Citrus Sinensis ID: 037237
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1267 | 2.2.26 [Sep-21-2011] | |||||||
| Q70EL1 | 1684 | Inactive ubiquitin carbox | yes | no | 0.214 | 0.161 | 0.256 | 1e-14 | |
| Q8BL06 | 1588 | Inactive ubiquitin carbox | yes | no | 0.163 | 0.130 | 0.287 | 3e-14 | |
| Q6IE24 | 1588 | Inactive ubiquitin carbox | yes | no | 0.214 | 0.171 | 0.250 | 1e-13 | |
| P15975 | 1069 | Inactive ubiquitin carbox | no | no | 0.215 | 0.255 | 0.257 | 5e-10 | |
| Q70EK8 | 1073 | Inactive ubiquitin carbox | no | no | 0.215 | 0.254 | 0.251 | 9e-10 |
| >sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 134/331 (40%), Gaps = 59/331 (17%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N ++ LWHL FR F R+ T H +GD CI CAL +F C
Sbjct: 36 EPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQ--CSSE 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+V +PS +LR AL D+ + M+D++E + +L +H F DE
Sbjct: 92 KV-LPS--DTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH---------FHIADE 139
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNM----- 1122
+ + C++ C H F M +E+ C C A + + ++ +L N
Sbjct: 140 TKEDI-CTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICML 198
Query: 1123 --KKTPRGSSFDVLLKQLVLNG-LLNCGA-CGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178
++ P S F LL+ G L NC + CG+ I L P + TIG++
Sbjct: 199 ERREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLV------- 251
Query: 1179 IEVIFGYSWLEFAVIGWQRD-CESSEDVLSTLSALSAELDISNLFEGYPPDNI----YFL 1233
W D + +EDV+ +L L + +LF D +L
Sbjct: 252 ----------------WDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELYL 292
Query: 1234 ASMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264
M+C + Y F + + K++ D A
Sbjct: 293 VGMICYYG--KHYSTFFFQTKIRKWMYFDDA 321
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Has no peptidase activity. Homo sapiens (taxid: 9606) |
| >sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2 | Back alignment and function description |
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| >sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1267 | ||||||
| 225456629 | 1653 | PREDICTED: uncharacterized protein LOC10 | 0.683 | 0.523 | 0.275 | 3e-79 | |
| 297734043 | 1552 | unnamed protein product [Vitis vinifera] | 0.662 | 0.541 | 0.269 | 2e-75 | |
| 255540879 | 1617 | conserved hypothetical protein [Ricinus | 0.642 | 0.503 | 0.257 | 3e-69 | |
| 356565061 | 1611 | PREDICTED: uncharacterized protein LOC10 | 0.635 | 0.499 | 0.253 | 9e-67 | |
| 297819400 | 1571 | hypothetical protein ARALYDRAFT_485153 [ | 0.597 | 0.481 | 0.252 | 4e-66 | |
| 449441049 | 1594 | PREDICTED: uncharacterized protein LOC10 | 0.229 | 0.182 | 0.420 | 2e-64 | |
| 4678339 | 1528 | putative protein [Arabidopsis thaliana] | 0.679 | 0.563 | 0.247 | 9e-64 | |
| 186510760 | 1568 | Ubiquitin carboxyl-terminal hydrolase-re | 0.679 | 0.549 | 0.247 | 9e-64 | |
| 356513561 | 1581 | PREDICTED: uncharacterized protein LOC10 | 0.593 | 0.475 | 0.252 | 1e-63 | |
| 110741787 | 783 | hypothetical protein [Arabidopsis thalia | 0.229 | 0.371 | 0.410 | 7e-62 |
| >gi|225456629|ref|XP_002266656.1| PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 283/1029 (27%), Positives = 470/1029 (45%), Gaps = 163/1029 (15%)
Query: 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHH---SLAEKAGKGTD---TQL 108
R+L+A + G+ KAL ++KE H +S H A IH ++ K D +
Sbjct: 71 RSLTALRRGNHNKALRIMKELSVRHDNSVH----SALIHRVQGTVCVKVASIIDDPNAKQ 126
Query: 109 EHLT----TAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYD 164
HL TA AV PN +E + +A LLY+ A KE++ V+ CER L I P
Sbjct: 127 RHLKNAIETAKKAVELSPNSIEFAHFYANLLYEAAS-EGKEYEEVVHECERALSIDSP-- 183
Query: 165 TLLGSNLVDMFTGSLLEKEKVGMSNRESKIESMKQQIMKCLQDSRSQKNRKLTAMKADGE 224
VD SL ++ + +S E++I ++ ++ +Q S +GE
Sbjct: 184 -------VDPAKESLQDESQQKISTVEARIGHVQNELRSLIQKSNIASISTWMKNLGNGE 236
Query: 225 E---------VEDDV-------------IKKDLMGVEMRKKQVEEIIK--DLEQQKT--- 257
E V +D IKK E R+K++E + L QQK+
Sbjct: 237 EKFRLIPIRRVSEDPMEVRLVQSKRPNEIKKATKTQEERRKEIEVRVAAARLLQQKSDAP 296
Query: 258 --------------------------YYSTEKYEQNVEKVEKYVSFWSSGLNSDKKRGFL 291
+ K+ VE+ + S+W+S ++ + ++ L
Sbjct: 297 QSQSEGDRTDKASETSSGPGQRVGERRKNARKFGSTVERKVRVRSYWNS-MSFNMRKDLL 355
Query: 292 KVNKEELKKYVKSLKNDFVEKIFSEALSFAEEHKTWKFSECFVCVEKIGNPQLCEKHFRS 351
K+ +LK + S+K+ + SEALSF E +K WKF C C EK + +L +H
