Citrus Sinensis ID: 037272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MGGYEQRQGGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDDDNSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPATTASAATARPPF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEccccEEEEEEEEccccccEEEEEEEEEEEcEEEEcccccccccccEEEEEEcccccEEcccccccEEEcccEEEEEEEcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccEEEEccEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mggyeqrqgggryfyqllmrpelhlqrpiasttdspqniiqtqpqpcsnnsdsedddnsssssklgkarDDLDAAAAasssnrrprgrppgsknkpkppivvtrdspnalRSHVLEVSGGADIVESMRNYASrrgrgvcvlsgsgtasnvtlrqpagsvltlHGRFEIlslsgtvlpppappgagglsiflsggqgqvvggtvvgplvasgpVILIAASFANAVferlplplddnhpqqqqrqqeeeeegggggvhqvqpsansqssgvtggghqhqltegrgasgasffnmgttgtagnvgnypfsgdlfgwpattasaatarppf
Flexible Loop (DISEMBL)
mggyeqrqgggRYFYQLLMRPELHLQRPIASTTDSPQNIIqtqpqpcsnnsdsedDDNSSSSSKLGKARDDLDAaaaasssnrrprgrppgsknkpkppivvtrdspnalrshvlevsggadiVESMRNYASRRGRGVCVLSgsgtasnvtlrqpAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPATTASAATARPPF
Low Complexity Region (SEG)
MggyeqrqgggryfyqLLMRPELHLQRPIASTTDSPQNIIQTQPQPCsnnsdsedddnsssssklgkarddldaaaaasssnrrprgrppgsknkpkppIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLpppappgaggLSIFLSggqgqvvggtvvgPLVASGPVILIAASFANAVFERLPLPLDDNHPqqqqrqqeeeeegggggVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPattasaataRPPF
Disordered region (IsUnstruct)
***********RYFYQLLMRPELH******************************************************************************************LEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLS**************LSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLP***********************************************************FFNMGTTGTAGNVGNYPFSGDLFGWPA************
Disordered Region (DISOPRED)
**********************************************************************************************************PNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLP*******GGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAV*******************************************************************************************************
Disordered Region (DISEMBL)
********GGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQ*******************************************************KPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD*********************************************EGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPATTA*********
Disordered Region (DISPRO)
********GGGRYF**LLMRPEL***********************************************************************KPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPL********************************************QH*************FNMGTTGTAGNVGNYPFSGDLFGWPAT*******RPPF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGYEQRQGGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDDDNSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPATTASAATARPPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.856	0.900	0.515	2e-55

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 183/355 (51%), Positives = 210/355 (59%), Gaps = 75/355 (21%)

Query: 2   GGYEQRQGGGRYFYQLLMRPELHLQRPI----ASTTDSPQNIIQTQPQPCSNNSDSEDDD 57
           GGYEQ  G  RYF+ L  RPE+H Q+       +  D   +  Q   Q    + DS + D
Sbjct: 3   GGYEQGGGASRYFHNLF-RPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESD 61

Query: 58  NSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEV 117
           +S+      + R D D   ++S+  +RPRGRPPGSKNK KPPI+VTRDSPNALRSHVLEV
Sbjct: 62  HSNKDHHQ-QGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEV 120

Query: 118 SGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----------GSVLTLHGRF 166
           S GADIVES+  YA RRGRGV VL G+GT SNVTLRQP            G V+TLHGRF
Sbjct: 121 SPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRF 180

Query: 167 EILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFE 226
           EILSL+GTVLPPPAPPGAGGLSIFL+GGQGQVVGG+VV PL+AS PVIL+AASF+NAVFE
Sbjct: 181 EILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFE 240

Query: 227 RLPLPLDDNH------------PQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGH 274
           RLP+  ++              PQ QQ                  PSA S  SGVTG G 
Sbjct: 241 RLPIEEEEEEGGGGGGGGGGGPPQMQQ-----------------APSA-SPPSGVTGQGQ 282

Query: 275 QHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGD--LFGWPATTASAATARPPF 327
                                   GNVG Y FSGD  L GW A T S    RPPF
Sbjct: 283 ----------------------LGGNVGGYGFSGDPHLLGWGAGTPS----RPPF 311

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
255539338	289	DNA binding protein, putative [Ricinus c	0.859	0.972	0.626	1e-71
225457666	292	PREDICTED: putative DNA-binding protein	0.874	0.979	0.600	5e-66
326500592	331	predicted protein [Hordeum vulgare subsp	0.703	0.694	0.593	3e-61
357137273	337	PREDICTED: putative DNA-binding protein	0.733	0.712	0.570	2e-59
356574748	324	PREDICTED: putative DNA-binding protein	0.529	0.533	0.650	3e-59
356517911	254	PREDICTED: putative DNA-binding protein	0.611	0.787	0.582	4e-59
297839523	289	hypothetical protein ARALYDRAFT_476807 [	0.648	0.733	0.613	6e-58
15223074	302	AT-hook motif nuclear localized protein	0.663	0.718	0.6	1e-57
296087883	275	unnamed protein product [Vitis vinifera]	0.513	0.610	0.627	3e-57
225463966	291	PREDICTED: putative DNA-binding protein	0.513	0.577	0.627	3e-57

>gi|255539338|ref|XP_002510734.1| DNA binding protein, putative [Ricinus communis] gi|223551435|gb|EEF52921.1| DNA binding protein, putative [Ricinus communis]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 210/335 (62%), Positives = 233/335 (69%), Gaps = 54/335 (16%)

