
...+...+|...+++..+ ..|+ ...+..+..+|.+.|++++|.+.++++.. .|+ ...|..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 222333457888888876 5566 78888999999999999999999987653 443 568999999999999999
Q ss_pred HHHHHHHHHhc
Q 037236 760 MGEKVAKTLLE 770 (953)
Q Consensus 760 ~a~~~~~~~~~ 770 (953)
.|...+++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-07 Score=93.29 Aligned_cols=170 Identities=11% Similarity=0.088 Sum_probs=110.8
Q ss_pred HHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC
Q 037236 528 VLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTND 607 (953)
Q Consensus 528 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 607 (953)
..+......+...+..+...+.+.|++++|+..|++..+. .|+ +
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~----------------------------------~ 150 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ----------------------------------N 150 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS----------------------------------C
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc----------------------------------c
Confidence 3333333333445556666677777777777777777664 343 4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNA-IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA 683 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a 683 (953)
...+..+...|.+.|++++|...|+++. .|+...+.. ....+...++.++|+..|++..+ ..| +...+..+..+
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~ 228 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 5566677778888888888888888876 344433222 22335666777778888888777 356 56677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+...|++++|...|.++++...-..+...+..|+.+|...|+.++|...+++
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888888888776332222245566667777777776666666554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-07 Score=95.21 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=157.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 037236 551 NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRV 630 (953)
Q Consensus 551 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 630 (953)
.|++++|.+++++..+... .. + +...++++.+...+..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5678899999988775321 11 0 11136677766666544 5678889999999998
Q ss_pred hhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 037236 631 FDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH---KPD--TFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 631 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~P~--~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
|.+... .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+..+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887651 12 34788899999999999999999999876311 222 3567888888988 999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHH
Q 037236 697 FSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 697 ~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
|++.++.+.-..+ ...+..+..+|.+.|++++|++.+++... .++ ...+..++..+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998764321111 46788899999999999999999987653 122 23566666677778999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 037236 765 AKTLLELEPDKAEN-----YVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 765 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 797 (953)
+++++ ++|+.... ...++..| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976654 33445555 5666655544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=85.47 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=79.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4444 44555666677777777777777776543 34677888888888999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998877655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.58 E-value=9.9e-07 Score=88.69 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=128.3
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCC-H---HHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAILTND--AFVACSIIDMYAKCGCLEQSRRVFDRLK--DKD-V---TSWNAI 645 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~---~~~~~l 645 (953)
..+......+...|++++|...+..+.+...... ...+..++..|.+.|++++|...|++.. .|+ . ..|..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445556677889999999999999998654322 3567888999999999999999999876 232 2 245555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 037236 646 IGGHGI------------------HGYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLVENGLKYFSQMQKLHAV 706 (953)
Q Consensus 646 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 706 (953)
..++.. .|+.++|+..|+++++ ..|+.. ....... . ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l------~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----L------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----H------HHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----H------HHHHHHH------
Confidence 555553 5789999999999998 467543 2211111 0 0000111
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
......+...|.+.|++++|+..++++.. .|+ ...+..+..++...|+.+.|...++++....|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223467788889999999988887653 343 246888888899999999999999998888887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.9e-07 Score=88.02 Aligned_cols=145 Identities=9% Similarity=-0.038 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++.++. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456667777788888888887777777777777777777777788887777777773 45 55667777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+++|...|+.+.+...-.+... +...| +...| ...+|..+...+...|+++.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777765221111110 00000 01112 2467788888888889999999999999
Q ss_pred hccCCCCc
Q 037236 769 LELEPDKA 776 (953)
Q Consensus 769 ~~l~p~~~ 776 (953)
+++.|++.
T Consensus 148 l~~~p~~~ 155 (213)
T 1hh8_A 148 TSMKSEPR 155 (213)
T ss_dssp HTTCCSGG
T ss_pred HHcCcccc
Confidence 99998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-07 Score=88.78 Aligned_cols=124 Identities=13% Similarity=-0.000 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRT 754 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~ 754 (953)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|++.+++... +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445555556666666655544 234555555666666666666666666655432 3355677777777777
Q ss_pred cCChhHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 755 YGALKMGEKVAKTLLELEPDKA----------------ENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
.|+++.|...+++++++.|++. .++..++.+|...|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888777776 89999999999999999999998887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=84.19 Aligned_cols=160 Identities=8% Similarity=-0.104 Sum_probs=130.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHG----YGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
++..+..|..+|...|++++|...|++.. ..++..+..|...|.. | +.++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 67778888889999999999999999876 4577788888888887 6 8999999999998754 667778888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHhCCCC-CChhHHHHHH
Q 037236 682 MACNH----AGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGR----AGKLDDAFKLIIEMPEE-ADAGIWSSLL 749 (953)
Q Consensus 682 ~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~-~~~~~~~~ll 749 (953)
..|.. .+++++|..+|++..+ ..|. +..+..|..+|.. .+++++|++++++.... +++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88877 8899999999998854 3443 6788889899988 88999999999887554 5677788887
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHhccCC
Q 037236 750 RSCRTY-G-----ALKMGEKVAKTLLELEP 773 (953)
Q Consensus 750 ~~~~~~-g-----~~~~a~~~~~~~~~l~p 773 (953)
..|... | |.++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777543 3 89999999999988754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-06 Score=87.70 Aligned_cols=159 Identities=8% Similarity=-0.045 Sum_probs=114.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG-HKPDTF----TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYAC 715 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 715 (953)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+.+|+.+.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888887732 122211 2334666667777888888888888763222233 235788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-------C-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-------E-A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYV 780 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-------~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 780 (953)
+...|.+.|++++|++.++++.. . + ...++..++..|...|+++.|...+++++++.++. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888776641 1 1 13478888889999999999999999999875443 67889
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHH
Q 037236 781 LVSNIYAGSEK-WDDVRMMRQRMK 803 (953)
Q Consensus 781 ~l~~~y~~~g~-~~~a~~~~~~m~ 803 (953)
.+|.+|...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599998766553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-07 Score=84.67 Aligned_cols=104 Identities=8% Similarity=-0.046 Sum_probs=87.0
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHH
Q 037236 670 HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 670 ~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~ 745 (953)
+.| +...+..+...+...|++++|...|+.+++ +.|+ ...|..+..+|.+.|++++|++.|++... +.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 466 455678888888999999999999998876 4565 77888889999999999999999887753 4467889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
..+..++...|+++.|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=86.18 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=79.3
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
|++++. +.| +...+..+...+...|++++|...|+..++ +.|+ ...|..+..+|.+.|++++|++.+++...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 445 344566666677777777777777777655 3343 55666677777777777777777766542
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 739 -EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 739 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
+.++..|..+..++...|+++.|...+++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 3456778888888888888999999999999999988765443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.6e-07 Score=79.36 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSC 752 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~ 752 (953)
.++..+...+...|++++|..+|+++.+.. ..+...+..+...+.+.|++++|...++++.. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555555666666666665554421 11244555556666666666666666655432 34566777888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
...|+++.|...++++++++|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999999999999999999999988887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-05 Score=88.99 Aligned_cols=125 Identities=12% Similarity=0.042 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|...+..+.++|..+.|..+|++. .. ..++...|......-. ..++++.|..+|+...+.++-. +..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 46777788777788899999999998 32 1124444443222222 2346999999999998865433 445666788
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
...+.|+.+.|..+++++. .....|...+.--..+|+.+.+..++++.++
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999984 3577899999888889999888888887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=83.88 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|+...+. .|+ ...+..+..++.+.|++++|++.+++... +.+..+|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555555442 222 44455555555555566665555554432 334667777888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSN--IYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++++|+++..+..++. .+...|++++|........+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888899999999999999999888855444 48888999999998776543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-07 Score=79.96 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
...+..+...+...|++++|..+|+.+.+. .| +...+..+...+...|++++|.+.+++... +.+..+|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 344555555555666666666666655442 23 245555566666666666666666655432 334667778888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.+...|+++.|...+++++++.|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888889999999999999999999999999999999888763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-07 Score=80.63 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
..+..+...+...|++++|..+|+...+ ..|+ ...+..+..+|.+.|++++|++.+++... +.+..+|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444555555555555555555555433 2232 44455555555555555555555554432 2346677777788
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888999999999999999999998887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=89.10 Aligned_cols=162 Identities=7% Similarity=-0.080 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hh
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-T----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LE 711 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 711 (953)
.+...+..+...|++++|++.+++.++.....+ . ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888888777422111 1 22344555667788888888888887643221122 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Cc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE----EAD-----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------KA 776 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~ 776 (953)
.|+.+...|...|++++|++.++++.. .|+ ..++..++..|...|+++.|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888888888888888876541 222 257888888899999999999999999887532 26
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHH
Q 037236 777 ENYVLVSNIYAGSEKWDDV-RMMRQRM 802 (953)
Q Consensus 777 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 802 (953)
.+|..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6789999999999999999 6645443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-07 Score=80.66 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
..+..+...+.+.|++++|++.+++... +.++.+|..+..++...|+++.|...++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3455566666777777777777765542 34567888888888888888899999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 037236 789 SEKWDDVRMMRQRMKE 804 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~~ 804 (953)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999987776655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-07 Score=95.23 Aligned_cols=196 Identities=7% Similarity=-0.026 Sum_probs=150.9
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
.|++++|.+++....+.... . .+...|++++|...|.+ ....|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888877664221 1 11115788888888776 356788999999999999998
Q ss_pred HHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 666 LALGH---KP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 666 ~~~g~---~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.+... .| -..+|..+...|...|++++|+..|++.++.+.-..+ ...+..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1357888999999999999999999998765322212 4678888999998 9999999999876
Q ss_pred CC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 737 PE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA------ENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 737 ~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.. ..+ ..++..+...+...|+++.|...+++++++.|++. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 111 45788899999999999999999999999877654 36778888999999999999988766
Q ss_pred H
Q 037236 803 K 803 (953)
Q Consensus 803 ~ 803 (953)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.7e-07 Score=85.16 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH-HHhcCCh--hH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS-CRTYGAL--KM 760 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~-~~~~g~~--~~ 760 (953)
.|++++|...++...+. .|+ ...|..+..+|...|++++|.+.+++... +.++..|..+... +...|++ +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444444444444331 122 34444444444455555555544444322 2345566666666 5566776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777888888888888888888888888888888887776655
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.9e-07 Score=97.15 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACV 716 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 716 (953)
+...|..+...|...|++++|+..|++.++ +.|+...+ ..+++... .|. ...|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 455677777777777888888888877777 34532100 00111110 011 3456666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
..+|.+.|++++|++.+++... +.++..|..+..++...|+++.|...++++++++|+++.++..++.+|...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777666543 34677888888899999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHH
Q 037236 795 VRM-MRQRM 802 (953)
Q Consensus 795 a~~-~~~~m 802 (953)
|.+ .++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 944 55555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=88.28 Aligned_cols=180 Identities=7% Similarity=-0.031 Sum_probs=135.9
Q ss_pred hcCCHHHHHHHhhhcC---CCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCH---------------
Q 037236 620 KCGCLEQSRRVFDRLK---DKDVTSWNAI-------IGGHGIHGYGKEAIELFEKMLALGHKPDT--------------- 674 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~P~~--------------- 674 (953)
..++...|.+.|.++. +.....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4788999999999876 4456788888 4566666666666666665554 34421
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCh----h
Q 037236 675 -------FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADA----G 743 (953)
Q Consensus 675 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~----~ 743 (953)
.....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234566778889999999999987743 3465325666777899999999999999876554433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELE--PD-KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..+..++...|++++|...++++.+-. |. .+...+.++.++.+.|+.++|..+++++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999999999998543 55 556788999999999999999999988877
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-07 Score=100.72 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
.|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.| +..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555443 23445555555555555555555555555555 344 34445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHH--HhhcCCHHHHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDM--LGRAGKLDDAFKLII 734 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~--l~~~g~~~eA~~~~~ 734 (953)
|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555442 222 2233333333 444555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.2e-07 Score=100.70 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
+...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555544 2333 44555555555555555555555554432 2356678888888888899999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHH--HHhcCCchHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNI--YAGSEKWDDVRMMRQ 800 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 800 (953)
|...++++++++|+++.++..++.+ +...|++++|.+..+
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988 888999999998765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-07 Score=86.17 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhhcCCH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM-LGRAGKL 726 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~~~g~~ 726 (953)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+++.+. .|+ ...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4567788888888888774 45 6677888888888889999999988888763 343 5677777777 7788888
Q ss_pred --HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 727 --DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 727 --~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
++|.+.+++... +.+...|..+...+...|+++.|...++++++++|+++.....+
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 899888887653 34577888888899999999999999999999999887654433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=84.90 Aligned_cols=216 Identities=12% Similarity=0.128 Sum_probs=143.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG-CLEQ 626 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~ 626 (953)
..+.+..++|++++.+++.. .|+. ..+++.-...+...| .+++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~----------------------------------ytaWn~R~~iL~~l~~~l~e 107 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAH----------------------------------YTVWQYRFSLLTSLNKSLED 107 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHHTTCCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHh--Cchh----------------------------------HHHHHHHHHHHHHhhhhHHH
Confidence 34445556788888887765 4542 333444444445556 4777
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH--------H
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIH-G-YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE--------N 692 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~--------~ 692 (953)
+...++.+. +++..+|+.-...+... + ++++++++++++++ ..| |...|..-.....+.|.++ +
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 777777765 45677787776666665 6 77888888888887 456 6677766666666666555 7
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC-------HHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh----
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK-------LDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL---- 758 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~-------~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~---- 758 (953)
++++++++++ ..|. ...|+....++.+.|+ ++++++.++++.. +.|...|+-+-+.+...|+.