Sbjct: 356 KIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQ 415
Query: 352 SHWNHLEIMVQPLMPVDFRSEWIEMIVKGVWKPVDTDKGIEIIVNKMNSDSNG------T 405
H +L +Q ++P + +EWIEMIV WKP+D ++++ N+ N T
Sbjct: 416 EHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKMLKNESKCQQNELIDEFYT 475
Query: 406 ANSRLH-----------TTEKGLE----VCKDYVQ---------------GTNGDEYY-- 433
N+ + EKG+ C + V+ G G + Y
Sbjct: 476 GNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYLL 535
Query: 434 -QNWPLCDDSERVEILESIHSLFLLLLRGLARGRRVVGWAMHYAIYMLETIAPVLQFKCH 492
+WPL DDSER ++LE IH LF +L++ + M + L+ IA Q +
Sbjct: 536 ANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLNY 595
Query: 493 SL-KIPEVICFLGASQLRELNFFVHDLTRTCGLNDYSDIIRNLIDNHYT---GLNVKERV 548
+ + P ICFLGASQLR+L F+ +L+ CGL SD + +D+ + ++KE V
Sbjct: 596 GVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKENV 655
Query: 549 VFNRDLTCLLLDERLLVGEFTNANYFDVDADDDSAVTCCHDMCKDD-VHRDGNKIVSWLY 607
+ N D +CLLLDE LL E T+ V DD+A +C ++ V DG ++SW++
Sbjct: 656 LLNGDASCLLLDEHLLPTENTSTASH-VAVTDDAATETSPIICNENGVQPDGGSLLSWIF 714
Query: 608 SNPVVGKHLMSWTRLRDSKRGRGKEVLRIILEEFLHLTTAQSRLSKLRGRMEALWAIQTI 667
+ P + L SW R+R+ K +G E+L+++ +EF HL + R + EAL A++ +
Sbjct: 715 TGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDL 774
Query: 668 CIQEIKNREQRPERAPQPYIELLRKRKNYIQGNGD----IASKTESEMIPHVLKEA-VLA 722
C++E K RE + + +LRKR+ ++ + + I+++ E + + +VLKEA L
Sbjct: 775 CLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLN 834
Query: 723 LS-----------SDHQCGLDKCE-----LEDALKHTDNCVLLALQKLKMEMLKKMAFVD 766
++ + H C L+ E +D L D C+ +A+Q+ K ++ +++ +D
Sbjct: 835 MNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEVAIQRQKEQLSVELSKID 894
Query: 767 ATILRHIEVLQMYIPVLEKLCLYDYRSIIVPLLKLFLQVGKVVDELIEIEEKKLKEHVEN 826
A I+R++ +Q LE + +DYRSII+PLLK F++ L ++ EK + +
Sbjct: 895 ARIMRNVTGMQQLELTLEPVSAFDYRSIILPLLKSFMRA-----HLEDLAEKDATQKSDA 949
Query: 827 QKH-FECEASLRARKHGAGFTNEAA---DVPVLSDNPNSKVGENADEMSATEEKQLEAHP 882
+ F E +L ++K G ++ + D + + E+ + H
Sbjct: 950 AREAFLAELALDSKKSAIGGSDNSRHNHDKTKEKKKGKEYRKMKDSKGTGGSEQHVLHHV 1009
Query: 883 EYQSQFEPGATLGVNEFGFGFTNEAAVVCSSVLSDNPISRDGE--NADELKELEREIEAY 940
+ P A+ G + + VV SV DN ++ E EL+ ER++E
Sbjct: 1010 TTEQDSSPVASDGEH------PDSEPVV--SVNDDNSKHQEEELRRKIELEAEERKLEET 1061
Query: 941 LEYWRQFEN 949
LEY R+ EN
Sbjct: 1062 LEYQRRIEN 1070
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734043|emb|CBI15290.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255540879|ref|XP_002511504.1| conserved hypothetical protein [Ricinus communis] gi|223550619|gb|EEF52106.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356565061|ref|XP_003550763.1| PREDICTED: uncharacterized protein LOC100800030 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297819400|ref|XP_002877583.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] gi|297323421|gb|EFH53842.1| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449441049|ref|XP_004138296.1| PREDICTED: uncharacterized protein LOC101212702 [Cucumis sativus] gi|449477596|ref|XP_004155067.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229576 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|4678339|emb|CAB41150.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|186510760|ref|NP_190372.3| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi|332644822|gb|AEE78343.1| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356513561|ref|XP_003525481.1| PREDICTED: uncharacterized protein LOC100799759 [Glycine max] | Back alignment and taxonomy information |
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| >gi|110741787|dbj|BAE98837.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1267 | ||||||
| TAIR|locus:2097835 | 1607 | AT3G47910 [Arabidopsis thalian | 0.249 | 0.196 | 0.336 | 4.9e-78 | |
| TAIR|locus:2097935 | 1568 | AT3G47890 [Arabidopsis thalian | 0.250 | 0.202 | 0.354 | 1.1e-64 | |
| TAIR|locus:2200350 | 1101 | AT1G65200 [Arabidopsis thalian | 0.157 | 0.180 | 0.254 | 2.2e-36 | |
| TAIR|locus:2200360 | 1147 | AT1G65120 [Arabidopsis thalian | 0.430 | 0.476 | 0.221 | 2.7e-36 | |
| TAIR|locus:2200355 | 1094 | AT1G65110 [Arabidopsis thalian | 0.407 | 0.471 | 0.224 | 1.9e-35 | |
| TAIR|locus:2153157 | 1149 | AT5G51530 [Arabidopsis thalian | 0.166 | 0.183 | 0.226 | 4.9e-29 | |
| TAIR|locus:2042072 | 1122 | AT2G27630 [Arabidopsis thalian | 0.131 | 0.147 | 0.251 | 4e-28 | |