Query: 1   MGGYEQRQG----GGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDD 56
           M GY   Q     G RY +QLL RPELHLQRP             +QP     +SDS+D+
Sbjct: 1   MAGYNNEQSATGTGSRYVHQLL-RPELHLQRP----------SFPSQP-----SSDSKDN 44

Query: 57  DNSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLE 116
           + S  S    K  D   AAA +S SNRRPRGRP GSKNKPKPPI+VTRDSPNALRSHVLE
Sbjct: 45  NISPQSKDHNKFSDSEAAAATSSGSNRRPRGRPAGSKNKPKPPIIVTRDSPNALRSHVLE 104

Query: 117 VSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQ---PAGSVLTLHGRFEILSLSG 173
           VS G+DI+ES+  YA +RGRGVCVLSG+GT +NVTLRQ   PAGSV+TLHGRFEILSLSG
Sbjct: 105 VSTGSDIMESVSIYARKRGRGVCVLSGNGTVANVTLRQPASPAGSVVTLHGRFEILSLSG 164

Query: 174 TVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLD 233
           TVLPPPAPPGAGGLSIFLSGGQGQVVGG+VVGPL+ASGPV+L+AASFANAVFERLPL   
Sbjct: 165 TVLPPPAPPGAGGLSIFLSGGQGQVVGGSVVGPLMASGPVVLMAASFANAVFERLPL--- 221

Query: 234 DNHPQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVT-GGGHQHQLTEGRGASGASFFNM 292
                      +EE+     G   VQ +A SQSSGVT GGG   QL +G G  GA  FNM
Sbjct: 222 -----------DEED-----GTVPVQSTA-SQSSGVTGGGGGAGQLGDGGGGGGAGLFNM 264

Query: 293 GTTGTAGNVGNYPFSGDLFGWPATTASAATARPPF 327
           G     GNV NYPFSGDLFGW         ARPPF
Sbjct: 265 G-----GNVANYPFSGDLFGW-----GVNAARPPF 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457666|ref|XP_002273442.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 230/333 (69%), Gaps = 47/333 (14%)

Query: 1   MGGYEQRQGGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDDDNSS 60
           M GYE    G RY +QLL  PELHLQRP    +  PQ+  Q   QP  +  +S DD    
Sbjct: 1   MEGYEP-GSGSRYVHQLL-GPELHLQRP----SSLPQH--QATQQPSDSRDESPDDQEQR 52

Query: 61  SSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGG 120
           + ++         +  A +SSNRRPRGRPPGSKNKPKPPI+VTRDSPNALRSHVLEV+ G
Sbjct: 53  ADTE---EAAAASSGGATTSSNRRPRGRPPGSKNKPKPPIIVTRDSPNALRSHVLEVAAG 109

Query: 121 ADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA---GSVLTLHGRFEILSLSGTVLP 177
           AD++ES+ NYA RRGRGVCVLSG GT  NVTLRQPA   GS++TLHGRFEILSLSGTVLP
Sbjct: 110 ADVMESVLNYARRRGRGVCVLSGGGTVMNVTLRQPASPAGSIVTLHGRFEILSLSGTVLP 169

Query: 178 PPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHP 237
           PPAPP AGGLSIFLSGGQGQVVGG+VVGPL+ASGPV+L+AASFANAVFERLPL       
Sbjct: 170 PPAPPSAGGLSIFLSGGQGQVVGGSVVGPLMASGPVVLMAASFANAVFERLPL------- 222

Query: 238 QQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGAS---FFNMGT 294
                   EEEEG      QVQP+A SQSSGVTGGG   QL +G G+ G +    +NMG 
Sbjct: 223 --------EEEEGA----VQVQPTA-SQSSGVTGGGAGGQLGDGGGSGGGAGVPIYNMGA 269

Query: 295 TGTAGNVGNYPFSGDLFGWPATTASAATARPPF 327
           +     +GN+PF GDL  W       +  RPPF
Sbjct: 270 S-----MGNFPFPGDLLRW-----GGSAPRPPF 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326500592|dbj|BAJ94962.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 169/251 (67%), Gaps = 21/251 (8%)

Query: 82  NRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVL 141
            RRPRGRP GSKNKPKPPI+VTRDSPNAL SHVLEVS GADIV+ +  YA RRGRGVCVL
Sbjct: 97  TRRPRGRPAGSKNKPKPPIIVTRDSPNALHSHVLEVSAGADIVDCVAEYARRRGRGVCVL 156

Query: 142 SGSGTASNVTLRQPAGS-----VLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQG 196
           SG G   NV LRQP  S     V TL GRFEILSL+GTVLPPPAPPGA GL++FLSGGQG
Sbjct: 157 SGGGAVVNVALRQPGASPPGSVVATLRGRFEILSLTGTVLPPPAPPGASGLTVFLSGGQG 216

Query: 197 QVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGGGVH 256
           QV+GG+VVG LVA+GPV+L+AASF+NAV+ERLPL  ++          E +++    G  
Sbjct: 217 QVIGGSVVGTLVAAGPVVLMAASFSNAVYERLPLEGEEEEVAAAAAGAEAQDQVAQSGGP 276

Query: 257 QVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGDLFGWPAT 316
             Q  A SQSSGVTGG           A G S +N+      GNVGNY   GD FG  A 
Sbjct: 277 PGQQPAASQSSGVTGG----------DAGGMSLYNL----AGGNVGNYQLPGDTFG--AW 320