T Consensus 186 ELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 8888888876 3344 5667777777777775 6788888876643 45778888877777766653
Q ss_pred ----------------hHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 759 ----------------KMGEKVAKTLLELE------PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 759 ----------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.....+..+.... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45667788999999999999999999998865
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-07 Score=83.28 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
..+..+...+...|++++|...|+..++ ..|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455555666666666666666666654 2343 45566666666666666666666665532 3355677777777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
+...|+++.|...+++++++.|+++........+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888888888888888888888888766554433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=87.70 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDM 719 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~ 719 (953)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344556677777777777777776653 46444555666677778888888887765532 11 111 2356667777
Q ss_pred HhhcCCHHHHHHHHHhCCCC---CC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEE---AD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~---~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.+.|++++|++.+++.... |. +..+..+..+++..|+.++|...++++++.+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888766432 32 236677777888889999999999999999997 6554444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-05 Score=82.91 Aligned_cols=158 Identities=11% Similarity=-0.040 Sum_probs=121.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK-PD----TFTFVG 679 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-P~----~~t~~~ 679 (953)
.+..+.+.|++++|...+++... ++ ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999998652 12 113345667777888999999999999984322 23 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CCC-hhHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLH----AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------EAD-AGIWS 746 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~~~-~~~~~ 746 (953)
+..+|...|++++|..+|+.+.+.. +..|. ...|..+...|.+.|++++|++.+++... .+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999997532 22222 45788899999999999999999887642 122 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 037236 747 SLLRSCRTYGA-LKMGEKVAKTLLEL 771 (953)
Q Consensus 747 ~ll~~~~~~g~-~~~a~~~~~~~~~l 771 (953)
.++.++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-07 Score=90.59 Aligned_cols=171 Identities=8% Similarity=-0.019 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
..+......|++++|.+.|+.... .....|..+...+...|++++|+..|++.++ ..|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 344455556777777777764432 2344666777777778888888888888777 33321100000 0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
.+.-. ..+ ....|..+..+|.+.|++++|++.+++... +.+..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 024455566666667777777666665532 34567788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHH-HHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVR-MMRQRMKE 804 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~ 804 (953)
+++++|+++.++..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888776 34444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-05 Score=82.31 Aligned_cols=166 Identities=14% Similarity=-0.028 Sum_probs=108.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
.+...+..+...|++++|++.+.+..+.... .... .. ....+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~-~~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEF-QQ----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHH-HH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhH-HH----------------------------HHHHHHHHHHHHh
Confidence 4455677788899999999999887765321 1100 00 0111233556677
Q ss_pred hcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHH
Q 037236 620 KCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPD-----TFTFVGILMAC 684 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~-----~~t~~~ll~a~ 684 (953)
..|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..+|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 77888888888776531 11 347888888888888888888888887731 01222 25777888888
Q ss_pred HhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHH-HHHHHh
Q 037236 685 NHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDA-FKLIIE 735 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA-~~~~~~ 735 (953)
...|++++|..++++..+.. +..+. ...|..+..+|.+.|++++| ...+++
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888888888876532 11111 45667777777888888777 665655
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-05 Score=79.29 Aligned_cols=190 Identities=10% Similarity=0.025 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC-hHHHHHHH
Q 037236 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCG--CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY-GKEAIELF 662 (953)
Q Consensus 589 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 662 (953)
+++...+.+.+...... +..+|+.-...+.+.| .++++...++.+. ++|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34455555555544332 5555665555666666 3677777777765 4567777776666666776 47777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc---
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHA--------------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--- 723 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--- 723 (953)
+++++ ..| |...|+.....+.+. +.++++++++...+. +.|+ ...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 77777 355 556666555555444 446777777777765 3454 55555554445444
Q ss_pred --------CCHHHHHHHHHhCCC-CCChhHHHHHHHHHH-----hcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 724 --------GKLDDAFKLIIEMPE-EADAGIWSSLLRSCR-----TYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 724 --------g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
+.++++++.++++.. .||. .|..+..+.. ..|..+.....+.++.++||...+.|..|..-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 456777777766653 4553 4543333221 24556677777777777777777766655443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0004 Score=78.31 Aligned_cols=201 Identities=10% Similarity=-0.037 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHH-HHHHHhc
Q 037236 455 KALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSA-RVLFDEM 533 (953)
Q Consensus 455 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~~ 533 (953)
.+..+|++++... +.+...|...+.-+...|+.+.|..+++..++. +.+...+. .|+.....++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 3455666665532 233444554555555566666777777766666 22222221 12222111111 1111110
Q ss_pred c------------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-chHHHHHHHHHHH
Q 037236 534 E------------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS-ALRLGKETHCYAL 600 (953)
Q Consensus 534 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~ 600 (953)
. ......|...+..+.+.+..+.|..+|.+. .. ..++...|......-...+ +.+.|+.+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001134555555555556666777777666 21 1112222211110001112 4666666666665
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
+... .++..+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++.
T Consensus 348 ~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5421 123344445565566666666666666653 244555555555555566555555555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=79.34 Aligned_cols=151 Identities=13% Similarity=-0.000 Sum_probs=85.3
Q ss_pred hcCCHHHHHH---HhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 620 KCGCLEQSRR---VFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 620 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
..|++++|.+ .+..-+......+..+...|...|++++|+..|++.++. |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433345567777777778888888888888776652 1122 3455667777777788888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCCh
Q 037236 692 NGLKYFSQMQKLHAVKP-K----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p-~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~ 758 (953)
+|..++++..+...-.+ + ...+..+...+...|++++|.+.+++... .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88877777655422122 1 23455566666666666666666655321 111 11233444444444555
Q ss_pred hHHHHHHHHHhc
Q 037236 759 KMGEKVAKTLLE 770 (953)
Q Consensus 759 ~~a~~~~~~~~~ 770 (953)
+.|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.2e-06 Score=72.40 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|.+.+++... +.+...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444444444444444444331 22 233444444445555555555554444321 234556677777777
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
..|+++.|...++++++++|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777888888888888888888877777666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.7e-06 Score=75.39 Aligned_cols=107 Identities=10% Similarity=-0.059 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33344444444444444444444433 1222 34444444444445555555444444322 234556666666777
Q ss_pred hcCChhHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELE------PDKAENYVLVSNIY 786 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 786 (953)
..|+++.|...++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777777777 77776666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=77.74 Aligned_cols=93 Identities=8% Similarity=-0.083 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.+..+...+.+.|++++|+..+++... +.++..|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455567778888888888888887653 346778888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRMKE 804 (953)
Q Consensus 790 g~~~~a~~~~~~m~~ 804 (953)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.4e-06 Score=76.06 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.+++... +.++.+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45555666666666666666666655432 3346677788888888888888888888888899999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++...+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.3e-06 Score=76.96 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
..+...|...|++++|...|++.. +.+...|..+...+...|++++|++.|++..+. .| +..++..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 334444455555555555555433 234444555555555555555555555555542 23 334444445555555
Q ss_pred CCHHHHHHHHHHHHH
Q 037236 688 GLVENGLKYFSQMQK 702 (953)
Q Consensus 688 g~~~~a~~~~~~m~~ 702 (953)
|++++|..+|+++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-06 Score=78.95 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
...+..+...+...|++++|+.+|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555556666666666666666554 2332 45556666666666666666666655432 335677888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
++...|+++.|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88889999999999999999999999876655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=76.21 Aligned_cols=93 Identities=5% Similarity=-0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE-------NYVLV 782 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 782 (953)
.+..+...+.+.|++++|++.|++... +.++.+|..+..++...|+++.|...++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344556666666666666666665432 335667888888888888888888888888888887654 67778
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999998776544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-06 Score=73.60 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD--KAENYVLVSNI 785 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 785 (953)
...+..+...+.+.|++++|...+++... +.+..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44455566666666666666666665432 335667777777777788888888888888888888 88888888888
Q ss_pred HHhc-CCchHHHHHHHHHHH
Q 037236 786 YAGS-EKWDDVRMMRQRMKE 804 (953)
Q Consensus 786 y~~~-g~~~~a~~~~~~m~~ 804 (953)
|... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 8888 888888887766654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.7e-06 Score=79.51 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.|++... +.+..+|..+...+...|+++.|...++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999988754 3478899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999998887765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.9e-06 Score=72.54 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..++..+...|++++|.+.+++... +.++..|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677788999999999999999988753 4478889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-05 Score=77.14 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=109.5
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD---------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL----GHKP- 672 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P- 672 (953)
...++..+...|...|++++|...|++... ....++..+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 345666777788888888888888876652 13457888888999999999999999987763 1122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH
Q 037236 673 -DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS 747 (953)
Q Consensus 673 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ 747 (953)
....+..+...+...|++++|..++++..+...-.++ ...+..+..++.+.|++++|.+.+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR---------- 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH----------
Confidence 2345778888999999999999999988653322222 3346788899999999999999887742
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
..+...|+......+...+-...|
T Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 175 --DIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred --HHHHHcCCHHHHHHHHhcccchhh
Confidence 334455555544445544444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.7e-05 Score=77.39 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-HHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG--YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL-VENGLKY 696 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~-~~~a~~~ 696 (953)
++++...++.+. +++..+|+.-.-.+...| .+++++++++++.+ ..| |...|..-..++.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788887766 568889998888888888 48999999999999 567 88888888888888888 6999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhhc--------------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc----
Q 037236 697 FSQMQKLHAVKPK-LEHYACVVDMLGRA--------------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---- 755 (953)
Q Consensus 697 ~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---- 755 (953)
++.+++. .|+ ...|+....++.+. +.++++++++.+... +.|...|+-+-+.+...
T Consensus 168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999873 454 56666666666554 568899999987753 55788998777776554
Q ss_pred -------CChhHHHHHHHHHhccCCCCcchHHHHHHHHH---hcCCchHHHHHHHHHHH
Q 037236 756 -------GALKMGEKVAKTLLELEPDKAENYVLVSNIYA---GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 756 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~---~~g~~~~a~~~~~~m~~ 804 (953)
+-++.+...++++++++|++.=++..++.+.. ..|..+++.....++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 35789999999999999998554444433222 35666666666666655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.7e-06 Score=74.72 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY 713 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 713 (953)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+. .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---D------ 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C------
Confidence 455566666666666666666666666665 3454 344445555555555555555555554331 1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 714 ACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 714 ~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+.+...|..+...+...|+++.|...++++++++|+++..+..+..+...
T Consensus 96 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 -------------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp -------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred -------------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 22455666677777777788888888888888888888777776666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-05 Score=90.13 Aligned_cols=168 Identities=10% Similarity=0.037 Sum_probs=141.3
Q ss_pred CCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 622 GCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY----------GKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 622 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
..-++|.+.++.+. +.+...|+.--..+...|+ ++++++.++++++ ..| +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467888888876 4567789887777777777 8999999999999 567 778899988999999
Q ss_pred C--CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC-CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc------
Q 037236 688 G--LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG-KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY------ 755 (953)
Q Consensus 688 g--~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g-~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~------ 755 (953)
| ++++++++++.+.+ +.|. ...|+.-..++.+.| .++++++.++++.. ..|...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999987 4555 667777778888889 89999999998865 35788999998887663
Q ss_pred --------CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 756 --------GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 756 --------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
+.++++.+.++++++++|+|.+++..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=71.26 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46778889999999999999999988753 4467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999887765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=6.2e-06 Score=92.59 Aligned_cols=145 Identities=8% Similarity=-0.025 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
....|..+...|.+.|++++|+..|++.++ +.|+...+ .-++..+ .... ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHH
Confidence 445677777888888888888888888877 34432110 0000000 0000 135566777
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
.+|.+.|++++|++.+++... +.+...|..+..++...|+++.|...++++++++|++..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776643 346778888999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHH
Q 037236 796 RM-MRQRMKE 804 (953)
Q Consensus 796 ~~-~~~~m~~ 804 (953)
.+ .++.|-.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 76 4555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=72.76 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|.+.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67788899999999999999999988653 3467899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|.+.++...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00017 Score=75.80 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=155.0
Q ss_pred HhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 518 MHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNK-LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
.+.+..++|+++++.+... +...|+.--..+...| .+++++++++.+... .|.
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK--------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK--------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC---------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC---------------------
Confidence 3345567888888887643 4456777777777777 589999999998875 343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhc-C-CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH--------HHHH
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKC-G-CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK--------EAIE 660 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~A~~ 660 (953)
+..+|+.-...+.+. + +.+++.++++++. .+|..+|+--.-.+.+.|..+ ++++
T Consensus 122 -------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 122 -------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp -------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 233344333444444 4 6678888888777 456677776665555555555 8999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCH-----
Q 037236 661 LFEKMLALGHKP-DTFTFVGILMACNHAGL-------VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKL----- 726 (953)
Q Consensus 661 l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~----- 726 (953)
.++++++. .| |...|+.....+.+.+. +++++++++.++. +.|+ ...|+.+-.++.+.|+-
T Consensus 189 ~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 189 WCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccccc
Confidence 99999984 56 77788888888877776 6888888888876 4565 66677776677766653
Q ss_pred ---------------HHHHHHHHhCCC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCcchHHHH
Q 037236 727 ---------------DDAFKLIIEMPE--------EADAGIWSSLLRSCRTYGALKMGEKVAKTLL-ELEPDKAENYVLV 782 (953)
Q Consensus 727 ---------------~eA~~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l 782 (953)
.+..++...+.. .+.+..+.-|+..|...|+.+.|.++++.+. +.+|-....+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 444555555432 2567788999999999999999999999987 6788766665544
Q ss_pred HH
Q 037236 783 SN 784 (953)
Q Consensus 783 ~~ 784 (953)
+.
T Consensus 344 ~~ 345 (349)
T 3q7a_A 344 RR 345 (349)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-06 Score=76.70 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHA-----VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSL 748 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~l 748 (953)
...+......+...|++++|+..|+..++... -.|+...+ .-+ .+.+..+|..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~~~nl 69 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------VEL----DRKNIPLYANM 69 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------HHH----HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------HHH----HHHHHHHHHHH
Confidence 34566777777778888888887777755210 01111000 000 02234678888
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeC
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVG 828 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~ 828 (953)
..++...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~------------------------ 125 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR------------------------ 125 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh------------------------
Confidence 88889999999999999999999999999999999999999999999998877665
Q ss_pred CCCCccHH-HHHHHHHHHHHHHHh
Q 037236 829 DNMHPEWE-EIRGMWGRLEEQISK 851 (953)
Q Consensus 829 d~~hp~~~-~i~~~l~~l~~~~~~ 851 (953)
..|... .+...|..+...+++
T Consensus 126 --l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 126 --NHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp --HCGGGHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHHHHHHHH
Confidence 245544 566667666666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=70.88 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++...+. .|+ ...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 3445666666777777777777777777763 44 5566667777777777777777777777653 343 566677
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 758 (953)
+..++.+.|++++|.+.+++... +.+...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777766532 23556666666666666553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=78.09 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
.....++...|++++|...++++++++|+|.+.+
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6666666677777777777777777777666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.16 E-value=7.5e-06 Score=85.30 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++.+++ +.|+ ...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888999999999999999999998 467 678888999999999999999999998865 5676 778889
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCC------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EAD------AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+..+|.+.|++++|++.+++... .|+ ..+|..+. . ..+....+......|.++.....++.++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----I---AKKKRWNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-----H---HHHHHHHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-----H---HHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence 99999999999999999987642 121 22333221 1 1222333333356778888877887765
Q ss_pred cCCchHHHHHHHH
Q 037236 789 SEKWDDVRMMRQR 801 (953)
Q Consensus 789 ~g~~~~a~~~~~~ 801 (953)
.|++++|.+.++.
