Citrus Sinensis ID: 037278
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.449 | 0.282 | 0.615 | 3e-61 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.432 | 0.278 | 0.542 | 5e-54 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.434 | 0.274 | 0.513 | 2e-52 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.443 | 0.271 | 0.502 | 9e-51 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.443 | 0.266 | 0.485 | 3e-49 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.436 | 0.277 | 0.478 | 6e-46 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.440 | 0.262 | 0.447 | 3e-45 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.443 | 0.277 | 0.468 | 2e-44 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.440 | 0.268 | 0.448 | 3e-44 | |
| Q9SU64 | 705 | Probable cyclic nucleotid | no | no | 0.436 | 0.278 | 0.432 | 6e-43 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 156/216 (72%), Gaps = 14/216 (6%)
Query: 226 LLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMK 285
L L VPMF +EQ+L +CD L+ VLYT ESYI +EGDPV EM FI RG+LLT+
Sbjct: 476 LCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTI- 534
Query: 286 TTNRKRTGV----YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMAD 341
TTN RTG YL AGDF GEELL WAL+ SSS NLPISTRTVR L EVE AL AD
Sbjct: 535 TTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSS-NLPISTRTVRALMEVEAFALKAD 593
Query: 342 DLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINRLP 401
DLKF AS+FR+++ +QL H R+Y+ +W+TWAA FIQAAWRRYI++KL+ES++ E NRL
Sbjct: 594 DLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQ 653
Query: 402 D--------SSPSLGATIYASRFAATTLRATRRIGT 429
D SSPSLGATIYASRFAA LR RR G+
Sbjct: 654 DALAKEACGSSPSLGATIYASRFAANILRTIRRSGS 689
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| 359491254 | 385 | PREDICTED: putative cyclic nucleotide-ga | 0.766 | 0.893 | 0.433 | 1e-74 | |
| 297600028 | 480 | Os02g0789100 [Oryza sativa Japonica Grou | 0.777 | 0.727 | 0.403 | 4e-72 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.452 | 0.242 | 0.652 | 3e-68 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.452 | 0.286 | 0.648 | 6e-68 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.452 | 0.286 | 0.643 | 4e-67 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.452 | 0.283 | 0.643 | 2e-66 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.452 | 0.283 | 0.643 | 3e-66 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.452 | 0.282 | 0.634 | 1e-64 | |
| 357463865 | 770 | Cyclic nucleotide-gated ion channel [Med | 0.452 | 0.263 | 0.615 | 7e-64 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.452 | 0.286 | 0.611 | 6e-63 |
| >gi|359491254|ref|XP_002280029.2| PREDICTED: putative cyclic nucleotide-gated ion channel 18, partial [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 228/367 (62%), Gaps = 23/367 (6%)
Query: 50 FCFRVK----KILDPQRPFR---NLIFFILGVIAISVDPLFFYIPVVNDDKKCLRLDKAL 102
F FR K +ILDP N IF I ++A+ +DPL+FY+PV+ D C R+D L
Sbjct: 8 FSFRQKSWWTQILDPGGRLVTQWNHIFLISCLLALFLDPLYFYLPVI-DGPACFRIDLGL 66
Query: 103 GTTIIAIRSVLDLFYIIYIILRLRISSLLA-------GNLHKTVRESAIKYFMGFFTIDL 155
G + R+V D+FY+ ++I++ R++ + G L ++ A++Y F ID
Sbjct: 67 GIVVTFFRTVADMFYLTHMIMKFRMAFVAPSSRVFGRGELVMDPQQIALRYLKSDFIIDF 126
Query: 156 VAILPLPQVVI-LIIPTTRGTTFLNATNLFKYFVIFQYVPRIIRIYPFFTKVRRNSDILP 214
A LPLPQ VI IIP + +A ++ V+ QY+PR+ I+P + ++ + + ++
Sbjct: 127 AATLPLPQTVIWYIIPAVKDPITDHANHILSLIVLIQYIPRLFLIFPLYRRIVKITGVVA 186
Query: 215 GATWPKAVFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMF 274
W A +NLLLYMLA HVP FS ++Q+L +C+ L L T ++YI +EGDPV+EMF
Sbjct: 187 RTAWLGAAYNLLLYMLASHVPFFSQMDDQLLDAICERLVSSLSTQDAYIVREGDPVNEMF 246
Query: 275 FITRGQLLTMKTTNRKRTGVY----LQAGDFFGEELLMWALETQSSSENLPISTRTVRTL 330
FI RGQL + TTN R+G + L+ GDF GEELL WAL +SS NLP STRTVR+
Sbjct: 247 FIIRGQLES-STTNGGRSGFFNSITLRPGDFCGEELLTWAL-MPTSSLNLPSSTRTVRST 304
Query: 331 TEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKL- 389
T+VE AL A+DLKF A++F++++ ++L+H R+Y+ +WRTW A FIQ AWRR RKL
Sbjct: 305 TKVEAFALRAEDLKFVANQFKRLHSKKLQHAFRYYSHQWRTWGACFIQVAWRRLKRRKLA 364
Query: 390 KESMRGE 396
KE R E
Sbjct: 365 KELARQE 371
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297600028|ref|NP_001048351.2| Os02g0789100 [Oryza sativa Japonica Group] gi|255671305|dbj|BAF10265.2| Os02g0789100 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357463865|ref|XP_003602214.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] gi|355491262|gb|AES72465.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.414 | 0.259 | 0.611 | 7.2e-88 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.394 | 0.254 | 0.544 | 3.6e-71 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.376 | 0.226 | 0.531 | 3.8e-69 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.407 | 0.249 | 0.507 | 2.9e-67 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.407 | 0.259 | 0.48 | 5.3e-65 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.367 | 0.219 | 0.520 | 1.6e-63 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.405 | 0.253 | 0.473 | 1.3e-61 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.383 | 0.233 | 0.486 | 7.8e-60 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.376 | 0.249 | 0.485 | 1.5e-57 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.407 | 0.294 | 0.465 | 2e-56 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 572 (206.4 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