Query: 317 TASAATARPPF 327
                  RPPF
Sbjct: 321 GGGGGGVRPPF 331

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137273|ref|XP_003570225.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Brachypodium distachyon]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/268 (57%), Positives = 173/268 (64%), Gaps = 28/268 (10%)

Query: 73  DAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYAS 132
           D +  +    RRPRGRP GSKNKPKPPI+VTRDSPNAL SHVLEV+ GADIV+ +  YA 
Sbjct: 85  DGSGGSGGPTRRPRGRPAGSKNKPKPPIIVTRDSPNALHSHVLEVAAGADIVDCVAEYAR 144

Query: 133 RRGRGVCVLSGSGTASNVTLRQPAGS-----VLTLHGRFEILSLSGTVLPPPAPPGAGGL 187
           RRGRGVCVLSG G   NV LRQP  S     V TL GRFEILSL+GTVLPPPAPPGA GL
Sbjct: 145 RRGRGVCVLSGGGAVVNVALRQPGASPPGSVVATLRGRFEILSLTGTVLPPPAPPGASGL 204

Query: 188 SIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEE 247
           ++FLSGGQGQV+GG+VVG LVA+GPV+L+AASFANAV+ERLPL  ++             
Sbjct: 205 TVFLSGGQGQVIGGSVVGSLVAAGPVVLMAASFANAVYERLPLEGEEEDQAAAAAAAAAA 264

Query: 248 EEGG-------GGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGN 300
                        G H  QP+A SQSSGVTG         G  A G S +N+     AGN
Sbjct: 265 GAEAQQDQVAQSAGPHGQQPAA-SQSSGVTG---------GDAAGGMSLYNL-----AGN 309

Query: 301 VGNYPFSGDLF-GWPATTASAATARPPF 327
           VGNY   GD F GW      A   RPPF
Sbjct: 310 VGNYQLPGDNFGGWGGGGGGAGGVRPPF 337

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574748|ref|XP_003555507.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 13/186 (6%)

Query: 54  EDDDNSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSH 113
           ED+DN          RD+     A     RRPRGRPPGSKNKPKPPI VTRDSPN LRSH
Sbjct: 85  EDEDN----------RDE-PKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNTLRSH 133

Query: 114 VLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--GSVLTLHGRFEILSL 171
           V+EV+GGAD+ ES+  +A RR RGVCVLSGSG+ +NVTLRQP+  G+V+ LHGRFEILSL
Sbjct: 134 VMEVTGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSL 193

Query: 172 SGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLP 231
           +GT LP PAPPG+ GL+++L+GGQGQ+VGG+VVG LVA+GPV++IAA+FANA +ERLPL 
Sbjct: 194 TGTFLPGPAPPGSTGLTVYLTGGQGQIVGGSVVGSLVAAGPVMVIAATFANATYERLPLD 253

Query: 232 LDDNHP 237
            DD  P
Sbjct: 254 EDDEGP 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517911|ref|XP_003527629.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 144/247 (58%), Positives = 164/247 (66%), Gaps = 47/247 (19%)

Query: 71  DLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNY 130
           D D      S+ RRPRGRP GSKNKPKPP++VTRDSPN LRSHVLEVS GAD+VES+ NY
Sbjct: 32  DDDDGEGPFSTQRRPRGRPMGSKNKPKPPVIVTRDSPNVLRSHVLEVSSGADVVESLSNY 91

Query: 131 ASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIF 190
           A RRGRGV VLSGSGT +NV LRQPAGSVLTLHGRFEI+S++GTVLPPPAPPG+ GLS++
Sbjct: 92  ARRRGRGVSVLSGSGTVANVVLRQPAGSVLTLHGRFEIVSMTGTVLPPPAPPGSDGLSVY 151

Query: 191 LSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEG 250
           LSG QGQVVGG VV PLVAS  V+L+AASFANA+FERLPLPL + H    Q  QE     
Sbjct: 152 LSGAQGQVVGGVVVAPLVASSHVVLVAASFANAMFERLPLPL-NQHDDDDQVLQEAPR-- 208

Query: 251 GGGGVHQVQPSANSQSSGVTGGGHQHQLTEGRGASGASFFNMGTTGTAGNVGNYPFS--- 307
                            GV G     Q+ +GR                    NYPFS   
Sbjct: 209 -----------------GVMG---TEQVADGR--------------------NYPFSASL 228

Query: 308 -GDLFGW 313
            G++FGW
Sbjct: 229 QGEVFGW 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839523|ref|XP_002887643.1| hypothetical protein ARALYDRAFT_476807 [Arabidopsis lyrata subsp. lyrata] gi|297333484|gb|EFH63902.1| hypothetical protein ARALYDRAFT_476807 [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 165/238 (69%), Gaps = 26/238 (10%)

Query: 2   GGYEQRQGGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDDDNSSS 61
           GGY+Q  G  RYF+ L         RP       PQ  +Q  PQP    SD E D N   
Sbjct: 3   GGYDQTGGASRYFHNLF--------RPELQHQLQPQPQLQPLPQPQQQQSDDESDSNKDP 54

Query: 62  SSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGA 121
            S         D   + S+  +RPRGRPPGSKNKPKPP++VTRDSPN LRSHVLEVS GA
Sbjct: 55  GS---------DPVTSGSTPGKRPRGRPPGSKNKPKPPVIVTRDSPNVLRSHVLEVSSGA 105

Query: 122 DIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA---------GSVLTLHGRFEILSLS 172
           DIVES+  YA RRGRGV +LSG+GT +NV+LRQPA         G V+ LHGRFEILSL+
Sbjct: 106 DIVESVTTYARRRGRGVSILSGNGTVANVSLRQPAAAHGANGGTGGVVALHGRFEILSLT 165