T Consensus 148 ~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 148 AAERERELEECQR 160 (281)
T ss_dssp HHHHHHHHTTTSG
T ss_pred HHHHHHHHHHHHh
Confidence 5778877765543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=71.12 Aligned_cols=61 Identities=5% Similarity=-0.015 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..|..+...+.+.|++++|++.|++.++ +.| +..+|..+..+|...|++++|+..|+..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3566677777777777777777777777 456 456677777777777777777777777655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-06 Score=82.53 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=93.4
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCH----------------HHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDV----------------TSW 642 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~----------------~~~ 642 (953)
....++.++.+++.++........ ....+..+...|.+.|++++|...|++.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344556666666665433221111 34556778889999999999999999875 2232 677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 643 NAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
..+..+|...|++++|+..+++.++. .| +...+..+..++...|++++|...|+...+ +.|+ ...+..+..++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHH
Confidence 77888888888888888888888873 55 566777788888888888888888887765 3454 55566666666
Q ss_pred hhcCCHHHHH
Q 037236 721 GRAGKLDDAF 730 (953)
Q Consensus 721 ~~~g~~~eA~ 730 (953)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6666665555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=72.30 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
...+..+...+.+.|++++|.+.+++... .|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 45566666777777777777777766543 454 5778888888999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHH
Q 037236 785 IYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 785 ~y~~~g~~~~a~~~~~~m~~ 804 (953)
+|...|++++|...++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999998887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=9.1e-06 Score=73.91 Aligned_cols=99 Identities=6% Similarity=-0.118 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHH
Q 037236 673 DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLL 749 (953)
Q Consensus 673 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll 749 (953)
+...+..+...+...|++++|...|+..++. .|+ ...|..+..+|.+.|++++|.+.+++... +.++..|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444555555555555555555555555442 232 44455555555555555555555544432 23455666666
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCC
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
..+...|+++.|...++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6777777777777777777777766
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=85.60 Aligned_cols=124 Identities=15% Similarity=0.003 Sum_probs=97.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-D---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
+...+..+...|.+.|++++|...|++.. .| + ...|..+..+|...|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 56678889999999999999999999876 23 3 47888888888888888888888888888
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH-HHHHh
Q 037236 669 GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAF-KLIIE 735 (953)
Q Consensus 669 g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~-~~~~~ 735 (953)
+.| +...+..+..++...|++++|+..|+++++ +.|+ ...+..+..++.+.|+.++|. +++++
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 667788888888888888888888888876 4454 566677777777777777773 34444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.8e-06 Score=77.79 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT 754 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~ 754 (953)
..+......+...|++++|+..|++.++..+-.|+.. +... .+.+...|..+..++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------a~~~-----~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------AFDH-----AGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------CCCH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------hhhh-----ccchHHHHHHHHHHHHH
Confidence 4466677777888888888888888876332222210 0000 00123478888888888
Q ss_pred cCChhHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLEL-------EPDKAENY----VLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|++++|...+++++++ +|+++.+| ..++.++...|++++|+..+++..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888 99999999 9999999999999999998877754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=72.04 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCC-h---hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EAD-A---GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYA 787 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 787 (953)
+...+.+.|++++|.+.+++... .|+ . ..|..+...+...|+++.|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666665554432 222 2 356666666777777777777777777777777 666777777777
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.2e-06 Score=78.94 Aligned_cols=124 Identities=19% Similarity=0.106 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-h
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG------HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-L 710 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 710 (953)
....|......+.+.|++++|+..|++.+..- -.|+...+ .. +.|. .
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~ 63 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNI 63 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHH
Confidence 35578888999999999999999999998830 01211100 00 1122 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-chHHHHHHHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA-ENYVLVSNIYA 787 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 787 (953)
..|..+..+|.+.|++++|+..+++... +.++..|..++.++...|+++.|...++++++++|+++ .....|..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4555666666666666666666655432 34566788888888888899999999999999999888 55555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=69.28 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC--ChhHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EA--DAGIWSSLLR 750 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~--~~~~~~~ll~ 750 (953)
.+..+...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|.+.+++... +. +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444444455555555555555555432 222 34444555555555555555555544322 22 4556666777
Q ss_pred HHHhc-CChhHHHHHHHHHhccCCCCc
Q 037236 751 SCRTY-GALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 751 ~~~~~-g~~~~a~~~~~~~~~l~p~~~ 776 (953)
.+... |+++.|...++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=71.54 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|+..|+..++ ..|+ ...|..+..++.+.|++++|+..+++... . .+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555556666666666665554 2343 45555555566666666666666555432 2 34556667777777
Q ss_pred hcCChhHHHHHHHHHhccCCCCc
Q 037236 754 TYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
..|+++.|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777887777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-05 Score=70.29 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-------AENYVLV 782 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l 782 (953)
.+..+...+...|++++|.+.+++... +.++.+|..+...+...|+++.|...+++++++.|++ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 445555566666666666666655432 3355667777777777888888888888888887766 7788999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999998887766
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=85.05 Aligned_cols=146 Identities=10% Similarity=0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
...|..+...+...|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566778888889999999999999887 4665442 223344444433221 135677777
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCchHH
Q 037236 719 MLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY-AGSEKWDDV 795 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~a 795 (953)
+|.+.|++++|++.+++... +.+...|..+..++...|+++.|...++++++++|+++.++..|+.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776643 345678888888888888888888888888888888888888888874 445666667
Q ss_pred HHHHHHHHH
Q 037236 796 RMMRQRMKE 804 (953)
Q Consensus 796 ~~~~~~m~~ 804 (953)
.+.++.|-.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777766644
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=85.55 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
...|..+...+...|++++|++.|++.++. .|+.. .....+++ ..+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~----------~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG----------AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH----------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH----------HHHHHHHHHHHHHHH
Confidence 345777777777888888888888777662 11110 00011111 012233 56777888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
.+|.+.|++++|++.+++... . .++..|..+..++...|+++.|...++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999888887654 3 45778899999999999999999999999999999999999999999999888877
Q ss_pred HH
Q 037236 796 RM 797 (953)
Q Consensus 796 ~~ 797 (953)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-05 Score=70.05 Aligned_cols=114 Identities=9% Similarity=-0.032 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.+.+...-.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------- 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----------
Confidence 45556666666666666666666666663 33 44555666666666666666666666654422110
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
.++ ..+|..+...+...|+++.|...+++++++.| ++.....+..++.
T Consensus 72 --------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 72 --------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 011 34555666666667777777777777777776 4555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.5e-05 Score=66.42 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=54.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhc
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTY 755 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~ 755 (953)
..+...|++++|...|+.+.+..+-.|. ...+..+..++.+.|++++|.+.+++... .|+ +.++..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444444555555554444432211111 12344444455555555555555444321 122 34556666667777
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
|+++.|...++++++..|+++........+-
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777777777778888887776555444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=71.10 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHK-PD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
.++..+...|...|++++|+..+++.++.... ++ ..++..+...+...|++++|..+++...+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 35666666777777777777777776652100 11 13455666666666777777766666544221111100
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCcchHHHHHHHHHh
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP------DKAENYVLVSNIYAG 788 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~ 788 (953)
....++..+...+...|+++.|...+++++++.+ ..+..+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 0022334444444455555555555555544321 124466778888888
Q ss_pred cCCchHHHHHHHHHH
Q 037236 789 SEKWDDVRMMRQRMK 803 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~ 803 (953)
.|++++|.+.+++..
T Consensus 142 ~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHL 156 (164)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 888888888766553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=85.80 Aligned_cols=113 Identities=9% Similarity=-0.073 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT 754 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~ 754 (953)
..+..+...+...|++++|...|++.++ +.|+.. .+...|+.+++...+. ..+|..+...+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4566778888999999999999999876 345422 2344556666655443 2478889999999
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.89 E-value=8e-06 Score=72.07 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHhCCCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 723 AGKLDDAFKLIIEMPEE----A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.|++++|++.+++.... | +..+|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554322 2 245666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHH
Q 037236 798 MRQRMKE 804 (953)
Q Consensus 798 ~~~~m~~ 804 (953)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.89 E-value=8.3e-06 Score=86.27 Aligned_cols=463 Identities=11% Similarity=0.036 Sum_probs=276.6
Q ss_pred CCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHh
Q 037236 96 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC 175 (953)
Q Consensus 96 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~ 175 (953)
..+.+|+.|..++.+.|.+.+|+..|=+ ..|+..|..+|.+..+.|.+++-+..+...++ . .-++..=+.++-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHHHH
Confidence 3456788899999999999988776644 45666788899999999999998888776655 3 33344456777788
Q ss_pred hcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHH
Q 037236 176 GGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLI 255 (953)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 255 (953)
++.+++.+-.++. -.|+..-...+.+-+...|.++.|.-+|..++. |..|...+++.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776554432 135555556666777777888888888877764 5555556677777777766555
Q ss_pred HhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC---CC
Q 037236 256 KMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN---NK 332 (953)
Q Consensus 256 ~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~ 332 (953)
+. -+..||-.+-.+|...+.+..|...--.++-. + .-...|+..|-+.|.+++-..+++... ..
T Consensus 195 KA--------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 195 KA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp TC--------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred hc--------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 44 46678888888999888887775543333321 1 122346778888888888888887533 34
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHH
Q 037236 333 NVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAF 412 (953)
Q Consensus 333 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 412 (953)
..-.++-|.-.|++- ++++..+-++.. .+..-...+|++|.+. ..|..+
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf--------~sriNipKviracE~a----------------------hLW~El 310 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELF--------WSRVNIPKVLRAAEQA----------------------HLWAEL 310 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTS--------SSSSCCTTTHHHHTTT----------------------TCHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHH--------HHhccHHHHHHHHHHH----------------------hhHHHH
Confidence 555677776666655 455555444422 1122223456666543 445556
Q ss_pred HHHHHhcCCcccHHHH-------------hccCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHH
Q 037236 413 VVAYAKCGSEISAENV-------------FHGMD--SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGS 477 (953)
Q Consensus 413 i~~y~~~g~~~~A~~~-------------f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 477 (953)
+-.|.+-.++|.|... |.++. -.|+..|-.-|.-|.+. .|. -.+-
T Consensus 311 vfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e------------------~P~--lL~D 370 (624)
T 3lvg_A 311 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF------------------KPL--LLND 370 (624)
T ss_dssp HHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS------------------CCT--TSHH
T ss_pred HHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh------------------ChH--HHHH
Confidence 6666666666655432 11111 11344444444444322 222 2333
Q ss_pred HHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHH-HHHHHHHhcCChhH
Q 037236 478 LILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWN-TMIAGYSQNKLPVE 556 (953)
Q Consensus 478 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~ 556 (953)
+|.++...=|.. ..++++.+.|++.-....+......|...-| ++-..|....+++.
T Consensus 371 LL~vL~prlDh~----------------------RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 371 LLMVLSPRLDHT----------------------RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHCTTCCST----------------------TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhccccCChH----------------------HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 443332221111 3445566667766666666666666555433 34455666666543
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK- 635 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 635 (953)
++.-.+.--.-|...+ |.++ .++. -...-..-...|.+.++++++..+..+=.
T Consensus 429 ----LR~SId~ydNFD~i~L---------------A~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkDkl 482 (624)
T 3lvg_A 429 ----LRTSIDAYDNFDNISL---------------AQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKDSL 482 (624)
T ss_dssp ----HHHTTSSCCCSCTTHH---------------HHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTTCC
T ss_pred ----HHHHHHHhccccHHHH---------------HHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhccc
Confidence 1222222112222222 2221 1110 11111223456788888888877765432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
-+| -|..-+..|+.+-|.++++-..+.| +...|.+.+-.|.+.=++|.++++
T Consensus 483 ykD------AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 483 YKD------AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTG------GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHH------HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 122 2444567888999999998888865 567888999999888888887775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=71.33 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
..+..+..+|.+.|++++|++.+++... +.++.++..+..++...|+++.|...++++++..|+++.....
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3344444445555555555554444322 2234556666666666777777777777777777777655433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-05 Score=70.26 Aligned_cols=128 Identities=11% Similarity=0.020 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD---- 673 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~---- 673 (953)
..++..+...|...|++++|...|++... ++ ..++..+...|...|++++|++.+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678889999999999999999998762 22 14788889999999999999999999876310 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
...+..+...+...|++++|..++++..+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 346777788888999999999998887653211111 22344444445555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.1e-05 Score=85.42 Aligned_cols=186 Identities=8% Similarity=-0.061 Sum_probs=117.7
Q ss_pred HHHhcCCHHHHHHHhhhcCC--C---C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-
Q 037236 617 MYAKCGCLEQSRRVFDRLKD--K---D---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDT- 674 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~- 674 (953)
.+.+.|++++|.+.|..+.+ + + ..++..++..|...|++++|.+.+.++... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556666667666665431 1 0 123566777788888888888888776652 111222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CC
Q 037236 675 ---FTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------EA 740 (953)
Q Consensus 675 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~~ 740 (953)
.....+...+...|.++++..+++...... +..+. ...+..|+..|...|++++|.+++++... ++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 122333334456677888888877765422 22222 45667788888888888888888765431 11
Q ss_pred -ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---C----cchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 741 -DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---K----AENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 741 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
...++..++..|...||++.|...+++++...|. + ...+..++.+|...|+|++|...+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1346777777888888888888888888775322 2 245667778888888888888755444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=67.38 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYVL 781 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 781 (953)
...+..+...+.+.|++++|++.+++... +.++.+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44566667777777777777777766542 3467788888888999999999999999999999998 888889
Q ss_pred HHHHHHhcCCchHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMM 798 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~ 798 (953)
++.++...|++++|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 99999998888877543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.002 Score=71.47 Aligned_cols=252 Identities=6% Similarity=-0.117 Sum_probs=150.0
Q ss_pred HHHhcCChhHHHHHHHhcccCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChh
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSL--------------------VSWNTMIAGYSQNKLPVEAIVLFRRMFSIG-VQPCEI 574 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~--------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 574 (953)
.+.+.|++++|.+.|..+.+.+. .++..+...|.+.|++++|.+.+.++...- ..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556677777776666542110 135667788888888888888888765521 112221
Q ss_pred ---hHHHHHH-HhccccchHHHHHHHHHHHH----cCCCC-CccHHHHHHHHHHhcCCHHHHHHHhhhcC--------CC
Q 037236 575 ---SIVSILS-ACSQLSALRLGKETHCYALK----AILTN-DAFVACSIIDMYAKCGCLEQSRRVFDRLK--------DK 637 (953)
Q Consensus 575 ---t~~~ll~-a~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~ 637 (953)
.....+. .+...|..+.+..++..... .+..+ -..++..|+..|...|++++|..++.+.. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1222232 34456778888877765543 22222 24567788999999999999999988764 11
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 037236 638 -DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG---HKP-D--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK- 709 (953)
Q Consensus 638 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~P-~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 709 (953)
.+..|..++..|...|++++|..++++..... ..| . ...+..+...+.+.|++++|...|....+.+....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 24578889999999999999999999876521 122 1 245666777788999999999988887654322111
Q ss_pred --h-hHH---HHHHHHHhhcCCHHHHHHHHHhCCC-----CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 710 --L-EHY---ACVVDMLGRAGKLDDAFKLIIEMPE-----EADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 710 --~-~~~---~~lv~~l~~~g~~~eA~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
. ... ..++-.....+..++-...+..... .|+...+..++.++. .+++.......+..
T Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~ 321 (434)
T 4b4t_Q 253 NSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQY 321 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 1 111 1112222233344444444443222 233445666666554 44555555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=79.73 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
...+..+...+...|++++|+..|++.++.. |... .....+++.++ .+.+..+|..+...+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~~-----~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAKL-----QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGGG-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4567788888899999999999998886521 1100 01111111110 0234678899999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.72 E-value=7.6e-05 Score=83.40 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL-----EPDKAEN---YVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+++.|...|...|++++|+..+++++++ .|++|.+ +..|...+.+.|++++|..+++.++++-.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666553 5655544 45788889999999999999999987543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00027 Score=79.21 Aligned_cols=124 Identities=13% Similarity=0.047 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKD---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
...+..+...|.+.|++++|...|++.. +.+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 4456677888889999999999998775 223 57888888889999999999999999888
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH-HHHhC
Q 037236 670 HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFK-LIIEM 736 (953)
Q Consensus 670 ~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~-~~~~~ 736 (953)
+.| +...+..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.|+.++|.+ ++++|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 667788888899999999999999988865 5665 6677778888888888877764 44444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=60.83 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455566666666777777666665432 3356678888888888999999999999999999999999999999887
Q ss_pred hcC
Q 037236 788 GSE 790 (953)
Q Consensus 788 ~~g 790 (953)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=61.72 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.++.+|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999999999999999999999999998776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00056 Score=56.79 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 739 EADAGIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
++|+.+|..+..++...++ .+.|...++++++++|+++.+...+++++...|++++|+..++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577888888888765554 7999999999999999999999999999999999999999999998743
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=63.83 Aligned_cols=77 Identities=8% Similarity=0.060 Sum_probs=63.2
Q ss_pred HHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 728 DAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 728 eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+|++.+++... +.++..|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555554432 346778888888899999999999999999999999999999999999999999999998777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.6e-05 Score=63.95 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-------
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK------- 709 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 709 (953)
+...|..+...+...|++++|++.|++.++ ..| +...+..+..++...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 455677788888888888888888888888 456 667788888888888888888888888865 4555
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
...+..+..++...|++++|.+.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 3345555566666666666655555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=5.2e-05 Score=69.22 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 723 AGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA----------LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
.+.+++|.+.+++... +.++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3344444444443321 2234444444444444433 569999999999999999999999999999875
Q ss_pred -----------CchHHHHHHHHHHH
Q 037236 791 -----------KWDDVRMMRQRMKE 804 (953)
Q Consensus 791 -----------~~~~a~~~~~~m~~ 804 (953)
++++|.+.+++.-+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH
Confidence 89999998887766
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.3e-05 Score=68.24 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=67.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV----------ENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
.+.+++++|++.+++..+ ..| +...|..+..++...|++ ++|+..|++.++ +.|+ ...|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 455667788888888877 466 666777777777777654 466666666655 4555 45555566
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+|...|++ .|+.. ...|++++|...++++++++|++...
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 555555433 22211 11268999999999999999988643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.001 Score=76.20 Aligned_cols=147 Identities=15% Similarity=0.138 Sum_probs=121.2
Q ss_pred hcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 651 IHG-YGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGL----------VENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 651 ~~g-~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
+.| ..++|++.+++++. +.|+ ...|+.-..++.+.|+ ++++++.++.+.+ ..|. ...|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 344 45788999999999 6884 4557777777777777 9999999999987 4455 66777777
Q ss_pred HHHhhcC--CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc---
Q 037236 718 DMLGRAG--KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG-ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS--- 789 (953)
Q Consensus 718 ~~l~~~g--~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~--- 789 (953)
.++.+.| ++++|+++++++.. +.+..+|+....+....| ..+.+...++++++.+|+|.+++...+.++...
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8888999 77999999999865 457889999999999999 899999999999999999999999999998874
Q ss_pred -----------CCchHHHHHHHHH
Q 037236 790 -----------EKWDDVRMMRQRM 802 (953)
Q Consensus 790 -----------g~~~~a~~~~~~m 802 (953)
++++++.+..+..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHH
Confidence 5567777755444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=77.51 Aligned_cols=457 Identities=12% Similarity=0.051 Sum_probs=242.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
.+..|..+..+....+ ...+|+..|=++ .++..|..++.++.+.|.++.-...+.-.. +. ..++.+-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH--hcccccHHHHHH
Confidence 4556777777777777 666666544332 344556677777777777776666554443 22 345556666777
Q ss_pred HHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhH
Q 037236 107 MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 186 (953)
+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+..
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------------------------- 172 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------- 172 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------------------------
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------------------------
Confidence 7777776554333222 34554445555555555555555555443322
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCC
Q 037236 187 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIP 266 (953)
Q Consensus 187 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 266 (953)
|..|...+.+.|++..|.+.-++. .++.||-.+-.+|+..+.+.-|.-+--.+. +.|
T Consensus 173 ----------------~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniI-----vha 229 (624)
T 3lvg_A 173 ----------------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHA 229 (624)
T ss_dssp ----------------CTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCS
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccH
Confidence 333344455556665554433222 356678888888888887766544433331 111
Q ss_pred ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCC-CCCchHHHHHHHhhHhcCChhHHHHHHh----cCCCC-------Cc
Q 037236 267 DVATVVTVLPVCAGEGNVDLGILVHGLAVKLGL-TRELMVNNALVDMYAKCGFLSEAQILFD----KNNNK-------NV 334 (953)
Q Consensus 267 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~----~~~~~-------d~ 334 (953)
..+..++..+-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. +++-.+-++ ++.-| +.
T Consensus 230 --deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 230 --DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp --SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223456667777888887777777665 32 456778888888888863 343333332 23322 45
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhcc------------CCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKE------------EEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGF 402 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 402 (953)
..|.-++--|..-..++.|... |.... ..-.+|...|-..|..|....-.- .-.++.- +...+
T Consensus 305 hLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l-L~DLL~v-L~prl 379 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL-LNDLLMV-LSPRL 379 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT-SHHHHHH-HCTTC
T ss_pred hhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH-HHHHHHh-ccccC
Confidence 5688888888887777766532 21100 001223333333333333221100 0000000 00011
Q ss_pred CCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh
Q 037236 403 DNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWN-ALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA 481 (953)
Q Consensus 403 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 481 (953)
++ +..++++.+.|.+.-....+......|...-| ++-..|....+++.- +.- +..
T Consensus 380 Dh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L----R~S---------------Id~ 435 (624)
T 3lvg_A 380 DH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL----RTS---------------IDA 435 (624)
T ss_dssp CS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH----HHT---------------TSS
T ss_pred Ch-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH----HHH---------------HHH
Confidence 11 12344555566666666666666555554433 555666666665431 222 222
Q ss_pred hccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHH
Q 037236 482 CTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLF 561 (953)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 561 (953)
|-+-.....|.++ .++ +-...-..-...|.+.++++++..+..+= ..|.-.|..-+..|+.+-|.+++
T Consensus 436 ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAietAa~S~~~elaeeLL 503 (624)
T 3lvg_A 436 YDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAMQYASESKDTELAEELL 503 (624)
T ss_dssp CCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHH
T ss_pred hccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHH
Confidence 2222222222221 111 11112222334577778888777654321 22333344456678888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchHHHHHH
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQLSALRLGKET 595 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 595 (953)
+-..+.| +...|...|-.|..+=+.+.+.++
T Consensus 504 ~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 504 QWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8888765 445688888888888777766554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0008 Score=60.98 Aligned_cols=110 Identities=15% Similarity=0.008 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~e 728 (953)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.+ .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777887777766 33333 556666667777777777777542 345566666666666 566666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhcc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLEL 771 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l 771 (953)
|.+++++.....++..+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666665444455555555555555 45556665555555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00074 Score=75.42 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL--------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSW 815 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l--------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 815 (953)
++++|..+|...|++++|+..+++++++ +|+-...+..|+.+|..+|++++|..++++..+--. +
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~------ 425 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL-V------ 425 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-H------
Confidence 4444444555555555555555555442 455566788999999999999999998776643110 1
Q ss_pred EEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHh
Q 037236 816 IELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISK 851 (953)
Q Consensus 816 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 851 (953)
+.| ..||...++..+|.+...++++
T Consensus 426 ----------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 426 ----------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ----------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 111 3899999999999988866654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00096 Score=73.35 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL--------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSW 815 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l--------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 815 (953)
++++|..+|...|++++|+..+++++++ +|+-...+..|+.+|..+|++++|..++++..+-- .+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~------ 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV------ 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH------
Confidence 3444444455555555555555554442 44455667788889999999999998766654310 01
Q ss_pred EEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHH
Q 037236 816 IELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQIS 850 (953)
Q Consensus 816 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 850 (953)
.- ...||...+++..|.+...+|+
T Consensus 404 ----------~l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 ----------TH-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ----------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------hc-CCCChHHHHHHHHHHHHHHHHh
Confidence 01 2389999999999998887765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=55.32 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+...|..+...|...|++++|+..|++.++ ..| +...|..+..++...|++++|...|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777778888888888888888777 355 456677777778888888888888777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00085 Score=58.45 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+...|..+...|...|++++|+..|++.++ ..| +...+..+..++...|++++|...|+...+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665 234 344555666666666666666666666544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.007 Score=63.46 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 636 DKDVTSWNAIIGGHG--IHG---YGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 636 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
+.+...|...+.+.. ..+ ...+|+.+|++.++ ..|+ ...+..+..++... ...+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~--------------~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR--------------HSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH--------------HHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH--------------hccC--CC
Confidence 446667777666543 333 35789999999999 6885 45555555544410 0000 11
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
.... + . .+.+|.+-...+.. +.++.++..+.-.+...|+++.|...++++++++| +..+|..++.++.-
T Consensus 253 ~~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 0000 0 0 01122221111111 23444555554444445555555555555555554 24455555555555
Q ss_pred cCCchHHHHHHH
Q 037236 789 SEKWDDVRMMRQ 800 (953)
Q Consensus 789 ~g~~~~a~~~~~ 800 (953)
.|++++|.+.+.
T Consensus 323 ~G~~~eA~e~~~ 334 (372)
T 3ly7_A 323 KGMNREAADAYL 334 (372)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0023 Score=52.47 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888888999999999999999999999999999999999999999999999998877765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0041 Score=56.18 Aligned_cols=112 Identities=6% Similarity=-0.014 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHH
Q 037236 688 GLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEK 763 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 763 (953)
+++++|.++|++..+ .+ .| ... |..+|...+..++|.+++++.....++..+..|...|.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467899999999865 33 23 333 888888889999999999988777888899999988887 789999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCCC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 807 (953)
.++++.+. .++.++..|+.+|.. .+++++|...+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 689999999999999 9999999999998887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0026 Score=69.80 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHHHhcC--CCC---C-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 686 HAGLVENGLKYFSQMQKLHA--VKP---K-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
+.|++++|..++++..+... +-| + ..+++.|..+|...|++++|+.++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a----------------------- 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI----------------------- 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----------------------
Confidence 34667777776666544321 112 2 344555556666666666666555542
Q ss_pred HHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHH
Q 037236 760 MGEKVAKTLLE-LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEI 838 (953)
Q Consensus 760 ~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i 838 (953)
..+.++.+- -+|+-...|..|+.+|..+|++++|..++++..+--. + .=...||...++
T Consensus 367 --L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~l 426 (433)
T 3qww_A 367 --IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-V-----------------AHGKDHPYISEI 426 (433)
T ss_dssp --HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTCHHHHHH
T ss_pred --HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-H-----------------HcCCCChHHHHH
Confidence 112222221 2445555677888888888888888887665543110 0 112379998888
Q ss_pred HHHHHH
Q 037236 839 RGMWGR 844 (953)
Q Consensus 839 ~~~l~~ 844 (953)
+..|++
T Consensus 427 ~~~l~~ 432 (433)
T 3qww_A 427 KQEIES 432 (433)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 876653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.022 Score=59.69 Aligned_cols=109 Identities=9% Similarity=-0.074 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHH--hcCC---HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHH
Q 037236 673 DTFTFVGILMACN--HAGL---VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWS 746 (953)
Q Consensus 673 ~~~t~~~ll~a~~--~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~ 746 (953)
|...|..++.+.. ..+. ..+|+.+|+++++ +.|+ ...|..+..+|. ...... ..+.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~----------~~~~~~-~~~~~~~~ 258 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDI----------VRHSQH-PLDEKQLA 258 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH----------HHHHHS-CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH----------HHhccC-CCchhhHH
Confidence 5566666665543 3333 4789999999877 6787 555655544444 011110 01111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.+ ..+.+. ...++++|.++.+|..++.++...|++++|....++....+
T Consensus 259 ~l----------~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 259 AL----------NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HH----------HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HH----------HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11 123332 23557789999999999999999999999999887776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0042 Score=52.06 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=46.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CC-Chh-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EA-DAG-IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
....+.+.|++++|++.+++... .| +.. .|..+...+...|+++.|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34556667777777777766542 23 456 777777778888888888888888888888888766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0055 Score=51.29 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=52.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAE-NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
....+...|+++.|...++++++.+|+++. .+..++.+|...|++++|...++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677889999999999999999999999 999999999999999999998887765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.021 Score=62.69 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCCC-hh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG---HKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH----A-VKPK-LE 711 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g---~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~ 711 (953)
.+..+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++.+ | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445666777777777777777531 2232 2456677777777777777777777665421 1 1122 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+++.|..+|...|++++|+.+++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=53.24 Aligned_cols=63 Identities=5% Similarity=-0.021 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYG---ALKMGEKVAKTLLELE-P-DKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+..+.-.+.+++...+ ++++|...++.+++.+ | ++...+..|+-.|++.|++++|.+..+.+-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444433 3334444444444444 3 234444444444555555555554444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.42 Score=41.16 Aligned_cols=142 Identities=9% Similarity=0.046 Sum_probs=94.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+...|..++..++..+.... .+..-++-++--...+-+=+-..+.++.+-+-+.+.| +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 44568888888888888763 2333344444444444555555666666644343333 344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
....+-.+. .+.....--+......|..++-++++..++.-+|-+|+..+-++++|.+.|...+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443333331 233344455666778899999999999987777778999999999999999999999999999999986
Q ss_pred c
Q 037236 809 K 809 (953)
Q Consensus 809 ~ 809 (953)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.13 Score=62.01 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
+....+|++++|.++...+. +...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556888888888877663 567888888889999999999988887643 2233444444666665544
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
+-+.... .| .++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4433322 11 1233344566677777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.025 Score=61.95 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=56.5
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCCC-hhHHHHHH
Q 037236 651 IHGYGKEAIELFEKMLAL---GHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH----A-VKPK-LEHYACVV 717 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~---g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~lv 717 (953)
..|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..+++++++.+ | -.|+ ...|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887762 12333 3678899999999999999999998876532 1 1222 33455555
Q ss_pred HHHhhcCCHHHHHHHHHh
Q 037236 718 DMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~ 735 (953)
.+|...|++++|+.++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=47.41 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
+.+.++..|..++...|+++.|...++++++++|+++.+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34567888888999999999999999999999999987755443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.087 Score=47.38 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAG---LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
...+.+-|.+..+.|. ++..+...+..++.+++ ++++|+.+|+...+.. .|+ .