| TAIR|locus:2042016 | 1106 | AT2G27650 [Arabidopsis thalian | 0.155 | 0.178 | 0.275 | 1.6e-26 | |
| TAIR|locus:2156156 | 1094 | AT5G61940 [Arabidopsis thalian | 0.172 | 0.200 | 0.256 | 2e-24 | |
| TAIR|locus:2156161 | 1132 | AT5G61950 [Arabidopsis thalian | 0.153 | 0.171 | 0.253 | 1.9e-22 |
| TAIR|locus:2097835 AT3G47910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 475 (172.3 bits), Expect = 4.9e-78, Sum P(3) = 4.9e-78
Identities = 111/330 (33%), Positives = 169/330 (51%)
Query: 860 NSKVGENADEMSATEEKQLEAHPEYQSQFEPGATLGVNEFGFGFTNEAAVVCSSVLSDNP 919
+S+ N ++ +QL+A + + +F+ V + + S + +
Sbjct: 1192 HSETLRNNGDVGTKTLRQLQAEDDDEERFQADMQRAVLQ-SLDVYQGGRNMASCLRTPLE 1250
Query: 920 ISRDGENADELKELEREIEAYLEYWRQFEN--GTTDSFVNMIVKSLWHLXXXXXXXXXXX 977
++ DG +D+ E R + +N G + F+N+I++SLW+L
Sbjct: 1251 VNNDGGLSDDTME-SRSSTGVTIFGTGLQNEVGEYNCFLNVIIQSLWNLELFRAEFLRSS 1309
Query: 978 QTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDKNICKQAKM 1037
H+H+GDPC+VC+LY++F ALS A + Q E P APSSLR+AL+ D + ++A+M
Sbjct: 1310 TREHHHVGDPCVVCSLYEIFTALSAASSEKQNE-PVAPSSLRIALSNLYPDSSFFQEAQM 1368
Query: 1038 NDSSELLQAILESLHESFDTVNC--DFQSQDEY-EGSLDCSSAGCFVHIIFGMDHYEKVN 1094
ND+SE+L I + LH SF + D S D GS DC++ C H +FGMD +E++N
Sbjct: 1369 NDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDCANRTCIAHSLFGMDIFEQLN 1428
Query: 1095 CVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDXXXXXXXXXXXXXC----GACG 1150
C C + + KYTS F +NA LR MK T +SFD C G CG
Sbjct: 1429 CYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNLVEMNHQLACDPETGGCG 1488
Query: 1151 QINYIHHTLWRLPHVFT--IGMLRVCNTIE 1178
++N+IHH L PHVFT +G C T+E
Sbjct: 1489 KLNHIHHILTTPPHVFTTVLGWQNTCETVE 1518
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| TAIR|locus:2097935 AT3G47890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200350 AT1G65200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200360 AT1G65120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200355 AT1G65110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2153157 AT5G51530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2042072 AT2G27630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2042016 AT2G27650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2156156 AT5G61940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2156161 AT5G61950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.4.19.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1267 | |||
| pfam04780 | 463 | pfam04780, DUF629, Protein of unknown function (DU | 7e-55 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 5e-14 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-06 | |
| pfam04781 | 112 | pfam04781, DUF627, Protein of unknown function (DU | 1e-04 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-04 |
| >gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629) | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 7e-55
Identities = 116/455 (25%), Positives = 191/455 (41%), Gaps = 50/455 (10%)
Query: 276 SFWSSGLNSDKKRGFLKVNKEELKKYVKSLKNDFVEKIFSEALSFAEEHKTWKFSECFVC 335
SFW GL+ KR FLKV+ +L YV+ + + + LSFA E++ W+F C C
Sbjct: 5 SFWV-GLDDKTKRNFLKVSIAKLISYVERVYGREGREALEQVLSFARENRKWRFWMCRTC 63
Query: 336 VEKIGNPQLCEKHFRSSHWNHLEIMVQPLMPVDFRSEWIEMIVKGVWKPVDTDKGIEIIV 395
+K + + C+ H H + + MP +W I G W+PVD +E+I
Sbjct: 64 SKKFSSSEECKNHLEQEHAAKFKPSSEMDMPQRIDKDWARKISVGDWEPVDAAAAVEMIK 123
Query: 396 NKMNSDSNGTANSRLHTTEKGLEVCKDYVQGTNGDEYYQN-----WPLCDDSERVEILES 450
N+ L+ K++V Y+N WPL DD ER ++L+
Sbjct: 124 NR-------------------LKDVKEFV--------YKNGWSKDWPLADDEERSKLLKE 156
Query: 451 IHSLFLLLLRGLARGRRVVGWAMHYAIYMLETIAPVLQF--KCHSLKIPEVICFLGASQL 508
I L + L + W M + + L + Q+ C ++ P+ ICFL +L
Sbjct: 157 IKLLLVSLCDLKILSCSLRDWVMQFTVKHLAKLEVSKQYLDDCSLVETPQSICFLECDEL 216
Query: 509 RELNFFVHDLTRTCGLNDYSDIIRNLIDNHYTGLNVKERVVFNRDLTCLLLDERLLVGEF 568
++ F+ L C +D + ++ +D+ VKE++ + + LLLD+RLL E
Sbjct: 217 NQILKFLKQL--KCERDDGTSLVCKAVDSFLDNSRVKEKIDLDPQFSFLLLDKRLLKSE- 273
Query: 569 TNANYFDVDADDDSAV-TCCHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKR 627
+ DD+ + + VH G+ I+SWL+ P V K S +R+
Sbjct: 274 ------EAPFDDEGTINVFDPNAHYAKVHPQGDDILSWLFDYPSVDKEFPSP--IREHNL 325
Query: 628 GRGKEVLRIILEEFLHLTTAQSRLSKLRGRMEALWAIQTICIQEIKNREQRPERAPQPYI 687
VLR + L T ++ ++ AL + +CI E + R E Y
Sbjct: 326 DIWLAVLRAVQFTCRTLETKYAKKVQMLDYDAALTEAEDLCISEDERRNNLLEDQWSSYA 385