Query: 173 GTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPL 230
           GTVLPPPAPPG+GGLSIFLSG QGQV+GG VV PLVASGPVIL+AASF+NA FERLPL
Sbjct: 166 GTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPL 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223074|ref|NP_177776.1| AT-hook motif nuclear localized protein 29 [Arabidopsis thaliana] gi|12323978|gb|AAG51949.1|AC015450_10 unknown protein; 41834-42742 [Arabidopsis thaliana] gi|119657402|tpd|FAA00300.1| TPA: AT-hook motif nuclear localized protein 29 [Arabidopsis thaliana] gi|332197729|gb|AEE35850.1| AT-hook motif nuclear localized protein 29 [Arabidopsis thaliana]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/240 (60%), Positives = 163/240 (67%), Gaps = 23/240 (9%)

Query: 2   GGYEQRQGGGRYFYQLLMRPELHLQRPIASTTDSPQNIIQTQPQPCSNNSDSEDDDNSSS 61
           GGY+Q  G  RYF+ L  RPELH Q                       NSD E D N   
Sbjct: 3   GGYDQSGGASRYFHNLF-RPELHHQLQPQPQLHPLPQPQPQPQP-QQQNSDDESDSN--- 57

Query: 62  SSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGA 121
                  +D       + S+ +RPRGRPPGSKNKPKPP++VTRDSPN LRSHVLEVS GA
Sbjct: 58  -------KDPGSDPVTSGSTGKRPRGRPPGSKNKPKPPVIVTRDSPNVLRSHVLEVSSGA 110

Query: 122 DIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----------GSVLTLHGRFEILS 170
           DIVES+  YA RRGRGV +LSG+GT +NV+LRQPA           G V+ LHGRFEILS
Sbjct: 111 DIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILS 170

Query: 171 LSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPL 230
           L+GTVLPPPAPPG+GGLSIFLSG QGQV+GG VV PLVASGPVIL+AASF+NA FERLPL
Sbjct: 171 LTGTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPL 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087883|emb|CBI35166.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 140/185 (75%), Gaps = 17/185 (9%)

Query: 77  AASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGR 136
           A   + RRPRGRPPGSKNKPKPPI VTRDSPNALRSHV+EV+ G+DI ES+  +A RR R
Sbjct: 61  AIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQR 120

Query: 137 GVCVLSGSGTASNVTLRQPA---GSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSG 193
           GVCVLS SGT  NVTLRQP+   G+V+ LHGRFEILSL+G  LP PAPPG+ GL+I+L+G
Sbjct: 121 GVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYLAG 180

Query: 194 GQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGG 253
           GQ QVVGG+VVG L+A+GPV++IAA+F+NA +ERLPL              E+EEE G  
Sbjct: 181 GQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPL--------------EDEEEAGSA 226

Query: 254 GVHQV 258
              Q+
Sbjct: 227 AQEQL 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463966|ref|XP_002271606.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 140/185 (75%), Gaps = 17/185 (9%)

Query: 77  AASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGR 136
           A   + RRPRGRPPGSKNKPKPPI VTRDSPNALRSHV+EV+ G+DI ES+  +A RR R
Sbjct: 61  AIEVATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQR 120

Query: 137 GVCVLSGSGTASNVTLRQPA---GSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSG 193
           GVCVLS SGT  NVTLRQP+   G+V+ LHGRFEILSL+G  LP PAPPG+ GL+I+L+G
Sbjct: 121 GVCVLSASGTVMNVTLRQPSAPGGAVMALHGRFEILSLTGAFLPGPAPPGSTGLTIYLAG 180

Query: 194 GQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDNHPQQQQRQQEEEEEGGGG 253
           GQ QVVGG+VVG L+A+GPV++IAA+F+NA +ERLPL              E+EEE G  
Sbjct: 181 GQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPL--------------EDEEEAGSA 226

Query: 254 GVHQV 258
              Q+
Sbjct: 227 AQEQL 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2122148	299	AGF1 "AT4G35390" [Arabidopsis	0.593	0.648	0.454	2.9e-44
TAIR|locus:2011701	302	SOB3 "SUPPRESSOR OF PHYB-4#3"	0.400	0.433	0.612	1.9e-39
TAIR|locus:2037350	311	ESC "ESCAROLA" [Arabidopsis th	0.553	0.581	0.520	4.9e-37
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.412	0.462	0.496	1.2e-35
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.418	0.480	0.482	1.1e-33
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.412	0.398	0.514	2.3e-32
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.412	0.425	0.517	4.7e-32
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.412	0.416	0.5	9.8e-32
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.400	0.422	0.522	8.8e-31
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.400	0.494	0.503	2.3e-30

TAIR|locus:2122148 AGF1 "AT4G35390" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 100/220 (45%), Positives = 134/220 (60%)

Query:   101 VVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA---- 156
             ++TRDSPN LRSHVLEV+ G+DI E++  YA+RRG GVC++SG+G  +NVT+RQPA    
Sbjct:    81 IITRDSPNVLRSHVLEVTSGSDISEAVSTYATRRGCGVCIISGTGAVTNVTIRQPAAPAG 140

Query:   157 GSVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILI 216
             G V+TLHGRF+ILSL+GT L          L+++L+              L+ASGPV+L+
Sbjct:   141 GGVITLHGRFDILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGNVAGSLIASGPVVLM 200

Query:   217 AASFANAVFERLPLPLDDNHPXXXXXXXXXXXXXXXXXVHQVQPSANSQSSGVTGGGHQ- 275
             AASFANAV++RLP+  ++  P                 V Q QP A SQSS VTG G Q 
Sbjct:   201 AASFANAVYDRLPIEEEETPPPRTTG------------VQQQQPEA-SQSSEVTGSGAQA 247

Query:   276 --HQLTEGRGASGASFFNMGTTGTAGNVGNYPFSG-DLFG 312
                 L  G G  G +F+N+G      N+ N+ FSG D++G
Sbjct:   248 CESNLQGGNGGGGVAFYNLGM-----NMNNFQFSGGDIYG 282

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IEP

TAIR|locus:2011701 SOB3 "SUPPRESSOR OF PHYB-4#3" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 87/142 (61%), Positives = 98/142 (69%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--- 156
             ++VTRDSPN LRSHVLEVS GADIVES+  YA RRGRGV +LSG+GT +NV+LRQPA   
Sbjct:    89 VIVTRDSPNVLRSHVLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTA 148

Query:   157 --------GSVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLV 208
                     G V+ LHGRFEILSL+GTVL          LSIFLS             PLV
Sbjct:   149 AHGANGGTGGVVALHGRFEILSLTGTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLV 208

Query:   209 ASGPVILIAASFANAVFERLPL 230
             ASGPVIL+AASF+NA FERLPL
Sbjct:   209 ASGPVILMAASFSNATFERLPL 230

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2037350 ESC "ESCAROLA" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 103/198 (52%), Positives = 115/198 (58%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--- 156
             I+VTRDSPNALRSHVLEVS GADIVES+  YA RRGRGV VL G+GT SNVTLRQP    
Sbjct:   103 IIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPG 162

Query:   157 --------GSVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLV 208
                     G V+TLHGRFEILSL+GTVL          LSIFL+             PL+
Sbjct:   163 NGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLI 222

Query:   209 ASGPVILIAASFANAVFERLPLPLDDNHPXXXXXXXXXXXXXXXXXVHQVQPSANSQSSG 268
             AS PVIL+AASF+NAVFERLP+  ++                      Q  PSA S  SG
Sbjct:   223 ASAPVILMAASFSNAVFERLPIEEEEEEGGGGGGGGGGGPPQM-----QQAPSA-SPPSG 276

Query:   269 VTGGGHQHQLTEGRGASG 286
             VTG G       G G SG
Sbjct:   277 VTGQGQLGGNVGGYGFSG 294

GO:0005737 "cytoplasm" evidence=ISM

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0003680 "AT DNA binding" evidence=IDA

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
 Identities = 68/137 (49%), Positives = 91/137 (66%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQP--AG 157
             +++TR+S N LR+H+LEV+ G D+ + +  YA RR RG+CVLSGSGT +NV++RQP  AG
Sbjct:    99 VIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAG 158

Query:   158 SVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILIA 217
             +V+TL G FEILSLSG+ L          L+IFL+              L A+GPVI+IA
Sbjct:   159 AVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIA 218

Query:   218 ASFANAVFERLPLPLDD 234
             ASF N  +ERLPL  D+
Sbjct:   219 ASFTNVAYERLPLEEDE 235

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 67/139 (48%), Positives = 91/139 (65%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQP--AG 157
             ++VTR+S N LR+H+LEV  G D+ E +  YA RR RG+CVLSG+GT +NV++RQP  AG
Sbjct:    95 VIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAG 154

Query:   158 SVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILIA 217
             +V+TL G FEILSLSG+ L          L+IFL+              L+A+GPV+++A
Sbjct:   155 AVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMA 214

Query:   218 ASFANAVFERLPLPLDDNH 236
             ASF N  +ERLPL   + H
Sbjct:   215 ASFTNVAYERLPLDEHEEH 233

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/138 (51%), Positives = 96/138 (69%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--- 156
             I++TRDS NALR+HV+E+  G DIV+ M  +A RR RGVCV+SG+G+ +NVT+RQP    
Sbjct:   135 IIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPP 194

Query:   157 GSVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILI 216
             GSV++LHGRFEILSLSG+ L          LS++L+             PL+ SGPV+++
Sbjct:   195 GSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVM 254

Query:   217 AASFANAVFERLPLPLDD 234
             AASF+NA +ERLPL  D+
Sbjct:   255 AASFSNAAYERLPLEEDE 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 73/141 (51%), Positives = 96/141 (68%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-- 157
             I++TRDS NAL+SHV+EV+ G D++ES+  +A RR RG+CVLSG+G  +NVT+RQPA   
Sbjct:   106 IIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVP 165

Query:   158 ----SVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPV 213
                 SV+ LHGRFEILSLSG+ L          L+I+L+             PL+ASGPV
Sbjct:   166 GGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPV 225

Query:   214 ILIAASFANAVFERLPLPLDD 234
             +++AASF NA +ERLPL  DD
Sbjct:   226 VIMAASFGNAAYERLPLEEDD 246

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/140 (50%), Positives = 96/140 (68%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--- 156
             I++TRDS NALR+HV+E+  G D+VES+  +A RR RGVCV+SG+G  +NVT+RQP    
Sbjct:   122 IIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHP 181

Query:   157 --GSVLTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVI 214
               GSV++LHGRFEILSLSG+ L          LS++L+             PL+ +GPV+
Sbjct:   182 SPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVV 241