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~-~-------------------- 69 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE-E-------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-H--------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-c--------------------
Confidence 4555666666666543 56666667777777776 5557777777765521 121 0
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 732 LIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 732 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+..+
T Consensus 70 ---------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 70 ---------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp ---------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 12234455667788889999999999999999988865543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.16 Score=61.22 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=85.0
Q ss_pred hcCCHHHHHH-HhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 620 KCGCLEQSRR-VFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 620 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
..|++++|.+ ++..++.++ ....++..+...|..++|+++.+. |+.. .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~-----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD-------QDQK-----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC-------HHHH-----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC-------cchh-----eehhhhcCCHHHHHHHHH
Confidence 4677777776 553333011 225566666777777777665421 1111 122345677777777643
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 699 QMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE----------EADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 699 ~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
.+ .+...|..|.+++.+.|+++.|++.|.++.. ..+...+..+...+...|+++.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 22 3456677777777777777777777776542 122223334444444555555555554432
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 769 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
+-+....++|.+.++|++|..+.+
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 222345567777888888877665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.048 Score=54.66 Aligned_cols=86 Identities=7% Similarity=0.079 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCC-CCC---hhHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCchHH
Q 037236 727 DDAFKLIIEMPE-EAD---AGIWSSLLRSCRT-----YGALKMGEKVAKTLLELEPDK-AENYVLVSNIYAGS-EKWDDV 795 (953)
Q Consensus 727 ~eA~~~~~~~~~-~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~a 795 (953)
.+|...+++... .|+ ...|..|+..|.. -|+.+.|++.++++++++|+. ..+++.++..|... |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444332 343 4566666666666 489999999999999999974 99999999998884 899999
Q ss_pred HHHHHHHHHCCCccCCc
Q 037236 796 RMMRQRMKERGLQKEAG 812 (953)
Q Consensus 796 ~~~~~~m~~~~~~~~~~ 812 (953)
.+..++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99888877755443344
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.19 Score=41.29 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGY---GKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
+|+..|..+..++...++ .++|..+|++.++ ..| +......+...+...|++++|+.+|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777776654444 5888888888888 577 456677777788888888888888888865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.25 Score=49.56 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred cCCHHHHHHHhhhcCCCCH--HHHHHHHHH-HHhc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 037236 621 CGCLEQSRRVFDRLKDKDV--TSWNAIIGG-HGIH--G------YGKEAIELFEKMLALGHKPD---TFTFVGILMACNH 686 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~P~---~~t~~~ll~a~~~ 686 (953)
.|+..+-.+.+.++.+.|+ ..|..++.+ +... | ...+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4555555566666664443 467777653 3332 3 25778888888888 6886 5678888888888
Q ss_pred -----cCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhc-CCHHHHHHHHHhCC
Q 037236 687 -----AGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRA-GKLDDAFKLIIEMP 737 (953)
Q Consensus 687 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~-g~~~eA~~~~~~~~ 737 (953)
.|+.++|.++|++.++ +.|+ +.++....+.|++. |+.++|.+.+++..
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4999999999999987 6673 77777788888774 88888887777653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=9.5 Score=43.40 Aligned_cols=250 Identities=10% Similarity=-0.003 Sum_probs=119.8
Q ss_pred hhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445556667777777765555 32233333345556666777777777777666555 223344455555555443332
Q ss_pred HH--HHHHHHHHHcC-----------CCCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHH---HHHHHHHHHhcC
Q 037236 591 LG--KETHCYALKAI-----------LTNDA-FVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTS---WNAIIGGHGIHG 653 (953)
Q Consensus 591 ~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g 653 (953)
.. .+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-+++ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 21 11111111111 11111 1112222222221111 1111111 111111 1111222333 3
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 037236 654 YGKEAIELFEKMLALG-HKPDTF--TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g-~~P~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~ 730 (953)
+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876543 222211 122222233344435566666666533 2233222333444455779999999
Q ss_pred HHHHhCCCCC-ChhHHH-HHHHHHHhcCChhHHHHHHHHHhc
Q 037236 731 KLIIEMPEEA-DAGIWS-SLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 731 ~~~~~~~~~~-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..|+.|+..+ +..-|. =+..+....|+.+.|...++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999987643 222222 233355678999999999988875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.15 E-value=1 Score=41.50 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=84.3
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455689999999988876 4677899999999999999999999987543 3344555666777766555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+-+.... .| -++.-...+.-.|+++++.+++.+...-|.+ .-..+.+|--+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 4443322 11 2344445566678888888888775432211 11234466666666665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.24 Score=42.73 Aligned_cols=97 Identities=14% Similarity=-0.015 Sum_probs=61.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--ChhHHHHHHHHHHh
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD---AFKLIIEMPEE--A--DAGIWSSLLRSCRT 754 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e---A~~~~~~~~~~--~--~~~~~~~ll~~~~~ 754 (953)
..-.....+..+.+.|...... +. |+..+-..+..+|.+.....+ ++.+++..... | .-...-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444455566666655432 22 666666677778888776665 77777776543 2 11234455556788
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.|+++.|.+.++.+++.+|+|..+..
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888887765443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.12 E-value=1.3 Score=38.89 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhCCC-CC-C-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLD---DAFKLIIEMPE-EA-D-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~---eA~~~~~~~~~-~~-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.|+..+--.+..+|.+....+ +++.+++.... .| + -...--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555555565555433 34444444321 22 1 112233334455666666666666666666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.28 Score=56.99 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
..-|...|+++.|..+++++...-|++-.++..|+.+|...|+|+.|+-..+.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444778899999999999999999999999999999999999999999988776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.69 Score=42.64 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=39.2
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+.-...|+++.|.++.+.+ .+...|..|...+..+||++.|++++.++- -+..|.-+|...|+-+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHHH
Confidence 3445566666666666554 345566666666666666666666666633 22334445555555544443
Q ss_pred HH
Q 037236 798 MR 799 (953)
Q Consensus 798 ~~ 799 (953)
+-
T Consensus 82 la 83 (177)
T 3mkq_B 82 MQ 83 (177)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.57 E-value=1.2 Score=38.32 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCC
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN---GLKYFSQMQKLHAVKP--KLEHYACVVDMLGRAGK 725 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~lv~~l~~~g~ 725 (953)
.......+.+-|.+....|. |+..|-..+..++.++....+ |+.+++...+. -.| ..+..-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445566677777666553 788888888999999888776 89998888552 224 24455567778999999
Q ss_pred HHHHHHHHHhCCC-CCC
Q 037236 726 LDDAFKLIIEMPE-EAD 741 (953)
Q Consensus 726 ~~eA~~~~~~~~~-~~~ 741 (953)
+++|.+.++.+.. +|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 9999999988764 554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=37.25 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLEL-------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
-.++..+...|+++.|..-++.+++. .+..+..+..|+.+|.+.|++++|....+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555555555555553 234567889999999999999999998887765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.64 E-value=2.4 Score=38.37 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
+.---+..+|.+.|+.++|+..++.+|.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 44344667788888888888888888753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.43 E-value=1.7 Score=38.54 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
++.++|.++|+.+.. +.=+.+|-....--.++|++..|.+++.+++.+.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 455555555554421 112667777777777889999999999999988886544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.36 E-value=1.7 Score=37.63 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhCCC-CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLD---DAFKLIIEMPE-EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~---eA~~~~~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.|+..+--.+..++.+....+ +++.+++.... .| .-..+--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555566666665443 45555554432 23 1234455555677777777777777777777776664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.83 E-value=28 Score=35.75 Aligned_cols=134 Identities=12% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHH----HHhhhccCCCCCChhhHHHHHHhh
Q 037236 203 SNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLL----IKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
|.++..-|.+.+++++|.+++-+- ...+.+.|....|-++- +.. .+.++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy--~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTF--RQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH--HHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHH
Confidence 456667788899999999876331 33456677776665554 444 4667888888887777777
Q ss_pred hcCCCch-----HHHHHHHHHHHhC--CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCC
Q 037236 279 AGEGNVD-----LGILVHGLAVKLG--LTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGD 349 (953)
Q Consensus 279 ~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 349 (953)
.....-+ .......+-.+.| ..-|+.....+...|.+.+++.+|+.-|=....+....+..|+..+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 6655322 1223334444555 345778888899999999999999988853222223556555555544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.24 E-value=68 Score=38.08 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHh
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT-F---VGILMACNH 686 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t-~---~~ll~a~~~ 686 (953)
|.-.|.-.|+-+....++..+. .. ++.-.-++.-|+...|+.+.+..+.+.+... +|... | .++..+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 3334445566665555555433 11 2222223333444667777777777766652 23222 2 234445667
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChh
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAG 743 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~ 743 (953)
.|+.....+++..+..+ ...++.....+.-++.-.|+.+.+.++++.+....|+.
T Consensus 573 TGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~ 627 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH 627 (963)
T ss_dssp SCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH
T ss_pred CCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH
Confidence 77766666677766542 11222222222223333455544555555443333433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.95 E-value=47 Score=35.99 Aligned_cols=150 Identities=13% Similarity=-0.018 Sum_probs=81.2
Q ss_pred HHHhcCCCHHHHHHHHHHhhc-------CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHH-
Q 037236 37 TLCEESKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMY- 108 (953)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y- 108 (953)
.+++ | ++++|++.+..+.+ ..........+++.|...++++...+....+.++.|..+.. -..+++.+
T Consensus 26 ~l~~-~-~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~ 101 (445)
T 4b4t_P 26 SLAQ-N-DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM 101 (445)
T ss_dssp --CH-H-HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH
T ss_pred HHHc-C-CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 3433 5 78888887765543 23346677888999999999988877666655344433222 22333322
Q ss_pred ---HhcCChh--hHHHHhhcCC---CCCc-------hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-----ccH
Q 037236 109 ---SLCGFPL--DSRRVFDSLK---TRNL-------FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDN-----FTF 168 (953)
Q Consensus 109 ---~~~g~~~--~A~~~f~~~~---~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~ 168 (953)
......+ .-..+.+.+. +.-. .....|...|...|++.+|..++..+.. .-...+. ..+
T Consensus 102 ~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~-Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 102 EYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV-ETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCSSSCHHHHHHHH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHhcccHHHHHHHH
Confidence 2223222 2223333322 1111 1234566677788888888888887664 1111111 134
Q ss_pred HHHHHHhhcCCChhhHhHHHHHH
Q 037236 169 PCVIKACGGIADVSFGSGVHGMA 191 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~ 191 (953)
...++.|...+++..|..+...+
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555666666666666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=84.72 E-value=19 Score=31.21 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
+||++......+-.+.. +....+.-+..+...|+-++-.+++..+... ..|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 46666666666655543 3344555667778888888888888885442 467888888888899999998888888888
Q ss_pred HHHhcCC
Q 037236 700 MQKLHAV 706 (953)
Q Consensus 700 m~~~~~~ 706 (953)
+.+ .|+
T Consensus 151 AC~-kG~ 156 (172)
T 1wy6_A 151 ACK-KGE 156 (172)
T ss_dssp HHH-TTC
T ss_pred HHH-hhh
Confidence 865 444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.63 E-value=6.8 Score=38.64 Aligned_cols=124 Identities=16% Similarity=0.078 Sum_probs=77.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~ 725 (953)
....+.|+.++|++....-++. .| |...-..++..++-.|+++.|.+-++...+ +.|+...-..+..-+.++..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 3456788999999998888884 67 777777888899999999999998888865 56663322222122222211
Q ss_pred HHHHHHHHHh--CCC-CCChhHH-HHHHHHH--HhcCChhHHHHHHHHHhccCCCCcc
Q 037236 726 LDDAFKLIIE--MPE-EADAGIW-SSLLRSC--RTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 726 ~~eA~~~~~~--~~~-~~~~~~~-~~ll~~~--~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
..+ ++|.. .|. --.+.-| ..|+.+. ...|+.+.|...-+++++.-|..++
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 12221 111 0112224 3444443 3468888888888888888876665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.25 E-value=8 Score=34.29 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHH
Q 037236 635 KDKDVTSWNAIIGGHGIHGYG------KEAIELFEKMLALGHKPDT----FTFVGILM---ACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~P~~----~t~~~ll~---a~~~~g~~~~a~~~~~~m~ 701 (953)
.+.|..+|-..+...-+.|+. ++..++|++.... +.|+. ..|..+.- .+...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366888999999988888998 8889999999885 66642 11221111 1234489999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 702 KLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 702 ~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
+. +-+- ...|-.....-.|.|+++.|.+++.+..
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 64 2222 6666666777789999999999997653
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=83.61 E-value=59 Score=37.03 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=46.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh---
Q 037236 544 MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK--- 620 (953)
Q Consensus 544 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--- 620 (953)
....+.-.|+++.|++++-+. ...+.+.+...|.-+.-++. +..++..-. + . ...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~-~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-K-RDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-c-ccccHHHHHHHHHHHhh
Confidence 345566689999999887754 35677777777766554442 111111100 1 1 12336677888875
Q ss_pred cCCHHHHHHHhhhcCCC
Q 037236 621 CGCLEQSRRVFDRLKDK 637 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~ 637 (953)
..+..+|.+.|--+..+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57888888887766533
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=80.64 E-value=84 Score=35.78 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHh---
Q 037236 443 LICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMH--- 519 (953)
Q Consensus 443 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--- 519 (953)
....+.-.|+++.|++++-.. ...|.+.+...+..+.-.+- ...+ ..........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~l----ls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSST----RLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcc----cccCCCcccccHHHHHHHHHHHhh
Confidence 345566689999999988755 35566666666665544432 1111 111000112235567777765
Q ss_pred cCChhHHHHHHHhccc
Q 037236 520 CEKSSSARVLFDEMED 535 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~ 535 (953)
..+..+|...|--+.-
T Consensus 369 ~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTCHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHhc
Confidence 5677777777666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=8.7 Score=41.05 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEH 712 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 712 (953)
...++..+...|++++|+..++++.. ..| +...+..++.++...|+..+|++.|+...+ ..|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34567778889999999999999887 577 788899999999999999999999888644 4688998654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.07 E-value=11 Score=40.15 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC--------CCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHH--
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK--------DKDVTSWNAIIGGHGI-HGYGKEAIELFEKMLALGHKPDTFTFV-- 678 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~P~~~t~~-- 678 (953)
....|...|.+.|+.++..+++.... .+....-..++..+.. .|..+.-.++..+.++- .+-+..+|.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-AKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChh-HHHHHH
Q 037236 679 ----GILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAG-IWSSLL 749 (953)
Q Consensus 679 ----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~-~~~~ll 749 (953)
-++..|...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+...-+++. .--.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCchHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA-GSEKWDDVRMMR 799 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a~~~~ 799 (953)
+.....+ |-++. ..++|.+|...+
T Consensus 180 a~i~~~~--------------------------Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 180 GALDLQS--------------------------GILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHH--------------------------HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHh--------------------------hHHHHHhccCHHHHHHHH
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 953 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 44/362 (12%), Positives = 101/362 (27%), Gaps = 15/362 (4%)
Query: 433 DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLF-SIGSLILACTHLKSLHRG 491
+ L + Q ++ + P L + +L L
Sbjct: 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 492 KEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQN 551
E + +R + +L + + + ++ + G
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 552 KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVA 611
L + +I QP S L H + N
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 612 CSIIDMYAKCGCLEQSRRVFDR---LKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668
++ ++ + +++ + R L + + G AI+ + + + L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 669 GHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728
+ + A G V ++ L + + ++ G +++
Sbjct: 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIEE 323
Query: 729 A---FKLIIEM-PEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784
A ++ +E+ PE A A S+L + G L+ K + + P A+ Y + N
Sbjct: 324 AVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Query: 785 IY 786
Sbjct: 382 TL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 8/194 (4%)
Query: 606 NDAFVACSIIDMYAKCGCLEQSRRVFDR---LKDKDVTSWNAIIGGHGIHGYGKEAIELF 662
N A ++ ++ G + + F++ L + ++ + A+ +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 663 EKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR 722
+ L+L + GL++ + + + +L P + Y + + L
Sbjct: 227 LRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP--DAYCNLANALKE 283
Query: 723 AGKLDDAFKLIIE--MPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780
G + +A A ++L R G ++ ++ + LE+ P+ A +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 781 LVSNIYAGSEKWDD 794
++++ K +
Sbjct: 344 NLASVLQQQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.77 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.36 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.33 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.08 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.91 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.67 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.29 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.17 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.47 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.84 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.6e-19 Score=197.59 Aligned_cols=344 Identities=12% Similarity=0.090 Sum_probs=234.2
Q ss_pred hhHHHHHHHHHHhcCCcccHHHHhccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhh
Q 037236 406 ELVANAFVVAYAKCGSEISAENVFHGMD---SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILAC 482 (953)
Q Consensus 406 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 482 (953)
..++..+..+|.+.|++++|...|++.. ..+..+|..+...|.+.|++++|+..+......... +...........