Query: 688 ELLRKR---KNYIQGNGDIASKTESEMIPHVLKEA 719
LLR + + + +K + VL+ A
Sbjct: 386 SLLRDKCEELVGRDDDNSLTTKLFLCAVRDVLEGA 420
|
This family represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. Length = 463 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|147106 pfam04781, DUF627, Protein of unknown function (DUF627) | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1267 | |||
| PF04780 | 466 | DUF629: Protein of unknown function (DUF629); Inte | 100.0 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.97 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 99.97 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.95 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.95 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.95 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 99.95 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.95 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.95 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.94 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.91 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.9 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 99.9 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.86 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.85 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.84 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 99.82 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 99.81 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.79 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.71 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.67 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.49 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 98.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 95.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 94.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.79 | |
| PF13894 | 24 | zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP | 94.74 | |
| PF00096 | 23 | zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 | 94.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 94.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 94.1 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 93.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 93.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 92.79 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.47 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 92.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 92.17 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 91.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 89.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 89.67 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 89.06 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 88.82 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 88.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 88.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 87.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 87.47 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 87.01 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 86.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 85.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 85.75 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 85.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 85.12 | |
| PF12874 | 25 | zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG | 84.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 84.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 84.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 83.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 83.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 83.15 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 83.11 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 82.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 81.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 81.27 | |
| PF04959 | 214 | ARS2: Arsenite-resistance protein 2; InterPro: IPR | 81.14 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 80.87 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 80.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 80.6 |