Identities = 123/201 (61%), Positives = 147/201 (73%)
Query: 224 NLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLT 283
+L L +L VPMF +EQ+L +CD L+ VLYT ESYI +EGDPV EM FI RG+LLT
Sbjct: 475 HLCLALLM-RVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT 533
Query: 284 MKTTNRKRTGV----YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALM 339
+ TTN RTG YL AGDF GEELL WAL+ SSS NLPISTRTVR L EVE AL
Sbjct: 534 I-TTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSS-NLPISTRTVRALMEVEAFALK 591
Query: 340 ADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINR 399
ADDLKF AS+FR+++ +QL H R+Y+ +W+TWAA FIQAAWRRYI++KL+ES++ E NR
Sbjct: 592 ADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENR 651
Query: 400 LPD--------SSPSLGATIY 412
L D SSPSLGATIY
Sbjct: 652 LQDALAKEACGSSPSLGATIY 672
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 449 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 8e-15 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 5e-12 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 2e-06 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 0.001 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
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Score = 70.0 bits (172), Expect = 8e-15
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 236 MFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV- 294
+FS +++ L E+ D+L++ + A I ++GDP ++ + G + K R +
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 295 -YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQM 353
+L GD FGE L+ + TVR LT+ E L L D FR++
Sbjct: 61 GFLGPGDLFGELALL----------GNGPRSATVRALTDSELLVLPRSD-------FRRL 103
Query: 354 NGEQLEHILRFY 365
E E R
Sbjct: 104 LQEYPELARRLL 115
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
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| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
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| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 99.97 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 99.97 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.85 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.83 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.82 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.81 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.77 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.76 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.75 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.74 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.59 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.55 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.53 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.28 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.17 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.14 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.06 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.04 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.69 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.36 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.76 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.35 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.21 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 97.0 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 93.38 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 92.96 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 92.81 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 90.96 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=580.37 Aligned_cols=370 Identities=38% Similarity=0.687 Sum_probs=331.4
Q ss_pred CcccCeeecCCCchh---HHHHHHHHHHHHhhhhhhhhhhhccCCccEEEecccchhhHHHHHHHHHHHHHHHHHHhhhe
Q 037278 51 CFRVKKILDPQRPFR---NLIFFILGVIAISVDPLFFYIPVVNDDKKCLRLDKALGTTIIAIRSVLDLFYIIYIILRLRI 127 (449)
Q Consensus 51 ~~~~~~iidP~~~~~---~~~~l~~~~~~~~v~Plf~y~~~i~~~~~c~~~d~~~~~~~~v~~~i~D~~f~~DIil~F~T 127 (449)
....++||||.|+|+ |+++|++|+|++++||+|||+|.+.+...| +|..+...++++|+++|++|++||++||||
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frt 140 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRT 140 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheE
Confidence 456678999999999 999999999999999999999999888889 999999999999999999999999999999
Q ss_pred eEec-cc-eeecChHHHHHhcccccchhhhhhccCcchhhhhh-hcCCCccchhHHHhHHHHHHHHHhhhHHHhhhhhhh
Q 037278 128 SSLL-AG-NLHKTVRESAIKYFMGFFTIDLVAILPLPQVVILI-IPTTRGTTFLNATNLFKYFVIFQYVPRIIRIYPFFT 204 (449)
Q Consensus 128 ~~~~-~G-~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~~i~~~~-~~~~~~~~~~~~~~llr~~~l~q~~~rl~r~~~l~~ 204 (449)
+|.+ ++ ++|.||++||+||||+||++|++|++|+||+++|+ + +..........+..+.++||++|+.|+++++.