Query:   215 LIAASFANAVFERLPLPLDD 234
             ++AASF+NA +ERLPL  D+
Sbjct:   242 VMAASFSNAAYERLPLEEDE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/134 (52%), Positives = 93/134 (69%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA--G 157
             +VVT++SPN+L+SHVLE++ GAD+ ES+  +A RRGRGV VLSGSG  +NVTLRQPA  G
Sbjct:   105 VVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASG 164

Query:   158 SVLTLHGRFEILSLSGTVLXXXXX-XXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILI 216
              V++L G+FEILS+ G  L           L+I+L+             PL+ASGPVI+I
Sbjct:   165 GVVSLRGQFEILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLIASGPVIVI 224

Query:   217 AASFANAVFERLPL 230
             AA+F NA +ERLP+
Sbjct:   225 AATFCNATYERLPI 238

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 66/131 (50%), Positives = 88/131 (67%)

Query:   100 IVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSV 159
             I+VTRDS NA R HV+E++   D++ES+  +A RR RGVCVL+G+G  +NVT+RQP G V
Sbjct:    76 IIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQPGGGV 135

Query:   160 LTLHGRFEILSLSGTVLXXXXXXXXXXLSIFLSXXXXXXXXXXXXXPLVASGPVILIAAS 219
             ++LHGRFEILSLSG+ L          L ++L+             PL AS PV+++AAS
Sbjct:   136 VSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAAS 195

Query:   220 FANAVFERLPL 230
             F NA +ERLPL
Sbjct:   196 FGNASYERLPL 206

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	6e-39
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-30

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  133 bits (337), Expect = 6e-39
 Identities = 58/120 (48%), Positives = 74/120 (61%), Gaps = 8/120 (6%)

Query: 110 LRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQP-----AGSVLTLHG 164
            R HVL +  G D+VES+  +A +RG G  VLSG G  SNVTLRQP     +  V+TL G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 165 RFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVV-GPLVASGPVILIAASFANA 223
           RFEILSLSGT+   P    +G L + L+   GQVVGG +  G + A+G V++   SF NA
Sbjct: 61  RFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  111 bits (280), Expect = 1e-30
 Identities = 46/115 (40%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQP-----AGSVLTLHGR 165
           R  VL +  G D+VES+  +A   G    VLSG G  SN TLR P         +T  GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 166 FEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASF 220
            EILSLSG + P    P  G L + L+   G+V+GG ++G LVA G V ++    
Sbjct: 61  LEILSLSGNISPDDGKPS-GHLHVSLADSDGRVIGGHLLGALVA-GTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.94
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	89.03

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=3.7e-29  Score=208.97  Aligned_cols=116  Identities=34%  Similarity=0.461  Sum_probs=104.2

Q ss_pred             ceEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC----CceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          110 LRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA----GSVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       110 mr~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~----g~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      ||+|++||++||||+++|++||++++|.+|+|+++|+|++|+|++++    ..+++++|+|||+||+|||++.+++ ++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~-~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGK-PFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTE-EEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCC-Ccc
Confidence            69999999999999999999999999999999999999999999983    4688999999999999999985554 489


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceee
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFER  227 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeR  227 (327)
                      |+||+|++.||+|+||||..+.+ ..++||+|.++....++|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            99999999999999999997776 448999999998888776

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.94  E-value=1.7e-26  Score=200.62  Aligned_cols=121  Identities=19%  Similarity=0.262  Sum_probs=114.3

Q ss_pred             CCceEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC-----CceeeeeccEeEEEeEeeecCCCCCC
Q 037272          108 NALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----GSVLTLHGRFEILSLSGTVLPPPAPP  182 (327)
Q Consensus       108 ~~mr~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~-----g~~~tleG~FEILSLsGnis~~d~~p  182 (327)
                      ..-|.|++||++|+|+++.|.+||++++|.+++++|||+|++++|++++     +.+++++++||||||.|||+..+   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            3458999999999999999999999999999999999999999999999     46899999999999999999997   


Q ss_pred             CCCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCC
Q 037272          183 GAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPL  232 (327)
Q Consensus       183 ~~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~  232 (327)
                      ++.|||++|++++|.++||||.++++.. |+||+|.++....+.|.+++.
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~~  132 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDPT  132 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCCC
Confidence            5999999999999999999999999777 999999999999999999983

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=89.03  E-value=0.16  Score=28.34  Aligned_cols=13  Identities=46%  Similarity=0.843  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 037272           83 RRPRGRPPGSKNK   95 (327)
Q Consensus        83 rrpRGRPpGSknK   95 (327)
                      +|+||||+.+.+|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-29
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	4e-25
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	1e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	2e-12
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-09
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	4e-09

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  108 bits (271), Expect = 3e-29
 Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 7/139 (5%)

Query: 95  KPKPPIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRG-RGVCVLSGSGTASNVTLR 153
                + V+  + +  R + L +  G ++   +  +  +   R   +   +G+ ++V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 154 QP-AGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGP 212
                +  +L G FE++SL+GT+           L + +S   G ++GG ++        
Sbjct: 63  YAGQEATTSLTGTFEVISLNGTLEL-----TGEHLHLAVSDPYGVMLGGHMMPGCTVRTT 117

Query: 213 VILIAASFANAVFERLPLP 231
           + L+        F R P  
Sbjct: 118 LELVIGELPALTFSRQPCA 136

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 97.3 bits (242), Expect = 4e-25
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 110 LRSHVLEVSGGADIVESMRNYASRRG-RGVCVLSGSGTASNVTLRQP-AGSVLTLHGRFE 167
           +    L ++ G D+ + +     +       + S  G  S + +R   + S L +   FE
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFE 61