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 111 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccc
Confidence 3344445555555555555555555432 224566777777778888888888888777764322 222222222222
Q ss_pred ccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHH
Q 037236 483 THLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIV 559 (953)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 559 (953)
...................... ...............+....+...+..... .+...+..+...+...|++++|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 190 (388)
T d1w3ba_ 112 VAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHH
Confidence 2223333333332222222211 222222333333444444444444443321 123344444555555555555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 037236 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---D 636 (953)
Q Consensus 560 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 636 (953)
.+++..+. .|+ +...+..+...|...|++++|...|++.. .
T Consensus 191 ~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 191 HFEKAVTL--DPN----------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--Ccc----------------------------------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh
Confidence 55554432 222 45667778888999999999999988765 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC 715 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 715 (953)
.+...|..+...+...|++++|+..|++.++ ..| +..++..+..++...|++++|.+.++...... ..+...+..
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 310 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNN 310 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhH
Confidence 5777888899999999999999999999998 577 56789999999999999999999999987632 334678888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+..++.+.|++++|++.+++... .| ++.+|..+...+...|++++|...++++++++|+++.+|..|+++|.+.|+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999998754 44 577899999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.2e-19 Score=192.33 Aligned_cols=352 Identities=12% Similarity=0.069 Sum_probs=264.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChh
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSS 524 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 524 (953)
..+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...+..+++..+. +..++..+..+|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccc
Confidence 34455566666666666665532 113344455555566666666666666666655432 4556777788888888888
Q ss_pred HHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 525 SARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK 601 (953)
Q Consensus 525 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 601 (953)
+|...+....+. +...+..........+....+............ ................+....+.........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhc
Confidence 888888877643 233444445555566666666666666555432 2333333344444555566666666655555
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 602 AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 602 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
... .+...+..+...+...|+.++|...+++.. +.+...|..+...+...|++++|+..|++....+ ..+...+.
T Consensus 164 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 432 256677888999999999999999999765 4567889999999999999999999999998853 23667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY 755 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~ 755 (953)
.+..++...|++++|...|+++.+ +.|+ ...+..+..+|.+.|++++|++.++.... +.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 899999999999999999999876 5676 77899999999999999999999987643 45778899999999999
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|+++.|...++++++++|+++.++..++.+|...|++++|...+++.-+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.2e-13 Score=142.04 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=165.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 037236 544 MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC 623 (953)
Q Consensus 544 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 623 (953)
....+.+.|++++|+..|++..+. .|+ +...+..++..|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~----------------------------------~~~a~~~lg~~~~~~~~ 68 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPK----------------------------------HMEAWQYLGTTQAENEQ 68 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTT----------------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHHHHcCC
Confidence 444566777777777777777664 343 34455556666666777
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF----------------TFVGILMAC 684 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~----------------t~~~ll~a~ 684 (953)
+++|...|.+.. +.+...|..++..|...|++++|++.++++.. ..|+.. .....+..+
T Consensus 69 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
T d1fcha_ 69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence 777777766554 34566777777777777777777777777766 333211 111122334
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
...+.++++...|..+.+..+-.++...+..+...+.+.|++++|++.+++... +.++.+|..++..+...|+++.|.
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 455677889999988877554445577888899999999999999999988643 346789999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 763 KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1e-12 Score=139.02 Aligned_cols=262 Identities=15% Similarity=0.113 Sum_probs=173.8
Q ss_pred HHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccch
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPC-EISIVSILSACSQLSAL 589 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~ 589 (953)
...|.+.|++++|...|+++.+. +..+|..+...|...|++++|+..|.+..+. .|+ ...+..+...+...|..
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccccc
Confidence 44577888888888888887642 4557888888888899999999988888764 343 22333333344444444
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
++|.+.+..+........ .......... ...+.......+..+...+...+|.+.|.+.++..
T Consensus 104 ~~A~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYA-HLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccchH-HHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 444444444433221100 0000000000 00011111112233445567788999999888742
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHH
Q 037236 670 H-KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIW 745 (953)
Q Consensus 670 ~-~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~ 745 (953)
. .++...+..+...+...|++++|+..|+...+ ..|+ ...|..+...|.+.|++++|.+.+++... .| ++.+|
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 22567788888999999999999999999876 3455 77888999999999999999999988653 34 57789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH-----------HHHHHHHHhcCCchHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY-----------VLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~a~~ 797 (953)
..++.+|...|++++|...++++++++|++..++ ..+..++...|+++.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999887654 346667777787776544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.8e-09 Score=112.38 Aligned_cols=217 Identities=13% Similarity=0.165 Sum_probs=169.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
.++-+...+.+.+.+++|+++++++++. .|+ +...|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 4566667788889999999999999885 565 4556667777777
Q ss_pred hcC-CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 620 KCG-CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 620 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
+.| ++++|...++... +.+..+|+.+...+...|++++|++.|+++++ ..| +...|..+...+.+.|++++|+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 766 4899999988775 56788999999999999999999999999999 577 6888999999999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC------HHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK------LDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~------~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
..|+.+++ +.|+ ...|+.+..++.+.|+ +++|++.+.+... +.+...|..+...+.. ...+.+...+
T Consensus 167 ~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHH
Confidence 99999987 5665 6678777777777665 6788888876643 3468889888777654 4468889999
Q ss_pred HHHhccCCCCcch--HHHHHHHHHhc--CCchHHHHH
Q 037236 766 KTLLELEPDKAEN--YVLVSNIYAGS--EKWDDVRMM 798 (953)
Q Consensus 766 ~~~~~l~p~~~~~--~~~l~~~y~~~--g~~~~a~~~ 798 (953)
+.+++++|+.... +..++.+|... +..+.+...
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998876554 45667777543 444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-09 Score=114.21 Aligned_cols=190 Identities=7% Similarity=0.073 Sum_probs=161.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG-YGKEAIELFEKMLALGHKP-DTFTFVGILMA 683 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a 683 (953)
..++-+...+.+.+..++|.++++++. +.+...|+.....+...| ++++|+..+++.++ +.| +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 455667778889999999999999887 557789999999988877 58999999999999 578 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC---
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA--- 757 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~--- 757 (953)
+...|++++|+..++.+++ +.|+ ...|..+..++.+.|++++|++.++++.. +.+...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 9999999999999999987 5676 78899999999999999999999998864 3467889888877766554
Q ss_pred ---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 758 ---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 758 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++.|...++++++++|++..++..++.++...| .+++....+...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 578999999999999999999999999987765 4677776666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.5e-08 Score=105.58 Aligned_cols=259 Identities=12% Similarity=0.038 Sum_probs=176.9
Q ss_pred HHHHHhcCChhHHHHHHHhccc--CC------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhc
Q 037236 514 LSLYMHCEKSSSARVLFDEMED--KS------LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACS 584 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~ 584 (953)
...+...|++++|.++|++..+ |+ ...++.+...|...|++++|+..|++..+.... ++...
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------- 89 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------- 89 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH---------
Confidence 3455667777777777766432 11 134556666777778888887777776542111 11100
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-------CC----CHHHHHHHHHHHHhcC
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-------DK----DVTSWNAIIGGHGIHG 653 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g 653 (953)
....+..+...|...|++..|...+.... .+ ....+..+...+...|
T Consensus 90 ----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 90 ----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 11233445566777778777777766543 11 1235566777888999
Q ss_pred ChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhhcC
Q 037236 654 YGKEAIELFEKMLALGHK----PDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-----LEHYACVVDMLGRAG 724 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~----P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~~~g 724 (953)
+++.+...+++....... ....++......+...|...++...+............ ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 999999999988774221 13455666677788899999999888877654433222 234556677888999
Q ss_pred CHHHHHHHHHhCCC-CC-----ChhHHHHHHHHHHhcCChhHHHHHHHHHhc------cCCCCcchHHHHHHHHHhcCCc
Q 037236 725 KLDDAFKLIIEMPE-EA-----DAGIWSSLLRSCRTYGALKMGEKVAKTLLE------LEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 725 ~~~eA~~~~~~~~~-~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
++++|.+.+++... .| ....+..+..++...|+++.|...++++++ ..|+...++..++.+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 99999999988754 11 134566778889999999999999999874 4566778899999999999999
Q ss_pred hHHHHHHHHHH
Q 037236 793 DDVRMMRQRMK 803 (953)
Q Consensus 793 ~~a~~~~~~m~ 803 (953)
++|.+.++...
T Consensus 308 ~~A~~~l~~Al 318 (366)
T d1hz4a_ 308 SDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999776553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=4.6e-09 Score=106.16 Aligned_cols=190 Identities=11% Similarity=0.014 Sum_probs=130.4
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMAC 684 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~ 684 (953)
.++..++..|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|++.|+++++ +.| +..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 456667888899999999999998776 56788899999999999999999999999998 567 566788888889
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHh----cCCh
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRT----YGAL 758 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~----~g~~ 758 (953)
...|++++|...|+..++. .|+ ......+...+.+.+..+.+..+...... .++...|.. +..+.. .+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999988763 444 33333444455555555544444333221 122222221 111111 1223
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+...........|+...+|..|+.+|...|++++|.+.+++.-.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444455677777888899999999999999998877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=7.4e-08 Score=96.94 Aligned_cols=199 Identities=12% Similarity=-0.037 Sum_probs=140.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..|..+...|.+.|++++|++.|++.++. .|+ ++.+++.+...|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~----------------------------------~~~a~~~lg~~~ 81 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAI--RPD----------------------------------MPEVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCC----------------------------------CHHHHhhhchHH
Confidence 35666778888899999999999888764 554 667788889999
Q ss_pred HhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 619 AKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|++.++. .| +......+..++...+..+...
T Consensus 82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999876 446778999999999999999999999999984 56 4555555555556666666665
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhcCC----HHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 695 KYFSQMQKLHAVKPKLEHYACVVDMLGRAGK----LDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~----~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
.+...... ..+....+.. +..+..... .+.+...+..... .| ...+|..++..+...|+++.|...++++
T Consensus 160 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 160 VLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555533 2333333332 233322222 2222222211110 12 2357778888999999999999999999
Q ss_pred hccCCCCcchH
Q 037236 769 LELEPDKAENY 779 (953)
Q Consensus 769 ~~l~p~~~~~~ 779 (953)
++.+|++...|
T Consensus 236 l~~~p~~~~~~ 246 (259)
T d1xnfa_ 236 VANNVHNFVEH 246 (259)
T ss_dssp HTTCCTTCHHH
T ss_pred HHcCCCCHHHH
Confidence 99999886554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=2.4e-09 Score=113.04 Aligned_cols=260 Identities=11% Similarity=-0.057 Sum_probs=178.3
Q ss_pred hcCChhHHHHHHHhccc--CCc-ccHHHHHHH----------HHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHhc
Q 037236 519 HCEKSSSARVLFDEMED--KSL-VSWNTMIAG----------YSQNKLPVEAIVLFRRMFSIGVQPCE-ISIVSILSACS 584 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 584 (953)
+.+..++|.++++.+.+ |+. ..|+..-.. +...|++++|+.+++...+. .|+. ..+.....++.
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHH
Confidence 33344677777776653 322 234332222 23334467788888877765 3433 33444444444
Q ss_pred ccc--chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 585 QLS--ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 585 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
..+ +.+++...+..+...........+..+...+...|..++|...++.+. +.+...|+.+...+...|++++|.
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 443 467777777777765443222223445577788899999999999887 457789999999999999998887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 037236 660 ELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE 738 (953)
Q Consensus 660 ~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~ 738 (953)
..+++... +.|+.. .+...+...+..+++...+..... ..|+ ...+..++..+...|+.++|.+.+.+...
T Consensus 199 ~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 199 PQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL---GRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH---SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH---hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77766555 234322 233345566777788888887765 3343 55666778888889999999998887653
Q ss_pred -CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 739 -EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 739 -~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
.| +..+|..++..+...|+.++|...++++++++|++...|..|+..+.-
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 34 467888899999999999999999999999999999999888887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.6e-07 Score=97.07 Aligned_cols=187 Identities=15% Similarity=0.070 Sum_probs=147.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKD-VTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
+..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++. ..+ ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3456777888888776555566788888999999999999999999875 223 347999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--
Q 037236 663 EKMLALGHKP-DTFTFVGILMA-CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-- 738 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-- 738 (953)
+++++. .| +...|...+.. +...|+.+.|..+|+.+.+..+. +...|...++.+.+.|++++|..+|++...
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~--~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 999885 44 44444444433 34568999999999999875332 267888999999999999999999987532
Q ss_pred --CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 739 --EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 739 --~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.| ...+|...+.--..+|+.+.+..+.+++.++.|++..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 22 2458999999889999999999999999998887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=4e-07 Score=96.02 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcC-------CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHH
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLK-------DK---DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTFVG 679 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~-------~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~~~ 679 (953)
.+...+...|...++...+.... .. ....+..+...+...|+.++|...+++.......+ ...++..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 33444555566555555444322 11 12245555566677777777777777665532111 2334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKL---HAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
+..++...|++++|...++.+... .+..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777777777777777766432 233343 445666667777777777777776653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=3.3e-09 Score=111.87 Aligned_cols=250 Identities=6% Similarity=-0.087 Sum_probs=181.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH----HHHHHHh-------ccccchHHHHHHHHHHHHcCCCCCccHHH
Q 037236 544 MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI----VSILSAC-------SQLSALRLGKETHCYALKAILTNDAFVAC 612 (953)
Q Consensus 544 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 612 (953)
++......+..++|++++++..+. .|+..+. ..++... ...+.++++...++.+.+.... +...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 333333444568999999999875 6776543 1222222 2345567788888887776533 556666
Q ss_pred HHHHHHHhcC--CHHHHHHHhhhcC---CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 037236 613 SIIDMYAKCG--CLEQSRRVFDRLK---DKDVTSWNA-IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACN 685 (953)
Q Consensus 613 ~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~ 685 (953)
.+...+...+ +.++|...+.++. +++...|.. ....+...|.+++|+..++++++ ..| +...|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 6776766665 4788988888875 456666654 44667778999999999998888 567 6777888888899
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHH
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP--EEADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
..|++++|...++...+ +.|. ...+...+...+..++|...+.+.. .+++...+..++..+...|+.+.|..
T Consensus 190 ~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 99988887766655443 1222 1223344566677777777766542 24456677777888888999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.+.++++.+|++..++..++++|...|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=7.3e-07 Score=92.03 Aligned_cols=179 Identities=10% Similarity=0.057 Sum_probs=144.9
Q ss_pred cCCHHHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHHHH
Q 037236 621 CGCLEQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-D-TFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~-~~t~~~ll~a~~~~g~~~~a~ 694 (953)
.+..++|..+|++.. +.+...|...+..+...|+.++|..+|+++++. .| + ...|..++..+.+.|.+++|.