| >PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-137 Score=1191.74 Aligned_cols=455 Identities=33% Similarity=0.593 Sum_probs=440.7
Q ss_pred HHHHhhhccCCChhhhccceeeehHHHHHHHHhhccchHHHHHHHHHHHHHhcCceeeeecCccccccCChHHHHHHhHh
Q 037237 272 EKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLKNDFVEKIFSEALSFAEEHKTWKFSECFVCVEKIGNPQLCEKHFRS 351 (1267)
Q Consensus 272 ~~~r~yW~~~ls~e~kr~FL~V~i~eLksy~~~~~~~~~~~~Ls~al~fak~~~~WrfW~C~~C~~kF~d~~~~~~H~~~ 351 (1267)
++||+||++ ||+|+||+||+|+|++|++||.+++++.++++|++||+||++|++|+||+||+|++||+++++|++||++
T Consensus 1 ~~vr~yW~s-ms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~ 79 (466)
T PF04780_consen 1 DRVRSYWNS-MSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQ 79 (466)
T ss_pred CchhHhhcc-CCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHH
Confidence 479999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcccccCCCCccccHHHHHhhhcCCccccchhhHHHHHhhhcccCCCCCCCCCCcccccccccccccccCCCCCc
Q 037237 352 SHWNHLEIMVQPLMPVDFRSEWIEMIVKGVWKPVDTDKGIEIIVNKMNSDSNGTANSRLHTTEKGLEVCKDYVQGTNGDE 431 (1267)
Q Consensus 352 eH~~~l~p~~~~~~Pq~i~~~w~~~i~~~~WkPvD~~aa~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 431 (1267)
+|+++++|+++++|||+||++|++||++|+||||||+||+||||||+| +++ +|.|+ ||
T Consensus 80 eH~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k-----------~~~-~~~~~----------~g 137 (466)
T PF04780_consen 80 EHPAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLK-----------DVK-SFVYK----------NG 137 (466)
T ss_pred hhhhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHh-----------hcc-hhhhh----------cC
Confidence 999999999999999999999999999999999999999999999999 776 48999 99
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHhh--hccCccccchhhhhcHHHHhhccchhhhh-cccCC-CCceecccCccc
Q 037237 432 YYQNWPLCDDSERVEILESIHSLFLLLLRG--LARGRRVVGWAMHYAIYMLETIAPVLQFK-CHSLK-IPEVICFLGASQ 507 (1267)
Q Consensus 432 ~~~~WPl~dD~eR~klL~kI~~~f~~l~~~--Ls~s~~~~~~vi~ft~~~l~~~~s~s~~~-~~~~~-tP~~ICFL~~~~ 507 (1267)
|+++||||+|+||+|||||||.||++||+| ||||| +||||+||++||++++++++.+ +|+|+ ||||||||||+|
T Consensus 138 w~~~WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~--~~~vi~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~ 215 (466)
T PF04780_consen 138 WSKDWPLADDEERAKLLKKIHSLLKSLCKHKILSCSH--RDWVIQFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQ 215 (466)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHH--HHHHHHhhHHHHhccCcchhhhhhccCCCCCceeEecCcHH
Confidence 999999999999999999999999999999 99999 9999999999999999886665 78887 999999999999
Q ss_pred hHHHHHHHHHHHhhhCCCCCccccccccccccCCCcceeeEeeccCcceeeeccccccccccCCCccCccCCCCCccc-c
Q 037237 508 LRELNFFVHDLTRTCGLNDYSDIIRNLIDNHYTGLNVKERVVFNRDLTCLLLDERLLVGEFTNANYFDVDADDDSAVT-C 586 (1267)
Q Consensus 508 L~~il~fL~~l~~~c~~~~~~e~~~~~~~~~~~~~~vke~I~~~~~~s~LlLD~rll~~~~~~~~~~~~~~dd~~~~~-~ 586 (1267)
|++||+|||+|+ |+.+++++++++++|+|+++++|||||+||+||||||||+|||+|+.++ +||+|+|+ |
T Consensus 216 L~~Il~fL~~l~--~~~~~~~~~v~~~~~~~~~~~~vkekI~ld~~~S~LLLDkrll~~~~~~-------~dd~gti~~~ 286 (466)
T PF04780_consen 216 LNKILKFLQELK--CRRDDGTSLVCRDVDSFWEGSRVKEKIDLDSDFSCLLLDKRLLKGELDP-------FDDEGTINVF 286 (466)
T ss_pred HHHHHHHHHHHh--hccccCcccccccccccccccccceeeecCCccceeeechhhhccCCCc-------cCcCCceecc
Confidence 999999999995 9999999999999999999999999999999999999999999999975 56666666 9
Q ss_pred cccCCCCCCCCCCCceeeecccCCcCcccccchhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 037237 587 CHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGRGKEVLRIILEEFLHLTTAQSRLSKLRGRMEALWAIQT 666 (1267)
Q Consensus 587 ~~~~~~~~~~~~gD~~~sWL~~~~s~~~~~~sw~~~re~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~ye~al~~ve~ 666 (1267)
+|++||+|++|+||+|+||||+|||++++|++|+++|+++++||+||||+|++||++|+++|+||++||+||+||++||+
T Consensus 287 ~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~ 366 (466)
T PF04780_consen 287 DPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLRAVEKEFRTLQSKYEKKCEHLSYEEALQAVEN 366 (466)
T ss_pred CCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCchHHHHHHHhhhhhccCC-C--CCccceehhhhhHHHHHHhhcCCCCCCCCcchh--hhhhcc
Q 037237 667 ICIQEIKNREQRPERAPQPYIELLRKRKNYIQGNG-D--IASKTESEMIPHVLKEAVLALSSDHQCGLDKCE--LEDALK 741 (1267)
Q Consensus 667 lc~eE~~rR~~~~e~~~~~Y~slL~~~~eel~~~~-d--~~~~~~l~~i~~Vl~~~~~~~~t~~~~d~e~~~--~~~~~~ 741 (1267)
||+||++||++++|+||++|||+||+||||+++++ | +++|+|+|||+|||+||++ |+++|.++++|. |+++..