Query: 168 ILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFER 227
           ILSLSGT+           L I ++  QG+V GG ++   + +    L+   +    F R
Sbjct: 62  ILSLSGTLTYQHC-----HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTR 116

Query: 228 LPLP 231
              P
Sbjct: 117 EFDP 120

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 80.4 bits (198), Expect = 1e-18
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQ-----PAGSVLTLHGR 165
           R+++  V  G +++  ++N+  + G    +++G GT  N  +           V+ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 166 FEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVF 225
           +E++SL G V      P      + L   +G V GG +V   V    + L          
Sbjct: 70  YELISLIGNVSLKDGEP-FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKI 126

Query: 226 ERLP 229
           ER P
Sbjct: 127 ERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLR-----QPAGSVLTLHGR 165
           +  +L +  G D+V  +  +   +G     +S  G   +  +      +       L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 166 FEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVF 225
            EILSLSG V    + P    + + L G  G+V GG +    V +  V ++    +    
Sbjct: 70  LEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 226 ERLPLP 231
           ER    
Sbjct: 126 ERAFDE 131

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLR-----QPAGSVLTLHGR 165
             +++ ++   +IV+++  +   +G     ++G G    +TLR       A    T   +
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 166 FEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVF 225
            EI +L+G +           L I +       + G ++  +       ++     +   
Sbjct: 76  MEISNLTGNISSMNEQVYL-HLHITVGRSDYSALAGHLLSAIQNGAGEFVVEDY--SERI 132

Query: 226 ERLPLP 231
            R   P
Sbjct: 133 SRTYNP 138

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLR---QPAGSVLT-LHGRF 166
             +++ +  G ++++++   A           G G  S  T               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 167 EILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFE 226
           E+ +++G++      P        ++ G  Q  GG ++G  V +G   +    +     +
Sbjct: 73  EMANMTGSIAWKEGKPSI-HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY-PQRLD 130

Query: 227 RLPLP 231
           R   P
Sbjct: 131 RFVDP 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.97
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.96
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.94
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.46

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.97  E-value=1.2e-29  Score=219.50  Aligned_cols=128  Identities=20%  Similarity=0.372  Sum_probs=116.3

Q ss_pred             eecCCCCCceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCCC-ceeeeeccEeEEEeEeeecCCC
Q 037272          102 VTRDSPNALRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPAG-SVLTLHGRFEILSLSGTVLPPP  179 (327)
Q Consensus       102 it~~s~~~mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~g-~~~tleG~FEILSLsGnis~~d  179 (327)
                      ++.++++.+|+|++||++||||+++|.+||++++| ++||++++|+|++|+|++++. .+++++|+|||+||+|||++. 
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~-   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELT-   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETT-
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCccEecCCcEEEEEeeeeEeCC-
Confidence            34577889999999999999999999999999999 677779999999999999994 578899999999999999985 


Q ss_pred             CCCCCCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272          180 APPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD  234 (327)
Q Consensus       180 ~~p~~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~  234 (327)
                          ..||||+|++.||+|+||||+.++++..|+||+|.+|.+..++|++|++..
T Consensus        89 ----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~eTG  139 (154)
T 2hx0_A           89 ----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAISG  139 (154)
T ss_dssp             ----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTTS
T ss_pred             ----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCCCC
Confidence                589999999999999999999876666799999999999899999998765

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.96  E-value=2.3e-29  Score=214.84  Aligned_cols=120  Identities=24%  Similarity=0.317  Sum_probs=110.3

Q ss_pred             ceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCCC-ceeeeeccEeEEEeEeeecCCCCCCCCCce
Q 037272          110 LRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPAG-SVLTLHGRFEILSLSGTVLPPPAPPGAGGL  187 (327)
Q Consensus       110 mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~g-~~~tleG~FEILSLsGnis~~d~~p~~~HL  187 (327)
                      ||+|++||++||||+++|.+||++++| ++||++++|+|++++|++++. .+++++|+|||+||+|||++.     ..||
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~-----~~Hl   76 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQ-----HCHL   76 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSCEEEECSCEEEEEEEEEECSS-----CEEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCccEecCCcEEEEEeEEEEeCC-----CCEE
Confidence            799999999999999999999999999 577779999999999999994 578899999999999999985     5899


Q ss_pred             EEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272          188 SIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD  234 (327)
Q Consensus       188 HISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~  234 (327)
                      ||+|++.||+|+||||+++++++.|+||+|.+|.+..|+|++|++..
T Consensus        77 Hisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~eTG  123 (142)
T 2p6y_A           77 HIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPNTG  123 (142)
T ss_dssp             EEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETTTT
T ss_pred             EEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCCCC
Confidence            99999999999999999866677899999999999899999998764

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=7e-30  Score=217.56  Aligned_cols=119  Identities=23%  Similarity=0.376  Sum_probs=110.4

Q ss_pred             eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      |+|++||++||||+++|++||++++|..|+++++|+|++|+|++++.     ..++++|+|||+||+|||++.++++ +.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p-~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEP-FV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCc-ee
Confidence            79999999999999999999999999888889999999999999883     3688999999999999999976654 89


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCC
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLD  233 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~  233 (327)
                      ||||+|++.||+|+||||..++ ++ |+||+|.+|.+..|+|+| ++.
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~et  133 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TKY  133 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CTT
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CCC
Confidence            9999999999999999999888 66 999999999999999999 654

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.96  E-value=1.4e-29  Score=218.07  Aligned_cols=121  Identities=16%  Similarity=0.242  Sum_probs=111.5