T Consensus 141 ayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 141 AYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred EEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 44 59999999999999999999999999999999998 5 22333445558889999999999999999999
Q ss_pred hhhcccCccccchHHHHHHHHHHHHHhcc---------------------------------------------------
Q 037278 205 KVRRNSDILPGATWPKAVFNLLLYMLAGH--------------------------------------------------- 233 (449)
Q Consensus 205 ~i~~~~g~~~~~~w~~~~~~l~~yml~s~--------------------------------------------------- 233 (449)
++.+.+|+..+++|+|++++++.||+++|
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~ 297 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVY 297 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHH
Confidence 99999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 037278 234 -------------------------------------------------------------------------------- 233 (449)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (449)
T Consensus 298 aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~L 377 (727)
T KOG0498|consen 298 ALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDL 377 (727)
T ss_pred HHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence
Q ss_pred ----------------------------------------------CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCC
Q 037278 234 ----------------------------------------------VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEG 267 (449)
Q Consensus 234 ----------------------------------------------v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eG 267 (449)
+|+|+++|++.+++||.++++..|+|||+|++||
T Consensus 378 RqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireG 457 (727)
T KOG0498|consen 378 RQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREG 457 (727)
T ss_pred HHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecC
Confidence 9999999999999999999999999999999999
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHH
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFA 346 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~l 346 (449)
|++++||||++|.+++..++.+|.... .+++||+|||+.+.||+. .|. ++||+|+|+|+++.|++++|+++
T Consensus 458 d~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~-~p~-------t~TVralt~~el~~L~~~dL~~V 529 (727)
T KOG0498|consen 458 DPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD-LPQ-------TRTVRALTYCELFRLSADDLKEV 529 (727)
T ss_pred CccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc-CCC-------CceeehhhhhhHHhccHHHHHHH
Confidence 999999999999999994443433334 999999999777778874 232 89999999999999999999999
Q ss_pred HHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC--CCcchhhhhhhcHHHHHH
Q 037278 347 ASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINR----LPD--SSPSLGATIYASRFAATT 420 (449)
Q Consensus 347 l~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~er----~~~--~~~~l~~~~~~sr~a~~~ 420 (449)
+++||++++++++|++|+|+++|++|+++++|.+|+++++|+....+...++. .++ .+..++++.+|+++++|+
T Consensus 530 ~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 609 (727)
T KOG0498|consen 530 LQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANG 609 (727)
T ss_pred HHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccC
Confidence 99999999999999999999999999999999999999999876655553222 222 668899999999999999
Q ss_pred HHHHHHccccccC
Q 037278 421 LRATRRIGTRAFT 433 (449)
Q Consensus 421 ~~~~~~~~~~~~~ 433 (449)
.+.++.+.++...
T Consensus 610 ~~~~~~~~~~~~~ 622 (727)
T KOG0498|consen 610 RPPLHTAASRGSS 622 (727)
T ss_pred CCccccccccCcc
Confidence 9998877544333
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 449 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 5e-30 | ||
| 3beh_A | 355 | Structure Of A Bacterial Cyclic Nucleotide Regulate | 1e-04 | ||
| 3clp_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L | 5e-04 | ||
| 1u12_A | 138 | M. Loti Cyclic Nucleotide Binding Domain Mutant Len | 5e-04 | ||
| 1vp6_A | 138 | M.Loti Ion Channel Cylic Nucleotide Binding Domain | 6e-04 | ||
| 2k0g_A | 142 | Solution Structure Of A Bacterial Cyclic Nucleotide | 6e-04 | ||
| 3cl1_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm | 7e-04 | ||
| 3co2_A | 140 | Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai | 8e-04 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 | Back alignment and structure |
| >pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 | Back alignment and structure |
| >pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 | Back alignment and structure |
| >pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 | Back alignment and structure |
| >pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 | Back alignment and structure |
| >pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 | Back alignment and structure |
| >pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-34
Identities = 61/124 (49%), Positives = 85/124 (68%), Gaps = 4/124 (3%)
Query: 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTG 293
VP+F + +E++L +C+ LK L+T +SY+ +EGDPV+EM FI RG+L ++ T +
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 294 V---YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRF 350
L+ GDF G+ELL WAL+ S NLP STRTV+ LTEVE AL+AD+LKF AS+F
Sbjct: 71 YNRSLLKEGDFCGDELLTWALD-PKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 351 RQMN 354
R+
Sbjct: 130 RRSG 133
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.91 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.9 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.9 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.89 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.89 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.89 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.89 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.89 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.89 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.89 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.89 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.88 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.86 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.86 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.85 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.84 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.84 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.83 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.82 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.78 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.76 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.76 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.76 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.75 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.74 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.73 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.72 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.72 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.71 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.7 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.69 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.69 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.69 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.67 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.67 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.66 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.65 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.58 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.58 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.57 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.57 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.56 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.55 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.55 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.53 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.52 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.51 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.51 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.41 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.34 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.29 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.18 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 97.81 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 97.23 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 95.01 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 94.78 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 91.48 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 80.61 |
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=191.62 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=162.9
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHh
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWA 310 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~ 310 (449)
++|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ .+++|++||+.++
T Consensus 3 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~--- 79 (216)
T 4ev0_A 3 GSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL--- 79 (216)
T ss_dssp -CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH---
T ss_pred CChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh---
Confidence 47999999999999999999999999999999999999999999999999998888999877 9999999999887
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLK 390 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~ 390 (449)
+.+.++ +++++|+++|+++.+++++|.++++++|.+....++...+. .+................|...