T Consensus 367 lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v~~Vl~~a~~--~~f~~~~~~~~~~~i~~~~s 444 (466)
T PF04780_consen 367 LCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAVRDVLKEAST--PTFNFFGYEDCTSLIRDLKS 444 (466)
T ss_pred HHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHhhccc--CCCCCcccHHHHHHHhcccc
Confidence 99999999999999999999999999999999888 5 9999999999999999999 999999999997 999999
Q ss_pred -cchHHHHHHHHHHHHHHHHHh
Q 037237 742 -HTDNCVLLALQKLKMEMLKKM 762 (1267)
Q Consensus 742 -~~D~~v~~~i~~lk~~~~~k~ 762 (1267)
.+|+.|+++|..|+++++.+|
T Consensus 445 ~~~dd~~~~~~~~l~s~v~~~~ 466 (466)
T PF04780_consen 445 GESDDRVKKSIHLLDSVVQFKV 466 (466)
T ss_pred cccchHHHHHHHHHHHHHhhcC
Confidence 899999999999999998875
|
A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. |
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
| >PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A | Back alignment and domain information |
|---|
| >PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A | Back alignment and domain information |
|---|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
| >PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity [] | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 3e-12
Identities = 101/679 (14%), Positives = 201/679 (29%), Gaps = 232/679 (34%)
Query: 527 YSDIIRNLIDNHYTGLNVKERVVFNRDLTCLLLDERLLVGEFTNANYFDVDADDDSAVTC 586
Y DI+ D F + C + + + +
Sbjct: 18 YKDILSVFEDA------------FVDNFDCKDVQD-MPKSILSKEEI------------- 51
Query: 587 CHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGRGKEVLRIILEEFLHLTT 646
D + + V G + WT L + +E+++ +EE L
Sbjct: 52 ------DHIIMSKD---------AVSGTLRLFWT-LLS----KQEEMVQKFVEEVL---- 87
Query: 647 AQSRLSKLRGRMEALW-AIQTICIQEIKNREQRPERAPQPYIELLRKRKNYIQGNGDIAS 705
R + L I+T Q P + YIE +++ + + + +
Sbjct: 88 --------RINYKFLMSPIKTEQRQ--------PSMMTRMYIE----QRDRLYNDNQVFA 127
Query: 706 K---TESEMIPHVLKEAVLALSSDHQ--------CGLDKCELEDALKHTDNCVLLALQKL 754
K + + L++A+L L G K +AL
Sbjct: 128 KYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSG----------KTW-----VALDVC 171
Query: 755 K-MEMLKKMAF----VD-ATILRHIEVLQMYIPVLEKLCLYDYRSIIVPLLKLFLQVGKV 808
++ KM F ++ VL+M L+KL I P
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLY-----QIDPNWTSRSDHSSN 222
Query: 809 VDELIEIEEKKLKEHVENQKHFECEASLRARKHGAGFTNEAADVPVLSD-------NPNS 861
+ I + +L+ ++++ + C L +V + N +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLL-------------NV---QNAKAWNAFNLSC 266
Query: 862 KV------GENADEMSATEEKQLEAHPEYQSQFEPGATLGVNEFGFGFT-NEAAVVCSSV 914
K+ + D +SA + ++ T +E +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHIS----------------LDHHSMTLTPDEVKSLLLKY 310
Query: 915 LSDNPISRDGENADELK---------------ELEREIEAYLEYWRQFENGTTDSFVNMI 959
L +L E R+ A + W+ D +I
Sbjct: 311 L--------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC---DKLTTII 359
Query: 960 VKSLWHLR--EFREEFMRRRQTI---HNHIGDPCIVCALYDMFAALSTACEDNQVEVPSA 1014
SL L E+R+ F R ++ HI P I+ +L + + + V
Sbjct: 360 ESSLNVLEPAEYRKMF--DRLSVFPPSAHI--PTILLSLI--WFDVIKSDVM-VVVNKLH 412
Query: 1015 PSSL---RVALTTYS-YDKNICKQAKMNDSSELLQAILES--LHESFDTVNCDFQSQDEY 1068
SL + +T S + + K+ + L ++I++ + ++FD+ + D+Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 1069 EGSLDCSSAGCFVHI---IFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKT 1125
+ HI + ++H E++ + +FL + R +++
Sbjct: 473 ----------FYSHIGHHLKNIEHPERMT-----------LFRMVFL-----DFRFLEQK 506
Query: 1126 PRGSSFDVLLKQLVLNGLL 1144
R S +LN L
Sbjct: 507 IRHDSTAWNASGSILNTLQ 525
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1267 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.83 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.28 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.94 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.71 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.37 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.07 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.06 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 95.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 95.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 95.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 95.54 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 95.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 95.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 95.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 94.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 94.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 94.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 94.66 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 94.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 94.5 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 94.26 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 94.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 93.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 93.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 93.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 93.82 | |
| 3mp2_A | 211 | Non-structural protein 3; papain-like protease, TG | 93.75 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 93.68 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 93.63 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 93.6 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 93.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 93.36 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 93.36 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 93.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 93.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 93.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 93.18 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 93.14 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 92.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 92.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 92.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 92.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 92.66 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 92.53 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 92.5 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 92.47 | |
| 2fe8_A | 315 | PP1AB, ORF1AB, replicase polyprotein 1AB; protease | 92.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 92.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 92.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 92.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 92.2 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 92.12 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 91.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 91.79 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 91.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 91.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 91.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 91.43 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 91.25 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 90.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 90.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 90.41 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 90.4 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 90.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 90.32 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 90.3 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 90.29 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 90.15 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 90.04 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 89.96 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 89.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 89.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 89.64 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 89.6 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 89.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 89.54 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 89.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 89.09 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 89.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 89.02 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 88.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 88.07 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 87.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 87.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 87.63 | |
| 3mjh_B | 34 | Early endosome antigen 1; protein-zinc finger comp | 86.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 86.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 86.6 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 86.28 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 85.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 85.44 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 84.98 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 84.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 84.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 84.04 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 83.79 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 83.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 82.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 82.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 80.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 80.68 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-46 Score=425.63 Aligned_cols=292 Identities=15% Similarity=0.203 Sum_probs=219.6
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCC-----CCcHHHHHHHHHHHHhcccCCCCccccccchH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIG-----DPCIVCALYDMFAALSTACEDNQVEVPSAPSS 1017 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~-----~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~ 1017 (1267)
.||.|. |||||||||||||+|+|+||++|+...+..+.... ..++.++|+.+|..++.+. .. ++.|..