Q ss_pred             eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      |.|++||++||||+++|.+||++++|.+|+++++|+|++|+|++++.     ..++++|+|||+||+|||++.+++ ++.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence            89999999999999999999999999988889999999999999883     378999999999999999998766 489


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD  234 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~  234 (327)
                      |||++|++.||+|+||||..+ ++..|+||+|.++.. .++|.+|++..
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~tG  141 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPDLG  141 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETTTT
T ss_pred             EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCcCC
Confidence            999999999999999999988 556699999999988 79999998753

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=1.6e-29  Score=215.98  Aligned_cols=120  Identities=20%  Similarity=0.255  Sum_probs=111.1

Q ss_pred             eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      |+|++||++||||+++|++||++++|..|+|+++|+|++|+|++++.     .+++++|+|||+||+|||++.+++ ++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence            79999999999999999999999999877789999999999999983     368999999999999999997765 489


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD  234 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~  234 (327)
                      ||||+|+ .||+|+||||.+++|  .|+||+|.+|.+..|+|++|++..
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~etg  134 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQTG  134 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTTTS
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCCCC
Confidence            9999999 999999999998885  599999999999999999998764

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.94  E-value=2.8e-27  Score=203.05  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      |.+++||++|+||+++|.+||++++|..+++++||++++++|++++.     ...+++ ++||+||+|||++.+++ ++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence            77999999999999999999999999999999999999999999883     356788 89999999999987765 499


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD  234 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~  234 (327)
                      |||++|++.+|+|+||||..+.|...|+||+|..+.. .+.|.+|++..
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~R~~D~~tG  138 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLDRFVDPEIQ  138 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCBEEEETTTT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEEEEECCcCC
Confidence            9999999999999999999886554599999998754 89999998754

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.46  E-value=5.2e-05  Score=48.12  Aligned_cols=18  Identities=61%  Similarity=1.036  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 037272           80 SSNRRPRGRPPGSKNKPK   97 (327)
Q Consensus        80 ~~~rrpRGRPpGSknKpk   97 (327)
                      +..|||||||.|||||.-
T Consensus         2 ptpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             CSCCCCSSCCTTCCCCSC
T ss_pred             CCCcCCCCCcCcccccCc
Confidence            456999999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-28
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	9e-20

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 106 SPNALRSHVLEVSGGADIVESMRNYASRRG-RGVCVLSGSGTASNVTLRQP-AGSVLTLH 163
           + +  R + L +  G ++   +  +  +   R   +   +G+ ++V LR     +  +L 
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLT 61

Query: 164 GRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANA 223
           G FE++SL+GT+           L + +S   G ++GG ++        + L+       
Sbjct: 62  GTFEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 116

Query: 224 VFERLPLP 231
            F R P  
Sbjct: 117 TFSRQPCA 124

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.9 bits (202), Expect = 9e-20
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLR---QPAGS--VLTLHGR 165
           +  +L +  G D+V  +  +   +G     +S  G   +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 166 FEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVF 225
            EILSLSG V    + P    + + L G  G+V GG +    V +  V ++    +    
Sbjct: 70  LEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 226 ERLP 229
           ER  
Sbjct: 126 ERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.97
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.95

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=6.8e-30  Score=214.97  Aligned_cols=125  Identities=19%  Similarity=0.356  Sum_probs=116.0

Q ss_pred             CCCCceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCC-CceeeeeccEeEEEeEeeecCCCCCCC
Q 037272          106 SPNALRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPA-GSVLTLHGRFEILSLSGTVLPPPAPPG  183 (327)
Q Consensus       106 s~~~mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~-g~~~tleG~FEILSLsGnis~~d~~p~  183 (327)
                      +.+..|.|++||++||||+++|.+||++++| +++|++++|++++|+|++|+ .....++|+|||+||+|||.+.+    
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCCcEEecCcEEEEEEEEEeccCC----
Confidence            4577899999999999999999999999998 67889999999999999999 56788999999999999999873    


Q ss_pred             CCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCCC
Q 037272          184 AGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDN  235 (327)
Q Consensus       184 ~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~~  235 (327)
                       .|||++|++.||+|+||||+++++++.|+||+|.+|.+..++|.+|++..-
T Consensus        78 -~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~tG~  128 (136)
T d2hx0a1          78 -EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAISGY  128 (136)
T ss_dssp             -EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTTSS
T ss_pred             -CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCCCc
Confidence             799999999999999999999988998999999999999999999887653

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=5.8e-28  Score=202.09  Aligned_cols=119  Identities=21%  Similarity=0.282  Sum_probs=109.7

Q ss_pred             eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC-----CceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272          111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----GSVLTLHGRFEILSLSGTVLPPPAPPGAG  185 (327)
Q Consensus       111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~-----g~~~tleG~FEILSLsGnis~~d~~p~~~  185 (327)
                      |.|++||++||||+++|.+||++++|++|+++++|++++|+|++++     +..+.++|+|||+||+|||...+++| +.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~p-~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKP-FC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCCc-EE
Confidence            8999999999999999999999999999999999999999999987     24779999999999999999888774 99


Q ss_pred             ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCC
Q 037272          186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLD  233 (327)
Q Consensus       186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~  233 (327)
                      |+|+++++ +|+++||||..++++  ++|+++.++.+..++|.+|++.
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~~t  133 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDEQT  133 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECTTT
T ss_pred             EEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCCcc
Confidence            99999997 799999999988765  5799999999999999998865