T Consensus 80 ~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~Rl~~ 148 (216)
T 4ev0_A 80 LDEGER-------SASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR----LREADLELDLLSFEEARNRVAY 148 (216)
T ss_dssp HHCCBC-------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc-------ceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHH
Confidence 676665 89999999999999999999999999999887766665543 3333333333333334455555
Q ss_pred HHHhhhcCCCCC----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 391 ESMRGEINRLPD----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 391 ~~~~~~~er~~~----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.+..-+++...- ++.+||..+|++|.+ +++|+.|+++|-.+..+.++...|++
T Consensus 149 ~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 206 (216)
T 4ev0_A 149 ALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAA 206 (216)
T ss_dssp HHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHH
Confidence 554443332111 899999999999999 99999999999888888899998876
|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 449 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 6e-17 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 5e-06 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 1e-05 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 2e-05 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 3e-05 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-04 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 7e-04 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 7e-04 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.0 bits (183), Expect = 6e-17
Identities = 60/124 (48%), Positives = 85/124 (68%), Gaps = 4/124 (3%)
Query: 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKR-- 291
VP+F + +E++L +C+ LK L+T +SY+ +EGDPV+EM FI RG+L ++ T +
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 292 -TGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRF 350
L+ GDF G+ELL WAL+ +S S P STRTV+ LTEVE AL+AD+LKF AS+F
Sbjct: 71 YNRSLLKEGDFCGDELLTWALDPKSGSNL-PSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 351 RQMN 354
R+
Sbjct: 130 RRSG 133
|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.81 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.8 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.76 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.76 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.75 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.74 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.73 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.72 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.72 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.71 | |
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.68 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.68 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.67 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.66 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.66 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.65 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.59 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 96.24 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 95.86 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 95.83 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 95.42 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 95.4 | |
| d2bgca1 | 100 | Listeriolysin regulatory protein PrfA, C-terminal | 95.13 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 94.82 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 94.78 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 94.01 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 89.04 | |
| d1o5ua_ | 88 | Hypothetical protein TM1112 {Thermotoga maritima [ | 85.21 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 81.35 |
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Regulatory subunit of Protein kinase A species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.81 E-value=3.4e-20 Score=158.71 Aligned_cols=121 Identities=18% Similarity=0.274 Sum_probs=109.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE---EecCCCeecHHhH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV---YLQAGDFFGEELL 307 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~---~l~~Gd~fGE~~l 307 (449)
..++|+|++|+++++..|++.++++.|++|++|+++||+++++|+|.+|.++++...++|++.+ .+++|++||+.++
T Consensus 4 L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~ 83 (132)
T d1ne6a2 4 LSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIAL 83 (132)
T ss_dssp HHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHH
T ss_pred HhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeee
Confidence 3568999999999999999999999999999999999999999999999999997777777643 8999999999988
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHI 361 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~ 361 (449)
+.+.++ ++|++|.++|+++.|++++|.++++++|.+..+.+++.
T Consensus 84 ---~~~~~~-------~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~~i~~~ 127 (132)
T d1ne6a2 84 ---LMNRPR-------AATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 127 (132)
T ss_dssp ---HHTSSC-------SSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHHGGGGC
T ss_pred ---cCCCce-------eEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 676766 89999999999999999999999999999877766543
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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| >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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