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHH
Confidence 445678888888753 456778999999999999999999999999984 55 3 456889999999999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHH-hhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDML-GRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l-~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
++|+.+++ ..|+ ...|...+... ...|+.+.|..+++.+.. +.++..|..++......|+++.|+.++++++.
T Consensus 155 ~i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 155 MIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999976 3343 44455444443 346899999999998764 45678999999999999999999999999999
Q ss_pred cCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 771 LEPDKAE----NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 771 l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|.++. .+......-...|+.+.+.++.+.+.+
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8876654 566667777788999999999888866
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.8e-07 Score=80.52 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
-...+...|++++|+..|+..++ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 34556667777777777777665 3444 55666667777777777777777665543 446677888888888888
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
+++.|...++++++++|+++..+..++++.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 8888888888888999988888887777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=7.5e-07 Score=84.33 Aligned_cols=142 Identities=10% Similarity=-0.025 Sum_probs=104.5
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
...+...|+++.|.+.|.++.+++..+|..+...|...|++++|++.|++.++ +.| +...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45667789999999999998888889999999999999999999999999998 577 667888899999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
...|+..+....-.+... | ...|. ..+.+ ..++..+..++...|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~-~-------~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLID-Y-------KILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEE-C-------GGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHH-H-------HHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988865211111000 0 00000 00111 2355666777788888888888888888888
Q ss_pred CCCcc
Q 037236 773 PDKAE 777 (953)
Q Consensus 773 p~~~~ 777 (953)
|+...
T Consensus 151 ~~~~~ 155 (192)
T d1hh8a_ 151 SEPRH 155 (192)
T ss_dssp CSGGG
T ss_pred CCcch
Confidence 76543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.5e-07 Score=79.59 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=81.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
-...+.+.|++++|+..|++... +.++.+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 45778899999999999998753 5578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037236 794 DVRMMRQRMKE 804 (953)
Q Consensus 794 ~a~~~~~~m~~ 804 (953)
+|...++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998887765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=3.3e-07 Score=87.96 Aligned_cols=113 Identities=7% Similarity=-0.100 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHH
Q 037236 672 PDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSL 748 (953)
Q Consensus 672 P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~l 748 (953)
|+...+......+...|++++|+..|+.+++ +.|+ ...|..+..+|.+.|++++|++.+++... .| ++..|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 5666666667777777777777777776655 3344 55566666666666666666666665543 23 34556666
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
+.++...|+++.|...++++++++|++...+....+.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 666666666666666666666666655544443333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=6.6e-07 Score=81.95 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
..+.|.+.|++++|+..|+++++ +.|+ ...|..+..+|.+.|++++|++.++++.. +.+..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 35566777777777777777766 3455 66777777777788888888877776643 345678888899999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHH--hcCCchHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYA--GSEKWDDVRMM 798 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~--~~g~~~~a~~~ 798 (953)
+++.|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888876643 44556666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.8e-06 Score=88.04 Aligned_cols=188 Identities=8% Similarity=0.008 Sum_probs=127.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHH
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH---KP--DTFTFV 678 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~P--~~~t~~ 678 (953)
....+|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+ ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678888888888888887651 12 35788899999999999999999998765211 11 235566
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-Ch-------hH
Q 037236 679 GILMACNH-AGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DA-------GI 744 (953)
Q Consensus 679 ~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~-------~~ 744 (953)
.+...|.. .|++++|.+.+++..+......+ ...+..+...|.+.|++++|++.+++... .| +. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 77777754 69999999999988654322222 44577889999999999999999987532 11 11 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHHHHHHHHh--cCCchHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN-----YVLVSNIYAG--SEKWDDVRMMRQ 800 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~~--~g~~~~a~~~~~ 800 (953)
+...+-.+...|+.+.|...++++.+++|..+.+ ...|...|.. .+++++|.+.++
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444445677899999999999999999865443 2334445544 356777777664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=4.3e-07 Score=87.10 Aligned_cols=96 Identities=7% Similarity=-0.011 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYA 714 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 714 (953)
|+..........|...|++++|+..|++.++ +.| +...|..+..+|...|++++|+..|+.+++ +.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHH
Confidence 4555566677788888888888888888888 467 667788888888888888888888887754 6776 77788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
.+..+|.+.|++++|+..++++.
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888888887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.3e-06 Score=79.84 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=81.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
....|.+.|++++|++.|++... +.+...|..+...+...|+++.|...++++++++|++..++..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 45678899999999999998764 4578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037236 794 DVRMMRQRMKE 804 (953)
Q Consensus 794 ~a~~~~~~m~~ 804 (953)
+|...++....
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.9e-06 Score=78.51 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=84.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
...+...|++++|++.|+++ ..|+..++..+..++...|++++|++.|++.++ +.|+ ...|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 45567778888888877653 245667777777888888888888888887766 4555 556666666666677
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
++++|++.|++... +++..+ .+...| +...+.....+..++.+|...|+|++|...++..
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~------~~~~~~------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLI------DYKILG------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEE------ECGGGT------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCccCchH------HHHHhh------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77666666655321 111100 000000 0001112345678999999999999999987765
Q ss_pred HH
Q 037236 803 KE 804 (953)
Q Consensus 803 ~~ 804 (953)
..
T Consensus 147 ~~ 148 (192)
T d1hh8a_ 147 TS 148 (192)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=8.9e-07 Score=76.26 Aligned_cols=107 Identities=14% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC---HHHHHHHHHhCCC-CCCh---hHHHHHH
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK---LDDAFKLIIEMPE-EADA---GIWSSLL 749 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~---~~eA~~~~~~~~~-~~~~---~~~~~ll 749 (953)
..+++.+...+++++|.+.|+...+ +.|+ +.++..+..+|.+.++ +++|+++++++.. .|++ .+|..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3566777778888888888888766 4454 6777778888876554 4468888887654 3433 3788899
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
.+|...|+++.|+..++++++++|++..+..++..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988777765544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.8e-06 Score=78.42 Aligned_cols=135 Identities=8% Similarity=-0.038 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDML 720 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 720 (953)
.+......+.+.|++++|+..|++.++. .|.... ..+.-......+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 4455566677777777777777777662 221000 0000000111110 23466788889
Q ss_pred hhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 721 GRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.+.|++++|++.+++... .| ++..|..++.++...|+++.|...++++++++|+|+.+...++.++...+...+..+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~ 151 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 151 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887654 44 778899999999999999999999999999999999999999999887776665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=6.2e-07 Score=76.31 Aligned_cols=88 Identities=9% Similarity=-0.043 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
.+...+.+.|++++|+..+++... .| ++.+|..++.++...|+++.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 356677888888888888887653 34 5788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 037236 793 DDVRMMRQRM 802 (953)
Q Consensus 793 ~~a~~~~~~m 802 (953)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=1.8e-05 Score=80.29 Aligned_cols=211 Identities=11% Similarity=-0.059 Sum_probs=131.6
Q ss_pred ChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 522 KSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK 601 (953)
Q Consensus 522 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 601 (953)
++++|.++|.+ ....|...|++++|++.|.+..+.... .++...
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~---------------~~~~~~---------- 75 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKK---------------AGNEDE---------- 75 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHH---------------TTCHHH----------
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHH---------------cCCCHH----------
Confidence 35666665544 356677888888888888877542110 000000
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCC----HHHHHHHHHHHH-hcCChHHHHHHHHHHHHC---
Q 037236 602 AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKD----VTSWNAIIGGHG-IHGYGKEAIELFEKMLAL--- 668 (953)
Q Consensus 602 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~--- 668 (953)
...++..+..+|.+.|++++|.+.+++.. ..+ ..++..+...|. ..|++++|++.|++..+.
T Consensus 76 -----~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 76 -----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 12345555666777777777777766543 111 335556666664 469999999999887652
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC
Q 037236 669 -GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA 740 (953)
Q Consensus 669 -g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~ 740 (953)
+-.+ -..++..+...+...|++++|..+|+++.+...-.+. ...+..++..+...|+++.|.+.+++... .|
T Consensus 151 ~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 1112 2345777888999999999999999998764332222 12344556667788999999999988754 22
Q ss_pred ---C---hhHHHHHHHHHHhc--CChhHHHHHHHHHhccCC
Q 037236 741 ---D---AGIWSSLLRSCRTY--GALKMGEKVAKTLLELEP 773 (953)
Q Consensus 741 ---~---~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~l~p 773 (953)
+ ......++.++... +.++.|...++++.+++|
T Consensus 231 ~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 1 23456666665542 246677777777777765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.12 E-value=1.3e-05 Score=73.57 Aligned_cols=93 Identities=6% Similarity=-0.025 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.|..+..+|.+.|++++|++.+++... +.+..+|..++.++...|+++.|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 466677888999999999999887653 456788999999999999999999999999999999999999999998877
Q ss_pred CCchHHH-HHHHHHHH
Q 037236 790 EKWDDVR-MMRQRMKE 804 (953)
Q Consensus 790 g~~~~a~-~~~~~m~~ 804 (953)
+...+.. ++++.|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 7665533 35555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.08 E-value=0.00072 Score=66.92 Aligned_cols=223 Identities=9% Similarity=-0.035 Sum_probs=143.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
+..|..|...+.+.+++++|++.|++..+.| +......|..+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--------------------------------------~~~A~~~Lg~~ 43 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGVL 43 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHH
Confidence 3456666666777788888888888877655 22222233344
Q ss_pred HHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 037236 618 YAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACN--- 685 (953)
Q Consensus 618 y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~--- 685 (953)
|.. ..+...|...+.... ..+...+..+...+.. .++.+.|...+++..+.|.. .....+...+.
T Consensus 44 y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 44 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK 120 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS
T ss_pred HHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC
Confidence 433 345666666666554 2344445555444433 45678888888888776522 22222222222
Q ss_pred -hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cC
Q 037236 686 -HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YG 756 (953)
Q Consensus 686 -~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g 756 (953)
.......+...+..... ..+...+..|...|.. ..+...+..+++......++..+..|...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 34456677777666533 2345666777777765 45677777777776656677777777766654 46
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCCC
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 807 (953)
|++.|...++++.+.. ++.++..|+.+|.. ..+.++|.+.+++.-+.|.
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8999999999998874 68889999999986 4489999999988877664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.3e-06 Score=71.24 Aligned_cols=92 Identities=8% Similarity=-0.014 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCC--cchHHHHHHH
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---GALKMGEKVAKTLLELEPDK--AENYVLVSNI 785 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 785 (953)
...+++.+...+++++|++.|++... +.++.++..+..++... ++.+.|...++++++.+|.+ ..++..||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35678888999999999999998764 55778899999888654 45667999999999998865 3488999999
Q ss_pred HHhcCCchHHHHHHHHHHH
Q 037236 786 YAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 786 y~~~g~~~~a~~~~~~m~~ 804 (953)
|...|++++|.+.++++-+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999888866
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.1e-05 Score=70.11 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hHHHHHHH
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE-------NYVLVSNI 785 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l~~~ 785 (953)
.+.+.+.+.|++++|++.|++... +.++.+|..+..++...|+++.|...++++++++|+++. +|..++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 455666677777777777665543 345778888888888889999999999999999888776 45557778
Q ss_pred HHhcCCchHHHHHHHHHHH
Q 037236 786 YAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 786 y~~~g~~~~a~~~~~~m~~ 804 (953)
+...+++++|...+++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8889999999998765543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3e-05 Score=71.24 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT 754 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~ 754 (953)
..+......+...|++++|+..|...++..+..+..... .......+ ...++..+..+|..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhchh-------HHHHHHHHHHHHHh
Confidence 345566678888899999999888887654333321110 00000000 12356778888899
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|+++.|+..++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888866
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=8.7e-05 Score=66.63 Aligned_cols=61 Identities=5% Similarity=-0.047 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..+...+...|+++.|...++++++++|++..+|..++.+|...|+|++|...++...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666667777777777777777777777777777777777777777776655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=1.4e-05 Score=73.57 Aligned_cols=131 Identities=12% Similarity=0.040 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
+......+...|++++|++.|+++++. .|. ........+. ..+.|. ...|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 445566677788888888888776641 110 0000111110 112333 55677788899
Q ss_pred hhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 721 GRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
.+.|++++|+..+++... +.++..|..++.++...|+++.|...++++++++|+|+.++..|..++.......+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988754 44678999999999999999999999999999999999999998888765544333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=1.9e-05 Score=66.67 Aligned_cols=86 Identities=10% Similarity=-0.011 Sum_probs=59.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR 722 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~ 722 (953)
+...+.+.|++++|+..|++.+. ..| +..+|..+..++.+.|++++|+..|+..++ +.|+ ...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 45556667777777777777776 456 456677777777777777777777777665 4455 6666667777777
Q ss_pred cCCHHHHHHHHHh
Q 037236 723 AGKLDDAFKLIIE 735 (953)
Q Consensus 723 ~g~~~eA~~~~~~ 735 (953)
.|++++|++.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777777776665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=2.4e-05 Score=71.99 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CChhHHHHHHHHHHh
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE-ADAGIWSSLLRSCRT 754 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~~~~~~~~ll~~~~~ 754 (953)
.+......+...|++++|+..|+++++.. + .........+.. ... .+...|..+...+..
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~----------~~~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---E----------GSRAAAEDADGA------KLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---H----------HHHHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh---h----------hhhhhhhhHHHH------HhChhhHHHHHHHHHHHHh
Confidence 34455666777888888888887765411 1 000011111110 111 245678888888999
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|+++.|...++++++++|+++.+|..+|.+|...|++++|...++...+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.81 E-value=0.00018 Score=64.44 Aligned_cols=126 Identities=10% Similarity=-0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDML 720 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 720 (953)
.+......+.+.|++.+|+..|++++.. .|.... ..-......... .....|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4555667788888999999888888763 221000 000000000000 1124567788889
Q ss_pred hhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 721 GRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
.+.|++++|++.+++... +.++.+|..++.++...|+++.|...++++++++|+|+.+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999998887653 4467899999999999999999999999999999999988877766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=7.4e-06 Score=73.06 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=78.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHA----------GLVENGLKYFSQMQKLHAVKPK-LEHYACV 716 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 716 (953)
|-+.+.+++|++.|++.++ +.| |..++..+..+|... +.+++|+..|+++++ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 3445567888888888887 567 556677777666543 445677777777765 5565 5666666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
..+|...|++. ++... ..++++.|...++++++++|++..++..|+......+.+.+
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666554321 11110 11245789999999999999999988888877654443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.8e-06 Score=91.90 Aligned_cols=91 Identities=8% Similarity=-0.075 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
...+..+...+.+.|+.++|...++..........+..++..++..|+++.|+..++++++++|+++.+|..||.+|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 33444455555555555555544433221111234445555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHH
Q 037236 790 EKWDDVRMMRQ 800 (953)
Q Consensus 790 g~~~~a~~~~~ 800 (953)
|++.+|...+.