T Consensus 9 ~GL~Nl--GNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~-~i~P~~ 81 (367)
T 2y6e_A 9 CGLGNL--GNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR----DA-HVAPRM 81 (367)
T ss_dssp CEECCC--SSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS----CS-EECCHH
T ss_pred cCCccC--CcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC----CC-CcCHHH
Confidence 799997 99999999999999999999999986433222221 2389999999999998543 22 799999
Q ss_pred HHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCC--CCcCCcccc--------cCCCCCC--CCCchheeee
Q 037237 1018 LRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVN--CDFQSQDEY--------EGSLDCS--SAGCFVHIIF 1085 (1267)
Q Consensus 1018 Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~--~~~es~e~~--------~~s~~~~--~~~CIIHqLF 1085 (1267)
|+.++....+ .|..+.||||||||.+||+.||..+.... +..+..+.. ...|... ...++|+++|
T Consensus 82 ~~~~l~~~~~---~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F 158 (367)
T 2y6e_A 82 FKTQVGRFAP---QFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTF 158 (367)
T ss_dssp HHHHHHHHCG---GGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhhh---hcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCcccccc
Confidence 9999999877 89999999999999999999999986532 111100000 0011110 1368999999
Q ss_pred eeEeEeEEecCCCCCcccc-cccccceeeccchhcccccc--------CCCCCcHHHHHHHhc------cCCcccCCcCC
Q 037237 1086 GMDHYEKVNCVKCSAKFGY-RKYTSLFLTLNAYNLRNMKK--------TPRGSSFDVLLKQLV------LNGLLNCGACG 1150 (1267)
Q Consensus 1086 Gg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I~as~l~~~k~--------~~~~~SF~~lLk~~~------~~~~~~C~~Cg 1150 (1267)
+|.++++++|..||++|.+ +||.++.++|+....+.... .....+++++|+.+. .++.|.|++|+
T Consensus 159 ~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~ 238 (367)
T 2y6e_A 159 HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK 238 (367)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTT
T ss_pred CcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCC
Confidence 9999999999999999987 79999999887643221100 012358999998864 34579999999
Q ss_pred Cccc--eehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccc-cccCCcccCCC-C
Q 037237 1151 QINY--IHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSA-ELDISNLFEGY-P 1226 (1267)
Q Consensus 1151 k~~~--kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~-~LDLs~ly~g~-d 1226 (1267)
+.+. ++..|.++|+||+||||||. |......+. .+.+.||. .|||+++.... .
T Consensus 239 ~~~~a~K~~~i~~lP~vL~i~LkRF~--------------------~~~~~~~K~---~~~v~fp~~~Ldl~~~~~~~~~ 295 (367)
T 2y6e_A 239 KHQQATKKFDLWSLPKILVVHLKRFS--------------------YNRYWRDKL---DTVVEFPIRGLNMSEFVCNLSA 295 (367)
T ss_dssp EEECCEEEEEEEECCSEEEEEEECEE--------------------ECSSCEEEC---CCCEECCSSCEECGGGBSCSSS
T ss_pred CCceEEEEEEEecCCcEEEEEEeCee--------------------ecCccceec---CceEEecCCcCChhhhccCCCC
Confidence 8764 67889999999999999996 211111122 23467886 69999977543 3
Q ss_pred CCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1227 PDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1227 ~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
....|+|+|||+|.| ++|||+||+|+..+|+||.|||+.|+
T Consensus 296 ~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~ 338 (367)
T 2y6e_A 296 RPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVS 338 (367)
T ss_dssp CCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEE
T ss_pred CCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCce
Confidence 467999999999999 89999999997668999999999884
|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
| >3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* | Back alignment and structure |
|---|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens} | Back alignment and structure |
|---|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1267 | ||||
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 7e-05 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 8e-04 |
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 7e-05
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 14/156 (8%)
Query: 955 FVNMIVKSLWHLREFREEFMRRRQTIHNHI---GDPCIVCALYDMFAALSTACEDNQVEV 1011
++N V+ + + E ++ R + I AL D+F ++
Sbjct: 15 YMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSS------ 68
Query: 1012 PSAPSSLRVALTTYS---YDKNICKQAKMNDSSELLQAILESLHESFDTVNCDF--QSQD 1066
P L L +K Q D++E ++ L + + + D ++
Sbjct: 69 SIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDS 128
Query: 1067 EYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102
+ S + FG++ + C + +
Sbjct: 129 SSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEE 164
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1267 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 99.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.98 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 94.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 94.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.02 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 93.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 93.62 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 93.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 93.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 92.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 91.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 90.31 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 89.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 88.16 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 87.96 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 87.0 | |
| d2ct1a2 | 36 | Transcriptional repressor CTCF {Human (Homo sapien | 86.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 86.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 85.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 85.62 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 83.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 82.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 81.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 81.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 80.28 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-40 Score=368.10 Aligned_cols=261 Identities=12% Similarity=0.200 Sum_probs=200.8
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
.||.|. ||||||||+||+|+|+|+||++++.... .......|+.|+|+.+|..+..+. .++.|..+...+
T Consensus 7 vGL~Nl--GNTCy~NSvLQ~L~~~~~f~~~i~~~~~--~~~~~~~~~~~~l~~lf~~l~~~~------~~~~~~~~~~~~ 76 (347)
T d1nbfa_ 7 VGLKNQ--GATCYMNSLLQTLFFTNQLRKAVYMMPT--EGDDSSKSVPLALQRVFYELQHSD------KPVGTKKLTKSF 76 (347)
T ss_dssp CCBCCC--SSCHHHHHHHHHHHTSHHHHHHHHTSCC--TTCCTTTCHHHHHHHHHHHHHHCS------SCBCCHHHHHHT
T ss_pred cCCeeC--CcchHHHHHHHHHHcCHHHHHHHHhCCc--cCCcccchHHHHHHHHHHHHhcCC------CCcChHHHHHhh
Confidence 699996 8999999999999999999999987432 222334599999999999998653 268888876666
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcc
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S 1102 (1267)
.. + .|..+.|||||||+..||+.||..+... ...++|+++|+|.+.++++|..|++.|
T Consensus 77 ~~--~---~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------------~~~~~i~~lF~g~~~~~~~C~~C~~~s 134 (347)
T d1nbfa_ 77 GW--E---TLDSFMQHDVQELCRVLLDNVENKMKGT-----------------CVEGTIPKLFRGKMVSYIQCKEVDYRS 134 (347)
T ss_dssp TC--C---GGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------------TTTTHHHHHHCEEEEEEEEESSSCCEE
T ss_pred ch--h---hcchHHHHHHHHHHHHHHHHHHHHHhhc-----------------cccccccceeceEEEEeEEeCCcccee
Confidence 32 2 5777889999999999999999977541 235789999999999999999999999
Q ss_pred cc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc-eehccccCCcEEEEEeeccc
Q 037237 1103 GY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY-IHHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1103 ~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~-kq~tI~rlP~VLtIhLKRFe 1174 (1267)
.+ ++|..+.+.|+. ..++.+.|.... ..+.+.|..|+.... ++..|.++|+||+||||||.
T Consensus 135 ~~~e~f~~l~L~i~~-----------~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~ 203 (347)
T d1nbfa_ 135 DRREDYYDIQLSIKG-----------KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFM 203 (347)
T ss_dssp EEEEEESSEEEECTT-----------CCBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECEE
T ss_pred eeecccccccccccc-----------ccchhhhHHhhcchheeccccccccccCcceeccEEEEEEecCChheEeeeeee
Confidence 87 677777766543 145666665542 234556666655444 56789999999999999996
Q ss_pred cchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCC--CCCeEEEEEEEEEec--CCCcEEEEE
Q 037237 1175 NTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYP--PDNIYFLASMVCVSS--DRQRYIIFV 1250 (1267)
Q Consensus 1175 h~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d--~~~~Y~L~aVVcH~G--~gGHYicfv 1250 (1267)
|.........+ ...+.||..|||+++....+ ....|.|+|||+|.| ++|||+||+
T Consensus 204 --------------------~~~~~~~~~K~-~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~ 262 (347)
T d1nbfa_ 204 --------------------YDPQTDQNIKI-NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYL 262 (347)
T ss_dssp --------------------EETTTTEEEEC-CCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEE
T ss_pred --------------------eccccCccccc-CceEeeeeeeccccccccccccCccceeeEEEEEecCCCCCCEEEEee
Confidence 22221111112 23357899999999775443 356999999999999 889999999
Q ss_pred EecCCCcEEEecCCCCC
Q 037237 1251 YNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1251 r~~~~g~W~~fDDs~V~ 1267 (1267)
|+..+|+||.|||+.|+
T Consensus 263 ~~~~~~~W~~fnD~~V~ 279 (347)
T d1nbfa_ 263 NPKGDGKWCKFDDDVVS 279 (347)
T ss_dssp CTTSSSCCEEEETTEEE
T ss_pred ecCCCCEEEEEECCceE
Confidence 97768899999999884
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|