T Consensus 200 ~~~~~A~~~y~ 210 (497)
T d1ya0a1 200 GDHLTTIFYYC 210 (497)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00017 Score=65.80 Aligned_cols=112 Identities=6% Similarity=-0.020 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
...+.-.+..+...|++++|...|+..+......+....- .......+ ...++..+..++.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hhhhcchh-------HHHHHHhHHHHHH
Confidence 4556667778888888888888888776543332221100 00000000 1345667777889
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++++|++..+|..++.+|...|++++|...++...+
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888766
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00015 Score=62.71 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-----LEHYA 714 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 714 (953)
.+..+...|...|++++|++.|++.++ +.| +...+..+..+|.+.|++++|+..++.+++...-.+. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345566777788888888888888887 456 5667777888888888888888888887653221121 12445
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.+.+.+...+++++|++.+++.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 5556666666666666666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=0.011 Score=59.59 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=103.6
Q ss_pred CCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHH
Q 037236 59 ADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSG 138 (953)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 138 (953)
.|+..-...+...|-+.|.++.|..++..+. -+..++..|.+.+++..|..++.+.. +..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 4555556667778888888888888887665 35667778888888888888777543 45578888888
Q ss_pred HhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHH
Q 037236 139 FTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEE 218 (953)
Q Consensus 139 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 218 (953)
+.+.....-| .+.. .....++.....++..+-..|..+....+++..... -..+..+++-++..|++.+. +.
T Consensus 79 l~~~~e~~la-----~i~~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k 150 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCG-LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK 150 (336)
T ss_dssp HHHTTCHHHH-----HHTT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH
T ss_pred HHhCcHHHHH-----HHHH-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH
Confidence 7776554332 1222 334445556677888888888888888887766532 24566778888888988653 33
Q ss_pred HHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 219 MVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 219 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
-.+.+... .+.....-++..+-+.+.+.++.-++.++
T Consensus 151 l~e~l~~~--s~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 151 MREHLELF--WSRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHH--STTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHhc--cccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 33333332 12334445566666666666666666665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.0034 Score=63.34 Aligned_cols=124 Identities=11% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCch
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVD 285 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 285 (953)
+.+.+.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+. -+..+|..+..+|.......
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ---------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--------CCHHHHHHHHHHHHhCcHHH
Confidence 33344445555555555554433 555555555555555555555554 23445555555555444332
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcC
Q 037236 286 LGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN---NKNVVSWNTIIGAFSMA 347 (953)
Q Consensus 286 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~ 347 (953)
.+ .+.......++.....++..|-..|.+++...+++... ..+...++-++..|++.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 21 11111222333334455666666666666666665422 23444456666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=6.1e-05 Score=66.84 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=63.6
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
.+.+.+++|+..|+..++ +.|+ ...+..+..+|.+.+++..+.+- .+.++.|..
T Consensus 8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~----------------------~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDA----------------------KQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHH----------------------HHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHH----------------------HHHHHHHHH
Confidence 344556666666666654 3444 45555555555554444333321 234578999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCC-----------chHHHHHHHHHHH
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEK-----------WDDVRMMRQRMKE 804 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~~ 804 (953)
.++++++++|+++.+|..+|++|...|+ +++|.+.+++.-+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 9999999999999999999999998765 5667776665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.018 Score=56.30 Aligned_cols=229 Identities=13% Similarity=0.000 Sum_probs=111.9
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc-CCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHH-H
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED-KSLVSWNTMIAGYSQ----NKLPVEAIVLFRRMFSIGVQPCEISIVSIL-S 581 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~ 581 (953)
..+..|...+.+.+++++|.+.|++..+ .|..++..|...|.. ..++..|...+......+...-...+..+. .
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~ 82 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 82 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccc
Confidence 3444555667778888888888887754 355566666666665 456677777777666554211111110000 1
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
.+......+.+...+....+.|.. .....+...+.. +.........|...
T Consensus 83 ~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~---------------------------~~~~~~~~~~a~~~ 132 (265)
T d1ouva_ 83 GQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHD---------------------------GKVVTRDFKKAVEY 132 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH---------------------------CSSSCCCHHHHHHH
T ss_pred ccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccC---------------------------CCcccchhHHHHHH
Confidence 111223344444444444443321 111111111111 00112234444555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHH
Q 037236 662 FEKMLALGHKPDTFTFVGILMACNH----AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLI 733 (953)
Q Consensus 662 ~~~m~~~g~~P~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~ 733 (953)
+.+.... .+...+..|...+.. ..+...+..+++...+ . .+......|..+|.. ..++++|...|
T Consensus 133 ~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 133 FTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred hhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccc-c---cccccccchhhhcccCcccccchhhhhhhH
Confidence 5444442 234444444444442 3344555555555432 1 233444444444443 44666677766
Q ss_pred HhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 037236 734 IEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 734 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p 773 (953)
++.....++..+..|...+.. ..|.+.|...++++.+..+
T Consensus 206 ~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 206 SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 665544555566666555543 2367777777777766654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=5.5e-05 Score=83.11 Aligned_cols=165 Identities=8% Similarity=-0.047 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhc--cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 554 PVEAIVLFRRMFSIGVQPCEISIVSILSACS--QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 554 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
+..+++.++...+....++.......+..+. ..+.++.+.+.+....+.. .++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 4456666666665544444433322222111 1122222222222211111 124455666777777777777777776
Q ss_pred hhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 632 DRLKDKDV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 632 ~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
.....++. .++..+...+...|++++|+..|++..+ +.| +..+|+.|...+...|+..+|..+|.+.+. +.|.
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~---~~~~ 218 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA---VKFP 218 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS---SSBC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCC
Confidence 66543332 3566677777777888888888887777 567 456777777777778888888877777754 3333
Q ss_pred -hhHHHHHHHHHhhcC
Q 037236 710 -LEHYACVVDMLGRAG 724 (953)
Q Consensus 710 -~~~~~~lv~~l~~~g 724 (953)
...+..|..+|.+..
T Consensus 219 ~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 219 FPAASTNLQKALSKAL 234 (497)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhh
Confidence 666777766665443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.0001 Score=72.57 Aligned_cols=125 Identities=15% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKL 726 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~ 726 (953)
....|++++|+..+++.++ ..| |...+..+...++..|++++|...|+...+ +.|+ ...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 3457899999999999998 577 678888999999999999999999998876 5676 44455555555555555
Q ss_pred HHHHHHHHhCCC--CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 727 DDAFKLIIEMPE--EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 727 ~eA~~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+++..-...... +|+ ...+......+...|+.+.|...++++.++.|..+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 554443322111 232 2333344455677889999999999888888877654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.00021 Score=65.67 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL-DDAFKLIIEMPEEADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~-~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 757 (953)
.........|++++|.+.|...+..+.=.+-... ...... .++..+- +.....|..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~-----~~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALV-----EDKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHH-----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCC
Confidence 3345666777888888777777653321110000 000000 1111111 1123567888999999999
Q ss_pred hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----HCCCcc
Q 037236 758 LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK-----ERGLQK 809 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~~~~~ 809 (953)
++.|...++++++++|.+...|..|+.+|...|++++|.+.++.++ +.|+.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999888774 346654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00038 Score=56.19 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
..++..|..++...|+++.|...++++++++|+++.++..+..+.
T Consensus 46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 457888999999999999999999999999999998888775543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.0028 Score=57.81 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEH 712 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 712 (953)
...+..++..+...|++++|+..++++++ ..| +...|..++.++...|+.++|++.|+++.+ ..|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45678889999999999999999999999 678 788899999999999999999999998744 3689998654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.0041 Score=55.37 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=28.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC----------hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK----------LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----------~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
.....+.|++++|+..|++.++...-.|+ ...|+.+..+|...|++++|.+.++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~ 79 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 79 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh
Confidence 44455667777777777777654433333 1234444555555555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.82 E-value=0.00036 Score=68.56 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=88.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~ 760 (953)
....|++++|+..+++.++ ..|+ ...+..++.+|++.|++++|.+.++.... .|+ ...+..+...+...+..+.
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 3467999999999999987 5676 78999999999999999999999998754 454 5566666665554443333
Q ss_pred HHHHHHHH-hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKVAKTL-LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+....... +..+|++...+...+.++...|++++|...++.+.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32222221 2235666677778899999999999999998887664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.80 E-value=0.0028 Score=56.53 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=72.2
Q ss_pred HHHHHH--HHHHHhcCChHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 037236 640 TSWNAI--IGGHGIHGYGKEAIELFEKMLALG-HKPD----------TFTFVGILMACNHAGLVENGLKYFSQMQKLHA- 705 (953)
Q Consensus 640 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g-~~P~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 705 (953)
.+|..+ ...+...|++++|++.|++.++.. -.|+ ..+|..+..++...|++++|...++..++...
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 444567799999999999988721 1121 36788899999999999999999888765221
Q ss_pred ---CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 706 ---VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 706 ---~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
..++.. . ....++..++.++...|++++|...+++++++.|+..
T Consensus 88 ~~~~~~~~~--~-------------------------~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 88 RGELNQDEG--K-------------------------LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HCCTTSTHH--H-------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccc--c-------------------------hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 111100 0 0012455666777777777777777777777765433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0025 Score=51.07 Aligned_cols=60 Identities=12% Similarity=-0.011 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDK-------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+-.++..+...|+++.|...+++++++.|.+ +.+|..|+++|.+.|++++|...++++-+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3456677788888888888888888775543 45788999999999999999998888765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.29 E-value=1 Score=36.19 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=94.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+...|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+.+.|-. ....++..+.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 45568888888888888763 233334444444444555566666666665544444421 12334444544443
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
+.....--+......|.-+.-++.++.+++-+.-+|...+.++++|.+.|...++..+.++.-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 23334445566678888888899999988877778999999999999999999999999988888875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=4.5 Score=41.70 Aligned_cols=54 Identities=9% Similarity=-0.070 Sum_probs=32.3
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIG 568 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 568 (953)
+..+.+.++++.....|..-+ .+...-.....+..+.|+.++|...+..+-..|
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 445666677766555443221 133333445666777888888888777776655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.95 E-value=0.17 Score=41.44 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhhcC---CHHHHHHHHHhCCC-CC-Ch-hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 710 LEHYACVVDMLGRAG---KLDDAFKLIIEMPE-EA-DA-GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g---~~~eA~~~~~~~~~-~~-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
+.+--....++.+.. +.++|+.++++... .| +. ..|-.|.-+|.+.|+++.|.+.++++++++|+|..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 334334444444433 33455555554432 22 21 34445555555566666666666666666665553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.17 E-value=0.61 Score=39.04 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCCC
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 807 (953)
|.+.|...++++.+. .++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 455566666665543 345666667777665 3466677777766666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.64 E-value=1.5 Score=36.49 Aligned_cols=77 Identities=8% Similarity=-0.074 Sum_probs=40.9
Q ss_pred CHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 037236 623 CLEQSRRVFDRLK-DKDVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH----AGLVENG 693 (953)
Q Consensus 623 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~----~g~~~~a 693 (953)
+.++|.+.|++.. ..++.+...|...|.. ..+.++|+++|++..+.| +......|...|.+ ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHH
Confidence 3444444444433 2233444444443332 345677777777777754 33344445555544 3467777
Q ss_pred HHHHHHHHH
Q 037236 694 LKYFSQMQK 702 (953)
Q Consensus 694 ~~~~~~m~~ 702 (953)
.++|+...+
T Consensus 115 ~~~~~~Aa~ 123 (133)
T d1klxa_ 115 VKTFEKACR 123 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.47 E-value=0.65 Score=37.82 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 661 LFEKMLALG-HKPDTFTFVGILMACNHAGL---VENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 661 l~~~m~~~g-~~P~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+-++....+ -.|...|-..+..++.++.. +++|+.+++...+. .|. .+.+-.|.-+|.+.|++++|.+.++
T Consensus 21 ~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~ 97 (124)
T d2pqrb1 21 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVD 97 (124)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444442 23455566667777776544 46788888887652 343 3455667777888888888888888
Q ss_pred hCCC-CCC
Q 037236 735 EMPE-EAD 741 (953)
Q Consensus 735 ~~~~-~~~ 741 (953)
.+.. +|+
T Consensus 98 ~~L~ieP~ 105 (124)
T d2pqrb1 98 TLFEHERN 105 (124)
T ss_dssp HHHHHCTT
T ss_pred HHHccCCC
Confidence 7653 454
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.90 E-value=4.7 Score=32.28 Aligned_cols=140 Identities=11% Similarity=-0.010 Sum_probs=83.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
+.-.|..++..++..+..... +..-++-++--.....+-+...+.++.+-+. + | ..+|+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHH
Confidence 344677777777777776532 2222332332222222222222222222211 1 1 1245666655
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 037236 628 RRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV 706 (953)
Q Consensus 628 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 706 (953)
...|-.+.. +....+.-++.+.++|+-++-.++++.+.+. -+|++.....+.+||-+.|...++.+++.++.+ .|+
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 555554432 3344555677788889888888888887774 478888888999999999999999999888865 444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.84 E-value=27 Score=35.34 Aligned_cols=351 Identities=10% Similarity=0.006 Sum_probs=174.6
Q ss_pred HHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccch
Q 037236 411 AFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 411 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
..+..+.+.++.......+..-+ .++..--....+..+.|+..+|...+..+-..|.. ....
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~---------------- 138 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNA---------------- 138 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTH----------------
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchH----------------
Confidence 34556667777777666665432 24444446677788889999998888877655421 1122
Q ss_pred hhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
...++....+.|.. +....-.-+......|+...|..+...++..........+..... ...+...... ..
T Consensus 139 c~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~ 209 (450)
T d1qsaa1 139 CDKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TG 209 (450)
T ss_dssp HHHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SC
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CC
Confidence 22333333333332 222223334455566788888888777765443344444443322 2222221111 12
Q ss_pred CChhhHHHHHHHhccc--cchHHHHHHHHHHHHcCCCCCccHH---HHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHH
Q 037236 571 PCEISIVSILSACSQL--SALRLGKETHCYALKAILTNDAFVA---CSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWN 643 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~ 643 (953)
++......+..+..+. .+.+.+...+............... ..+...+...+..+.|...+.... ..+.....
T Consensus 210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 289 (450)
T d1qsaa1 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE 289 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH
Confidence 2223323333333332 3344555555444433221111111 111112223455555655554433 22332222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH-HHhh
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD-MLGR 722 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~-~l~~ 722 (953)
-.+......++...+...|+.|-... .-...-..=+..+....|+.++|..+|..... .++ -|.-|.. .++.
T Consensus 290 w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~Lg~ 362 (450)
T d1qsaa1 290 RRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRIGE 362 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHHHcCC
Confidence 23333455677888887777664310 11223334566777888888888888887742 232 3444421 2221
Q ss_pred cCCHHHHHHHHHhCCCCCChh-H---HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 037236 723 AGKLDDAFKLIIEMPEEADAG-I---WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~~~~~~-~---~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 798 (953)
.-.+. ....+..+... . -...+..+...|....|+..+..+.+-. ++.-...++.+..+.|.++.|+..
T Consensus 363 ~~~~~-----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 363 EYELK-----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp CCCCC-----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCC-----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence 11100 00001111110 0 0112334567788888888888776533 466777888888899999888876
Q ss_pred HHHH
Q 037236 799 RQRM 802 (953)
Q Consensus 799 ~~~m 802 (953)
-...
T Consensus 436 ~~~~ 439 (450)
T d1qsaa1 436 TIAG 439 (450)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5443
|